0s autopkgtest [11:59:18]: starting date and time: 2025-02-19 11:59:18+0000 0s autopkgtest [11:59:18]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [11:59:18]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.l1ph_t_r/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:sphinx --apt-upgrade mdanalysis --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sphinx/8.1.3-5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-16.secgroup --name adt-plucky-arm64-mdanalysis-20250219-115918-juju-7f2275-prod-proposed-migration-environment-2-3eb5cbba-6f05-423f-8b6c-d41b41aae8c9 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 147s autopkgtest [12:01:45]: testbed dpkg architecture: arm64 148s autopkgtest [12:01:46]: testbed apt version: 2.9.29 148s autopkgtest [12:01:46]: @@@@@@@@@@@@@@@@@@@@ test bed setup 148s autopkgtest [12:01:46]: testbed release detected to be: None 149s autopkgtest [12:01:47]: updating testbed package index (apt update) 149s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 150s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 150s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 150s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 150s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.1 kB] 150s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.9 kB] 150s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B] 150s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [750 kB] 150s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [93.3 kB] 150s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [7960 B] 150s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [686 kB] 150s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [11.2 kB] 150s Fetched 1752 kB in 1s (1746 kB/s) 152s Reading package lists... 153s Reading package lists... 153s Building dependency tree... 153s Reading state information... 154s Calculating upgrade... 155s The following NEW packages will be installed: 155s libapt-pkg7.0 155s The following packages will be upgraded: 155s apt apt-utils iproute2 liblsof0 libp11-kit0 lsof rsyslog 156s 7 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 156s Need to get 4842 kB of archives. 156s After this operation, 3409 kB of additional disk space will be used. 156s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libapt-pkg7.0 arm64 2.9.30 [1023 kB] 156s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 apt arm64 2.9.30 [1364 kB] 157s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 apt-utils arm64 2.9.30 [207 kB] 157s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 iproute2 arm64 6.13.0-1ubuntu1 [1158 kB] 157s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libp11-kit0 arm64 0.25.5-2ubuntu3 [280 kB] 157s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 rsyslog arm64 8.2412.0-2ubuntu1 [521 kB] 157s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 lsof arm64 4.99.4+dfsg-1 [236 kB] 157s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsof0 arm64 4.99.4+dfsg-1 [53.9 kB] 158s Preconfiguring packages ... 158s Fetched 4842 kB in 1s (3266 kB/s) 158s Selecting previously unselected package libapt-pkg7.0:arm64. 159s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 116620 files and directories currently installed.) 159s Preparing to unpack .../libapt-pkg7.0_2.9.30_arm64.deb ... 159s Unpacking libapt-pkg7.0:arm64 (2.9.30) ... 159s Setting up libapt-pkg7.0:arm64 (2.9.30) ... 159s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 116669 files and directories currently installed.) 159s Preparing to unpack .../archives/apt_2.9.30_arm64.deb ... 159s Unpacking apt (2.9.30) over (2.9.29) ... 159s Setting up apt (2.9.30) ... 160s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 116669 files and directories currently installed.) 160s Preparing to unpack .../0-apt-utils_2.9.30_arm64.deb ... 160s Unpacking apt-utils (2.9.30) over (2.9.29) ... 160s Preparing to unpack .../1-iproute2_6.13.0-1ubuntu1_arm64.deb ... 161s Unpacking iproute2 (6.13.0-1ubuntu1) over (6.10.0-2ubuntu1) ... 161s Preparing to unpack .../2-libp11-kit0_0.25.5-2ubuntu3_arm64.deb ... 161s Unpacking libp11-kit0:arm64 (0.25.5-2ubuntu3) over (0.25.5-2ubuntu2) ... 161s Preparing to unpack .../3-rsyslog_8.2412.0-2ubuntu1_arm64.deb ... 161s Unpacking rsyslog (8.2412.0-2ubuntu1) over (8.2412.0-1ubuntu1) ... 161s Preparing to unpack .../4-lsof_4.99.4+dfsg-1_arm64.deb ... 161s Unpacking lsof (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ... 161s Preparing to unpack .../5-liblsof0_4.99.4+dfsg-1_arm64.deb ... 161s Unpacking liblsof0 (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ... 161s Setting up apt-utils (2.9.30) ... 161s Setting up liblsof0 (4.99.4+dfsg-1) ... 161s Setting up iproute2 (6.13.0-1ubuntu1) ... 162s Setting up rsyslog (8.2412.0-2ubuntu1) ... 162s info: The user `syslog' is already a member of `adm'. 164s Setting up libp11-kit0:arm64 (0.25.5-2ubuntu3) ... 164s Setting up lsof (4.99.4+dfsg-1) ... 164s Processing triggers for man-db (2.13.0-1) ... 166s Processing triggers for libc-bin (2.40-4ubuntu1) ... 168s Reading package lists... 169s Building dependency tree... 169s Reading state information... 170s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 170s autopkgtest [12:02:08]: upgrading testbed (apt dist-upgrade and autopurge) 170s Reading package lists... 171s Building dependency tree... 171s Reading state information... 172s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 172s Starting 2 pkgProblemResolver with broken count: 0 173s Done 175s Entering ResolveByKeep 175s 177s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 177s Reading package lists... 177s Building dependency tree... 177s Reading state information... 178s Starting pkgProblemResolver with broken count: 0 178s Starting 2 pkgProblemResolver with broken count: 0 178s Done 179s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 179s autopkgtest [12:02:17]: rebooting testbed after setup commands that affected boot 213s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 221s autopkgtest [12:02:59]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Tue Feb 4 15:49:33 UTC 2025 227s autopkgtest [12:03:05]: @@@@@@@@@@@@@@@@@@@@ apt-source mdanalysis 235s Get:1 http://ftpmaster.internal/ubuntu plucky/universe mdanalysis 2.8.0-2 (dsc) [2952 B] 235s Get:2 http://ftpmaster.internal/ubuntu plucky/universe mdanalysis 2.8.0-2 (tar) [60.8 MB] 235s Get:3 http://ftpmaster.internal/ubuntu plucky/universe mdanalysis 2.8.0-2 (diff) [11.1 kB] 236s gpgv: Signature made Fri Feb 14 13:13:06 2025 UTC 236s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 236s gpgv: issuer "dparsons@debian.org" 236s gpgv: Can't check signature: No public key 236s dpkg-source: warning: cannot verify inline signature for ./mdanalysis_2.8.0-2.dsc: no acceptable signature found 237s autopkgtest [12:03:15]: testing package mdanalysis version 2.8.0-2 238s autopkgtest [12:03:16]: build not needed 245s autopkgtest [12:03:23]: test test-mdanalysis: preparing testbed 245s Reading package lists... 246s Building dependency tree... 246s Reading state information... 247s Starting pkgProblemResolver with broken count: 0 247s Starting 2 pkgProblemResolver with broken count: 0 247s Done 249s The following NEW packages will be installed: 249s autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14 249s cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper debugedit 249s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz 249s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 249s fonts-lato fonts-lyx fonts-mathjax fonts-urw-base35 g++ g++-14 249s g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 249s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext intltool-debian 249s libaec0 libarchive-zip-perl libasan8 libblas3 libcairo2 libcc1-0 249s libdebhelper-perl libdeflate0 libexpat1-dev libfile-stripnondeterminism-perl 249s libfontconfig1 libfontenc1 libgcc-14-dev libgfortran5 libgomp1 249s libgraphite2-3 libharfbuzz0b libhdf5-310 libhdf5-hl-310 libhwasan0 249s libimagequant0 libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 249s libjs-jquery libjs-jquery-ui libjs-mathjax libjs-sphinxdoc libjs-underscore 249s libjson-perl liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblsan0 liblzf1 249s libmpc3 libnetcdf22 libopenjp2-7 libpixman-1-0 libpython3-all-dev 249s libpython3-dev libpython3.12-dev libpython3.13-dev libqhull-r8.0 libraqm0 249s libsharpyuv0 libstdc++-14-dev libsz2 libtcl8.6 libtiff6 libtk8.6 libtool 249s libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 249s libxcb-shm0 libxft2 libxrender1 libxslt1.1 libxss1 m4 po-debconf 249s pybuild-plugin-pyproject python-matplotlib-data python-mdanalysis-doc 249s python3-alabaster python3-all python3-all-dev python3-biopython 249s python3-brotli python3-build python3-cairo python3-cftime python3-citeproc 249s python3-contourpy python3-cycler python3-dateutil python3-decorator 249s python3-defusedxml python3-dev python3-docutils python3-duecredit 249s python3-fasteners python3-fonttools