0s autopkgtest [12:21:10]: starting date and time: 2025-02-19 12:21:10+0000
  0s autopkgtest [12:21:10]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [12:21:10]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.n0muu8ss/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:last-align --apt-upgrade nanook --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=last-align/1609-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-26.secgroup --name adt-plucky-arm64-nanook-20250219-114601-juju-7f2275-prod-proposed-migration-environment-2-7592d4ee-24cd-4840-8312-80fb99a1604e --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
237s autopkgtest [12:25:07]: testbed dpkg architecture: arm64
237s autopkgtest [12:25:07]: testbed apt version: 2.9.29
237s autopkgtest [12:25:07]: @@@@@@@@@@@@@@@@@@@@ test bed setup
237s autopkgtest [12:25:07]: testbed release detected to be: None
238s autopkgtest [12:25:08]: updating testbed package index (apt update)
239s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB]
239s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
239s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
239s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
239s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [750 kB]
239s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.1 kB]
239s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B]
239s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.9 kB]
239s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [93.3 kB]
239s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [7960 B]
239s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [686 kB]
239s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [11.2 kB]
240s Fetched 1752 kB in 1s (1854 kB/s)
240s Reading package lists...
241s Reading package lists...
242s Building dependency tree...
242s Reading state information...
242s Calculating upgrade...
243s The following NEW packages will be installed:
243s   libapt-pkg7.0
243s The following packages will be upgraded:
243s   apt apt-utils iproute2 liblsof0 libp11-kit0 lsof rsyslog
243s 7 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
243s Need to get 4842 kB of archives.
243s After this operation, 3409 kB of additional disk space will be used.
243s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libapt-pkg7.0 arm64 2.9.30 [1023 kB]
244s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 apt arm64 2.9.30 [1364 kB]
244s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 apt-utils arm64 2.9.30 [207 kB]
245s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 iproute2 arm64 6.13.0-1ubuntu1 [1158 kB]
245s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libp11-kit0 arm64 0.25.5-2ubuntu3 [280 kB]
245s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 rsyslog arm64 8.2412.0-2ubuntu1 [521 kB]
245s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 lsof arm64 4.99.4+dfsg-1 [236 kB]
245s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsof0 arm64 4.99.4+dfsg-1 [53.9 kB]
246s Preconfiguring packages ...
246s Fetched 4842 kB in 2s (2033 kB/s)
246s Selecting previously unselected package libapt-pkg7.0:arm64.
246s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 116620 files and directories currently installed.)
246s Preparing to unpack .../libapt-pkg7.0_2.9.30_arm64.deb ...
246s Unpacking libapt-pkg7.0:arm64 (2.9.30) ...
246s Setting up libapt-pkg7.0:arm64 (2.9.30) ...
247s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 116669 files and directories currently installed.)
247s Preparing to unpack .../archives/apt_2.9.30_arm64.deb ...
247s Unpacking apt (2.9.30) over (2.9.29) ...
247s Setting up apt (2.9.30) ...
248s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 116669 files and directories currently installed.)
248s Preparing to unpack .../0-apt-utils_2.9.30_arm64.deb ...
248s Unpacking apt-utils (2.9.30) over (2.9.29) ...
248s Preparing to unpack .../1-iproute2_6.13.0-1ubuntu1_arm64.deb ...
248s Unpacking iproute2 (6.13.0-1ubuntu1) over (6.10.0-2ubuntu1) ...
248s Preparing to unpack .../2-libp11-kit0_0.25.5-2ubuntu3_arm64.deb ...
248s Unpacking libp11-kit0:arm64 (0.25.5-2ubuntu3) over (0.25.5-2ubuntu2) ...
248s Preparing to unpack .../3-rsyslog_8.2412.0-2ubuntu1_arm64.deb ...
248s Unpacking rsyslog (8.2412.0-2ubuntu1) over (8.2412.0-1ubuntu1) ...
248s Preparing to unpack .../4-lsof_4.99.4+dfsg-1_arm64.deb ...
248s Unpacking lsof (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ...
248s Preparing to unpack .../5-liblsof0_4.99.4+dfsg-1_arm64.deb ...
248s Unpacking liblsof0 (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ...
248s Setting up apt-utils (2.9.30) ...
248s Setting up liblsof0 (4.99.4+dfsg-1) ...
248s Setting up iproute2 (6.13.0-1ubuntu1) ...
249s Setting up rsyslog (8.2412.0-2ubuntu1) ...
249s info: The user `syslog' is already a member of `adm'.
250s Setting up libp11-kit0:arm64 (0.25.5-2ubuntu3) ...
250s Setting up lsof (4.99.4+dfsg-1) ...
250s Processing triggers for man-db (2.13.0-1) ...
252s Processing triggers for libc-bin (2.40-4ubuntu1) ...
254s Reading package lists...
254s Building dependency tree...
254s Reading state information...
255s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
255s autopkgtest [12:25:25]: upgrading testbed (apt dist-upgrade and autopurge)
255s Reading package lists...
255s Building dependency tree...
255s Reading state information...
256s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
256s Starting 2 pkgProblemResolver with broken count: 0
256s Done
257s Entering ResolveByKeep
257s 
258s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
258s Reading package lists...
258s Building dependency tree...
258s Reading state information...
259s Starting pkgProblemResolver with broken count: 0
259s Starting 2 pkgProblemResolver with broken count: 0
259s Done
260s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
260s autopkgtest [12:25:30]: rebooting testbed after setup commands that affected boot
285s autopkgtest [12:25:55]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Tue Feb  4 15:49:33 UTC 2025
288s autopkgtest [12:25:58]: @@@@@@@@@@@@@@@@@@@@ apt-source nanook
295s Get:1 http://ftpmaster.internal/ubuntu plucky/universe nanook 1.33+dfsg-6 (dsc) [2220 B]
295s Get:2 http://ftpmaster.internal/ubuntu plucky/universe nanook 1.33+dfsg-6 (tar) [95.2 kB]
295s Get:3 http://ftpmaster.internal/ubuntu plucky/universe nanook 1.33+dfsg-6 (diff) [1818 kB]
295s gpgv: Signature made Wed Dec 18 14:21:48 2024 UTC
295s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
295s gpgv:                issuer "emollier@debian.org"
295s gpgv: Can't check signature: No public key
295s dpkg-source: warning: cannot verify inline signature for ./nanook_1.33+dfsg-6.dsc: no acceptable signature found
295s autopkgtest [12:26:05]: testing package nanook version 1.33+dfsg-6
296s autopkgtest [12:26:06]: build not needed
296s autopkgtest [12:26:06]: test run-unit-test: preparing testbed
297s Reading package lists...
297s Building dependency tree...
297s Reading state information...
