0s autopkgtest [13:06:13]: starting date and time: 2025-03-22 13:06:13+0000
  0s autopkgtest [13:06:13]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [13:06:13]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.unb03dfb/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:last-align --apt-upgrade nanook --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=last-align/1609-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-5.secgroup --name adt-plucky-arm64-nanook-20250322-130613-juju-7f2275-prod-proposed-migration-environment-2-ebefab47-ba13-41df-9c79-44b5e60ade27 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
144s autopkgtest [13:08:37]: testbed dpkg architecture: arm64
145s autopkgtest [13:08:38]: testbed apt version: 2.9.33
145s autopkgtest [13:08:38]: @@@@@@@@@@@@@@@@@@@@ test bed setup
145s autopkgtest [13:08:38]: testbed release detected to be: None
146s autopkgtest [13:08:39]: updating testbed package index (apt update)
146s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
147s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
147s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
147s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
147s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [11.5 kB]
147s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [29.9 kB]
147s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [1232 B]
147s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [288 kB]
147s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [38.0 kB]
147s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1292 B]
147s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B]
147s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [192 kB]
148s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [11.1 kB]
148s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [3244 B]
148s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [316 B]
150s Fetched 703 kB in 2s (456 kB/s)
150s Reading package lists...
151s autopkgtest [13:08:44]: upgrading testbed (apt dist-upgrade and autopurge)
151s Reading package lists...
152s Building dependency tree...
152s Reading state information...
152s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
152s Starting 2 pkgProblemResolver with broken count: 0
152s Done
153s Entering ResolveByKeep
153s 
153s Calculating upgrade...
154s The following packages will be upgraded:
154s   apparmor apt apt-utils dpkg dpkg-dev flash-kernel fwupd gcc-14-base
154s   ibverbs-providers libapparmor1 libapt-pkg7.0 libdpkg-perl libfwupd3
154s   libibverbs1
154s 14 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
154s Need to get 12.0 MB of archives.
154s After this operation, 90.1 kB of additional disk space will be used.
154s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libapt-pkg7.0 arm64 2.9.34 [1030 kB]
156s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 dpkg arm64 1.22.18ubuntu2 [1291 kB]
156s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 apt arm64 2.9.34 [1368 kB]
156s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 apt-utils arm64 2.9.34 [207 kB]
156s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-base arm64 14.2.0-19ubuntu1 [54.0 kB]
156s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libapparmor1 arm64 4.1.0~beta5-0ubuntu11 [54.4 kB]
156s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 apparmor arm64 4.1.0~beta5-0ubuntu11 [662 kB]
156s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libibverbs1 arm64 56.0-3ubuntu1 [67.9 kB]
156s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 ibverbs-providers arm64 56.0-3ubuntu1 [388 kB]
156s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 dpkg-dev all 1.22.18ubuntu2 [1089 kB]
156s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libdpkg-perl all 1.22.18ubuntu2 [281 kB]
156s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 flash-kernel arm64 3.108ubuntu2 [49.8 kB]
156s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 fwupd arm64 2.0.6-7 [5287 kB]
157s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libfwupd3 arm64 2.0.6-7 [129 kB]
157s Preconfiguring packages ...
157s Fetched 12.0 MB in 3s (4057 kB/s)
158s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 117729 files and directories currently installed.)
158s Preparing to unpack .../libapt-pkg7.0_2.9.34_arm64.deb ...
158s Unpacking libapt-pkg7.0:arm64 (2.9.34) over (2.9.33) ...
158s Setting up libapt-pkg7.0:arm64 (2.9.34) ...
158s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 117729 files and directories currently installed.)
158s Preparing to unpack .../dpkg_1.22.18ubuntu2_arm64.deb ...
158s Unpacking dpkg (1.22.18ubuntu2) over (1.22.15ubuntu1) ...
158s Setting up dpkg (1.22.18ubuntu2) ...
159s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 117728 files and directories currently installed.)
159s Preparing to unpack .../archives/apt_2.9.34_arm64.deb ...
159s Unpacking apt (2.9.34) over (2.9.33) ...
159s Setting up apt (2.9.34) ...
160s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 117728 files and directories currently installed.)
160s Preparing to unpack .../00-apt-utils_2.9.34_arm64.deb ...
160s Unpacking apt-utils (2.9.34) over (2.9.33) ...
160s Preparing to unpack .../01-gcc-14-base_14.2.0-19ubuntu1_arm64.deb ...
160s Unpacking gcc-14-base:arm64 (14.2.0-19ubuntu1) over (14.2.0-17ubuntu3) ...
160s Preparing to unpack .../02-libapparmor1_4.1.0~beta5-0ubuntu11_arm64.deb ...
160s Unpacking libapparmor1:arm64 (4.1.0~beta5-0ubuntu11) over (4.1.0~beta5-0ubuntu9) ...
160s Preparing to unpack .../03-apparmor_4.1.0~beta5-0ubuntu11_arm64.deb ...
161s Unpacking apparmor (4.1.0~beta5-0ubuntu11) over (4.1.0~beta5-0ubuntu9) ...
161s Preparing to unpack .../04-libibverbs1_56.0-3ubuntu1_arm64.deb ...
161s Unpacking libibverbs1:arm64 (56.0-3ubuntu1) over (55.0-1ubuntu1) ...
161s Preparing to unpack .../05-ibverbs-providers_56.0-3ubuntu1_arm64.deb ...
161s Unpacking ibverbs-providers:arm64 (56.0-3ubuntu1) over (55.0-1ubuntu1) ...
162s Preparing to unpack .../06-dpkg-dev_1.22.18ubuntu2_all.deb ...
162s Unpacking dpkg-dev (1.22.18ubuntu2) over (1.22.15ubuntu1) ...
162s Preparing to unpack .../07-libdpkg-perl_1.22.18ubuntu2_all.deb ...
162s Unpacking libdpkg-perl (1.22.18ubuntu2) over (1.22.15ubuntu1) ...
162s Preparing to unpack .../08-flash-kernel_3.108ubuntu2_arm64.deb ...
162s Unpacking flash-kernel (3.108ubuntu2) over (3.108ubuntu1) ...
162s Preparing to unpack .../09-fwupd_2.0.6-7_arm64.deb ...
162s Unpacking fwupd (2.0.6-7) over (2.0.6-6) ...
162s Preparing to unpack .../10-libfwupd3_2.0.6-7_arm64.deb ...
162s Unpacking libfwupd3:arm64 (2.0.6-7) over (2.0.6-6) ...
162s Setting up libibverbs1:arm64 (56.0-3ubuntu1) ...
162s Setting up libapparmor1:arm64 (4.1.0~beta5-0ubuntu11) ...
162s Setting up apt-utils (2.9.34) ...
162s Setting up flash-kernel (3.108ubuntu2) ...
163s flash-kernel: deferring update (trigger activated)
163s Setting up ibverbs-providers:arm64 (56.0-3ubuntu1) ...