python3-freetype python3-fs 249s python3-griddataformats python3-gsd python3-h5py python3-h5py-serial 249s python3-hypothesis python3-imagesize python3-iniconfig python3-installer 249s python3-joblib python3-kiwisolver python3-latexcodec python3-looseversion 249s python3-lxml python3-lz4 python3-matplotlib python3-mda-xdrlib 249s python3-mdanalysis python3-mmtf python3-monotonic python3-mpmath 249s python3-mrcfile python3-msgpack python3-msmb-theme python3-netcdf4 249s python3-networkx python3-numpy python3-packaging python3-pandas 249s python3-pandas-lib python3-pil python3-pil.imagetk python3-platformdirs 249s python3-pluggy python3-pybtex python3-pybtex-docutils 249s python3-pyproject-hooks python3-pytest python3-pytz python3-reportlab 249s python3-rlpycairo python3-roman python3-scipy python3-seaborn python3-six 249s python3-sklearn python3-sklearn-lib python3-snowballstemmer 249s python3-sortedcontainers python3-sphinx python3-sphinx-rtd-theme 249s python3-sphinx-sitemap python3-sphinxcontrib.bibtex 249s python3-sphinxcontrib.jquery python3-sympy python3-threadpoolctl python3-tk 249s python3-toml python3-tqdm python3-tz python3-ufolib2 python3-unicodedata2 249s python3-wheel python3.12 python3.12-dev python3.12-minimal python3.12-tk 249s python3.13-dev python3.13-tk sgml-base sphinx-common sphinx-rtd-theme-common 249s tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xfonts-encodings 249s xfonts-utils xml-core zlib1g-dev 249s 0 upgraded, 207 newly installed, 0 to remove and 0 not upgraded. 249s Need to get 221 MB of archives. 249s After this operation, 993 MB of additional disk space will be used. 249s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-minimal arm64 3.12.9-1 [2236 kB] 249s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-lato all 2.015-1 [2781 kB] 250s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 sgml-base all 1.31 [11.4 kB] 250s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12 arm64 3.12.9-1 [671 kB] 250s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 m4 arm64 1.4.19-5 [244 kB] 250s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 autoconf all 2.72-3 [382 kB] 250s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 autotools-dev all 20220109.1 [44.9 kB] 250s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 automake all 1:1.17-3 [572 kB] 250s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 autopoint all 0.23.1-1 [619 kB] 250s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 250s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 250s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 250s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontenc1 arm64 1:1.1.8-1build1 [13.9 kB] 250s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 250s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 250s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 xfonts-utils arm64 1:7.7+7 [95.6 kB] 250s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-urw-base35 all 20200910-8 [11.0 MB] 250s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 250s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 250s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 250s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 250s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 250s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 250s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7build1 [618 kB] 250s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 blt arm64 2.5.3+dfsg-7build1 [4840 B] 250s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 250s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 250s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu1 [10.6 MB] 251s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu1 [1032 B] 251s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 251s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 251s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250213-1ubuntu1 [44.2 kB] 251s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250213-1ubuntu1 [146 kB] 251s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250213-1ubuntu1 [28.0 kB] 251s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250213-1ubuntu1 [2928 kB] 251s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250213-1ubuntu1 [1319 kB] 251s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250213-1ubuntu1 [2695 kB] 251s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250213-1ubuntu1 [1178 kB] 251s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250213-1ubuntu1 [1642 kB] 251s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu1 [2593 kB] 251s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu1 [20.9 MB] 251s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu1 [526 kB] 251s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 251s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 251s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu1 [2499 kB] 251s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu1 [12.1 MB] 252s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu1 [21.8 kB] 252s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 252s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 252s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 252s Get:51 http://ftpmaster.internal/ubuntu plucky/universe arm64 cython3 arm64 3.0.11+dfsg-2ubuntu1 [2974 kB] 252s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libdebhelper-perl all 13.24.1ubuntu2 [95.4 kB] 252s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libtool all 2.5.4-3build1 [168 kB] 252s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-autoreconf all 20 [16.1 kB] 252s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] 252s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [20.3 kB] 252s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-strip-nondeterminism all 1.14.1-2 [5064 B] 252s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 debugedit arm64 1:5.1-2 [46.1 kB] 252s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 dwz arm64 0.15-1build6 [113 kB] 252s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 gettext arm64 0.23.1-1 [998 kB] 252s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 252s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] 252s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 debhelper all 13.24.1ubuntu2 [895 kB] 252s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 dh-python all 6.20250108 [117 kB] 252s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 xml-core all 0.19 [20.3 kB] 252s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 docutils-common all 0.21.2+dfsg-2 [131 kB] 252s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 252s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lyx all 2.4.3-1 [171 kB] 252s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 252s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 252s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 252s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 252s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 252s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 252s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 252s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 252s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 libexpat1-dev arm64 2.6.4-1 [129 kB] 252s Get:78 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250213-1ubuntu1 [443 kB] 252s Get:79 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 252s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 252s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 252s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-310 arm64 1.14.5+repack-3 [1331 kB] 252s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [59.8 kB] 252s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 252s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 252s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 252s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 252s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 252s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 252s Get:90 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libjs-sphinxdoc all 8.1.3-5 [31.0 kB] 252s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libjson-perl all 4.10000-1 [81.9 kB] 252s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 252s Get:93 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 252s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 252s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 252s Get:96 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 252s Get:97 http://ftpmaster.internal/ubuntu plucky/universe arm64 libnetcdf22 arm64 1:4.9.3-1 [504 kB] 252s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 252s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-dev arm64 3.13.2-1 [5399 kB] 253s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3-dev arm64 3.13.1-1~exp2 [10.5 kB] 253s Get:101 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.12-dev