298s Starting pkgProblemResolver with broken count: 0
298s Starting 2 pkgProblemResolver with broken count: 0
298s Done
299s The following NEW packages will be installed:
299s   ca-certificates-java default-jre-headless fontconfig fontconfig-config
299s   fonts-dejavu-core fonts-dejavu-mono fonts-lmodern hdf5-tools java-common
299s   last-align libaec0 libapache-pom-java libblas3 libcairo2 libcommons-io-java
299s   libcommons-parent-java libdatrie1 libdeflate0 libfontconfig1 libgfortran5
299s   libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-310 libhdf5-hl-310 libice6
299s   libjbig0 libjpeg-turbo8 libjpeg8 libkpathsea6 liblapack3 liblcms2-2 liblerc4
299s   libmpfi0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
299s   libpaper2 libpcsclite1 libpixman-1-0 libpotrace0 libptexenc1 libsharpyuv0
299s   libsm6 libsynctex2 libsz2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data
299s   libthai0 libtiff6 libtk8.6 libwebp7 libxaw7 libxcb-render0 libxcb-shm0
299s   libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64
299s   littler nanook nanook-examples openjdk-21-jre-headless r-base-core
299s   r-cran-cli r-cran-colorspace r-cran-fansi r-cran-farver r-cran-ggplot2
299s   r-cran-glue r-cran-gridextra r-cran-gtable r-cran-isoband r-cran-labeling
299s   r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass
299s   r-cran-matrix r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar
299s   r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-r6 r-cran-rcolorbrewer
299s   r-cran-rcpp r-cran-reshape r-cran-rlang r-cran-scales r-cran-tibble
299s   r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr t1utils tex-common
299s   texlive-base texlive-binaries texlive-latex-base unzip x11-common xdg-utils
299s   zip
299s 0 upgraded, 114 newly installed, 0 to remove and 0 not upgraded.
299s Need to get 161 MB of archives.
299s After this operation, 470 MB of additional disk space will be used.
299s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 ca-certificates-java all 20240118 [11.6 kB]
299s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 java-common all 0.76 [6852 B]
299s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB]
299s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB]
299s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
299s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcsclite1 arm64 2.3.1-1 [25.0 kB]
299s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 openjdk-21-jre-headless arm64 21.0.6+7-1 [45.7 MB]
305s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 default-jre-headless arm64 2:1.21-76 [3176 B]
305s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
305s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
305s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB]
305s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB]
305s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB]
305s Get:14 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lmodern all 2.005-1 [4799 kB]
305s Get:15 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB]
305s Get:16 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B]
305s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-310 arm64 1.14.5+repack-3 [1331 kB]
305s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [59.8 kB]
305s Get:19 http://ftpmaster.internal/ubuntu plucky/universe arm64 hdf5-tools arm64 1.14.5+repack-3 [366 kB]
305s Get:20 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 last-align arm64 1609-1 [842 kB]
306s Get:21 http://ftpmaster.internal/ubuntu plucky/universe arm64 libapache-pom-java all 33-2 [5874 B]
306s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB]
306s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB]
306s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB]
306s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B]
306s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB]
306s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB]
306s Get:28 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcommons-parent-java all 56-1 [10.7 kB]
306s Get:29 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcommons-io-java all 2.18.0-1 [477 kB]
306s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB]
306s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB]
306s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250213-1ubuntu1 [443 kB]
306s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250213-1ubuntu1 [146 kB]
306s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB]
306s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB]
306s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
306s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB]
306s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libkpathsea6 arm64 2024.20240313.70630+ds-5build2 [64.3 kB]
306s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB]
306s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB]
306s Get:41 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmpfi0 arm64 1.5.4+ds-4 [35.3 kB]
306s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB]
306s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB]
306s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.1-1 [238 kB]
306s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.1-1 [49.6 kB]
306s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.1-1 [27.6 kB]
306s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB]
306s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB]
306s Get:49 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpotrace0 arm64 1.16-2build1 [16.0 kB]
306s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libptexenc1 arm64 2024.20240313.70630+ds-5build2 [41.7 kB]
306s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB]
306s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB]
306s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libsynctex2 arm64 2024.20240313.70630+ds-5build2 [60.3 kB]
306s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB]
306s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB]
306s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libtexlua53-5 arm64 2024.20240313.70630+ds-5build2 [122 kB]
306s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB]
306s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB]
306s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB]
306s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB]
306s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B]
306s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB]
306s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB]
307s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libxmu6 arm64 2:1.1.3-3build2 [47.5 kB]
307s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libxpm4 arm64 1:3.5.17-1build2 [35.1 kB]
307s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libxaw7 arm64 2:1.0.16-1 [184 kB]
307s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libxi6 arm64 2:1.8.2-1 [32.4 kB]
307s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 libzzip-0-13t64 arm64 0.13.72+dfsg.1-1.2build1 [29.2 kB]
307s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB]
307s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB]
307s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
307s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.2-1build1 [28.4 MB]
310s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB]
310s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B]
310s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.3-1 [1347 kB]
310s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB]
310s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB]
311s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
311s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB]
311s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB]
311s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mass arm64 7.3-64-1 [1110 kB]
311s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB]
312s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-nlme arm64 3.1.167-1 [2311 kB]
312s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-2-1 [4153 kB]
313s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB]
314s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-farver arm64 2.1.2-1 [1344 kB]
314s Get:87 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB]
314s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-colorspace arm64 2.1-1+dfsg-1 [1563 kB]
314s Get:89 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-munsell all 0.5.1-1 [213 kB]
314s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB]
314s Get:91 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
314s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB]
315s Get:93 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-scales all 1.3.0-1 [603 kB]
315s Get:94 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB]
315s Get:95 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB]
315s Get:96 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB]
315s Get:97 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB]
315s Get:98 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB]
315s Get:99 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
315s Get:100 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB]
315s Get:101 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
316s Get:102 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB]
317s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-gridextra all 2.3-3build1 [1024 kB]
317s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
317s Get:105 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB]
317s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB]
318s Get:107 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-reshape all 0.8.9-1 [168 kB]
318s Get:108 http://ftpmaster.internal/ubuntu plucky/universe arm64 tex-common all 6.18 [32.8 kB]
318s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 t1utils arm64 1.41-4build3 [61.0 kB]
318s Get:110 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-binaries arm64 2024.20240313.70630+ds-5build2 [8328 kB]
320s Get:111 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-base all 2024.20241115-1 [22.5 MB]
328s Get:112 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-latex-base all 2024.20241115-1 [1260 kB]
329s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 nanook all 1.33+dfsg-6 [195 kB]
329s Get:114 http://ftpmaster.internal/ubuntu plucky/universe arm64 nanook-examples all 1.33+dfsg-6 [1814 kB]
330s Preconfiguring packages ...
330s Fetched 161 MB in 31s (5218 kB/s)
330s Selecting previously unselected package ca-certificates-java.
331s (Reading database ... 
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331s Preparing to unpack .../000-ca-certificates-java_20240118_all.deb ...
331s Unpacking ca-certificates-java (20240118) ...
331s Selecting previously unselected package java-common.
331s Preparing to unpack .../001-java-common_0.76_all.deb ...
331s Unpacking java-common (0.76) ...
331s Selecting previously unselected package liblcms2-2:arm64.
331s Preparing to unpack .../002-liblcms2-2_2.16-2_arm64.deb ...
331s Unpacking liblcms2-2:arm64 (2.16-2) ...
