0s autopkgtest [09:43:05]: starting date and time: 2024-11-13 09:43:05+0000
  0s autopkgtest [09:43:05]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [09:43:05]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ehozk9v0/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade nipy --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-18.secgroup --name adt-plucky-arm64-nipy-20241113-094304-juju-7f2275-prod-proposed-migration-environment-20-1d479f81-077d-4bd7-910f-bd2d87ac37e2 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
104s autopkgtest [09:44:49]: testbed dpkg architecture: arm64
104s autopkgtest [09:44:49]: testbed apt version: 2.9.8
104s autopkgtest [09:44:49]: @@@@@@@@@@@@@@@@@@@@ test bed setup
105s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
105s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
106s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB]
106s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB]
106s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB]
106s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB]
106s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB]
106s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB]
106s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB]
106s Fetched 1794 kB in 1s (1859 kB/s)
106s Reading package lists...
109s Reading package lists...
109s Building dependency tree...
109s Reading state information...
110s Calculating upgrade...
111s The following NEW packages will be installed:
111s   python3.13-gdbm
111s The following packages will be upgraded:
111s   libpython3-stdlib python3 python3-gdbm python3-minimal
111s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
111s Need to get 101 kB of archives.
111s After this operation, 141 kB of additional disk space will be used.
111s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB]
112s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB]
112s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB]
112s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB]
112s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B]
112s Fetched 101 kB in 0s (234 kB/s)
113s (Reading database ... 
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(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 79924 files and directories currently installed.)
113s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ...
113s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
113s Setting up python3-minimal (3.12.7-1) ...
113s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 79924 files and directories currently installed.)
113s Preparing to unpack .../python3_3.12.7-1_arm64.deb ...
113s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
113s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ...
113s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ...
113s Selecting previously unselected package python3.13-gdbm.
113s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ...
113s Unpacking python3.13-gdbm (3.13.0-2) ...
113s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ...
113s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ...
113s Setting up python3.13-gdbm (3.13.0-2) ...
113s Setting up libpython3-stdlib:arm64 (3.12.7-1) ...
113s Setting up python3 (3.12.7-1) ...
114s Setting up python3-gdbm:arm64 (3.12.7-1) ...
114s Processing triggers for man-db (2.12.1-3) ...
114s Reading package lists...
115s Building dependency tree...
115s Reading state information...
116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
116s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
116s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
116s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
116s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
118s Reading package lists...
118s Reading package lists...
118s Building dependency tree...
118s Reading state information...
119s Calculating upgrade...
119s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
119s Reading package lists...
120s Building dependency tree...
120s Reading state information...
120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
123s autopkgtest [09:45:08]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024
124s autopkgtest [09:45:09]: @@@@@@@@@@@@@@@@@@@@ apt-source nipy
127s Get:1 http://ftpmaster.internal/ubuntu plucky/universe nipy 0.6.1-1 (dsc) [2510 B]
127s Get:2 http://ftpmaster.internal/ubuntu plucky/universe nipy 0.6.1-1 (tar) [1653 kB]
127s Get:3 http://ftpmaster.internal/ubuntu plucky/universe nipy 0.6.1-1 (diff) [12.4 kB]
127s gpgv: Signature made Sun Oct 20 16:12:46 2024 UTC
127s gpgv:                using RSA key 8F6DE104377F3B11E741748731F3144544A1741A
127s gpgv:                issuer "tchet@debian.org"
127s gpgv: Can't check signature: No public key
127s dpkg-source: warning: cannot verify inline signature for ./nipy_0.6.1-1.dsc: no acceptable signature found
127s autopkgtest [09:45:12]: testing package nipy version 0.6.1-1
128s autopkgtest [09:45:13]: build not needed
128s autopkgtest [09:45:13]: test command1: preparing testbed
130s Reading package lists...
130s Building dependency tree...
130s Reading state information...