arm64 3.12.9-1 [5569 kB] 253s Get:102 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3-all-dev arm64 3.13.1-1~exp2 [922 B] 253s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 253s Get:104 http://ftpmaster.internal/ubuntu plucky/main arm64 libraqm0 arm64 0.10.2-1 [14.9 kB] 253s Get:105 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 253s Get:106 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 253s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 253s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 253s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [12.5 kB] 253s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpmux3 arm64 1.5.0-0.1 [25.4 kB] 253s Get:111 http://ftpmaster.internal/ubuntu plucky/main arm64 libxslt1.1 arm64 1.1.39-0exp1ubuntu2 [168 kB] 253s Get:112 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.2-1 [51.5 kB] 253s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 253s Get:114 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-toml all 0.10.2-1 [16.5 kB] 253s Get:115 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-wheel all 0.45.1-1 [57.7 kB] 253s Get:116 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-build all 1.2.2-1 [31.0 kB] 253s Get:117 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 253s Get:118 http://ftpmaster.internal/ubuntu plucky/universe arm64 pybuild-plugin-pyproject all 6.20250108 [1726 B] 253s Get:119 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-matplotlib-data all 3.8.3-3ubuntu2 [2929 kB] 254s Get:120 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 254s Get:121 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-mdanalysis-doc all 2.8.0-2 [3459 kB] 254s Get:122 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-all arm64 3.13.1-1~exp2 [894 B] 254s Get:123 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-dev arm64 3.13.2-1 [508 kB] 254s Get:124 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dev arm64 3.13.1-1~exp2 [26.7 kB] 254s Get:125 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-dev arm64 3.12.9-1 [505 kB] 254s Get:126 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-all-dev arm64 3.13.1-1~exp2 [918 B] 254s Get:127 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-13 [4148 kB] 254s Get:128 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-tk arm64 3.12.9-1 [115 kB] 254s Get:129 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-tk arm64 3.13.2-1 [106 kB] 254s Get:130 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tk arm64 3.13.1-1 [9770 B] 254s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pil.imagetk arm64 11.1.0-5 [9948 B] 254s Get:132 http://ftpmaster.internal/ubuntu plucky/main arm64 libopenjp2-7 arm64 2.5.0-2ubuntu3 [182 kB] 254s Get:133 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pil arm64 11.1.0-5 [491 kB] 254s Get:134 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-cairo arm64 1.26.1-2build1 [139 kB] 254s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-freetype all 2.5.1-1 [92.3 kB] 254s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-rlpycairo all 0.3.0-3 [9130 B] 254s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-reportlab all 4.3.0-1 [1137 kB] 254s Get:138 http://ftpmaster.internal/ubuntu plucky/universe arm64 w3c-sgml-lib all 1.3-3 [280 kB] 254s Get:139 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-biopython arm64 1.85+dfsg-2 [1718 kB] 254s Get:140 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-brotli arm64 1.1.0-2build3 [342 kB] 254s Get:141 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-cftime arm64 1.6.4-1build2 [289 kB] 254s Get:142 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-lxml arm64 5.3.1-1 [1600 kB] 255s Get:143 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-citeproc all 0.6.0-3 [98.4 kB] 255s Get:144 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-contourpy arm64 1.3.1-1 [216 kB] 255s Get:145 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-cycler all 0.12.1-1 [9716 B] 255s Get:146 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-3 [80.2 kB] 255s Get:147 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 255s Get:148 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-defusedxml all 0.7.1-3 [42.2 kB] 255s Get:149 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-roman all 5.0-1 [10.3 kB] 255s Get:150 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-docutils all 0.21.2+dfsg-2 [409 kB] 255s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-looseversion all 1.3.0-3 [8354 B] 255s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-duecredit all 0.10.2-2 [66.0 kB] 255s Get:153 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-monotonic all 1.6-3 [5344 B] 255s Get:154 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-fasteners all 0.18-2 [12.5 kB] 255s Get:155 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pytz all 2025.1-3 [162 kB] 255s Get:156 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tz all 2025.1-3 [1866 B] 255s Get:157 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-platformdirs all 4.3.6-1 [16.8 kB] 255s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fs all 2.4.16-6 [90.7 kB] 255s Get:159 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-lz4 arm64 4.4.0+dfsg-1 [27.3 kB] 255s Get:160 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.14.1-4ubuntu1 [19.5 MB] 255s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mpmath all 1.3.0-1 [425 kB] 255s Get:162 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sympy all 1.13.3-1 [4228 kB] 256s Get:163 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB] 256s Get:164 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-unicodedata2 arm64 15.1.0+ds-1build2 [360 kB] 256s Get:165 http://ftpmaster.internal/ubuntu plucky/universe arm64 unicode-data all 15.1.0-1 [8878 kB] 256s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fonttools arm64 4.55.3-2 [1615 kB] 256s Get:167 http://ftpmaster.internal/ubuntu plucky/main arm64 sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1014 kB] 256s Get:168 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mrcfile all 1.5.4-2 [116 kB] 256s Get:169 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-griddataformats all 1.0.2-2 [2107 kB] 256s Get:170 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-gsd arm64 3.3.0-1build2 [229 kB] 256s Get:171 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py-serial arm64 3.12.1-1 [1453 kB] 257s Get:172 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py all 3.12.1-1 [7970 B] 257s Get:173 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-sortedcontainers all 2.4.0-2 [27.6 kB] 257s Get:174 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-hypothesis all 6.125.2-1 [333 kB] 257s Get:175 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-imagesize all 1.4.1-1 [6844 B] 257s Get:176 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 257s Get:177 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-joblib all 1.4.2-2 [205 kB] 257s Get:178 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-kiwisolver arm64 1.4.7-3 [62.5 kB] 257s Get:179 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-latexcodec all 3.0.0-1 [16.6 kB] 257s Get:180 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-matplotlib arm64 3.8.3-3ubuntu2 [4616 kB] 257s Get:181 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mda-xdrlib all 0.2.0-3 [11.4 kB] 257s Get:182 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-msgpack arm64 1.0.3-3build3 [106 kB] 257s Get:183 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mmtf all 1.1.3-1 [16.2 kB] 257s Get:184 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 257s Get:185 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-tqdm all 4.67.1-2 [92.5 kB] 257s Get:186 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mdanalysis arm64 2.8.0-2 [4503 kB] 257s Get:187 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 sphinx-common all 8.1.3-5 [663 kB] 257s Get:188 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-alabaster all 0.7.16-0.1 [18.5 kB] 257s Get:189 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 257s Get:190 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-sphinx all 8.1.3-5 [474 kB] 257s Get:191 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sphinxcontrib.jquery all 4.1-5 [6678 B] 257s Get:192 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sphinx-rtd-theme all 3.0.2+dfsg-2 [23.5 kB] 257s Get:193 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-msmb-theme all 1.2.0-4 [35.4 kB] 257s Get:194 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-netcdf4 arm64 1.7.2-1build3 [797 kB] 257s Get:195 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 257s Get:196 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas-lib arm64 2.2.3+dfsg-8 [6925 kB] 258s Get:197 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas all 2.2.3+dfsg-8 [3112 kB] 258s Get:198 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 258s Get:199 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-six all 1.17.0-1 [13.2 kB] 258s Get:200 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pybtex all 0.24.0-4 [70.0 kB] 258s Get:201 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pybtex-docutils all 1.0.2-1 [7176 B] 258s Get:202 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.4-1 [252 kB] 258s Get:203 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-seaborn all 0.13.2-4.1 [225 kB] 258s Get:204 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sklearn-lib arm64 1.4.2+dfsg-7build1 [6372 kB] 259s Get:205 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sklearn all 1.4.2+dfsg-7build1 [2258 kB] 259s Get:206 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sphinx-sitemap all 2.6.0-1 [6674 B] 259s Get:207 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sphinxcontrib.bibtex all 2.6.2-1 [25.2 kB] 260s Fetched 221 MB in 10s (21.9 MB/s) 260s Selecting previously unselected package python3.12-minimal. 