331s Selecting previously unselected package libjpeg-turbo8:arm64.
331s Preparing to unpack .../003-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ...
331s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ...
331s Selecting previously unselected package libjpeg8:arm64.
331s Preparing to unpack .../004-libjpeg8_8c-2ubuntu11_arm64.deb ...
331s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
331s Selecting previously unselected package libpcsclite1:arm64.
331s Preparing to unpack .../005-libpcsclite1_2.3.1-1_arm64.deb ...
331s Unpacking libpcsclite1:arm64 (2.3.1-1) ...
331s Selecting previously unselected package openjdk-21-jre-headless:arm64.
331s Preparing to unpack .../006-openjdk-21-jre-headless_21.0.6+7-1_arm64.deb ...
331s Unpacking openjdk-21-jre-headless:arm64 (21.0.6+7-1) ...
332s Selecting previously unselected package default-jre-headless.
332s Preparing to unpack .../007-default-jre-headless_2%3a1.21-76_arm64.deb ...
332s Unpacking default-jre-headless (2:1.21-76) ...
332s Selecting previously unselected package fonts-dejavu-mono.
332s Preparing to unpack .../008-fonts-dejavu-mono_2.37-8_all.deb ...
332s Unpacking fonts-dejavu-mono (2.37-8) ...
332s Selecting previously unselected package fonts-dejavu-core.
332s Preparing to unpack .../009-fonts-dejavu-core_2.37-8_all.deb ...
332s Unpacking fonts-dejavu-core (2.37-8) ...
332s Selecting previously unselected package fontconfig-config.
332s Preparing to unpack .../010-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ...
333s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
333s Selecting previously unselected package libfontconfig1:arm64.
333s Preparing to unpack .../011-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ...
333s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ...
333s Selecting previously unselected package fontconfig.
333s Preparing to unpack .../012-fontconfig_2.15.0-2ubuntu1_arm64.deb ...
333s Unpacking fontconfig (2.15.0-2ubuntu1) ...
333s Selecting previously unselected package fonts-lmodern.
333s Preparing to unpack .../013-fonts-lmodern_2.005-1_all.deb ...
333s Unpacking fonts-lmodern (2.005-1) ...
333s Selecting previously unselected package libaec0:arm64.
333s Preparing to unpack .../014-libaec0_1.1.3-1_arm64.deb ...
333s Unpacking libaec0:arm64 (1.1.3-1) ...
333s Selecting previously unselected package libsz2:arm64.
333s Preparing to unpack .../015-libsz2_1.1.3-1_arm64.deb ...
333s Unpacking libsz2:arm64 (1.1.3-1) ...
333s Selecting previously unselected package libhdf5-310:arm64.
333s Preparing to unpack .../016-libhdf5-310_1.14.5+repack-3_arm64.deb ...
333s Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ...
333s Selecting previously unselected package libhdf5-hl-310:arm64.
333s Preparing to unpack .../017-libhdf5-hl-310_1.14.5+repack-3_arm64.deb ...
333s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3) ...
333s Selecting previously unselected package hdf5-tools.
333s Preparing to unpack .../018-hdf5-tools_1.14.5+repack-3_arm64.deb ...
333s Unpacking hdf5-tools (1.14.5+repack-3) ...
333s Selecting previously unselected package last-align.
333s Preparing to unpack .../019-last-align_1609-1_arm64.deb ...
333s Unpacking last-align (1609-1) ...
333s Selecting previously unselected package libapache-pom-java.
333s Preparing to unpack .../020-libapache-pom-java_33-2_all.deb ...
333s Unpacking libapache-pom-java (33-2) ...
333s Selecting previously unselected package libblas3:arm64.
333s Preparing to unpack .../021-libblas3_3.12.1-2_arm64.deb ...
333s Unpacking libblas3:arm64 (3.12.1-2) ...
333s Selecting previously unselected package libpixman-1-0:arm64.
333s Preparing to unpack .../022-libpixman-1-0_0.44.0-3_arm64.deb ...
333s Unpacking libpixman-1-0:arm64 (0.44.0-3) ...
333s Selecting previously unselected package libxcb-render0:arm64.
333s Preparing to unpack .../023-libxcb-render0_1.17.0-2_arm64.deb ...
333s Unpacking libxcb-render0:arm64 (1.17.0-2) ...
333s Selecting previously unselected package libxcb-shm0:arm64.
333s Preparing to unpack .../024-libxcb-shm0_1.17.0-2_arm64.deb ...
333s Unpacking libxcb-shm0:arm64 (1.17.0-2) ...
333s Selecting previously unselected package libxrender1:arm64.
333s Preparing to unpack .../025-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ...
333s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ...
333s Selecting previously unselected package libcairo2:arm64.
333s Preparing to unpack .../026-libcairo2_1.18.2-2_arm64.deb ...
333s Unpacking libcairo2:arm64 (1.18.2-2) ...
333s Selecting previously unselected package libcommons-parent-java.
333s Preparing to unpack .../027-libcommons-parent-java_56-1_all.deb ...
333s Unpacking libcommons-parent-java (56-1) ...
333s Selecting previously unselected package libcommons-io-java.
333s Preparing to unpack .../028-libcommons-io-java_2.18.0-1_all.deb ...
333s Unpacking libcommons-io-java (2.18.0-1) ...
333s Selecting previously unselected package libdatrie1:arm64.
334s Preparing to unpack .../029-libdatrie1_0.2.13-3build1_arm64.deb ...
334s Unpacking libdatrie1:arm64 (0.2.13-3build1) ...
334s Selecting previously unselected package libdeflate0:arm64.
334s Preparing to unpack .../030-libdeflate0_1.23-1_arm64.deb ...
334s Unpacking libdeflate0:arm64 (1.23-1) ...
334s Selecting previously unselected package libgfortran5:arm64.
334s Preparing to unpack .../031-libgfortran5_15-20250213-1ubuntu1_arm64.deb ...
334s Unpacking libgfortran5:arm64 (15-20250213-1ubuntu1) ...
334s Selecting previously unselected package libgomp1:arm64.
334s Preparing to unpack .../032-libgomp1_15-20250213-1ubuntu1_arm64.deb ...
334s Unpacking libgomp1:arm64 (15-20250213-1ubuntu1) ...
334s Selecting previously unselected package libgraphite2-3:arm64.
334s Preparing to unpack .../033-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ...
334s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
334s Selecting previously unselected package libharfbuzz0b:arm64.
334s Preparing to unpack .../034-libharfbuzz0b_10.2.0-1_arm64.deb ...
334s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ...
334s Selecting previously unselected package x11-common.
334s Preparing to unpack .../035-x11-common_1%3a7.7+23ubuntu3_all.deb ...
334s Unpacking x11-common (1:7.7+23ubuntu3) ...
334s Selecting previously unselected package libice6:arm64.
334s Preparing to unpack .../036-libice6_2%3a1.1.1-1_arm64.deb ...
334s Unpacking libice6:arm64 (2:1.1.1-1) ...
334s Selecting previously unselected package libkpathsea6:arm64.