131s Starting pkgProblemResolver with broken count: 0
131s Starting 2 pkgProblemResolver with broken count: 0
131s Done
132s The following additional packages will be installed:
132s   fonts-mathjax libblas3 libgfortran5 libjs-jquery libjs-mathjax
132s   libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 python-nipy-doc
132s   python3-decorator python3-iniconfig python3-mpmath python3-nibabel
132s   python3-nipy python3-nipy-lib python3-numpy python3-packaging python3-pluggy
132s   python3-pytest python3-scipy python3-sympy python3-transforms3d
132s Suggested packages:
132s   fonts-mathjax-extras fonts-stix libjs-mathjax-doc python-mpmath-doc
132s   python3-gmpy2 python3-matplotlib python-nibabel-doc python3-mvpa gcc
132s   gfortran python-numpy-doc python3-dev python-scipy-doc texlive-fonts-extra
132s   dvipng python-sympy-doc
132s Recommended packages:
132s   javascript-common python3-pydicom python3-fuse python3-matplotlib mayavi2
132s   g++ | c++-compiler python3-pil isympy-common
132s The following NEW packages will be installed:
132s   autopkgtest-satdep fonts-mathjax libblas3 libgfortran5 libjs-jquery
132s   libjs-mathjax libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0
132s   python-nipy-doc python3-decorator python3-iniconfig python3-mpmath
132s   python3-nibabel python3-nipy python3-nipy-lib python3-numpy
132s   python3-packaging python3-pluggy python3-pytest python3-scipy python3-sympy
132s   python3-transforms3d
132s 0 upgraded, 24 newly installed, 0 to remove and 0 not upgraded.
132s Need to get 43.7 MB/43.7 MB of archives.
132s After this operation, 202 MB of additional disk space will be used.
132s Get:1 /tmp/autopkgtest.pAs2yI/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [724 B]
132s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
134s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB]
134s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB]
134s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
134s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
134s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB]
134s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB]
136s Get:9 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB]
136s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB]
136s Get:11 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B]
136s Get:12 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mpmath all 1.3.0-1 [425 kB]
136s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB]
138s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.1-1 [41.4 kB]
138s Get:15 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.13.1-5 [16.3 MB]
140s Get:16 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-nibabel all 5.2.1-2 [2696 kB]
140s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sympy all 1.13.3-1 [4228 kB]
140s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-transforms3d all 0.4.2+ds-1 [1359 kB]
140s Get:19 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-nipy-lib arm64 0.6.1-1 [636 kB]
140s Get:20 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-nipy all 0.6.1-1 [727 kB]
140s Get:21 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB]
140s Get:22 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB]
140s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
141s Get:24 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-nipy-doc all 0.6.1-1 [1970 kB]
141s Fetched 43.7 MB in 9s (5109 kB/s)
141s Selecting previously unselected package fonts-mathjax.
141s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 79931 files and directories currently installed.)
141s Preparing to unpack .../00-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
141s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
141s Selecting previously unselected package libblas3:arm64.
141s Preparing to unpack .../01-libblas3_3.12.0-3build2_arm64.deb ...
141s Unpacking libblas3:arm64 (3.12.0-3build2) ...
141s Selecting previously unselected package libgfortran5:arm64.
141s Preparing to unpack .../02-libgfortran5_14.2.0-8ubuntu1_arm64.deb ...
141s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ...
141s Selecting previously unselected package libjs-jquery.
141s Preparing to unpack .../03-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
141s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
141s Selecting previously unselected package libjs-underscore.
141s Preparing to unpack .../04-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ...
141s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
142s Selecting previously unselected package libjs-sphinxdoc.
142s Preparing to unpack .../05-libjs-sphinxdoc_7.4.7-4_all.deb ...
142s Unpacking libjs-sphinxdoc (7.4.7-4) ...
142s Selecting previously unselected package liblapack3:arm64.
142s Preparing to unpack .../06-liblapack3_3.12.0-3build2_arm64.deb ...
142s Unpacking liblapack3:arm64 (3.12.0-3build2) ...
142s Selecting previously unselected package liblbfgsb0:arm64.
142s Preparing to unpack .../07-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ...
142s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ...
142s Selecting previously unselected package python3-decorator.
142s Preparing to unpack .../08-python3-decorator_5.1.1-5_all.deb ...