163s Setting up gcc-14-base:arm64 (14.2.0-19ubuntu1) ...
163s Setting up libfwupd3:arm64 (2.0.6-7) ...
163s Setting up apparmor (4.1.0~beta5-0ubuntu11) ...
164s Reloading AppArmor profiles 
165s Setting up libdpkg-perl (1.22.18ubuntu2) ...
165s Setting up fwupd (2.0.6-7) ...
166s fwupd-refresh.service is a disabled or a static unit not running, not starting it.
166s fwupd.service is a disabled or a static unit not running, not starting it.
166s Setting up dpkg-dev (1.22.18ubuntu2) ...
166s Processing triggers for initramfs-tools (0.146ubuntu1) ...
166s update-initramfs: Generating /boot/initrd.img-6.14.0-11-generic
166s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
187s System running in EFI mode, skipping.
187s Processing triggers for libc-bin (2.41-1ubuntu2) ...
187s Processing triggers for systemd (257.4-1ubuntu1) ...
187s Processing triggers for man-db (2.13.0-1) ...
189s Processing triggers for dbus (1.16.2-2ubuntu1) ...
189s Processing triggers for flash-kernel (3.108ubuntu2) ...
189s System running in EFI mode, skipping.
190s Reading package lists...
190s Building dependency tree...
190s Reading state information...
191s Starting pkgProblemResolver with broken count: 0
191s Starting 2 pkgProblemResolver with broken count: 0
191s Done
191s Solving dependencies...
192s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
192s autopkgtest [13:09:25]: rebooting testbed after setup commands that affected boot
216s autopkgtest [13:09:49]: testbed running kernel: Linux 6.14.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Mon Mar 17 12:19:09 UTC 2025
219s autopkgtest [13:09:52]: @@@@@@@@@@@@@@@@@@@@ apt-source nanook
222s Get:1 http://ftpmaster.internal/ubuntu plucky/universe nanook 1.33+dfsg-6 (dsc) [2220 B]
222s Get:2 http://ftpmaster.internal/ubuntu plucky/universe nanook 1.33+dfsg-6 (tar) [95.2 kB]
222s Get:3 http://ftpmaster.internal/ubuntu plucky/universe nanook 1.33+dfsg-6 (diff) [1818 kB]
222s gpgv: Signature made Wed Dec 18 14:21:48 2024 UTC
222s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
222s gpgv:                issuer "emollier@debian.org"
222s gpgv: Can't check signature: No public key
222s dpkg-source: warning: cannot verify inline signature for ./nanook_1.33+dfsg-6.dsc: no acceptable signature found
222s autopkgtest [13:09:55]: testing package nanook version 1.33+dfsg-6
223s autopkgtest [13:09:56]: build not needed
223s autopkgtest [13:09:56]: test run-unit-test: preparing testbed
223s Reading package lists...
224s Building dependency tree...
224s Reading state information...
224s Starting pkgProblemResolver with broken count: 0
224s Starting 2 pkgProblemResolver with broken count: 0
224s Done
225s The following NEW packages will be installed:
225s   ca-certificates-java default-jre-headless fontconfig fontconfig-config
225s   fonts-dejavu-core fonts-dejavu-mono fonts-lmodern hdf5-tools java-common
225s   last-align libaec0 libapache-pom-java libblas3 libcairo2 libcommons-io-java
225s   libcommons-parent-java libdatrie1 libdeflate0 libfontconfig1 libgfortran5
225s   libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-310 libhdf5-hl-310 libice6
225s   libjbig0 libjpeg-turbo8 libjpeg8 libkpathsea6 liblapack3 liblcms2-2 liblerc4
225s   libmpfi0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
225s   libpaper2 libpcsclite1 libpixman-1-0 libpotrace0 libptexenc1 libsharpyuv0
225s   libsm6 libsynctex2 libsz2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data
225s   libthai0 libtiff6 libtk8.6 libwebp7 libxaw7 libxcb-render0 libxcb-shm0
225s   libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64
225s   littler nanook nanook-examples openjdk-21-jre-headless r-base-core
225s   r-cran-cli r-cran-colorspace r-cran-fansi r-cran-farver r-cran-ggplot2
225s   r-cran-glue r-cran-gridextra r-cran-gtable r-cran-isoband r-cran-labeling
225s   r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass
225s   r-cran-matrix r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar
225s   r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-r6 r-cran-rcolorbrewer
225s   r-cran-rcpp r-cran-reshape r-cran-rlang r-cran-scales r-cran-tibble
225s   r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr t1utils tex-common
225s   texlive-base texlive-binaries texlive-latex-base unzip x11-common xdg-utils
225s   zip
225s 0 upgraded, 114 newly installed, 0 to remove and 0 not upgraded.
225s Need to get 161 MB of archives.
225s After this operation, 472 MB of additional disk space will be used.
225s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 ca-certificates-java all 20240118 [11.6 kB]
225s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 java-common all 0.76 [6852 B]
225s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB]
225s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB]
225s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
225s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcsclite1 arm64 2.3.1-1 [25.0 kB]
225s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 openjdk-21-jre-headless arm64 21.0.7~7ea-1 [45.7 MB]
228s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 default-jre-headless arm64 2:1.21-76 [3176 B]
228s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
228s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
228s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2.1ubuntu1 [37.7 kB]
228s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2.1ubuntu1 [144 kB]
228s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2.1ubuntu1 [191 kB]
228s Get:14 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lmodern all 2.005-1 [4799 kB]
228s Get:15 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB]
228s Get:16 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B]
228s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-310 arm64 1.14.5+repack-3 [1331 kB]
228s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [59.8 kB]
228s Get:19 http://ftpmaster.internal/ubuntu plucky/universe arm64 hdf5-tools arm64 1.14.5+repack-3 [366 kB]
228s Get:20 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 last-align arm64 1609-1 [842 kB]
228s Get:21 http://ftpmaster.internal/ubuntu plucky/universe arm64 libapache-pom-java all 33-2 [5874 B]
228s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB]
228s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB]
228s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB]
228s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B]
228s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB]
228s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.4-1 [560 kB]
229s Get:28 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcommons-parent-java all 56-1 [10.7 kB]
229s Get:29 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcommons-io-java all 2.18.0-1 [477 kB]
229s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB]
229s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB]
229s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250315-1ubuntu1 [443 kB]
229s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250315-1ubuntu1 [147 kB]
229s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB]
229s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB]
229s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
229s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB]
229s Get:38 http://ftpmaster.internal/ubuntu plucky/universe arm64 libkpathsea6 arm64 2024.20240313.70630+ds-6 [64.4 kB]
229s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB]
229s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB]
229s Get:41 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmpfi0 arm64 1.5.4+ds-4 [35.3 kB]
229s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB]
229s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB]
229s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.3-1 [238 kB]
229s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.3-1 [49.8 kB]
229s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.3-1 [27.6 kB]
229s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB]
229s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB]
229s Get:49 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpotrace0 arm64 1.16-2build1 [16.0 kB]
229s Get:50 http://ftpmaster.internal/ubuntu plucky/universe arm64 libptexenc1 arm64 2024.20240313.70630+ds-6 [41.7 kB]