261s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 116670 files and directories currently installed.) 261s Preparing to unpack .../000-python3.12-minimal_3.12.9-1_arm64.deb ... 261s Unpacking python3.12-minimal (3.12.9-1) ... 261s Selecting previously unselected package fonts-lato. 261s Preparing to unpack .../001-fonts-lato_2.015-1_all.deb ... 261s Unpacking fonts-lato (2.015-1) ... 261s Selecting previously unselected package sgml-base. 261s Preparing to unpack .../002-sgml-base_1.31_all.deb ... 261s Unpacking sgml-base (1.31) ... 261s Selecting previously unselected package python3.12. 261s Preparing to unpack .../003-python3.12_3.12.9-1_arm64.deb ... 261s Unpacking python3.12 (3.12.9-1) ... 261s Selecting previously unselected package m4. 261s Preparing to unpack .../004-m4_1.4.19-5_arm64.deb ... 261s Unpacking m4 (1.4.19-5) ... 261s Selecting previously unselected package autoconf. 261s Preparing to unpack .../005-autoconf_2.72-3_all.deb ... 261s Unpacking autoconf (2.72-3) ... 261s Selecting previously unselected package autotools-dev. 261s Preparing to unpack .../006-autotools-dev_20220109.1_all.deb ... 261s Unpacking autotools-dev (20220109.1) ... 261s Selecting previously unselected package automake. 262s Preparing to unpack .../007-automake_1%3a1.17-3_all.deb ... 262s Unpacking automake (1:1.17-3) ... 262s Selecting previously unselected package autopoint. 262s Preparing to unpack .../008-autopoint_0.23.1-1_all.deb ... 262s Unpacking autopoint (0.23.1-1) ... 262s Selecting previously unselected package libtcl8.6:arm64. 262s Preparing to unpack .../009-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 262s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 262s Selecting previously unselected package fonts-dejavu-mono. 262s Preparing to unpack .../010-fonts-dejavu-mono_2.37-8_all.deb ... 262s Unpacking fonts-dejavu-mono (2.37-8) ... 262s Selecting previously unselected package fonts-dejavu-core. 262s Preparing to unpack .../011-fonts-dejavu-core_2.37-8_all.deb ... 262s Unpacking fonts-dejavu-core (2.37-8) ... 262s Selecting previously unselected package libfontenc1:arm64. 262s Preparing to unpack .../012-libfontenc1_1%3a1.1.8-1build1_arm64.deb ... 262s Unpacking libfontenc1:arm64 (1:1.1.8-1build1) ... 262s Selecting previously unselected package x11-common. 262s Preparing to unpack .../013-x11-common_1%3a7.7+23ubuntu3_all.deb ... 262s Unpacking x11-common (1:7.7+23ubuntu3) ... 262s Selecting previously unselected package xfonts-encodings. 262s Preparing to unpack .../014-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 262s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 262s Selecting previously unselected package xfonts-utils. 262s Preparing to unpack .../015-xfonts-utils_1%3a7.7+7_arm64.deb ... 262s Unpacking xfonts-utils (1:7.7+7) ... 262s Selecting previously unselected package fonts-urw-base35. 263s Preparing to unpack .../016-fonts-urw-base35_20200910-8_all.deb ... 263s Unpacking fonts-urw-base35 (20200910-8) ... 263s Selecting previously unselected package fontconfig-config. 263s Preparing to unpack .../017-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 263s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 263s Selecting previously unselected package libfontconfig1:arm64. 263s Preparing to unpack .../018-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 263s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 264s Selecting previously unselected package libxrender1:arm64. 264s Preparing to unpack .../019-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 264s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 264s Selecting previously unselected package libxft2:arm64. 264s Preparing to unpack .../020-libxft2_2.3.6-1build1_arm64.deb ... 264s Unpacking libxft2:arm64 (2.3.6-1build1) ... 264s Selecting previously unselected package libxss1:arm64. 264s Preparing to unpack .../021-libxss1_1%3a1.2.3-1build3_arm64.deb ... 264s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 264s Selecting previously unselected package libtk8.6:arm64. 264s Preparing to unpack .../022-libtk8.6_8.6.16-1_arm64.deb ... 264s Unpacking libtk8.6:arm64 (8.6.16-1) ... 264s Selecting previously unselected package tk8.6-blt2.5. 264s Preparing to unpack .../023-tk8.6-blt2.5_2.5.3+dfsg-7build1_arm64.deb ... 264s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 264s Selecting previously unselected package blt. 264s Preparing to unpack .../024-blt_2.5.3+dfsg-7build1_arm64.deb ... 264s Unpacking blt (2.5.3+dfsg-7build1) ... 264s Selecting previously unselected package libisl23:arm64. 264s Preparing to unpack .../025-libisl23_0.27-1_arm64.deb ... 264s Unpacking libisl23:arm64 (0.27-1) ... 264s Selecting previously unselected package libmpc3:arm64. 264s Preparing to unpack .../026-libmpc3_1.3.1-1build2_arm64.deb ... 264s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 264s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 264s Preparing to unpack .../027-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu1_arm64.deb ... 264s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu1) ... 265s Selecting previously unselected package cpp-14. 265s Preparing to unpack .../028-cpp-14_14.2.0-17ubuntu1_arm64.deb ... 265s Unpacking cpp-14 (14.2.0-17ubuntu1) ... 265s Selecting previously unselected package cpp-aarch64-linux-gnu. 265s Preparing to unpack .../029-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 265s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 265s Selecting previously unselected package cpp. 265s Preparing to unpack .../030-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 265s Unpacking cpp (4:14.2.0-1ubuntu1) ... 265s Selecting previously unselected package libcc1-0:arm64. 265s Preparing to unpack .../031-libcc1-0_15-20250213-1ubuntu1_arm64.deb ... 265s Unpacking libcc1-0:arm64 (15-20250213-1ubuntu1) ... 265s Selecting previously unselected package libgomp1:arm64. 265s Preparing to unpack .../032-libgomp1_15-20250213-1ubuntu1_arm64.deb ... 265s Unpacking libgomp1:arm64 (15-20250213-1ubuntu1) ... 265s Selecting previously unselected package libitm1:arm64. 265s Preparing to unpack .../033-libitm1_15-20250213-1ubuntu1_arm64.deb ... 265s Unpacking libitm1:arm64 (15-20250213-1ubuntu1) ... 266s Selecting previously unselected package libasan8:arm64. 266s Preparing to unpack .../034-libasan8_15-20250213-1ubuntu1_arm64.deb ... 266s Unpacking libasan8:arm64 (15-20250213-1ubuntu1) ... 266s Selecting previously unselected package liblsan0:arm64. 266s Preparing to unpack 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.../045-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu1_arm64.deb ... 268s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu1) ... 268s Selecting previously unselected package g++-14. 269s Preparing to unpack .../046-g++-14_14.2.0-17ubuntu1_arm64.deb ... 269s Unpacking g++-14 (14.2.0-17ubuntu1) ... 269s Selecting previously unselected package g++-aarch64-linux-gnu. 269s Preparing to unpack .../047-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 269s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 269s Selecting previously unselected package g++. 269s Preparing to unpack .../048-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 269s Unpacking g++ (4:14.2.0-1ubuntu1) ... 269s Selecting previously unselected package build-essential. 269s Preparing to unpack .../049-build-essential_12.10ubuntu1_arm64.deb ... 269s Unpacking build-essential (12.10ubuntu1) ... 269s Selecting previously unselected package cython3. 269s Preparing to unpack .../050-cython3_3.0.11+dfsg-2ubuntu1_arm64.deb ... 269s Unpacking cython3 (3.0.11+dfsg-2ubuntu1) ... 269s Selecting previously unselected package libdebhelper-perl. 270s Preparing to unpack .../051-libdebhelper-perl_13.24.1ubuntu2_all.deb ... 270s Unpacking libdebhelper-perl (13.24.1ubuntu2) ... 270s Selecting previously unselected package libtool. 270s Preparing to unpack .../052-libtool_2.5.4-3build1_all.deb ... 270s Unpacking libtool (2.5.4-3build1) ... 