142s Unpacking python3-decorator (5.1.1-5) ...
142s Selecting previously unselected package python3-iniconfig.
142s Preparing to unpack .../09-python3-iniconfig_1.1.1-2_all.deb ...
142s Unpacking python3-iniconfig (1.1.1-2) ...
142s Selecting previously unselected package python3-mpmath.
142s Preparing to unpack .../10-python3-mpmath_1.3.0-1_all.deb ...
142s Unpacking python3-mpmath (1.3.0-1) ...
142s Selecting previously unselected package python3-numpy.
142s Preparing to unpack .../11-python3-numpy_1%3a1.26.4+ds-11build1_arm64.deb ...
142s Unpacking python3-numpy (1:1.26.4+ds-11build1) ...
142s Selecting previously unselected package python3-packaging.
142s Preparing to unpack .../12-python3-packaging_24.1-1_all.deb ...
142s Unpacking python3-packaging (24.1-1) ...
142s Selecting previously unselected package python3-scipy.
142s Preparing to unpack .../13-python3-scipy_1.13.1-5_arm64.deb ...
142s Unpacking python3-scipy (1.13.1-5) ...
143s Selecting previously unselected package python3-nibabel.
143s Preparing to unpack .../14-python3-nibabel_5.2.1-2_all.deb ...
143s Unpacking python3-nibabel (5.2.1-2) ...
143s Selecting previously unselected package python3-sympy.
143s Preparing to unpack .../15-python3-sympy_1.13.3-1_all.deb ...
143s Unpacking python3-sympy (1.13.3-1) ...
143s Selecting previously unselected package python3-transforms3d.
143s Preparing to unpack .../16-python3-transforms3d_0.4.2+ds-1_all.deb ...
143s Unpacking python3-transforms3d (0.4.2+ds-1) ...
143s Selecting previously unselected package python3-nipy-lib:arm64.
143s Preparing to unpack .../17-python3-nipy-lib_0.6.1-1_arm64.deb ...
143s Unpacking python3-nipy-lib:arm64 (0.6.1-1) ...
143s Selecting previously unselected package python3-nipy.
143s Preparing to unpack .../18-python3-nipy_0.6.1-1_all.deb ...
143s Unpacking python3-nipy (0.6.1-1) ...
143s Selecting previously unselected package python3-pluggy.
143s Preparing to unpack .../19-python3-pluggy_1.5.0-1_all.deb ...
143s Unpacking python3-pluggy (1.5.0-1) ...
143s Selecting previously unselected package python3-pytest.
143s Preparing to unpack .../20-python3-pytest_8.3.3-1_all.deb ...
143s Unpacking python3-pytest (8.3.3-1) ...
143s Selecting previously unselected package libjs-mathjax.
143s Preparing to unpack .../21-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
143s Unpacking libjs-mathjax (2.7.9+dfsg-1) ...
144s Selecting previously unselected package python-nipy-doc.
144s Preparing to unpack .../22-python-nipy-doc_0.6.1-1_all.deb ...
144s Unpacking python-nipy-doc (0.6.1-1) ...
144s Selecting previously unselected package autopkgtest-satdep.
144s Preparing to unpack .../23-1-autopkgtest-satdep.deb ...
144s Unpacking autopkgtest-satdep (0) ...
144s Setting up python3-iniconfig (1.1.1-2) ...
145s Setting up fonts-mathjax (2.7.9+dfsg-1) ...
145s Setting up libjs-mathjax (2.7.9+dfsg-1) ...
145s Setting up python3-decorator (5.1.1-5) ...
145s Setting up libblas3:arm64 (3.12.0-3build2) ...
145s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
145s Setting up python3-packaging (24.1-1) ...
145s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ...
145s Setting up python3-pluggy (1.5.0-1) ...
145s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
145s Setting up python3-mpmath (1.3.0-1) ...
146s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
146s Setting up python3-sympy (1.13.3-1) ...
153s Setting up liblapack3:arm64 (3.12.0-3build2) ...
153s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
153s Setting up python3-pytest (8.3.3-1) ...