334s Preparing to unpack .../037-libkpathsea6_2024.20240313.70630+ds-5build2_arm64.deb ...
334s Unpacking libkpathsea6:arm64 (2024.20240313.70630+ds-5build2) ...
334s Selecting previously unselected package liblapack3:arm64.
334s Preparing to unpack .../038-liblapack3_3.12.1-2_arm64.deb ...
334s Unpacking liblapack3:arm64 (3.12.1-2) ...
334s Selecting previously unselected package liblerc4:arm64.
334s Preparing to unpack .../039-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ...
334s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
334s Selecting previously unselected package libmpfi0:arm64.
334s Preparing to unpack .../040-libmpfi0_1.5.4+ds-4_arm64.deb ...
334s Unpacking libmpfi0:arm64 (1.5.4+ds-4) ...
334s Selecting previously unselected package libthai-data.
334s Preparing to unpack .../041-libthai-data_0.1.29-2build1_all.deb ...
334s Unpacking libthai-data (0.1.29-2build1) ...
334s Selecting previously unselected package libthai0:arm64.
334s Preparing to unpack .../042-libthai0_0.1.29-2build1_arm64.deb ...
334s Unpacking libthai0:arm64 (0.1.29-2build1) ...
334s Selecting previously unselected package libpango-1.0-0:arm64.
334s Preparing to unpack .../043-libpango-1.0-0_1.56.1-1_arm64.deb ...
334s Unpacking libpango-1.0-0:arm64 (1.56.1-1) ...
335s Selecting previously unselected package libpangoft2-1.0-0:arm64.
335s Preparing to unpack .../044-libpangoft2-1.0-0_1.56.1-1_arm64.deb ...
335s Unpacking libpangoft2-1.0-0:arm64 (1.56.1-1) ...
335s Selecting previously unselected package libpangocairo-1.0-0:arm64.
335s Preparing to unpack .../045-libpangocairo-1.0-0_1.56.1-1_arm64.deb ...
335s Unpacking libpangocairo-1.0-0:arm64 (1.56.1-1) ...
335s Selecting previously unselected package libpaper2:arm64.
335s Preparing to unpack .../046-libpaper2_2.2.5-0.3_arm64.deb ...
335s Unpacking libpaper2:arm64 (2.2.5-0.3) ...
335s Selecting previously unselected package libpaper-utils.
335s Preparing to unpack .../047-libpaper-utils_2.2.5-0.3_arm64.deb ...
335s Unpacking libpaper-utils (2.2.5-0.3) ...
335s Selecting previously unselected package libpotrace0:arm64.
335s Preparing to unpack .../048-libpotrace0_1.16-2build1_arm64.deb ...
335s Unpacking libpotrace0:arm64 (1.16-2build1) ...
335s Selecting previously unselected package libptexenc1:arm64.
335s Preparing to unpack .../049-libptexenc1_2024.20240313.70630+ds-5build2_arm64.deb ...
335s Unpacking libptexenc1:arm64 (2024.20240313.70630+ds-5build2) ...
335s Selecting previously unselected package libsharpyuv0:arm64.
335s Preparing to unpack .../050-libsharpyuv0_1.5.0-0.1_arm64.deb ...
335s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ...
335s Selecting previously unselected package libsm6:arm64.
335s Preparing to unpack .../051-libsm6_2%3a1.2.4-1_arm64.deb ...
335s Unpacking libsm6:arm64 (2:1.2.4-1) ...
335s Selecting previously unselected package libsynctex2:arm64.
335s Preparing to unpack .../052-libsynctex2_2024.20240313.70630+ds-5build2_arm64.deb ...
335s Unpacking libsynctex2:arm64 (2024.20240313.70630+ds-5build2) ...
335s Selecting previously unselected package libtcl8.6:arm64.
335s Preparing to unpack .../053-libtcl8.6_8.6.16+dfsg-1_arm64.deb ...
335s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ...
335s Selecting previously unselected package libteckit0:arm64.
335s Preparing to unpack .../054-libteckit0_2.5.12+ds1-1_arm64.deb ...
335s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ...
335s Selecting previously unselected package libtexlua53-5:arm64.
335s Preparing to unpack .../055-libtexlua53-5_2024.20240313.70630+ds-5build2_arm64.deb ...
335s Unpacking libtexlua53-5:arm64 (2024.20240313.70630+ds-5build2) ...
335s Selecting previously unselected package libjbig0:arm64.
335s Preparing to unpack .../056-libjbig0_2.1-6.1ubuntu2_arm64.deb ...
335s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ...
335s Selecting previously unselected package libwebp7:arm64.
335s Preparing to unpack .../057-libwebp7_1.5.0-0.1_arm64.deb ...
335s Unpacking libwebp7:arm64 (1.5.0-0.1) ...
335s Selecting previously unselected package libtiff6:arm64.
335s Preparing to unpack .../058-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ...
335s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ...
335s Selecting previously unselected package libxft2:arm64.
335s Preparing to unpack .../059-libxft2_2.3.6-1build1_arm64.deb ...
335s Unpacking libxft2:arm64 (2.3.6-1build1) ...
335s Selecting previously unselected package libxss1:arm64.
335s Preparing to unpack .../060-libxss1_1%3a1.2.3-1build3_arm64.deb ...
335s Unpacking libxss1:arm64 (1:1.2.3-1build3) ...
335s Selecting previously unselected package libtk8.6:arm64.
335s Preparing to unpack .../061-libtk8.6_8.6.16-1_arm64.deb ...
335s Unpacking libtk8.6:arm64 (8.6.16-1) ...
335s Selecting previously unselected package libxt6t64:arm64.
335s Preparing to unpack .../062-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ...
335s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ...
335s Selecting previously unselected package libxmu6:arm64.
335s Preparing to unpack .../063-libxmu6_2%3a1.1.3-3build2_arm64.deb ...
335s Unpacking libxmu6:arm64 (2:1.1.3-3build2) ...
335s Selecting previously unselected package libxpm4:arm64.
335s Preparing to unpack .../064-libxpm4_1%3a3.5.17-1build2_arm64.deb ...
335s Unpacking libxpm4:arm64 (1:3.5.17-1build2) ...
335s Selecting previously unselected package libxaw7:arm64.
335s Preparing to unpack .../065-libxaw7_2%3a1.0.16-1_arm64.deb ...
335s Unpacking libxaw7:arm64 (2:1.0.16-1) ...
336s Selecting previously unselected package libxi6:arm64.
336s Preparing to unpack .../066-libxi6_2%3a1.8.2-1_arm64.deb ...
336s Unpacking libxi6:arm64 (2:1.8.2-1) ...
336s Selecting previously unselected package libzzip-0-13t64:arm64.
336s Preparing to unpack .../067-libzzip-0-13t64_0.13.72+dfsg.1-1.2build1_arm64.deb ...
336s Unpacking libzzip-0-13t64:arm64 (0.13.72+dfsg.1-1.2build1) ...
336s Selecting previously unselected package zip.
336s Preparing to unpack .../068-zip_3.0-14ubuntu2_arm64.deb ...
336s Unpacking zip (3.0-14ubuntu2) ...