270s Selecting previously unselected package dh-autoreconf. 270s Preparing to unpack .../053-dh-autoreconf_20_all.deb ... 270s Unpacking dh-autoreconf (20) ... 270s Selecting previously unselected package libarchive-zip-perl. 270s Preparing to unpack .../054-libarchive-zip-perl_1.68-1_all.deb ... 270s Unpacking libarchive-zip-perl (1.68-1) ... 270s Selecting previously unselected package libfile-stripnondeterminism-perl. 270s Preparing to unpack .../055-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... 270s Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... 270s Selecting previously unselected package dh-strip-nondeterminism. 270s Preparing to unpack .../056-dh-strip-nondeterminism_1.14.1-2_all.deb ... 270s Unpacking dh-strip-nondeterminism (1.14.1-2) ... 270s Selecting previously unselected package debugedit. 270s Preparing to unpack .../057-debugedit_1%3a5.1-2_arm64.deb ... 270s Unpacking debugedit (1:5.1-2) ... 270s Selecting previously unselected package dwz. 271s Preparing to unpack .../058-dwz_0.15-1build6_arm64.deb ... 271s Unpacking dwz (0.15-1build6) ... 271s Selecting previously unselected package gettext. 271s Preparing to unpack .../059-gettext_0.23.1-1_arm64.deb ... 271s Unpacking gettext (0.23.1-1) ... 271s Selecting previously unselected package intltool-debian. 271s Preparing to unpack .../060-intltool-debian_0.35.0+20060710.6_all.deb ... 271s Unpacking intltool-debian (0.35.0+20060710.6) ... 271s Selecting previously unselected package po-debconf. 271s Preparing to unpack .../061-po-debconf_1.0.21+nmu1_all.deb ... 271s Unpacking po-debconf (1.0.21+nmu1) ... 271s Selecting previously unselected package debhelper. 271s Preparing to unpack .../062-debhelper_13.24.1ubuntu2_all.deb ... 271s Unpacking debhelper (13.24.1ubuntu2) ... 271s Selecting previously unselected package dh-python. 271s Preparing to unpack .../063-dh-python_6.20250108_all.deb ... 271s Unpacking dh-python (6.20250108) ... 271s Selecting previously unselected package xml-core. 271s Preparing to unpack .../064-xml-core_0.19_all.deb ... 271s Unpacking xml-core (0.19) ... 271s Selecting previously unselected package docutils-common. 271s Preparing to unpack .../065-docutils-common_0.21.2+dfsg-2_all.deb ... 271s Unpacking docutils-common (0.21.2+dfsg-2) ... 271s Selecting previously unselected package fonts-font-awesome. 271s Preparing to unpack .../066-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 271s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 271s Selecting previously unselected package fonts-lyx. 272s Preparing to unpack .../067-fonts-lyx_2.4.3-1_all.deb ... 272s Unpacking fonts-lyx (2.4.3-1) ... 272s Selecting previously unselected package fonts-mathjax. 272s Preparing to unpack .../068-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 272s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 272s Selecting previously unselected package libaec0:arm64. 272s Preparing to unpack .../069-libaec0_1.1.3-1_arm64.deb ... 272s Unpacking libaec0:arm64 (1.1.3-1) ... 272s Selecting previously unselected package libblas3:arm64. 272s Preparing to unpack .../070-libblas3_3.12.1-2_arm64.deb ... 272s Unpacking libblas3:arm64 (3.12.1-2) ... 272s Selecting previously unselected package libpixman-1-0:arm64. 272s Preparing to unpack .../071-libpixman-1-0_0.44.0-3_arm64.deb ... 272s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 272s Selecting previously unselected package libxcb-render0:arm64. 272s Preparing to unpack .../072-libxcb-render0_1.17.0-2_arm64.deb ... 272s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 272s Selecting previously unselected package libxcb-shm0:arm64. 272s Preparing to unpack .../073-libxcb-shm0_1.17.0-2_arm64.deb ... 272s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 272s Selecting previously unselected package libcairo2:arm64. 273s Preparing to unpack .../074-libcairo2_1.18.2-2_arm64.deb ... 273s Unpacking libcairo2:arm64 (1.18.2-2) ... 273s Selecting previously unselected package libdeflate0:arm64. 273s Preparing to unpack .../075-libdeflate0_1.23-1_arm64.deb ... 273s Unpacking libdeflate0:arm64 (1.23-1) ... 273s Selecting previously unselected package libexpat1-dev:arm64. 273s Preparing to unpack .../076-libexpat1-dev_2.6.4-1_arm64.deb ... 273s Unpacking libexpat1-dev:arm64 (2.6.4-1) ... 273s Selecting previously unselected package libgfortran5:arm64. 273s Preparing to unpack .../077-libgfortran5_15-20250213-1ubuntu1_arm64.deb ... 273s Unpacking libgfortran5:arm64 (15-20250213-1ubuntu1) ... 273s Selecting previously unselected package libgraphite2-3:arm64. 273s Preparing to unpack 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274s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 274s Selecting previously unselected package libjpeg-turbo8:arm64. 274s Preparing to unpack .../084-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 274s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 274s Selecting previously unselected package libjpeg8:arm64. 274s Preparing to unpack .../085-libjpeg8_8c-2ubuntu11_arm64.deb ... 274s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 274s Selecting previously unselected package libjs-jquery. 274s Preparing to unpack .../086-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 274s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 274s Selecting previously unselected package libjs-jquery-ui. 274s Preparing to unpack .../087-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 274s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 275s Selecting previously unselected package libjs-underscore. 275s Preparing to unpack .../088-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 275s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 275s Selecting previously unselected package libjs-sphinxdoc. 275s Preparing to unpack .../089-libjs-sphinxdoc_8.1.3-5_all.deb ... 275s Unpacking libjs-sphinxdoc (8.1.3-5) ... 275s Selecting previously unselected package libjson-perl. 275s Preparing to unpack .../090-libjson-perl_4.10000-1_all.deb ... 275s Unpacking libjson-perl (4.10000-1) ... 275s Selecting previously unselected package liblapack3:arm64. 275s Preparing to unpack .../091-liblapack3_3.12.1-2_arm64.deb ... 275s Unpacking liblapack3:arm64 (3.12.1-2) ... 275s Selecting previously unselected package liblbfgsb0:arm64. 275s Preparing to unpack .../092-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 275s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 276s Selecting previously unselected package liblcms2-2:arm64. 276s Preparing to unpack .../093-liblcms2-2_2.16-2_arm64.deb ... 276s Unpacking liblcms2-2:arm64 (2.16-2) ... 276s Selecting previously unselected package liblerc4:arm64. 276s Preparing to unpack .../094-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 276s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 276s Selecting previously unselected package liblzf1:arm64. 276s Preparing to unpack .../095-liblzf1_3.6-4_arm64.deb ... 276s Unpacking liblzf1:arm64 (3.6-4) ... 276s Selecting previously unselected package libnetcdf22:arm64. 276s Preparing to unpack .../096-libnetcdf22_1%3a4.9.3-1_arm64.deb ... 276s Unpacking libnetcdf22:arm64 (1:4.9.3-1) ... 276s Selecting previously unselected package zlib1g-dev:arm64. 276s Preparing to unpack .../097-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 276s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 276s Selecting previously unselected package libpython3.13-dev:arm64. 276s Preparing to unpack .../098-libpython3.13-dev_3.13.2-1_arm64.deb ... 276s Unpacking libpython3.13-dev:arm64 (3.13.2-1) ... 277s Selecting previously unselected package libpython3-dev:arm64. 277s Preparing to unpack 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.../104-libsharpyuv0_1.5.0-0.1_arm64.deb ... 278s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 278s Selecting previously unselected package libjbig0:arm64. 278s Preparing to unpack .../105-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 278s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 278s Selecting previously unselected package libwebp7:arm64. 278s Preparing to unpack .../106-libwebp7_1.5.0-0.1_arm64.deb ... 278s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 278s Selecting previously unselected package libtiff6:arm64. 278s Preparing to unpack .../107-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 278s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 278s Selecting previously unselected package libwebpdemux2:arm64. 278s Preparing to unpack .../108-libwebpdemux2_1.5.0-0.1_arm64.deb ... 278s Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... 278s Selecting previously unselected package libwebpmux3:arm64. 278s Preparing to unpack .../109-libwebpmux3_1.5.0-0.1_arm64.deb ... 278s Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... 278s Selecting previously unselected package libxslt1.1:arm64. 278s Preparing to unpack .../110-libxslt1.1_1.1.39-0exp1ubuntu2_arm64.deb ... 278s Unpacking libxslt1.1:arm64 (1.1.39-0exp1ubuntu2) ... 