154s Setting up python3-numpy (1:1.26.4+ds-11build1) ...
156s Setting up libjs-sphinxdoc (7.4.7-4) ...
156s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ...
156s Setting up python3-transforms3d (0.4.2+ds-1) ...
156s Setting up python3-scipy (1.13.1-5) ...
161s Setting up python-nipy-doc (0.6.1-1) ...
161s Setting up python3-nibabel (5.2.1-2) ...
162s Setting up python3-nipy-lib:arm64 (0.6.1-1) ...
162s Setting up python3-nipy (0.6.1-1) ...
162s Setting up autopkgtest-satdep (0) ...
162s Processing triggers for man-db (2.12.1-3) ...
163s Processing triggers for libc-bin (2.40-1ubuntu3) ...
168s (Reading database ... 90345 files and directories currently installed.)
168s Removing autopkgtest-satdep (0) ...
169s autopkgtest [09:45:54]: test command1: cd debian/tests && python3 -m pytest nipy_test.py
169s autopkgtest [09:45:54]: test command1: [-----------------------
169s ============================= test session starts ==============================
169s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0
169s rootdir: /tmp/autopkgtest.pAs2yI/build.4lu/src
169s configfile: pyproject.toml
169s plugins: typeguard-4.4.1
169s collected 4 items
169s 
169s nipy_test.py ....                                                        [100%]
169s 
169s =============================== warnings summary ===============================
169s debian/tests/nipy_test.py::test_image_save_to_file
169s   /usr/lib/python3/dist-packages/nipy/io/files.py:141: FutureWarning: Default `strict` currently False; this will change to True in a future version of nipy
169s     ni_img = nipy2nifti(img, data_dtype = io_dtype)
169s 
169s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
169s ========================= 4 passed, 1 warning in 0.28s =========================
170s autopkgtest [09:45:55]: test command1: -----------------------]
170s autopkgtest [09:45:55]: test command1:  - - - - - - - - - - results - - - - - - - - - -
170s command1             PASS
171s autopkgtest [09:45:56]: test autodep8-python3: preparing testbed
281s autopkgtest [09:47:46]: testbed dpkg architecture: arm64
281s autopkgtest [09:47:46]: testbed apt version: 2.9.8
281s autopkgtest [09:47:46]: @@@@@@@@@@@@@@@@@@@@ test bed setup
282s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
283s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB]
283s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
283s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB]
283s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB]
283s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB]
283s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB]
283s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB]
283s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB]
283s Fetched 1794 kB in 1s (2051 kB/s)
283s Reading package lists...
286s Reading package lists...
286s Building dependency tree...
286s Reading state information...
287s Calculating upgrade...
289s The following NEW packages will be installed:
289s   python3.13-gdbm
289s The following packages will be upgraded:
289s   libpython3-stdlib python3 python3-gdbm python3-minimal
289s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
289s Need to get 101 kB of archives.
289s After this operation, 141 kB of additional disk space will be used.
289s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB]
289s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB]
289s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB]
289s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB]
289s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B]
290s Fetched 101 kB in 0s (254 kB/s)
290s (Reading database ... 
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(Reading database ... 79924 files and directories currently installed.)
290s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ...
290s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
290s Setting up python3-minimal (3.12.7-1) ...
291s (Reading database ... 
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291s Preparing to unpack .../python3_3.12.7-1_arm64.deb ...
291s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
291s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ...
291s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ...
291s Selecting previously unselected package python3.13-gdbm.
291s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ...
291s Unpacking python3.13-gdbm (3.13.0-2) ...
291s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ...
291s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ...
291s Setting up python3.13-gdbm (3.13.0-2) ...
291s Setting up libpython3-stdlib:arm64 (3.12.7-1) ...
291s Setting up python3 (3.12.7-1) ...
291s Setting up python3-gdbm:arm64 (3.12.7-1) ...
291s Processing triggers for man-db (2.12.1-3) ...
292s Reading package lists...
293s Building dependency tree...
293s Reading state information...
294s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
294s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
294s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
294s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
294s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
296s Reading package lists...
296s Reading package lists...
296s Building dependency tree...
296s Reading state information...