336s Selecting previously unselected package unzip.
336s Preparing to unpack .../069-unzip_6.0-28ubuntu6_arm64.deb ...
336s Unpacking unzip (6.0-28ubuntu6) ...
336s Selecting previously unselected package xdg-utils.
336s Preparing to unpack .../070-xdg-utils_1.2.1-2ubuntu1_all.deb ...
336s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
336s Selecting previously unselected package r-base-core.
336s Preparing to unpack .../071-r-base-core_4.4.2-1build1_arm64.deb ...
336s Unpacking r-base-core (4.4.2-1build1) ...
336s Selecting previously unselected package r-cran-littler.
336s Preparing to unpack .../072-r-cran-littler_0.3.20-2_arm64.deb ...
336s Unpacking r-cran-littler (0.3.20-2) ...
336s Selecting previously unselected package littler.
336s Preparing to unpack .../073-littler_0.3.20-2_all.deb ...
336s Unpacking littler (0.3.20-2) ...
336s Selecting previously unselected package r-cran-cli.
336s Preparing to unpack .../074-r-cran-cli_3.6.3-1_arm64.deb ...
336s Unpacking r-cran-cli (3.6.3-1) ...
336s Selecting previously unselected package r-cran-glue.
336s Preparing to unpack .../075-r-cran-glue_1.8.0-1_arm64.deb ...
336s Unpacking r-cran-glue (1.8.0-1) ...
336s Selecting previously unselected package r-cran-rlang.
336s Preparing to unpack .../076-r-cran-rlang_1.1.5-1_arm64.deb ...
336s Unpacking r-cran-rlang (1.1.5-1) ...
337s Selecting previously unselected package r-cran-lifecycle.
337s Preparing to unpack .../077-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
337s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
337s Selecting previously unselected package r-cran-gtable.
337s Preparing to unpack .../078-r-cran-gtable_0.3.6+dfsg-1_all.deb ...
337s Unpacking r-cran-gtable (0.3.6+dfsg-1) ...
337s Selecting previously unselected package r-cran-isoband.
337s Preparing to unpack .../079-r-cran-isoband_0.2.7-1_arm64.deb ...
337s Unpacking r-cran-isoband (0.2.7-1) ...
337s Selecting previously unselected package r-cran-mass.
337s Preparing to unpack .../080-r-cran-mass_7.3-64-1_arm64.deb ...
337s Unpacking r-cran-mass (7.3-64-1) ...
337s Selecting previously unselected package r-cran-lattice.
337s Preparing to unpack .../081-r-cran-lattice_0.22-6-1_arm64.deb ...
337s Unpacking r-cran-lattice (0.22-6-1) ...
337s Selecting previously unselected package r-cran-nlme.
337s Preparing to unpack .../082-r-cran-nlme_3.1.167-1_arm64.deb ...
337s Unpacking r-cran-nlme (3.1.167-1) ...
337s Selecting previously unselected package r-cran-matrix.
337s Preparing to unpack .../083-r-cran-matrix_1.7-2-1_arm64.deb ...
337s Unpacking r-cran-matrix (1.7-2-1) ...
337s Selecting previously unselected package r-cran-mgcv.
337s Preparing to unpack .../084-r-cran-mgcv_1.9-1-1_arm64.deb ...
337s Unpacking r-cran-mgcv (1.9-1-1) ...
337s Selecting previously unselected package r-cran-farver.
337s Preparing to unpack .../085-r-cran-farver_2.1.2-1_arm64.deb ...
337s Unpacking r-cran-farver (2.1.2-1) ...
337s Selecting previously unselected package r-cran-labeling.
337s Preparing to unpack .../086-r-cran-labeling_0.4.3-1_all.deb ...
337s Unpacking r-cran-labeling (0.4.3-1) ...
337s Selecting previously unselected package r-cran-colorspace.
337s Preparing to unpack .../087-r-cran-colorspace_2.1-1+dfsg-1_arm64.deb ...
337s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ...
337s Selecting previously unselected package r-cran-munsell.
337s Preparing to unpack .../088-r-cran-munsell_0.5.1-1_all.deb ...
337s Unpacking r-cran-munsell (0.5.1-1) ...
337s Selecting previously unselected package r-cran-r6.
337s Preparing to unpack .../089-r-cran-r6_2.5.1-1_all.deb ...
337s Unpacking r-cran-r6 (2.5.1-1) ...
337s Selecting previously unselected package r-cran-rcolorbrewer.
337s Preparing to unpack .../090-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ...
337s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ...
338s Selecting previously unselected package r-cran-viridislite.
338s Preparing to unpack .../091-r-cran-viridislite_0.4.2-2_all.deb ...
338s Unpacking r-cran-viridislite (0.4.2-2) ...
338s Selecting previously unselected package r-cran-scales.
338s Preparing to unpack .../092-r-cran-scales_1.3.0-1_all.deb ...
338s Unpacking r-cran-scales (1.3.0-1) ...
338s Selecting previously unselected package r-cran-fansi.
338s Preparing to unpack .../093-r-cran-fansi_1.0.5-1_arm64.deb ...
338s Unpacking r-cran-fansi (1.0.5-1) ...
338s Selecting previously unselected package r-cran-magrittr.
338s Preparing to unpack .../094-r-cran-magrittr_2.0.3-1_arm64.deb ...
338s Unpacking r-cran-magrittr (2.0.3-1) ...
338s Selecting previously unselected package r-cran-utf8.
338s Preparing to unpack .../095-r-cran-utf8_1.2.4-1_arm64.deb ...
338s Unpacking r-cran-utf8 (1.2.4-1) ...
338s Selecting previously unselected package r-cran-vctrs.
338s Preparing to unpack .../096-r-cran-vctrs_0.6.5-1_arm64.deb ...
338s Unpacking r-cran-vctrs (0.6.5-1) ...
338s Selecting previously unselected package r-cran-pillar.
338s Preparing to unpack .../097-r-cran-pillar_1.10.1+dfsg-1_all.deb ...
338s Unpacking r-cran-pillar (1.10.1+dfsg-1) ...
338s Selecting previously unselected package r-cran-pkgconfig.
338s Preparing to unpack .../098-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
338s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
338s Selecting previously unselected package r-cran-tibble.
338s Preparing to unpack .../099-r-cran-tibble_3.2.1+dfsg-3_arm64.deb ...
338s Unpacking r-cran-tibble (3.2.1+dfsg-3) ...
338s Selecting previously unselected package r-cran-withr.
338s Preparing to unpack .../100-r-cran-withr_3.0.2+dfsg-1_all.deb ...
338s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
338s Selecting previously unselected package r-cran-ggplot2.
338s Preparing to unpack .../101-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ...
338s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ...
338s Selecting previously unselected package r-cran-gridextra.
338s Preparing to unpack .../102-r-cran-gridextra_2.3-3build1_all.deb ...
338s Unpacking r-cran-gridextra (2.3-3build1) ...
338s Selecting previously unselected package r-cran-pkgkitten.
338s Preparing to unpack .../103-r-cran-pkgkitten_0.2.4-1_all.deb ...