278s Selecting previously unselected package python3-packaging. 278s Preparing to unpack .../111-python3-packaging_24.2-1_all.deb ... 278s Unpacking python3-packaging (24.2-1) ... 278s Selecting previously unselected package python3-pyproject-hooks. 278s Preparing to unpack .../112-python3-pyproject-hooks_1.2.0-1_all.deb ... 278s Unpacking python3-pyproject-hooks (1.2.0-1) ... 279s Selecting previously unselected package python3-toml. 279s Preparing to unpack .../113-python3-toml_0.10.2-1_all.deb ... 279s Unpacking python3-toml (0.10.2-1) ... 279s Selecting previously unselected package python3-wheel. 279s Preparing to unpack .../114-python3-wheel_0.45.1-1_all.deb ... 279s Unpacking python3-wheel (0.45.1-1) ... 279s Selecting previously unselected package python3-build. 279s Preparing to unpack .../115-python3-build_1.2.2-1_all.deb ... 279s Unpacking python3-build (1.2.2-1) ... 279s Selecting previously unselected package python3-installer. 279s Preparing to unpack .../116-python3-installer_0.7.0+dfsg1-3_all.deb ... 279s Unpacking python3-installer (0.7.0+dfsg1-3) ... 279s Selecting previously unselected package pybuild-plugin-pyproject. 279s Preparing to unpack .../117-pybuild-plugin-pyproject_6.20250108_all.deb ... 279s Unpacking pybuild-plugin-pyproject (6.20250108) ... 279s Selecting previously unselected package python-matplotlib-data. 279s Preparing to unpack .../118-python-matplotlib-data_3.8.3-3ubuntu2_all.deb ... 279s Unpacking python-matplotlib-data (3.8.3-3ubuntu2) ... 279s Selecting previously unselected package libjs-mathjax. 279s Preparing to unpack .../119-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 279s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 280s Selecting previously unselected package python-mdanalysis-doc. 280s Preparing to unpack .../120-python-mdanalysis-doc_2.8.0-2_all.deb ... 280s Unpacking python-mdanalysis-doc (2.8.0-2) ... 280s Selecting previously unselected package python3-all. 281s Preparing to unpack .../121-python3-all_3.13.1-1~exp2_arm64.deb ... 281s Unpacking python3-all (3.13.1-1~exp2) ... 281s Selecting previously unselected package python3.13-dev. 281s Preparing to unpack .../122-python3.13-dev_3.13.2-1_arm64.deb ... 281s Unpacking python3.13-dev (3.13.2-1) ... 281s Selecting previously unselected package python3-dev. 281s Preparing to unpack .../123-python3-dev_3.13.1-1~exp2_arm64.deb ... 281s Unpacking python3-dev (3.13.1-1~exp2) ... 281s Selecting previously unselected package python3.12-dev. 281s Preparing to unpack .../124-python3.12-dev_3.12.9-1_arm64.deb ... 281s Unpacking python3.12-dev (3.12.9-1) ... 281s Selecting previously unselected package python3-all-dev. 281s Preparing to unpack .../125-python3-all-dev_3.13.1-1~exp2_arm64.deb ... 281s Unpacking python3-all-dev (3.13.1-1~exp2) ... 281s Selecting previously unselected package python3-numpy. 281s Preparing to unpack .../126-python3-numpy_1%3a1.26.4+ds-13_arm64.deb ... 281s Unpacking python3-numpy (1:1.26.4+ds-13) ... 281s Selecting previously unselected package python3.12-tk. 281s Preparing to unpack .../127-python3.12-tk_3.12.9-1_arm64.deb ... 281s Unpacking python3.12-tk (3.12.9-1) ... 282s Selecting previously unselected package python3.13-tk. 282s Preparing to unpack .../128-python3.13-tk_3.13.2-1_arm64.deb ... 282s Unpacking python3.13-tk (3.13.2-1) ... 282s Selecting previously unselected package python3-tk:arm64. 282s Preparing to unpack .../129-python3-tk_3.13.1-1_arm64.deb ... 282s Unpacking python3-tk:arm64 (3.13.1-1) ... 282s Selecting previously unselected package python3-pil.imagetk:arm64. 282s Preparing to unpack .../130-python3-pil.imagetk_11.1.0-5_arm64.deb ... 282s Unpacking python3-pil.imagetk:arm64 (11.1.0-5) ... 282s Selecting previously unselected package libopenjp2-7:arm64. 282s Preparing to unpack .../131-libopenjp2-7_2.5.0-2ubuntu3_arm64.deb ... 282s Unpacking libopenjp2-7:arm64 (2.5.0-2ubuntu3) ... 282s Selecting previously unselected package python3-pil:arm64. 282s Preparing to unpack .../132-python3-pil_11.1.0-5_arm64.deb ... 282s Unpacking python3-pil:arm64 (11.1.0-5) ... 282s Selecting previously unselected package python3-cairo. 282s Preparing to unpack .../133-python3-cairo_1.26.1-2build1_arm64.deb ... 282s Unpacking python3-cairo (1.26.1-2build1) ... 282s Selecting previously unselected package python3-freetype. 282s Preparing to unpack .../134-python3-freetype_2.5.1-1_all.deb ... 282s Unpacking python3-freetype (2.5.1-1) ... 282s Selecting previously unselected package python3-rlpycairo. 282s Preparing to unpack .../135-python3-rlpycairo_0.3.0-3_all.deb ... 282s Unpacking python3-rlpycairo (0.3.0-3) ... 282s Selecting previously unselected package python3-reportlab. 283s Preparing to unpack .../136-python3-reportlab_4.3.0-1_all.deb ... 283s Unpacking python3-reportlab (4.3.0-1) ... 283s Selecting previously unselected package w3c-sgml-lib. 283s Preparing to unpack .../137-w3c-sgml-lib_1.3-3_all.deb ... 283s Unpacking w3c-sgml-lib (1.3-3) ... 283s Selecting previously unselected package python3-biopython. 283s Preparing to unpack .../138-python3-biopython_1.85+dfsg-2_arm64.deb ... 283s Unpacking python3-biopython (1.85+dfsg-2) ... 283s Selecting previously unselected package python3-brotli. 283s Preparing to unpack .../139-python3-brotli_1.1.0-2build3_arm64.deb ... 283s Unpacking python3-brotli (1.1.0-2build3) ... 283s Selecting previously unselected package python3-cftime. 283s Preparing to unpack .../140-python3-cftime_1.6.4-1build2_arm64.deb ... 283s Unpacking python3-cftime (1.6.4-1build2) ... 283s Selecting previously unselected package python3-lxml:arm64. 284s Preparing to unpack .../141-python3-lxml_5.3.1-1_arm64.deb ... 284s Unpacking python3-lxml:arm64 (5.3.1-1) ... 284s Selecting previously unselected package python3-citeproc. 284s Preparing to unpack .../142-python3-citeproc_0.6.0-3_all.deb ... 284s Unpacking python3-citeproc (0.6.0-3) ... 284s Selecting previously unselected package python3-contourpy. 284s Preparing to unpack .../143-python3-contourpy_1.3.1-1_arm64.deb ... 284s Unpacking python3-contourpy (1.3.1-1) ... 284s Selecting previously unselected package python3-cycler. 284s Preparing to unpack .../144-python3-cycler_0.12.1-1_all.deb ... 284s Unpacking python3-cycler (0.12.1-1) ... 284s Selecting previously unselected package python3-dateutil. 284s Preparing to unpack .../145-python3-dateutil_2.9.0-3_all.deb ... 284s Unpacking python3-dateutil (2.9.0-3) ... 284s Selecting previously unselected package python3-decorator. 284s Preparing to unpack .../146-python3-decorator_5.1.1-5_all.deb ... 284s Unpacking python3-decorator (5.1.1-5) ... 284s Selecting previously unselected package python3-defusedxml. 284s Preparing to unpack .../147-python3-defusedxml_0.7.1-3_all.deb ... 284s Unpacking python3-defusedxml (0.7.1-3) ... 284s Selecting previously unselected package python3-roman. 284s Preparing to unpack .../148-python3-roman_5.0-1_all.deb ... 284s Unpacking python3-roman (5.0-1) ... 284s Selecting previously unselected package python3-docutils. 284s Preparing to unpack .../149-python3-docutils_0.21.2+dfsg-2_all.deb ... 284s Unpacking python3-docutils (0.21.2+dfsg-2) ... 285s Selecting previously unselected package python3-looseversion. 285s Preparing to unpack .../150-python3-looseversion_1.3.0-3_all.deb ... 285s Unpacking python3-looseversion (1.3.0-3) ... 285s Selecting previously unselected package python3-duecredit. 285s Preparing to unpack .../151-python3-duecredit_0.10.2-2_all.deb ... 285s Unpacking python3-duecredit (0.10.2-2) ... 285s Selecting previously unselected package python3-monotonic. 285s Preparing to unpack .../152-python3-monotonic_1.6-3_all.deb ... 285s Unpacking python3-monotonic (1.6-3) 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285s Unpacking python3-lz4 (4.4.0+dfsg-1) ... 285s Selecting previously unselected package python3-scipy. 285s Preparing to unpack .../159-python3-scipy_1.14.1-4ubuntu1_arm64.deb ... 285s Unpacking python3-scipy (1.14.1-4ubuntu1) ... 286s Selecting previously unselected package python3-mpmath. 286s Preparing to unpack .../160-python3-mpmath_1.3.0-1_all.deb ... 286s Unpacking python3-mpmath (1.3.0-1) ... 286s Selecting previously unselected package python3-sympy. 286s Preparing to unpack .../161-python3-sympy_1.13.3-1_all.deb ... 286s Unpacking python3-sympy (1.13.3-1) ... 287s Selecting previously unselected package python3-ufolib2. 287s Preparing to unpack .../162-python3-ufolib2_0.17.0+dfsg1-1_all.deb ... 287s Unpacking python3-ufolib2 (0.17.0+dfsg1-1) ... 287s Selecting previously unselected package python3-unicodedata2. 287s Preparing to unpack .../163-python3-unicodedata2_15.1.0+ds-1build2_arm64.deb ... 287s Unpacking python3-unicodedata2 (15.1.0+ds-1build2) ... 287s Selecting previously unselected package unicode-data. 287s Preparing to unpack .../164-unicode-data_15.1.0-1_all.deb ... 287s Unpacking unicode-data (15.1.0-1) ... 287s Selecting previously unselected package python3-fonttools. 287s Preparing to unpack .../165-python3-fonttools_4.55.3-2_arm64.deb ... 