297s Calculating upgrade...
298s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
298s Reading package lists...
298s Building dependency tree...
298s Reading state information...
299s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
304s Reading package lists...
305s Building dependency tree...
305s Reading state information...
305s Starting pkgProblemResolver with broken count: 0
305s Starting 2 pkgProblemResolver with broken count: 0
305s Done
306s The following additional packages will be installed:
306s   libblas3 libgfortran5 liblapack3 liblbfgsb0 libpython3.13-minimal
306s   libpython3.13-stdlib python3-all python3-decorator python3-mpmath
306s   python3-nibabel python3-nipy python3-nipy-lib python3-numpy
306s   python3-packaging python3-scipy python3-sympy python3-transforms3d
306s   python3.13 python3.13-minimal
306s Suggested packages:
306s   python-mpmath-doc python3-gmpy2 python3-matplotlib python-nibabel-doc
306s   python3-mvpa gcc gfortran python-numpy-doc python3-dev python3-pytest
306s   python-scipy-doc texlive-fonts-extra dvipng python-sympy-doc python3.13-venv
306s   python3.13-doc binfmt-support
306s Recommended packages:
306s   python3-pydicom python3-fuse python3-matplotlib mayavi2 g++ | c++-compiler
306s   python3-pil isympy-common
306s The following NEW packages will be installed:
306s   autopkgtest-satdep libblas3 libgfortran5 liblapack3 liblbfgsb0
306s   libpython3.13-minimal libpython3.13-stdlib python3-all python3-decorator
306s   python3-mpmath python3-nibabel python3-nipy python3-nipy-lib python3-numpy
306s   python3-packaging python3-scipy python3-sympy python3-transforms3d
306s   python3.13 python3.13-minimal
306s 0 upgraded, 20 newly installed, 0 to remove and 0 not upgraded.
306s Need to get 38.8 MB/38.8 MB of archives.
306s After this operation, 164 MB of additional disk space will be used.
306s Get:1 /tmp/autopkgtest.pAs2yI/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [712 B]
307s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB]
307s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.0-2 [2100 kB]
307s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB]
307s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB]
307s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB]
307s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB]
307s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [2073 kB]
307s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.0-2 [719 kB]
307s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all arm64 3.12.7-1 [890 B]
307s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB]
307s Get:12 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mpmath all 1.3.0-1 [425 kB]
307s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB]
307s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.1-1 [41.4 kB]
307s Get:15 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.13.1-5 [16.3 MB]
308s Get:16 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-nibabel all 5.2.1-2 [2696 kB]
308s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sympy all 1.13.3-1 [4228 kB]
308s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-transforms3d all 0.4.2+ds-1 [1359 kB]
308s Get:19 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-nipy-lib arm64 0.6.1-1 [636 kB]
308s Get:20 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-nipy all 0.6.1-1 [727 kB]
309s Fetched 38.8 MB in 2s (20.2 MB/s)
309s Selecting previously unselected package libpython3.13-minimal:arm64.
309s (Reading database ... 
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(Reading database ... 79931 files and directories currently installed.)
309s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_arm64.deb ...
309s Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ...
309s Selecting previously unselected package python3.13-minimal.
309s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_arm64.deb ...
309s Unpacking python3.13-minimal (3.13.0-2) ...
309s Selecting previously unselected package libblas3:arm64.
309s Preparing to unpack .../02-libblas3_3.12.0-3build2_arm64.deb ...
309s Unpacking libblas3:arm64 (3.12.0-3build2) ...
309s Selecting previously unselected package libgfortran5:arm64.
309s Preparing to unpack .../03-libgfortran5_14.2.0-8ubuntu1_arm64.deb ...
309s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ...
309s Selecting previously unselected package liblapack3:arm64.
309s Preparing to unpack .../04-liblapack3_3.12.0-3build2_arm64.deb ...
309s Unpacking liblapack3:arm64 (3.12.0-3build2) ...
309s Selecting previously unselected package liblbfgsb0:arm64.
309s Preparing to unpack .../05-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ...
309s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ...
309s Selecting previously unselected package libpython3.13-stdlib:arm64.