229s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB]
229s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB]
229s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsynctex2 arm64 2024.20240313.70630+ds-6 [60.4 kB]
229s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB]
229s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB]
229s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtexlua53-5 arm64 2024.20240313.70630+ds-6 [122 kB]
229s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB]
229s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB]
229s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB]
229s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB]
229s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B]
229s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB]
229s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB]
229s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libxmu6 arm64 2:1.1.3-3build2 [47.5 kB]
229s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libxpm4 arm64 1:3.5.17-1build2 [35.1 kB]
229s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libxaw7 arm64 2:1.0.16-1 [184 kB]
229s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libxi6 arm64 2:1.8.2-1 [32.4 kB]
229s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.1 [30.8 kB]
229s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB]
229s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB]
229s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
229s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB]
232s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB]
232s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B]
232s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB]
232s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB]
232s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB]
232s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
232s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB]
232s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB]
232s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mass arm64 7.3-64-1 [1110 kB]
232s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB]
232s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-nlme arm64 3.1.167-1 [2311 kB]
232s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB]
233s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB]
233s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-farver arm64 2.1.2-1 [1344 kB]
233s Get:87 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB]
233s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-colorspace arm64 2.1-1+dfsg-1 [1563 kB]
233s Get:89 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-munsell all 0.5.1-1 [213 kB]
233s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB]
233s Get:91 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
233s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB]
233s Get:93 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-scales all 1.3.0-1 [603 kB]
233s Get:94 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fansi arm64 1.0.6-1ubuntu1 [628 kB]
233s Get:95 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB]
233s Get:96 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB]
233s Get:97 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB]
233s Get:98 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB]
233s Get:99 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
233s Get:100 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB]
234s Get:101 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
234s Get:102 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB]
234s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-gridextra all 2.3-3build1 [1024 kB]
235s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
235s Get:105 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB]
235s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB]
235s Get:107 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-reshape all 0.8.9-1 [168 kB]
235s Get:108 http://ftpmaster.internal/ubuntu plucky/universe arm64 tex-common all 6.19 [29.8 kB]
235s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 t1utils arm64 1.41-4build3 [61.0 kB]
235s Get:110 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-binaries arm64 2024.20240313.70630+ds-6 [8349 kB]
235s Get:111 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-base all 2024.20250309-1 [22.7 MB]
237s Get:112 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-latex-base all 2024.20250309-1 [1276 kB]
237s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 nanook all 1.33+dfsg-6 [195 kB]
237s Get:114 http://ftpmaster.internal/ubuntu plucky/universe arm64 nanook-examples all 1.33+dfsg-6 [1814 kB]
237s Preconfiguring packages ...
237s Fetched 161 MB in 12s (13.6 MB/s)
237s Selecting previously unselected package ca-certificates-java.
238s (Reading database ... 
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(Reading database ... 117732 files and directories currently installed.)
238s Preparing to unpack .../000-ca-certificates-java_20240118_all.deb ...
238s Unpacking ca-certificates-java (20240118) ...
238s Selecting previously unselected package java-common.
238s Preparing to unpack .../001-java-common_0.76_all.deb ...
238s Unpacking java-common (0.76) ...
238s Selecting previously unselected package liblcms2-2:arm64.
238s Preparing to unpack .../002-liblcms2-2_2.16-2_arm64.deb ...
238s Unpacking liblcms2-2:arm64 (2.16-2) ...
238s Selecting previously unselected package libjpeg-turbo8:arm64.
238s Preparing to unpack .../003-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ...
238s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ...
238s Selecting previously unselected package libjpeg8:arm64.
238s Preparing to unpack .../004-libjpeg8_8c-2ubuntu11_arm64.deb ...
238s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
238s Selecting previously unselected package libpcsclite1:arm64.
238s Preparing to unpack .../005-libpcsclite1_2.3.1-1_arm64.deb ...
238s Unpacking libpcsclite1:arm64 (2.3.1-1) ...
238s Selecting previously unselected package openjdk-21-jre-headless:arm64.
238s Preparing to unpack .../006-openjdk-21-jre-headless_21.0.7~7ea-1_arm64.deb ...
238s Unpacking openjdk-21-jre-headless:arm64 (21.0.7~7ea-1) ...
239s Selecting previously unselected package default-jre-headless.
239s Preparing to unpack .../007-default-jre-headless_2%3a1.21-76_arm64.deb ...
239s Unpacking default-jre-headless (2:1.21-76) ...
239s Selecting previously unselected package fonts-dejavu-mono.
239s Preparing to unpack .../008-fonts-dejavu-mono_2.37-8_all.deb ...
239s Unpacking fonts-dejavu-mono (2.37-8) ...
239s Selecting previously unselected package fonts-dejavu-core.
239s Preparing to unpack .../009-fonts-dejavu-core_2.37-8_all.deb ...
239s Unpacking fonts-dejavu-core (2.37-8) ...
239s Selecting previously unselected package fontconfig-config.
239s Preparing to unpack .../010-fontconfig-config_2.15.0-2.1ubuntu1_arm64.deb ...
240s Unpacking fontconfig-config (2.15.0-2.1ubuntu1) ...
240s Selecting previously unselected package libfontconfig1:arm64.
240s Preparing to unpack .../011-libfontconfig1_2.15.0-2.1ubuntu1_arm64.deb ...
240s Unpacking libfontconfig1:arm64 (2.15.0-2.1ubuntu1) ...
240s Selecting previously unselected package fontconfig.
240s Preparing to unpack .../012-fontconfig_2.15.0-2.1ubuntu1_arm64.deb ...
240s Unpacking fontconfig (2.15.0-2.1ubuntu1) ...
240s Selecting previously unselected package fonts-lmodern.
240s Preparing to unpack .../013-fonts-lmodern_2.005-1_all.deb ...
240s Unpacking fonts-lmodern (2.005-1) ...
240s Selecting previously unselected package libaec0:arm64.
240s Preparing to unpack .../014-libaec0_1.1.3-1_arm64.deb ...
240s Unpacking libaec0:arm64 (1.1.3-1) ...
240s Selecting previously unselected package libsz2:arm64.
240s Preparing to unpack .../015-libsz2_1.1.3-1_arm64.deb ...
240s Unpacking libsz2:arm64 (1.1.3-1) ...
240s Selecting previously unselected package libhdf5-310:arm64.
240s Preparing to unpack .../016-libhdf5-310_1.14.5+repack-3_arm64.deb ...
240s Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ...
240s Selecting previously unselected package libhdf5-hl-310:arm64.
240s Preparing to unpack .../017-libhdf5-hl-310_1.14.5+repack-3_arm64.deb ...
240s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3) ...