338s Unpacking r-cran-pkgkitten (0.2.4-1) ...
338s Selecting previously unselected package r-cran-rcpp.
338s Preparing to unpack .../104-r-cran-rcpp_1.0.14-1_arm64.deb ...
338s Unpacking r-cran-rcpp (1.0.14-1) ...
339s Selecting previously unselected package r-cran-plyr.
339s Preparing to unpack .../105-r-cran-plyr_1.8.9-1_arm64.deb ...
339s Unpacking r-cran-plyr (1.8.9-1) ...
339s Selecting previously unselected package r-cran-reshape.
339s Preparing to unpack .../106-r-cran-reshape_0.8.9-1_all.deb ...
339s Unpacking r-cran-reshape (0.8.9-1) ...
339s Selecting previously unselected package tex-common.
339s Preparing to unpack .../107-tex-common_6.18_all.deb ...
339s Unpacking tex-common (6.18) ...
339s Selecting previously unselected package t1utils.
339s Preparing to unpack .../108-t1utils_1.41-4build3_arm64.deb ...
339s Unpacking t1utils (1.41-4build3) ...
339s Selecting previously unselected package texlive-binaries.
339s Preparing to unpack .../109-texlive-binaries_2024.20240313.70630+ds-5build2_arm64.deb ...
339s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ...
339s Selecting previously unselected package texlive-base.
339s Preparing to unpack .../110-texlive-base_2024.20241115-1_all.deb ...
339s Unpacking texlive-base (2024.20241115-1) ...
340s Selecting previously unselected package texlive-latex-base.
340s Preparing to unpack .../111-texlive-latex-base_2024.20241115-1_all.deb ...
340s Unpacking texlive-latex-base (2024.20241115-1) ...
341s Selecting previously unselected package nanook.
341s Preparing to unpack .../112-nanook_1.33+dfsg-6_all.deb ...
341s Unpacking nanook (1.33+dfsg-6) ...
341s Selecting previously unselected package nanook-examples.
341s Preparing to unpack .../113-nanook-examples_1.33+dfsg-6_all.deb ...
341s Unpacking nanook-examples (1.33+dfsg-6) ...
341s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
341s Setting up liblcms2-2:arm64 (2.16-2) ...
341s Setting up libpixman-1-0:arm64 (0.44.0-3) ...
341s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ...
341s Setting up nanook-examples (1.33+dfsg-6) ...
341s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
341s Setting up libxpm4:arm64 (1:3.5.17-1build2) ...
341s Setting up libxi6:arm64 (2:1.8.2-1) ...
341s Setting up java-common (0.76) ...
341s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ...
341s Setting up libdatrie1:arm64 (0.2.13-3build1) ...
341s Setting up libxcb-render0:arm64 (1.17.0-2) ...
341s Setting up unzip (6.0-28ubuntu6) ...
341s Setting up x11-common (1:7.7+23ubuntu3) ...
341s Setting up libdeflate0:arm64 (1.23-1) ...
341s Setting up libxcb-shm0:arm64 (1.17.0-2) ...
341s Setting up libgomp1:arm64 (15-20250213-1ubuntu1) ...
341s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ...
341s Setting up libaec0:arm64 (1.1.3-1) ...
341s Setting up last-align (1609-1) ...
341s Setting up tex-common (6.18) ...
341s update-language: texlive-base not installed and configured, doing nothing!
341s Setting up zip (3.0-14ubuntu2) ...
341s Setting up libblas3:arm64 (3.12.1-2) ...
342s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
342s Setting up libzzip-0-13t64:arm64 (0.13.72+dfsg.1-1.2build1) ...
342s Setting up libteckit0:arm64 (2.5.12+ds1-1) ...
342s Setting up libapache-pom-java (33-2) ...
342s Setting up t1utils (1.41-4build3) ...
342s Setting up libtexlua53-5:arm64 (2024.20240313.70630+ds-5build2) ...
342s Setting up fonts-dejavu-mono (2.37-8) ...
342s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ...
342s Setting up libmpfi0:arm64 (1.5.4+ds-4) ...
342s Setting up fonts-dejavu-core (2.37-8) ...
342s Setting up libpcsclite1:arm64 (2.3.1-1) ...
342s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ...
342s Setting up libkpathsea6:arm64 (2024.20240313.70630+ds-5build2) ...
342s Setting up libgfortran5:arm64 (15-20250213-1ubuntu1) ...
342s Setting up libwebp7:arm64 (1.5.0-0.1) ...
342s Setting up fonts-lmodern (2.005-1) ...
342s Setting up libharfbuzz0b:arm64 (10.2.0-1) ...
342s Setting up libthai-data (0.1.29-2build1) ...
342s Setting up libxss1:arm64 (1:1.2.3-1build3) ...
342s Setting up libpaper2:arm64 (2.2.5-0.3) ...
342s Setting up ca-certificates-java (20240118) ...
342s No JRE found. Skipping Java certificates setup.
342s Setting up xdg-utils (1.2.1-2ubuntu1) ...
342s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
342s Setting up libsz2:arm64 (1.1.3-1) ...
342s Setting up libsynctex2:arm64 (2024.20240313.70630+ds-5build2) ...
342s Setting up libpotrace0:arm64 (1.16-2build1) ...
342s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
342s Setting up libice6:arm64 (2:1.1.1-1) ...
342s Setting up liblapack3:arm64 (3.12.1-2) ...
342s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
342s Setting up openjdk-21-jre-headless:arm64 (21.0.6+7-1) ...
342s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode
342s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode
342s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
342s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
342s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
342s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
342s Setting up libcommons-parent-java (56-1) ...
342s Setting up libpaper-utils (2.2.5-0.3) ...
342s Setting up libthai0:arm64 (0.1.29-2build1) ...
342s Setting up libptexenc1:arm64 (2024.20240313.70630+ds-5build2) ...
342s Setting up libhdf5-310:arm64 (1.14.5+repack-3) ...
342s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ...
342s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ...
342s Setting up libsm6:arm64 (2:1.2.4-1) ...
342s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3) ...
342s Setting up fontconfig (2.15.0-2ubuntu1) ...
344s Regenerating fonts cache... done.
344s Setting up libxft2:arm64 (2.3.6-1build1) ...
344s Setting up libcommons-io-java (2.18.0-1) ...
344s Setting up libtk8.6:arm64 (8.6.16-1) ...
344s Setting up libpango-1.0-0:arm64 (1.56.1-1) ...
344s Setting up libcairo2:arm64 (1.18.2-2) ...
344s Setting up hdf5-tools (1.14.5+repack-3) ...
344s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ...
344s Setting up libpangoft2-1.0-0:arm64 (1.56.1-1) ...
344s Setting up libpangocairo-1.0-0:arm64 (1.56.1-1) ...
344s Setting up libxmu6:arm64 (2:1.1.3-3build2) ...
344s Setting up libxaw7:arm64 (2:1.0.16-1) ...
344s Setting up r-base-core (4.4.2-1build1) ...
345s Creating config file /etc/R/Renviron with new version
345s Setting up r-cran-labeling (0.4.3-1) ...