309s Preparing to unpack .../06-libpython3.13-stdlib_3.13.0-2_arm64.deb ...
309s Unpacking libpython3.13-stdlib:arm64 (3.13.0-2) ...
309s Selecting previously unselected package python3.13.
309s Preparing to unpack .../07-python3.13_3.13.0-2_arm64.deb ...
309s Unpacking python3.13 (3.13.0-2) ...
309s Selecting previously unselected package python3-all.
309s Preparing to unpack .../08-python3-all_3.12.7-1_arm64.deb ...
309s Unpacking python3-all (3.12.7-1) ...
309s Selecting previously unselected package python3-decorator.
309s Preparing to unpack .../09-python3-decorator_5.1.1-5_all.deb ...
309s Unpacking python3-decorator (5.1.1-5) ...
309s Selecting previously unselected package python3-mpmath.
309s Preparing to unpack .../10-python3-mpmath_1.3.0-1_all.deb ...
309s Unpacking python3-mpmath (1.3.0-1) ...
309s Selecting previously unselected package python3-numpy.
310s Preparing to unpack .../11-python3-numpy_1%3a1.26.4+ds-11build1_arm64.deb ...
310s Unpacking python3-numpy (1:1.26.4+ds-11build1) ...
310s Selecting previously unselected package python3-packaging.
310s Preparing to unpack .../12-python3-packaging_24.1-1_all.deb ...
310s Unpacking python3-packaging (24.1-1) ...
310s Selecting previously unselected package python3-scipy.
310s Preparing to unpack .../13-python3-scipy_1.13.1-5_arm64.deb ...
310s Unpacking python3-scipy (1.13.1-5) ...
310s Selecting previously unselected package python3-nibabel.
310s Preparing to unpack .../14-python3-nibabel_5.2.1-2_all.deb ...
310s Unpacking python3-nibabel (5.2.1-2) ...
310s Selecting previously unselected package python3-sympy.
310s Preparing to unpack .../15-python3-sympy_1.13.3-1_all.deb ...
310s Unpacking python3-sympy (1.13.3-1) ...
311s Selecting previously unselected package python3-transforms3d.
311s Preparing to unpack .../16-python3-transforms3d_0.4.2+ds-1_all.deb ...
311s Unpacking python3-transforms3d (0.4.2+ds-1) ...
311s Selecting previously unselected package python3-nipy-lib:arm64.
311s Preparing to unpack .../17-python3-nipy-lib_0.6.1-1_arm64.deb ...
311s Unpacking python3-nipy-lib:arm64 (0.6.1-1) ...
311s Selecting previously unselected package python3-nipy.
311s Preparing to unpack .../18-python3-nipy_0.6.1-1_all.deb ...
311s Unpacking python3-nipy (0.6.1-1) ...
311s Selecting previously unselected package autopkgtest-satdep.
311s Preparing to unpack .../19-2-autopkgtest-satdep.deb ...
311s Unpacking autopkgtest-satdep (0) ...
311s Setting up libpython3.13-minimal:arm64 (3.13.0-2) ...
311s Setting up python3-decorator (5.1.1-5) ...
312s Setting up libblas3:arm64 (3.12.0-3build2) ...
312s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
312s Setting up python3-packaging (24.1-1) ...
312s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ...
312s Setting up python3.13-minimal (3.13.0-2) ...
313s Setting up python3-mpmath (1.3.0-1) ...
314s Setting up libpython3.13-stdlib:arm64 (3.13.0-2) ...
314s Setting up python3-sympy (1.13.3-1) ...
330s Setting up liblapack3:arm64 (3.12.0-3build2) ...
330s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
330s Setting up python3.13 (3.13.0-2) ...
331s Setting up python3-all (3.12.7-1) ...
331s Setting up python3-numpy (1:1.26.4+ds-11build1) ...
335s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ...
335s Setting up python3-transforms3d (0.4.2+ds-1) ...
335s Setting up python3-scipy (1.13.1-5) ...
343s Setting up python3-nibabel (5.2.1-2) ...