240s Selecting previously unselected package hdf5-tools.
240s Preparing to unpack .../018-hdf5-tools_1.14.5+repack-3_arm64.deb ...
240s Unpacking hdf5-tools (1.14.5+repack-3) ...
240s Selecting previously unselected package last-align.
240s Preparing to unpack .../019-last-align_1609-1_arm64.deb ...
240s Unpacking last-align (1609-1) ...
240s Selecting previously unselected package libapache-pom-java.
240s Preparing to unpack .../020-libapache-pom-java_33-2_all.deb ...
240s Unpacking libapache-pom-java (33-2) ...
240s Selecting previously unselected package libblas3:arm64.
240s Preparing to unpack .../021-libblas3_3.12.1-2_arm64.deb ...
240s Unpacking libblas3:arm64 (3.12.1-2) ...
240s Selecting previously unselected package libpixman-1-0:arm64.
240s Preparing to unpack .../022-libpixman-1-0_0.44.0-3_arm64.deb ...
240s Unpacking libpixman-1-0:arm64 (0.44.0-3) ...
240s Selecting previously unselected package libxcb-render0:arm64.
240s Preparing to unpack .../023-libxcb-render0_1.17.0-2_arm64.deb ...
240s Unpacking libxcb-render0:arm64 (1.17.0-2) ...
240s Selecting previously unselected package libxcb-shm0:arm64.
240s Preparing to unpack .../024-libxcb-shm0_1.17.0-2_arm64.deb ...
240s Unpacking libxcb-shm0:arm64 (1.17.0-2) ...
240s Selecting previously unselected package libxrender1:arm64.
241s Preparing to unpack .../025-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ...
241s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ...
241s Selecting previously unselected package libcairo2:arm64.
241s Preparing to unpack .../026-libcairo2_1.18.4-1_arm64.deb ...
241s Unpacking libcairo2:arm64 (1.18.4-1) ...
241s Selecting previously unselected package libcommons-parent-java.
241s Preparing to unpack .../027-libcommons-parent-java_56-1_all.deb ...
241s Unpacking libcommons-parent-java (56-1) ...
241s Selecting previously unselected package libcommons-io-java.
241s Preparing to unpack .../028-libcommons-io-java_2.18.0-1_all.deb ...
241s Unpacking libcommons-io-java (2.18.0-1) ...
241s Selecting previously unselected package libdatrie1:arm64.
241s Preparing to unpack .../029-libdatrie1_0.2.13-3build1_arm64.deb ...
241s Unpacking libdatrie1:arm64 (0.2.13-3build1) ...
241s Selecting previously unselected package libdeflate0:arm64.
241s Preparing to unpack .../030-libdeflate0_1.23-1_arm64.deb ...
241s Unpacking libdeflate0:arm64 (1.23-1) ...
241s Selecting previously unselected package libgfortran5:arm64.
241s Preparing to unpack .../031-libgfortran5_15-20250315-1ubuntu1_arm64.deb ...
241s Unpacking libgfortran5:arm64 (15-20250315-1ubuntu1) ...
241s Selecting previously unselected package libgomp1:arm64.
241s Preparing to unpack .../032-libgomp1_15-20250315-1ubuntu1_arm64.deb ...
241s Unpacking libgomp1:arm64 (15-20250315-1ubuntu1) ...
241s Selecting previously unselected package libgraphite2-3:arm64.
241s Preparing to unpack .../033-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ...
241s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
241s Selecting previously unselected package libharfbuzz0b:arm64.
241s Preparing to unpack .../034-libharfbuzz0b_10.2.0-1_arm64.deb ...
241s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ...
241s Selecting previously unselected package x11-common.
241s Preparing to unpack .../035-x11-common_1%3a7.7+23ubuntu3_all.deb ...
241s Unpacking x11-common (1:7.7+23ubuntu3) ...
241s Selecting previously unselected package libice6:arm64.
241s Preparing to unpack .../036-libice6_2%3a1.1.1-1_arm64.deb ...
241s Unpacking libice6:arm64 (2:1.1.1-1) ...
241s Selecting previously unselected package libkpathsea6:arm64.
241s Preparing to unpack .../037-libkpathsea6_2024.20240313.70630+ds-6_arm64.deb ...
241s Unpacking libkpathsea6:arm64 (2024.20240313.70630+ds-6) ...
241s Selecting previously unselected package liblapack3:arm64.
241s Preparing to unpack .../038-liblapack3_3.12.1-2_arm64.deb ...
241s Unpacking liblapack3:arm64 (3.12.1-2) ...
241s Selecting previously unselected package liblerc4:arm64.
241s Preparing to unpack .../039-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ...
241s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
241s Selecting previously unselected package libmpfi0:arm64.
241s Preparing to unpack .../040-libmpfi0_1.5.4+ds-4_arm64.deb ...
241s Unpacking libmpfi0:arm64 (1.5.4+ds-4) ...
241s Selecting previously unselected package libthai-data.
241s Preparing to unpack .../041-libthai-data_0.1.29-2build1_all.deb ...
241s Unpacking libthai-data (0.1.29-2build1) ...
241s Selecting previously unselected package libthai0:arm64.
241s Preparing to unpack .../042-libthai0_0.1.29-2build1_arm64.deb ...
241s Unpacking libthai0:arm64 (0.1.29-2build1) ...
241s Selecting previously unselected package libpango-1.0-0:arm64.
241s Preparing to unpack .../043-libpango-1.0-0_1.56.3-1_arm64.deb ...
241s Unpacking libpango-1.0-0:arm64 (1.56.3-1) ...
241s Selecting previously unselected package libpangoft2-1.0-0:arm64.
241s Preparing to unpack .../044-libpangoft2-1.0-0_1.56.3-1_arm64.deb ...
241s Unpacking libpangoft2-1.0-0:arm64 (1.56.3-1) ...
241s Selecting previously unselected package libpangocairo-1.0-0:arm64.
242s Preparing to unpack .../045-libpangocairo-1.0-0_1.56.3-1_arm64.deb ...
242s Unpacking libpangocairo-1.0-0:arm64 (1.56.3-1) ...
242s Selecting previously unselected package libpaper2:arm64.
242s Preparing to unpack .../046-libpaper2_2.2.5-0.3_arm64.deb ...
242s Unpacking libpaper2:arm64 (2.2.5-0.3) ...
242s Selecting previously unselected package libpaper-utils.
242s Preparing to unpack .../047-libpaper-utils_2.2.5-0.3_arm64.deb ...
242s Unpacking libpaper-utils (2.2.5-0.3) ...
242s Selecting previously unselected package libpotrace0:arm64.
242s Preparing to unpack .../048-libpotrace0_1.16-2build1_arm64.deb ...
242s Unpacking libpotrace0:arm64 (1.16-2build1) ...
242s Selecting previously unselected package libptexenc1:arm64.
242s Preparing to unpack .../049-libptexenc1_2024.20240313.70630+ds-6_arm64.deb ...