287s Unpacking python3-fonttools (4.55.3-2) ... 287s Selecting previously unselected package sphinx-rtd-theme-common. 287s Preparing to unpack .../166-sphinx-rtd-theme-common_3.0.2+dfsg-2_all.deb ... 287s Unpacking sphinx-rtd-theme-common (3.0.2+dfsg-2) ... 288s Selecting previously unselected package python3-mrcfile. 288s Preparing to unpack .../167-python3-mrcfile_1.5.4-2_all.deb ... 288s Unpacking python3-mrcfile (1.5.4-2) ... 288s Selecting previously unselected package python3-griddataformats. 288s Preparing to unpack .../168-python3-griddataformats_1.0.2-2_all.deb ... 288s Unpacking python3-griddataformats (1.0.2-2) ... 288s Selecting previously unselected package python3-gsd. 288s Preparing to unpack .../169-python3-gsd_3.3.0-1build2_arm64.deb ... 288s Unpacking python3-gsd (3.3.0-1build2) ... 288s Selecting previously unselected package python3-h5py-serial. 288s Preparing to unpack .../170-python3-h5py-serial_3.12.1-1_arm64.deb ... 288s Unpacking python3-h5py-serial (3.12.1-1) ... 288s Selecting previously unselected package python3-h5py. 288s Preparing to unpack .../171-python3-h5py_3.12.1-1_all.deb ... 288s Unpacking python3-h5py (3.12.1-1) ... 288s Selecting previously unselected package python3-sortedcontainers. 288s Preparing to unpack .../172-python3-sortedcontainers_2.4.0-2_all.deb ... 288s Unpacking python3-sortedcontainers (2.4.0-2) ... 288s Selecting previously unselected package python3-hypothesis. 288s Preparing to unpack .../173-python3-hypothesis_6.125.2-1_all.deb ... 288s Unpacking python3-hypothesis (6.125.2-1) ... 288s Selecting previously unselected package python3-imagesize. 288s Preparing to unpack .../174-python3-imagesize_1.4.1-1_all.deb ... 288s 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unselected package python3-mda-xdrlib. 289s Preparing to unpack .../180-python3-mda-xdrlib_0.2.0-3_all.deb ... 289s Unpacking python3-mda-xdrlib (0.2.0-3) ... 289s Selecting previously unselected package python3-msgpack. 289s Preparing to unpack .../181-python3-msgpack_1.0.3-3build3_arm64.deb ... 289s Unpacking python3-msgpack (1.0.3-3build3) ... 289s Selecting previously unselected package python3-mmtf. 289s Preparing to unpack .../182-python3-mmtf_1.1.3-1_all.deb ... 289s Unpacking python3-mmtf (1.1.3-1) ... 289s Selecting previously unselected package python3-threadpoolctl. 289s Preparing to unpack .../183-python3-threadpoolctl_3.1.0-1_all.deb ... 289s Unpacking python3-threadpoolctl (3.1.0-1) ... 290s Selecting previously unselected package python3-tqdm. 290s Preparing to unpack .../184-python3-tqdm_4.67.1-2_all.deb ... 290s Unpacking python3-tqdm (4.67.1-2) ... 290s Selecting previously unselected package python3-mdanalysis. 290s Preparing to unpack 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python3-pytest. 293s Preparing to unpack .../201-python3-pytest_8.3.4-1_all.deb ... 293s Unpacking python3-pytest (8.3.4-1) ... 293s Selecting previously unselected package python3-seaborn. 293s Preparing to unpack .../202-python3-seaborn_0.13.2-4.1_all.deb ... 293s Unpacking python3-seaborn (0.13.2-4.1) ... 293s Selecting previously unselected package python3-sklearn-lib:arm64. 293s Preparing to unpack .../203-python3-sklearn-lib_1.4.2+dfsg-7build1_arm64.deb ... 293s Unpacking python3-sklearn-lib:arm64 (1.4.2+dfsg-7build1) ... 294s Selecting previously unselected package python3-sklearn. 294s Preparing to unpack .../204-python3-sklearn_1.4.2+dfsg-7build1_all.deb ... 294s Unpacking python3-sklearn (1.4.2+dfsg-7build1) ... 294s Selecting previously unselected package python3-sphinx-sitemap. 294s Preparing to unpack .../205-python3-sphinx-sitemap_2.6.0-1_all.deb ... 294s Unpacking python3-sphinx-sitemap (2.6.0-1) ... 294s Selecting previously unselected package python3-sphinxcontrib.bibtex. 294s Preparing to unpack .../206-python3-sphinxcontrib.bibtex_2.6.2-1_all.deb ... 294s Unpacking python3-sphinxcontrib.bibtex (2.6.2-1) ... 294s Setting up dh-python (6.20250108) ... 295s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 295s Setting up liblcms2-2:arm64 (2.16-2) ... 295s Setting up python3-iniconfig (1.1.1-2) ... 295s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 295s Setting up python3.12-minimal (3.12.9-1) ... 297s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 297s Setting up fonts-lato (2.015-1) ... 297s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 297s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 297s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 297s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 297s Setting up python3-joblib (1.4.2-2) ... 298s Setting up python3-lz4 (4.4.0+dfsg-1) ... 298s Setting up libxcb-render0:arm64 (1.17.0-2) ... 298s Setting up python3-defusedxml (0.7.1-3) ... 298s Setting up libarchive-zip-perl 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[100%] 1439s 1439s = 19099 passed, 558 skipped, 2 deselected, 7 xfailed, 3 xpassed, 104647 warnings in 989.15s (0:16:29) = 1462s 1462s DueCredit Report: 1462s - Molecular simulation analysis library / MDAnalysis (v 2.8.0) [1, 2] 1462s - Iterative Calculation of Opimal Reference / MDAnalysis.analysis.align.iterative_average (v 2.8.0) [3] 1462s - Bond-Angle-Torsions Coordinate Transformation / MDAnalysis.analysis.bat.BAT (v 2.8.0) [4] 1462s - Dielectric analysis / MDAnalysis.analysis.dielectric (v 2.8.0) [5] 1462s - DSSP algorithm description / MDAnalysis.analysis.dssp (v 2.8.0) [6] 1462s - ENCORE Ensemble Comparison / MDAnalysis.analysis.encore (v 2.8.0) [7] 1462s - Hydrogen bond analysis implementation / MDAnalysis.analysis.hydrogenbonds.hbond_analysis (v 2.8.0) [8] 1462s - Hydrogen bonding autocorrelation time / MDAnalysis.analysis.hydrogenbonds.hbond_autocorrel (v 2.8.0) [9] 1462s - LeafletFinder algorithm / MDAnalysis.analysis.leaflet (v 2.8.0) [2] 1462s - Mean Squared Displacements with tidynamics, FCA fast correlation algorithm / MDAnalysis.analysis.msd (v 2.8.0) [10, 11] 1462s - Cumulative overlap / MDAnalysis.analysis.pca (v 2.8.0) [12] 1462s - Specifications of the H5MD standard, MDAnalysis trajectory reader/writer of the H5MDformat / MDAnalysis.coordinates.H5MD (v 2.8.0, 1.1) [13, 14] 1462s - MMTF Reader / MDAnalysis.coordinates.MMTF (v 2.8.0) [15] 1462s - The TNG paper / MDAnalysis.coordinates.TNG (v 2.8.0) [16] 1462s - QCProt implementation / MDAnalysis.lib.qcprot (v 2.8.0) [17, 18] 1462s - MMTF Parser / MDAnalysis.topology.MMTFParser (v 2.8.0) [15] 1462s - Works through the orthogonal case for unwrapping, and proposes the non-orthogonal approach. / MDAnalysis.transformations.nojump (v 2.8.0) [19] 1462s - Scientific tools library / numpy (v 1.26.4) [20] 1462s 1462s 2 packages cited 1462s 16 modules cited 1462s 0 functions cited 1462s 1462s References 1462s ---------- 1462s 1462s [1] Gowers, R. et al., 2016. MDAnalysis: A Python Package for the Rapid Analysis of Molecular Dynamics Simulations. In Proceedings of the 15th Python in Science Conference. SciPy. SciPy, pp. 98–105. 1462s [2] Michaud‐Agrawal, N. et al., 2011. MDAnalysis: A toolkit for the analysis of molecular dynamics simulations. Journal of Computational Chemistry, 32(10), pp.2319–2327. 1462s [3] Linke, M., Köfinger, J. & Hummer, G., 2018. Fully Anisotropic Rotational Diffusion Tensor from Molecular Dynamics Simulations. The Journal of Physical Chemistry B, 122(21), pp.5630–5639. 1462s [4] Minh, D.D.L., 2019. Alchemical Grid Dock (AlGDock): Binding Free Energy Calculations between Flexible Ligands and Rigid Receptors. Journal of Computational Chemistry, 41(7), pp.715–730. 1462s [5] Neumann, M., 1983. Dipole moment fluctuation formulas in computer simulations of polar systems. Molecular Physics, 50(4), pp.841–858. 1462s [6] Kabsch, W. & Sander, C., 1983. Dictionary of protein secondary structure: Pattern recognition of hydrogen‐bonded and geometrical features. Biopolymers, 22(12), pp.2577–2637. 1462s [7] Tiberti, M. et al., 2015. ENCORE: Software for Quantitative Ensemble Comparison B. L. de Groot, ed.. PLOS Computational Biology, 11(10), p.1004415. 1462s [8] Smith, P. et al., 2019. On the interaction of hyaluronic acid with synovial fluid lipid membranes. Physical Chemistry Chemical Physics, 21(19), pp.9845–9857. 1462s [9] Gowers, R.J. & Carbone, P., 2015. A multiscale approach to model hydrogen bonding: The case of polyamide. The Journal of Chemical Physics, 142(22). 1462s [10] de Buyl, P., 2018. tidynamics: A tiny package to compute the dynamics of stochastic and molecular simulations. Journal of Open Source Software, 3(28), p.877. 1462s [11] Calandrini, V. et al., 2011. nMoldyn - Interfacing spectroscopic experiments, molecular dynamics simulations and models for time correlation functions. École thématique de la Société Française de la Neutronique, 12, pp.201–232. 1462s [12] Yang, L. et al., 2008. Close Correspondence between the Motions from Principal Component Analysis of Multiple HIV-1 Protease Structures and Elastic Network Modes. Structure, 16(2), pp.321–330. 