345s Setting up python3-nipy-lib:arm64 (0.6.1-1) ...
345s Setting up python3-nipy (0.6.1-1) ...
346s Setting up autopkgtest-satdep (0) ...
346s Processing triggers for systemd (256.5-2ubuntu4) ...
346s Processing triggers for man-db (2.12.1-3) ...
346s Processing triggers for libc-bin (2.40-1ubuntu3) ...
350s (Reading database ... 85754 files and directories currently installed.)
350s Removing autopkgtest-satdep (0) ...
352s autopkgtest [09:48:57]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import nipy; print(nipy)" ; done
352s autopkgtest [09:48:57]: test autodep8-python3: [-----------------------
353s Testing with python3.13:
353s Traceback (most recent call last):
353s   File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in <module>
353s     from . import multiarray
353s   File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in <module>
353s     from . import overrides
353s   File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in <module>
353s     from numpy.core._multiarray_umath import (
353s         add_docstring,  _get_implementing_args, _ArrayFunctionDispatcher)
353s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
353s 
353s During handling of the above exception, another exception occurred:
353s 
353s Traceback (most recent call last):
353s   File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in <module>
353s     from numpy.__config__ import show as show_config
353s   File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in <module>
353s     from numpy.core._multiarray_umath import (
353s     ...<3 lines>...
353s     )
353s   File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in <module>
353s     raise ImportError(msg)
353s ImportError: 
353s 
353s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
353s 
353s Importing the numpy C-extensions failed. This error can happen for
353s many reasons, often due to issues with your setup or how NumPy was
353s installed.
353s 
353s We have compiled some common reasons and troubleshooting tips at:
353s 
353s     https://numpy.org/devdocs/user/troubleshooting-importerror.html
353s 
353s Please note and check the following:
353s 
353s   * The Python version is: Python3.13 from "/usr/bin/python3.13"
353s   * The NumPy version is: "1.26.4"
353s 
353s and make sure that they are the versions you expect.
353s Please carefully study the documentation linked above for further help.
353s 
353s Original error was: No module named 'numpy.core._multiarray_umath'
353s 
353s 
353s The above exception was the direct cause of the following exception:
353s 
353s Traceback (most recent call last):
353s   File "<string>", line 1, in <module>
353s     import nipy; print(nipy)
353s     ^^^^^^^^^^^
353s   File "/usr/lib/python3/dist-packages/nipy/__init__.py", line 30, in <module>
353s     from nipy.core.api import is_image
353s   File "/usr/lib/python3/dist-packages/nipy/core/api.py", line 14, in <module>
353s     from .image.image import (
353s     ...<7 lines>...
353s     )
353s   File "/usr/lib/python3/dist-packages/nipy/core/image/__init__.py", line 13, in <module>
353s     from . import image
353s   File "/usr/lib/python3/dist-packages/nipy/core/image/image.py", line 19, in <module>
353s     import numpy as np
353s   File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in <module>
353s     raise ImportError(msg) from e
353s ImportError: Error importing numpy: you should not try to import numpy from
353s         its source directory; please exit the numpy source tree, and relaunch
353s         your python interpreter from there.
353s autopkgtest [09:48:58]: test autodep8-python3: -----------------------]
354s autopkgtest [09:48:59]: test autodep8-python3:  - - - - - - - - - - results - - - - - - - - - -
354s autodep8-python3     FAIL non-zero exit status 1
354s autopkgtest [09:48:59]: @@@@@@@@@@@@@@@@@@@@ summary
354s command1             PASS
354s autodep8-python3     FAIL non-zero exit status 1
381s nova [W] Skipping flock in bos03-arm64
381s Creating nova instance adt-plucky-arm64-nipy-20241113-094304-juju-7f2275-prod-proposed-migration-environment-20-1d479f81-077d-4bd7-910f-bd2d87ac37e2 from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)...
381s nova [W] Skipping flock in bos03-arm64
381s Creating nova instance adt-plucky-arm64-nipy-20241113-094304-juju-7f2275-prod-proposed-migration-environment-20-1d479f81-077d-4bd7-910f-bd2d87ac37e2 from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)...