242s Unpacking libptexenc1:arm64 (2024.20240313.70630+ds-6) ...
242s Selecting previously unselected package libsharpyuv0:arm64.
242s Preparing to unpack .../050-libsharpyuv0_1.5.0-0.1_arm64.deb ...
242s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ...
242s Selecting previously unselected package libsm6:arm64.
242s Preparing to unpack .../051-libsm6_2%3a1.2.4-1_arm64.deb ...
242s Unpacking libsm6:arm64 (2:1.2.4-1) ...
242s Selecting previously unselected package libsynctex2:arm64.
242s Preparing to unpack .../052-libsynctex2_2024.20240313.70630+ds-6_arm64.deb ...
242s Unpacking libsynctex2:arm64 (2024.20240313.70630+ds-6) ...
242s Selecting previously unselected package libtcl8.6:arm64.
242s Preparing to unpack .../053-libtcl8.6_8.6.16+dfsg-1_arm64.deb ...
242s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ...
242s Selecting previously unselected package libteckit0:arm64.
242s Preparing to unpack .../054-libteckit0_2.5.12+ds1-1_arm64.deb ...
242s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ...
242s Selecting previously unselected package libtexlua53-5:arm64.
242s Preparing to unpack .../055-libtexlua53-5_2024.20240313.70630+ds-6_arm64.deb ...
242s Unpacking libtexlua53-5:arm64 (2024.20240313.70630+ds-6) ...
242s Selecting previously unselected package libjbig0:arm64.
242s Preparing to unpack .../056-libjbig0_2.1-6.1ubuntu2_arm64.deb ...
242s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ...
242s Selecting previously unselected package libwebp7:arm64.
242s Preparing to unpack .../057-libwebp7_1.5.0-0.1_arm64.deb ...
242s Unpacking libwebp7:arm64 (1.5.0-0.1) ...
242s Selecting previously unselected package libtiff6:arm64.
242s Preparing to unpack .../058-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ...
242s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ...
242s Selecting previously unselected package libxft2:arm64.
242s Preparing to unpack .../059-libxft2_2.3.6-1build1_arm64.deb ...
242s Unpacking libxft2:arm64 (2.3.6-1build1) ...
242s Selecting previously unselected package libxss1:arm64.
242s Preparing to unpack .../060-libxss1_1%3a1.2.3-1build3_arm64.deb ...
242s Unpacking libxss1:arm64 (1:1.2.3-1build3) ...
242s Selecting previously unselected package libtk8.6:arm64.
242s Preparing to unpack .../061-libtk8.6_8.6.16-1_arm64.deb ...
242s Unpacking libtk8.6:arm64 (8.6.16-1) ...
242s Selecting previously unselected package libxt6t64:arm64.
242s Preparing to unpack .../062-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ...
242s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ...
242s Selecting previously unselected package libxmu6:arm64.
242s Preparing to unpack .../063-libxmu6_2%3a1.1.3-3build2_arm64.deb ...
242s Unpacking libxmu6:arm64 (2:1.1.3-3build2) ...
242s Selecting previously unselected package libxpm4:arm64.
242s Preparing to unpack .../064-libxpm4_1%3a3.5.17-1build2_arm64.deb ...
242s Unpacking libxpm4:arm64 (1:3.5.17-1build2) ...
242s Selecting previously unselected package libxaw7:arm64.
242s Preparing to unpack .../065-libxaw7_2%3a1.0.16-1_arm64.deb ...
242s Unpacking libxaw7:arm64 (2:1.0.16-1) ...
243s Selecting previously unselected package libxi6:arm64.
243s Preparing to unpack .../066-libxi6_2%3a1.8.2-1_arm64.deb ...
243s Unpacking libxi6:arm64 (2:1.8.2-1) ...
243s Selecting previously unselected package libzzip-0-13t64:arm64.
243s Preparing to unpack .../067-libzzip-0-13t64_0.13.78+dfsg.1-0.1_arm64.deb ...
243s Unpacking libzzip-0-13t64:arm64 (0.13.78+dfsg.1-0.1) ...
243s Selecting previously unselected package zip.
243s Preparing to unpack .../068-zip_3.0-14ubuntu2_arm64.deb ...
243s Unpacking zip (3.0-14ubuntu2) ...
243s Selecting previously unselected package unzip.
243s Preparing to unpack .../069-unzip_6.0-28ubuntu6_arm64.deb ...
243s Unpacking unzip (6.0-28ubuntu6) ...
243s Selecting previously unselected package xdg-utils.
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243s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
243s Selecting previously unselected package r-base-core.
243s Preparing to unpack .../071-r-base-core_4.4.3-1_arm64.deb ...
243s Unpacking r-base-core (4.4.3-1) ...
243s Selecting previously unselected package r-cran-littler.
243s Preparing to unpack .../072-r-cran-littler_0.3.20-2_arm64.deb ...
243s Unpacking r-cran-littler (0.3.20-2) ...
243s Selecting previously unselected package littler.
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243s Unpacking littler (0.3.20-2) ...
243s Selecting previously unselected package r-cran-cli.
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243s Unpacking r-cran-cli (3.6.4-1) ...
243s Selecting previously unselected package r-cran-glue.
243s Preparing to unpack .../075-r-cran-glue_1.8.0-1_arm64.deb ...
243s Unpacking r-cran-glue (1.8.0-1) ...
243s Selecting previously unselected package r-cran-rlang.
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243s Unpacking r-cran-rlang (1.1.5-1) ...
243s Selecting previously unselected package r-cran-lifecycle.
243s Preparing to unpack .../077-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
243s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
243s Selecting previously unselected package r-cran-gtable.
243s Preparing to unpack .../078-r-cran-gtable_0.3.6+dfsg-1_all.deb ...
243s Unpacking r-cran-gtable (0.3.6+dfsg-1) ...
244s Selecting previously unselected package r-cran-isoband.
244s Preparing to unpack .../079-r-cran-isoband_0.2.7-1_arm64.deb ...
244s Unpacking r-cran-isoband (0.2.7-1) ...
244s Selecting previously unselected package r-cran-mass.
244s Preparing to unpack .../080-r-cran-mass_7.3-64-1_arm64.deb ...
244s Unpacking r-cran-mass (7.3-64-1) ...
244s Selecting previously unselected package r-cran-lattice.
244s Preparing to unpack .../081-r-cran-lattice_0.22-6-1_arm64.deb ...
244s Unpacking r-cran-lattice (0.22-6-1) ...
244s Selecting previously unselected package r-cran-nlme.
244s Preparing to unpack .../082-r-cran-nlme_3.1.167-1_arm64.deb ...
244s Unpacking r-cran-nlme (3.1.167-1) ...
244s Selecting previously unselected package r-cran-matrix.
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244s Unpacking r-cran-matrix (1.7-3-1) ...
244s Selecting previously unselected package r-cran-mgcv.