345s Setting up r-cran-lattice (0.22-6-1) ...
345s Setting up r-cran-nlme (3.1.167-1) ...
345s Setting up r-cran-farver (2.1.2-1) ...
345s Setting up r-cran-viridislite (0.4.2-2) ...
345s Setting up texlive-binaries (2024.20240313.70630+ds-5build2) ...
345s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
345s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
345s Setting up r-cran-r6 (2.5.1-1) ...
345s Setting up r-cran-pkgkitten (0.2.4-1) ...
345s Setting up texlive-base (2024.20241115-1) ...
346s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
346s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
346s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
347s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
347s Setting up r-cran-magrittr (2.0.3-1) ...
347s Setting up r-cran-littler (0.3.20-2) ...
347s Setting up r-cran-rcpp (1.0.14-1) ...
347s Setting up r-cran-rlang (1.1.5-1) ...
347s Setting up littler (0.3.20-2) ...
347s Setting up r-cran-withr (3.0.2+dfsg-1) ...
347s Setting up r-cran-fansi (1.0.5-1) ...
347s Setting up r-cran-mass (7.3-64-1) ...
347s Setting up r-cran-glue (1.8.0-1) ...
347s Setting up r-cran-cli (3.6.3-1) ...
347s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
347s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
347s Setting up r-cran-utf8 (1.2.4-1) ...
347s Setting up r-cran-colorspace (2.1-1+dfsg-1) ...
347s Setting up texlive-latex-base (2024.20241115-1) ...
347s Setting up r-cran-plyr (1.8.9-1) ...
347s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
347s Setting up r-cran-isoband (0.2.7-1) ...
347s Setting up r-cran-gtable (0.3.6+dfsg-1) ...
347s Setting up r-cran-matrix (1.7-2-1) ...
347s Setting up r-cran-mgcv (1.9-1-1) ...
347s Setting up r-cran-vctrs (0.6.5-1) ...
347s Setting up r-cran-pillar (1.10.1+dfsg-1) ...
347s Setting up r-cran-reshape (0.8.9-1) ...
347s Setting up r-cran-munsell (0.5.1-1) ...
347s Setting up r-cran-tibble (3.2.1+dfsg-3) ...
347s Setting up r-cran-gridextra (2.3-3build1) ...
347s Setting up r-cran-scales (1.3.0-1) ...
347s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ...
347s Processing triggers for libc-bin (2.40-4ubuntu1) ...
347s Processing triggers for man-db (2.13.0-1) ...
349s Processing triggers for install-info (7.1.1-1) ...
349s Processing triggers for ca-certificates-java (20240118) ...
350s Adding debian:ACCVRAIZ1.pem
350s Adding debian:AC_RAIZ_FNMT-RCM.pem
350s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem
350s Adding debian:ANF_Secure_Server_Root_CA.pem
350s Adding debian:Actalis_Authentication_Root_CA.pem
350s Adding debian:AffirmTrust_Commercial.pem
350s Adding debian:AffirmTrust_Networking.pem
350s Adding debian:AffirmTrust_Premium.pem
350s Adding debian:AffirmTrust_Premium_ECC.pem
350s Adding debian:Amazon_Root_CA_1.pem
350s Adding debian:Amazon_Root_CA_2.pem
350s Adding debian:Amazon_Root_CA_3.pem
350s Adding debian:Amazon_Root_CA_4.pem
350s Adding debian:Atos_TrustedRoot_2011.pem
350s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem
350s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem
350s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
350s Adding debian:BJCA_Global_Root_CA1.pem
350s Adding debian:BJCA_Global_Root_CA2.pem
350s Adding debian:Baltimore_CyberTrust_Root.pem
350s Adding debian:Buypass_Class_2_Root_CA.pem
350s Adding debian:Buypass_Class_3_Root_CA.pem
350s Adding debian:CA_Disig_Root_R2.pem
350s Adding debian:CFCA_EV_ROOT.pem
350s Adding debian:COMODO_Certification_Authority.pem
350s Adding debian:COMODO_ECC_Certification_Authority.pem
350s Adding debian:COMODO_RSA_Certification_Authority.pem
350s Adding debian:Certainly_Root_E1.pem
350s Adding debian:Certainly_Root_R1.pem
350s Adding debian:Certigna.pem
350s Adding debian:Certigna_Root_CA.pem
350s Adding debian:Certum_EC-384_CA.pem
350s Adding debian:Certum_Trusted_Network_CA.pem
350s Adding debian:Certum_Trusted_Network_CA_2.pem
350s Adding debian:Certum_Trusted_Root_CA.pem
350s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem
350s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem
350s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem
350s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem
350s Adding debian:Comodo_AAA_Services_root.pem
350s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem
350s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem
350s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
350s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
350s Adding debian:DigiCert_Assured_ID_Root_CA.pem
350s Adding debian:DigiCert_Assured_ID_Root_G2.pem
350s Adding debian:DigiCert_Assured_ID_Root_G3.pem
350s Adding debian:DigiCert_Global_Root_CA.pem
350s Adding debian:DigiCert_Global_Root_G2.pem
350s Adding debian:DigiCert_Global_Root_G3.pem
350s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
350s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem
350s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem
350s Adding debian:DigiCert_Trusted_Root_G4.pem
350s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
350s Adding debian:Entrust_Root_Certification_Authority.pem
350s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
350s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
350s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem
350s Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem
350s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem
350s Adding debian:GLOBALTRUST_2020.pem
350s Adding debian:GTS_Root_R1.pem
350s Adding debian:GTS_Root_R2.pem
350s Adding debian:GTS_Root_R3.pem
350s Adding debian:GTS_Root_R4.pem
350s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
350s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
350s Adding debian:GlobalSign_Root_CA.pem
350s Adding debian:GlobalSign_Root_CA_-_R3.pem
350s Adding debian:GlobalSign_Root_CA_-_R6.pem
350s Adding debian:GlobalSign_Root_E46.pem
350s Adding debian:GlobalSign_Root_R46.pem
350s Adding debian:Go_Daddy_Class_2_CA.pem
350s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
350s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem
350s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem
350s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
350s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
350s Adding debian:HiPKI_Root_CA_-_G1.pem
350s Adding debian:Hongkong_Post_Root_CA_3.pem
350s Adding debian:ISRG_Root_X1.pem
350s Adding debian:ISRG_Root_X2.pem
350s Adding debian:IdenTrust_Commercial_Root_CA_1.pem
350s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
350s Adding debian:Izenpe.com.pem
350s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
350s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem
350s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem
350s Adding debian:NAVER_Global_Root_Certification_Authority.pem
350s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
350s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
350s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem
350s Adding debian:QuoVadis_Root_CA_1_G3.pem
350s Adding debian:QuoVadis_Root_CA_2.pem
350s Adding debian:QuoVadis_Root_CA_2_G3.pem
350s Adding debian:QuoVadis_Root_CA_3.pem
350s Adding debian:QuoVadis_Root_CA_3_G3.pem
350s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem
350s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem
350s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem
350s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem
350s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem
350s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem
350s Adding debian:SZAFIR_ROOT_CA2.pem
350s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem
350s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem
350s Adding debian:SecureSign_RootCA11.pem
350s Adding debian:SecureSign_Root_CA12.pem
350s Adding debian:SecureSign_Root_CA14.pem
350s Adding debian:SecureSign_Root_CA15.pem
350s Adding debian:SecureTrust_CA.pem
350s Adding debian:Secure_Global_CA.pem
350s Adding debian:Security_Communication_ECC_RootCA1.pem
350s Adding debian:Security_Communication_RootCA2.pem
350s Adding debian:Security_Communication_RootCA3.pem
350s Adding debian:Starfield_Class_2_CA.pem
350s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
350s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
350s Adding debian:SwissSign_Gold_CA_-_G2.pem
350s Adding debian:SwissSign_Silver_CA_-_G2.pem
350s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
350s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
350s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
350s Adding debian:TWCA_CYBER_Root_CA.pem
350s Adding debian:TWCA_Global_Root_CA.pem
350s Adding debian:TWCA_Root_Certification_Authority.pem
350s Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem
350s Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem
350s Adding debian:TeliaSonera_Root_CA_v1.pem
350s Adding debian:Telia_Root_CA_v2.pem
350s Adding debian:TrustAsia_Global_Root_CA_G3.pem
350s Adding debian:TrustAsia_Global_Root_CA_G4.pem
350s Adding debian:Trustwave_Global_Certification_Authority.pem
350s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem
350s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem
350s Adding debian:TunTrust_Root_CA.pem
350s Adding debian:UCA_Extended_Validation_Root.pem
350s Adding debian:UCA_Global_G2_Root.pem
350s Adding debian:USERTrust_ECC_Certification_Authority.pem
350s Adding debian:USERTrust_RSA_Certification_Authority.pem
350s Adding debian:XRamp_Global_CA_Root.pem
350s Adding debian:certSIGN_ROOT_CA.pem
350s Adding debian:certSIGN_Root_CA_G2.pem
350s Adding debian:e-Szigno_Root_CA_2017.pem
350s Adding debian:ePKI_Root_Certification_Authority.pem
350s Adding debian:emSign_ECC_Root_CA_-_C3.pem
350s Adding debian:emSign_ECC_Root_CA_-_G3.pem
350s Adding debian:emSign_Root_CA_-_C1.pem
350s Adding debian:emSign_Root_CA_-_G1.pem
350s Adding debian:vTrus_ECC_Root_CA.pem
350s Adding debian:vTrus_Root_CA.pem
350s done.
350s Setting up default-jre-headless (2:1.21-76) ...
350s Setting up nanook (1.33+dfsg-6) ...
350s Processing triggers for tex-common (6.18) ...
351s Running updmap-sys. This may take some time... done.
351s Running mktexlsr /var/lib/texmf ... done.
351s Building format(s) --all.
386s 	This may take some time... done.
387s autopkgtest [12:27:37]: test run-unit-test: [-----------------------
399s 
399s NanoOK v1.33
399s 
399s Comments/bugs to: richard.leggett@earlham.ac.uk
399s Follow NanoOK on twitter: @NanoOK_Software
399s 
399s Scripts dir: /usr/share/nanook/bin
399s 
399s Checking dependencies
399s *** ERROR: Couldn't find Rscript - is R installed? ***
399s pdfTeX 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian)
399s h5dump: Version 1.14.5
399s 
399s Making directory /tmp/autopkgtest.Pregfq/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/fasta
399s Checking FAST5 directory structure...
399s   Using pass/fail dirs: yes
399s       Using batch dirs: no
399s         Using barcodes: no
399s 
402s 
Processing [                                                  ] 0/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
402s 
402s DONE
402s 
402s NanoOK v1.33
402s 
402s Comments/bugs to: richard.leggett@earlham.ac.uk
402s Follow NanoOK on twitter: @NanoOK_Software
402s 
402s Scripts dir: /usr/share/nanook/bin
402s 
402s Checking dependencies
402s *** ERROR: Couldn't find Rscript - is R installed? ***
402s pdfTeX 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian)
402s h5dump: Version 1.14.5
402s 
402s Making directory /tmp/autopkgtest.Pregfq/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/last
402s Making directory /tmp/autopkgtest.Pregfq/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/logs/last
402s Checking FASTA/Q directory structure...
402s   Using pass/fail dirs: yes
402s       Using batch dirs: no
402s         Using barcodes: no
402s 
405s 
Processing [                                                  ] 0/3
Processing [================                                  ] 1/3
Processing [==================================================] 3/3
Processing [==================================================] 3/3
Processing [==================================================] 3/3
Processing [==================================================] 3/3
Processing [==================================================] 3/3
405s 
405s DONE
405s 
405s NanoOK v1.33
405s 
405s Comments/bugs to: richard.leggett@earlham.ac.uk
405s Follow NanoOK on twitter: @NanoOK_Software
405s 
405s Scripts dir: /usr/share/nanook/bin
405s 
405s Checking dependencies
405s *** ERROR: Couldn't find Rscript - is R installed? ***
405s pdfTeX 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian)
405s h5dump: Version 1.14.5
405s 
405s Checking FASTA/Q directory structure...
405s   Using pass/fail dirs: yes
405s       Using batch dirs: no
405s         Using barcodes: no
405s 
405s Using .sizes file ecoli_dh10b_cs.fasta.sizes
405s Note: if you have changed the reference file, you need to delete the .sizes file and re-run.
405s 
405s Reading reference sizes and making directories
405s 	Escherichia_coli	4686137
405s 	Control_sequence	3560
405s 
405s Calculating reference GC
405s 	Escherichia_coli
406s 	Control_sequence
406s 
406s Parsing Template
406s 
[                                                  ] 0/1
[==================================================] 1/1
406s 
406s Error: unable to find any Template alignments to process.
406s Common reasons for this:
406s 1. Failure to index the reference with the alignment tool, resulting in alignment files of 0 bytes
406s 2. Wrong reference specified to the align stage, resulting in no alignments
406s 3. When indexing with LAST, the output prefix needs to be the same as the reference FASTA file, minus the .fasta extension
406s    e.g. lastdb -Q 0 referencename referencename.fasta
406s 
407s autopkgtest [12:27:57]: test run-unit-test: -----------------------]
407s autopkgtest [12:27:57]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
407s run-unit-test        FAIL non-zero exit status 1
408s autopkgtest [12:27:58]: @@@@@@@@@@@@@@@@@@@@ summary
408s run-unit-test        FAIL non-zero exit status 1
414s nova [W] Using flock in prodstack6-arm64
414s Creating nova instance adt-plucky-arm64-nanook-20250219-114601-juju-7f2275-prod-proposed-migration-environment-2-7592d4ee-24cd-4840-8312-80fb99a1604e from image adt/ubuntu-plucky-arm64-server-20250219.img (UUID 02c92adb-9d9d-4b0e-b071-488d8ee6210f)...
414s nova [W] Timed out waiting for ffa01955-56ab-41be-ab93-049ad81eff8a to get deleted.