1462s [13] Jakupovic, E. & Beckstein, O., 2021. MPI-parallel Molecular Dynamics Trajectory Analysis with the H5MD Format in the MDAnalysis Python Package. In Proceedings of the 20th Python in Science Conference. SciPy. SciPy, pp. 40–48. 1462s [14] de Buyl, P., Colberg, P.H. & Höfling, F., 2014. H5MD: A structured, efficient, and portable file format for molecular data. Computer Physics Communications, 185(6), pp.1546–1553. 1462s [15] Bradley, A.R. et al., 2017. MMTF—An efficient file format for the transmission, visualization, and analysis of macromolecular structures D. Schneidman, ed.. PLOS Computational Biology, 13(6), p.1005575. 1462s [16] Lundborg, M. et al., 2013. An efficient and extensible format, library, and API for binary trajectory data from molecular simulations. Journal of Computational Chemistry, 35(3), pp.260–269. 1462s [17] Theobald, D.L., 2005. Rapid calculation of RMSDs using a quaternion-based characteristic polynomial. Acta Crystallographica Section A Foundations of Crystallography, 61(4), pp.478–480. 1462s [18] Liu, P., Agrafiotis, D.K. & Theobald, D.L., Fast determination of the optimal rotational matrix for macromolecular superpositions. Journal of Computational Chemistry, 31(7), pp.1561–1563. 1462s [19] Kulke, M. & Vermaas, J.V., 2022. Reversible Unwrapping Algorithm for Constant-Pressure Molecular Dynamics Simulations. Journal of Chemical Theory and Computation, 18(10), pp.6161–6171. 1462s [20] Van Der Walt, S., Colbert, S.C. & Varoquaux, G., 2011. The NumPy array: a structure for efficient numerical computation. Computing in Science & Engineering, 13(2), pp.22–30. 1478s ============================= test session starts ============================== 1478s platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 1478s rootdir: /tmp/autopkgtest.Orufrx/build.McD/src 1478s plugins: hypothesis-6.125.2, typeguard-4.4.1 1478s collected 19667 items / 2 deselected / 6 skipped / 19665 selected 1478s 1482s testsuite/MDAnalysisTests/analysis/test_align.py ....................... [ 0%] 1496s .....................s.ss.s........ [ 0%] 1497s testsuite/MDAnalysisTests/analysis/test_atomicdistances.py ... [ 0%] 1497s testsuite/MDAnalysisTests/analysis/test_backends.py .......... [ 0%] 1506s testsuite/MDAnalysisTests/analysis/test_base.py ........................ [ 0%] 1532s ....................................................................... [ 0%] 1536s testsuite/MDAnalysisTests/analysis/test_bat.py ................... [ 0%] 1538s testsuite/MDAnalysisTests/analysis/test_contacts.py .................... 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[100%] 2379s 2379s = 19103 passed, 558 skipped, 2 deselected, 7 xfailed, 3 xpassed, 104648 warnings in 911.25s (0:15:11) = 2380s 2380s DueCredit Report: 2380s - Molecular simulation analysis library / MDAnalysis (v 2.8.0) [1, 2] 2380s - Iterative Calculation of Opimal Reference / MDAnalysis.analysis.align.iterative_average (v 2.8.0) [3] 2380s - Bond-Angle-Torsions Coordinate Transformation / MDAnalysis.analysis.bat.BAT (v 2.8.0) [4] 2380s - Dielectric analysis / MDAnalysis.analysis.dielectric (v 2.8.0) [5] 2380s - DSSP algorithm description / MDAnalysis.analysis.dssp (v 2.8.0) [6] 2380s - ENCORE Ensemble Comparison / MDAnalysis.analysis.encore (v 2.8.0) [7] 2380s - Hydrogen bond analysis implementation / MDAnalysis.analysis.hydrogenbonds.hbond_analysis (v 2.8.0) [8] 2380s - Hydrogen bonding autocorrelation time / MDAnalysis.analysis.hydrogenbonds.hbond_autocorrel (v 2.8.0) [9] 2380s - LeafletFinder algorithm / MDAnalysis.analysis.leaflet (v 2.8.0) [2] 2380s - FCA fast correlation algorithm, Mean Squared Displacements with tidynamics / MDAnalysis.analysis.msd (v 2.8.0) [10, 11] 2380s - Cumulative overlap / MDAnalysis.analysis.pca (v 2.8.0) [12] 2380s - Specifications of the H5MD standard, MDAnalysis trajectory reader/writer of the H5MDformat / MDAnalysis.coordinates.H5MD (v 1.1, 2.8.0) [13, 14] 2380s - MMTF Reader / MDAnalysis.coordinates.MMTF (v 2.8.0) [15] 2380s - The TNG paper / MDAnalysis.coordinates.TNG (v 2.8.0) [16] 2380s - QCProt implementation / MDAnalysis.lib.qcprot (v 2.8.0) [17, 18] 2380s - MMTF Parser / MDAnalysis.topology.MMTFParser (v 2.8.0) [15] 2380s - Works through the orthogonal case for unwrapping, and proposes the non-orthogonal approach. / MDAnalysis.transformations.nojump (v 2.8.0) [19] 2380s - Scientific tools library / numpy (v 1.26.4) [20] 2380s 2380s 2 packages cited 2380s 16 modules cited 2380s 0 functions cited 2380s 2380s References 2380s ---------- 2380s 2380s [1] Gowers, R. et al., 2016. MDAnalysis: A Python Package for the Rapid Analysis of Molecular Dynamics Simulations. In Proceedings of the 15th Python in Science Conference. SciPy. SciPy, pp. 98–105. 2380s [2] Michaud‐Agrawal, N. et al., 2011. MDAnalysis: A toolkit for the analysis of molecular dynamics simulations. Journal of Computational Chemistry, 32(10), pp.2319–2327. 2380s [3] Linke, M., Köfinger, J. & Hummer, G., 2018. Fully Anisotropic Rotational Diffusion Tensor from Molecular Dynamics Simulations. The Journal of Physical Chemistry B, 122(21), pp.5630–5639. 2380s [4] Minh, D.D.L., 2019. Alchemical Grid Dock (AlGDock): Binding Free Energy Calculations between Flexible Ligands and Rigid Receptors. Journal of Computational Chemistry, 41(7), pp.715–730. 2380s [5] Neumann, M., 1983. Dipole moment fluctuation formulas in computer simulations of polar systems. Molecular Physics, 50(4), pp.841–858. 2380s [6] Kabsch, W. & Sander, C., 1983. Dictionary of protein secondary structure: Pattern recognition of hydrogen‐bonded and geometrical features. Biopolymers, 22(12), pp.2577–2637. 2380s [7] Tiberti, M. et al., 2015. ENCORE: Software for Quantitative Ensemble Comparison B. L. de Groot, ed.. PLOS Computational Biology, 11(10), p.1004415. 2380s [8] Smith, P. et al., 2019. On the interaction of hyaluronic acid with synovial fluid lipid membranes. Physical Chemistry Chemical Physics, 21(19), pp.9845–9857. 2380s [9] Gowers, R.J. & Carbone, P., 2015. A multiscale approach to model hydrogen bonding: The case of polyamide. The Journal of Chemical Physics, 142(22). 2380s [10] de Buyl, P., 2018. tidynamics: A tiny package to compute the dynamics of stochastic and molecular simulations. Journal of Open Source Software, 3(28), p.877. 2380s [11] Calandrini, V. et al., 2011. nMoldyn - Interfacing spectroscopic experiments, molecular dynamics simulations and models for time correlation functions. École thématique de la Société Française de la Neutronique, 12, pp.201–232. 2380s [12] Yang, L. et al., 2008. Close Correspondence between the Motions from Principal Component Analysis of Multiple HIV-1 Protease Structures and Elastic Network Modes. Structure, 16(2), pp.321–330. 2380s [13] Jakupovic, E. & Beckstein, O., 2021. MPI-parallel Molecular Dynamics Trajectory Analysis with the H5MD Format in the MDAnalysis Python Package. In Proceedings of the 20th Python in Science Conference. SciPy. SciPy, pp. 40–48. 2380s [14] de Buyl, P., Colberg, P.H. & Höfling, F., 2014. H5MD: A structured, efficient, and portable file format for molecular data. Computer Physics Communications, 185(6), pp.1546–1553. 2380s [15] Bradley, A.R. et al., 2017. MMTF—An efficient file format for the transmission, visualization, and analysis of macromolecular structures D. Schneidman, ed.. PLOS Computational Biology, 13(6), p.1005575. 2380s [16] Lundborg, M. et al., 2013. An efficient and extensible format, library, and API for binary trajectory data from molecular simulations. Journal of Computational Chemistry, 35(3), pp.260–269. 2380s [17] Theobald, D.L., 2005. Rapid calculation of RMSDs using a quaternion-based characteristic polynomial. Acta Crystallographica Section A Foundations of Crystallography, 61(4), pp.478–480. 2380s [18] Liu, P., Agrafiotis, D.K. & Theobald, D.L., Fast determination of the optimal rotational matrix for macromolecular superpositions. Journal of Computational Chemistry, 31(7), pp.1561–1563. 2380s [19] Kulke, M. & Vermaas, J.V., 2022. Reversible Unwrapping Algorithm for Constant-Pressure Molecular Dynamics Simulations. Journal of Chemical Theory and Computation, 18(10), pp.6161–6171. 2380s [20] Van Der Walt, S., Colbert, S.C. & Varoquaux, G., 2011. The NumPy array: a structure for efficient numerical computation. Computing in Science & Engineering, 13(2), pp.22–30. 2385s autopkgtest [12:39:03]: test test-mdanalysis: -----------------------] 2385s test-mdanalysis PASS 2385s autopkgtest [12:39:03]: test test-mdanalysis: - - - - - - - - - - results - - - - - - - - - - 2386s autopkgtest [12:39:04]: @@@@@@@@@@@@@@@@@@@@ summary 2386s test-mdanalysis PASS 2409s nova [W] Using flock in prodstack6-arm64 2409s flock: timeout while waiting to get lock 2409s Creating nova instance adt-plucky-arm64-mdanalysis-20250219-115918-juju-7f2275-prod-proposed-migration-environment-2-3eb5cbba-6f05-423f-8b6c-d41b41aae8c9 from image adt/ubuntu-plucky-arm64-server-20250219.img (UUID 02c92adb-9d9d-4b0e-b071-488d8ee6210f)... 2409s nova [W] Timed out waiting for 82212605-806f-46ed-966b-6827ec1a3a6c to get deleted.