244s Preparing to unpack .../084-r-cran-mgcv_1.9-1-1_arm64.deb ...
244s Unpacking r-cran-mgcv (1.9-1-1) ...
244s Selecting previously unselected package r-cran-farver.
244s Preparing to unpack .../085-r-cran-farver_2.1.2-1_arm64.deb ...
244s Unpacking r-cran-farver (2.1.2-1) ...
244s Selecting previously unselected package r-cran-labeling.
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244s Unpacking r-cran-labeling (0.4.3-1) ...
244s Selecting previously unselected package r-cran-colorspace.
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244s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ...
244s Selecting previously unselected package r-cran-munsell.
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244s Unpacking r-cran-munsell (0.5.1-1) ...
244s Selecting previously unselected package r-cran-r6.
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244s Unpacking r-cran-r6 (2.6.1-1) ...
244s Selecting previously unselected package r-cran-rcolorbrewer.
244s Preparing to unpack .../090-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ...
244s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ...
244s Selecting previously unselected package r-cran-viridislite.
244s Preparing to unpack .../091-r-cran-viridislite_0.4.2-2_all.deb ...
244s Unpacking r-cran-viridislite (0.4.2-2) ...
244s Selecting previously unselected package r-cran-scales.
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244s Unpacking r-cran-scales (1.3.0-1) ...
244s Selecting previously unselected package r-cran-fansi.
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244s Unpacking r-cran-fansi (1.0.6-1ubuntu1) ...
244s Selecting previously unselected package r-cran-magrittr.
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244s Unpacking r-cran-magrittr (2.0.3-1) ...
244s Selecting previously unselected package r-cran-utf8.
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245s Unpacking r-cran-utf8 (1.2.4-1) ...
245s Selecting previously unselected package r-cran-vctrs.
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245s Selecting previously unselected package r-cran-pillar.
245s Preparing to unpack .../097-r-cran-pillar_1.10.1+dfsg-1_all.deb ...
245s Unpacking r-cran-pillar (1.10.1+dfsg-1) ...
245s Selecting previously unselected package r-cran-pkgconfig.
245s Preparing to unpack .../098-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
245s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
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245s Selecting previously unselected package r-cran-withr.
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245s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
245s Selecting previously unselected package r-cran-ggplot2.
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245s Selecting previously unselected package r-cran-gridextra.
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245s Unpacking r-cran-gridextra (2.3-3build1) ...
245s Selecting previously unselected package r-cran-pkgkitten.
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245s Unpacking r-cran-pkgkitten (0.2.4-1) ...
245s Selecting previously unselected package r-cran-rcpp.
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245s Selecting previously unselected package r-cran-plyr.
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245s Selecting previously unselected package r-cran-reshape.
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247s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
247s Setting up liblcms2-2:arm64 (2.16-2) ...
247s Setting up libpixman-1-0:arm64 (0.44.0-3) ...
247s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ...
247s Setting up nanook-examples (1.33+dfsg-6) ...
247s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
247s Setting up libxpm4:arm64 (1:3.5.17-1build2) ...
247s Setting up libxi6:arm64 (2:1.8.2-1) ...
247s Setting up java-common (0.76) ...
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247s Setting up libdatrie1:arm64 (0.2.13-3build1) ...
247s Setting up libxcb-render0:arm64 (1.17.0-2) ...
247s Setting up unzip (6.0-28ubuntu6) ...
247s Setting up x11-common (1:7.7+23ubuntu3) ...
248s Setting up libdeflate0:arm64 (1.23-1) ...
248s Setting up libxcb-shm0:arm64 (1.17.0-2) ...
248s Setting up libgomp1:arm64 (15-20250315-1ubuntu1) ...
248s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ...
248s Setting up libaec0:arm64 (1.1.3-1) ...
248s Setting up last-align (1609-1) ...
248s Setting up tex-common (6.19) ...
248s update-language: texlive-base not installed and configured, doing nothing!
248s Setting up zip (3.0-14ubuntu2) ...
248s Setting up libblas3:arm64 (3.12.1-2) ...
248s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
248s Setting up libzzip-0-13t64:arm64 (0.13.78+dfsg.1-0.1) ...
248s Setting up libteckit0:arm64 (2.5.12+ds1-1) ...
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248s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ...
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248s Setting up libkpathsea6:arm64 (2024.20240313.70630+ds-6) ...
248s Setting up libgfortran5:arm64 (15-20250315-1ubuntu1) ...
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248s No JRE found. Skipping Java certificates setup.
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248s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
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248s Setting up libsynctex2:arm64 (2024.20240313.70630+ds-6) ...
248s Setting up libpotrace0:arm64 (1.16-2build1) ...
248s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
248s Setting up libice6:arm64 (2:1.1.1-1) ...
248s Setting up liblapack3:arm64 (3.12.1-2) ...
248s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
248s Setting up openjdk-21-jre-headless:arm64 (21.0.7~7ea-1) ...
248s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode
248s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode
248s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
248s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
248s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
248s Setting up fontconfig-config (2.15.0-2.1ubuntu1) ...
248s Setting up libcommons-parent-java (56-1) ...
248s Setting up libpaper-utils (2.2.5-0.3) ...
248s Setting up libthai0:arm64 (0.1.29-2build1) ...
248s Setting up libptexenc1:arm64 (2024.20240313.70630+ds-6) ...
248s Setting up libhdf5-310:arm64 (1.14.5+repack-3) ...
248s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ...
248s Setting up libfontconfig1:arm64 (2.15.0-2.1ubuntu1) ...
248s Setting up libsm6:arm64 (2:1.2.4-1) ...
248s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3) ...
248s Setting up fontconfig (2.15.0-2.1ubuntu1) ...
250s Regenerating fonts cache... done.
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250s Setting up libcommons-io-java (2.18.0-1) ...
250s Setting up libtk8.6:arm64 (8.6.16-1) ...
250s Setting up libpango-1.0-0:arm64 (1.56.3-1) ...
250s Setting up libcairo2:arm64 (1.18.4-1) ...
250s Setting up hdf5-tools (1.14.5+repack-3) ...
250s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ...
250s Setting up libpangoft2-1.0-0:arm64 (1.56.3-1) ...
250s Setting up libpangocairo-1.0-0:arm64 (1.56.3-1) ...
250s Setting up libxmu6:arm64 (2:1.1.3-3build2) ...
250s Setting up libxaw7:arm64 (2:1.0.16-1) ...
250s Setting up r-base-core (4.4.3-1) ...
251s Creating config file /etc/R/Renviron with new version
251s Setting up r-cran-labeling (0.4.3-1) ...
251s Setting up r-cran-lattice (0.22-6-1) ...
251s Setting up r-cran-nlme (3.1.167-1) ...
251s Setting up r-cran-farver (2.1.2-1) ...
251s Setting up r-cran-viridislite (0.4.2-2) ...
251s Setting up texlive-binaries (2024.20240313.70630+ds-6) ...
251s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
251s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
251s Setting up r-cran-r6 (2.6.1-1) ...
251s Setting up r-cran-pkgkitten (0.2.4-1) ...
251s Setting up texlive-base (2024.20250309-1) ...
251s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
252s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
252s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
252s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
253s Setting up r-cran-magrittr (2.0.3-1) ...
253s Setting up r-cran-littler (0.3.20-2) ...
253s Setting up r-cran-rcpp (1.0.14-1) ...
253s Setting up r-cran-rlang (1.1.5-1) ...
253s Setting up littler (0.3.20-2) ...
253s Setting up r-cran-withr (3.0.2+dfsg-1) ...
253s Setting up r-cran-fansi (1.0.6-1ubuntu1) ...
253s Setting up r-cran-mass (7.3-64-1) ...
253s Setting up r-cran-glue (1.8.0-1) ...
253s Setting up r-cran-cli (3.6.4-1) ...
253s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
253s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
253s Setting up r-cran-utf8 (1.2.4-1) ...
253s Setting up r-cran-colorspace (2.1-1+dfsg-1) ...
253s Setting up texlive-latex-base (2024.20250309-1) ...
253s Setting up r-cran-plyr (1.8.9-1) ...
253s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
253s Setting up r-cran-isoband (0.2.7-1) ...
253s Setting up r-cran-gtable (0.3.6+dfsg-1) ...
253s Setting up r-cran-matrix (1.7-3-1) ...
253s Setting up r-cran-mgcv (1.9-1-1) ...
253s Setting up r-cran-vctrs (0.6.5-1) ...
253s Setting up r-cran-pillar (1.10.1+dfsg-1) ...
253s Setting up r-cran-reshape (0.8.9-1) ...
253s Setting up r-cran-munsell (0.5.1-1) ...
253s Setting up r-cran-tibble (3.2.1+dfsg-3) ...
253s Setting up r-cran-gridextra (2.3-3build1) ...
253s Setting up r-cran-scales (1.3.0-1) ...
253s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ...
253s Processing triggers for libc-bin (2.41-1ubuntu2) ...
253s Processing triggers for man-db (2.13.0-1) ...
254s Processing triggers for install-info (7.1.1-1) ...
254s Processing triggers for ca-certificates-java (20240118) ...
255s Adding debian:ACCVRAIZ1.pem
255s Adding debian:AC_RAIZ_FNMT-RCM.pem
255s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem
255s Adding debian:ANF_Secure_Server_Root_CA.pem
255s Adding debian:Actalis_Authentication_Root_CA.pem
255s Adding debian:AffirmTrust_Commercial.pem
255s Adding debian:AffirmTrust_Networking.pem
255s Adding debian:AffirmTrust_Premium.pem
255s Adding debian:AffirmTrust_Premium_ECC.pem
255s Adding debian:Amazon_Root_CA_1.pem
255s Adding debian:Amazon_Root_CA_2.pem
255s Adding debian:Amazon_Root_CA_3.pem
255s Adding debian:Amazon_Root_CA_4.pem
255s Adding debian:Atos_TrustedRoot_2011.pem
255s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem
255s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem
255s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
255s Adding debian:BJCA_Global_Root_CA1.pem
255s Adding debian:BJCA_Global_Root_CA2.pem
255s Adding debian:Baltimore_CyberTrust_Root.pem
255s Adding debian:Buypass_Class_2_Root_CA.pem
255s Adding debian:Buypass_Class_3_Root_CA.pem
255s Adding debian:CA_Disig_Root_R2.pem
255s Adding debian:CFCA_EV_ROOT.pem
255s Adding debian:COMODO_Certification_Authority.pem
255s Adding debian:COMODO_ECC_Certification_Authority.pem
255s Adding debian:COMODO_RSA_Certification_Authority.pem
255s Adding debian:Certainly_Root_E1.pem
255s Adding debian:Certainly_Root_R1.pem
255s Adding debian:Certigna.pem
255s Adding debian:Certigna_Root_CA.pem
255s Adding debian:Certum_EC-384_CA.pem
255s Adding debian:Certum_Trusted_Network_CA.pem
255s Adding debian:Certum_Trusted_Network_CA_2.pem
255s Adding debian:Certum_Trusted_Root_CA.pem
255s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem
255s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem
255s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem
255s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem
255s Adding debian:Comodo_AAA_Services_root.pem
255s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem
255s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem
255s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
255s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
255s Adding debian:DigiCert_Assured_ID_Root_CA.pem
255s Adding debian:DigiCert_Assured_ID_Root_G2.pem
255s Adding debian:DigiCert_Assured_ID_Root_G3.pem
255s Adding debian:DigiCert_Global_Root_CA.pem
255s Adding debian:DigiCert_Global_Root_G2.pem
255s Adding debian:DigiCert_Global_Root_G3.pem
255s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
255s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem
255s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem
255s Adding debian:DigiCert_Trusted_Root_G4.pem
255s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
255s Adding debian:Entrust_Root_Certification_Authority.pem
255s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
255s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
255s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem
255s Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem
255s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem
255s Adding debian:GLOBALTRUST_2020.pem
255s Adding debian:GTS_Root_R1.pem
255s Adding debian:GTS_Root_R2.pem
256s Adding debian:GTS_Root_R3.pem
256s Adding debian:GTS_Root_R4.pem
256s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
256s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
256s Adding debian:GlobalSign_Root_CA.pem
256s Adding debian:GlobalSign_Root_CA_-_R3.pem
256s Adding debian:GlobalSign_Root_CA_-_R6.pem
256s Adding debian:GlobalSign_Root_E46.pem
256s Adding debian:GlobalSign_Root_R46.pem
256s Adding debian:Go_Daddy_Class_2_CA.pem
256s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
256s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem
256s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem
256s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
256s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
256s Adding debian:HiPKI_Root_CA_-_G1.pem
256s Adding debian:Hongkong_Post_Root_CA_3.pem
256s Adding debian:ISRG_Root_X1.pem
256s Adding debian:ISRG_Root_X2.pem
256s Adding debian:IdenTrust_Commercial_Root_CA_1.pem
256s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
256s Adding debian:Izenpe.com.pem
256s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
256s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem
256s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem
256s Adding debian:NAVER_Global_Root_Certification_Authority.pem
256s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
256s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
256s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem
256s Adding debian:QuoVadis_Root_CA_1_G3.pem
256s Adding debian:QuoVadis_Root_CA_2.pem
256s Adding debian:QuoVadis_Root_CA_2_G3.pem
256s Adding debian:QuoVadis_Root_CA_3.pem
256s Adding debian:QuoVadis_Root_CA_3_G3.pem
256s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem
256s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem
256s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem
256s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem
256s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem
256s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem
256s Adding debian:SZAFIR_ROOT_CA2.pem
256s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem
256s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem
256s Adding debian:SecureSign_RootCA11.pem
256s Adding debian:SecureSign_Root_CA12.pem
256s Adding debian:SecureSign_Root_CA14.pem
256s Adding debian:SecureSign_Root_CA15.pem
256s Adding debian:SecureTrust_CA.pem
256s Adding debian:Secure_Global_CA.pem
256s Adding debian:Security_Communication_ECC_RootCA1.pem
256s Adding debian:Security_Communication_RootCA2.pem
256s Adding debian:Security_Communication_RootCA3.pem
256s Adding debian:Starfield_Class_2_CA.pem
256s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
256s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
256s Adding debian:SwissSign_Gold_CA_-_G2.pem
256s Adding debian:SwissSign_Silver_CA_-_G2.pem
256s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
256s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
256s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
256s Adding debian:TWCA_CYBER_Root_CA.pem
256s Adding debian:TWCA_Global_Root_CA.pem
256s Adding debian:TWCA_Root_Certification_Authority.pem
256s Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem
256s Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem
256s Adding debian:TeliaSonera_Root_CA_v1.pem
256s Adding debian:Telia_Root_CA_v2.pem
256s Adding debian:TrustAsia_Global_Root_CA_G3.pem
256s Adding debian:TrustAsia_Global_Root_CA_G4.pem
256s Adding debian:Trustwave_Global_Certification_Authority.pem
256s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem
256s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem
256s Adding debian:TunTrust_Root_CA.pem
256s Adding debian:UCA_Extended_Validation_Root.pem
256s Adding debian:UCA_Global_G2_Root.pem
256s Adding debian:USERTrust_ECC_Certification_Authority.pem
256s Adding debian:USERTrust_RSA_Certification_Authority.pem
256s Adding debian:XRamp_Global_CA_Root.pem
256s Adding debian:certSIGN_ROOT_CA.pem
256s Adding debian:certSIGN_Root_CA_G2.pem
256s Adding debian:e-Szigno_Root_CA_2017.pem
256s Adding debian:ePKI_Root_Certification_Authority.pem
256s Adding debian:emSign_ECC_Root_CA_-_C3.pem
256s Adding debian:emSign_ECC_Root_CA_-_G3.pem
256s Adding debian:emSign_Root_CA_-_C1.pem
256s Adding debian:emSign_Root_CA_-_G1.pem
256s Adding debian:vTrus_ECC_Root_CA.pem
256s Adding debian:vTrus_Root_CA.pem
256s done.
256s Setting up default-jre-headless (2:1.21-76) ...
256s Setting up nanook (1.33+dfsg-6) ...
256s Processing triggers for tex-common (6.19) ...
256s Running updmap-sys. This may take some time... done.
256s Running mktexlsr /var/lib/texmf ... done.
256s Building format(s) --all.
294s 	This may take some time... done.
296s autopkgtest [13:11:09]: test run-unit-test: [-----------------------
307s 
307s NanoOK v1.33
307s 
307s Comments/bugs to: richard.leggett@earlham.ac.uk
307s Follow NanoOK on twitter: @NanoOK_Software
307s 
307s Scripts dir: /usr/share/nanook/bin
307s 
307s Checking dependencies
307s *** ERROR: Couldn't find Rscript - is R installed? ***
307s pdfTeX 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian)
307s h5dump: Version 1.14.5
307s 
307s Making directory /tmp/autopkgtest.RZrHAT/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/fasta
308s Checking FAST5 directory structure...
308s   Using pass/fail dirs: yes
308s       Using batch dirs: no
308s         Using barcodes: no
308s 
311s 
Processing [                                                  ] 0/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
311s 
311s DONE
311s 
311s NanoOK v1.33
311s 
311s Comments/bugs to: richard.leggett@earlham.ac.uk
311s Follow NanoOK on twitter: @NanoOK_Software
311s 
311s Scripts dir: /usr/share/nanook/bin
311s 
311s Checking dependencies
311s *** ERROR: Couldn't find Rscript - is R installed? ***
311s pdfTeX 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian)
311s h5dump: Version 1.14.5
311s 
311s Making directory /tmp/autopkgtest.RZrHAT/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/last
311s Making directory /tmp/autopkgtest.RZrHAT/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/logs/last
311s Checking FASTA/Q directory structure...
311s   Using pass/fail dirs: yes
311s       Using batch dirs: no
311s         Using barcodes: no
311s 
314s 
Processing [                                                  ] 1/3
Processing [==================================================] 3/3
Processing [==================================================] 3/3
Processing [==================================================] 3/3
Processing [==================================================] 3/3
Processing [==================================================] 3/3
Processing [==================================================] 3/3
314s 
314s DONE
314s 
314s NanoOK v1.33
314s 
314s Comments/bugs to: richard.leggett@earlham.ac.uk
314s Follow NanoOK on twitter: @NanoOK_Software
314s 
314s Scripts dir: /usr/share/nanook/bin
314s 
314s Checking dependencies
314s *** ERROR: Couldn't find Rscript - is R installed? ***
314s pdfTeX 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian)
314s h5dump: Version 1.14.5
314s 
314s Checking FASTA/Q directory structure...
314s   Using pass/fail dirs: yes
314s       Using batch dirs: no
314s         Using barcodes: no
314s 
314s Using .sizes file ecoli_dh10b_cs.fasta.sizes
314s Note: if you have changed the reference file, you need to delete the .sizes file and re-run.
314s 
314s Reading reference sizes and making directories
314s 	Escherichia_coli	4686137
314s 	Control_sequence	3560
314s 
314s Calculating reference GC
314s 	Escherichia_coli
315s 	Control_sequence
315s 
315s Parsing Template
315s 
[                                                  ] 0/1
[==================================================] 1/1
315s 
315s Error: unable to find any Template alignments to process.
315s Common reasons for this:
315s 1. Failure to index the reference with the alignment tool, resulting in alignment files of 0 bytes
315s 2. Wrong reference specified to the align stage, resulting in no alignments
315s 3. When indexing with LAST, the output prefix needs to be the same as the reference FASTA file, minus the .fasta extension
315s    e.g. lastdb -Q 0 referencename referencename.fasta
315s 
315s autopkgtest [13:11:28]: test run-unit-test: -----------------------]
316s autopkgtest [13:11:29]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
316s run-unit-test        FAIL non-zero exit status 1
316s autopkgtest [13:11:29]: @@@@@@@@@@@@@@@@@@@@ summary
316s run-unit-test        FAIL non-zero exit status 1
321s nova [W] Using flock in prodstack6-arm64
321s flock: timeout while waiting to get lock
321s Creating nova instance adt-plucky-arm64-nanook-20250322-130613-juju-7f2275-prod-proposed-migration-environment-2-ebefab47-ba13-41df-9c79-44b5e60ade27 from image adt/ubuntu-plucky-arm64-server-20250321.img (UUID b4313911-f3e3-46a3-9c15-4e718cedb875)...
321s nova [W] Timed out waiting for 4282e099-d4be-47b2-9183-aee3e42d165f to get deleted.