0s autopkgtest [09:36:49]: starting date and time: 2024-11-13 09:36:49+0000 0s autopkgtest [09:36:49]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [09:36:49]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.b7hjjtfz/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade mdanalysis --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-45.secgroup --name adt-plucky-arm64-mdanalysis-20241113-093649-juju-7f2275-prod-proposed-migration-environment-20-a451556e-332d-40a0-b6e7-cffdd9d38e0a --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 68s autopkgtest [09:37:57]: testbed dpkg architecture: arm64 69s autopkgtest [09:37:58]: testbed apt version: 2.9.8 69s autopkgtest [09:37:58]: @@@@@@@@@@@@@@@@@@@@ test bed setup 69s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 70s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 70s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 70s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 70s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 70s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB] 70s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 70s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB] 70s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB] 70s Fetched 1793 kB in 1s (2116 kB/s) 70s Reading package lists... 73s Reading package lists... 74s Building dependency tree... 74s Reading state information... 75s Calculating upgrade... 76s The following NEW packages will be installed: 76s python3.13-gdbm 76s The following packages will be upgraded: 76s libpython3-stdlib python3 python3-gdbm python3-minimal 76s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 76s Need to get 101 kB of archives. 76s After this operation, 141 kB of additional disk space will be used. 76s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB] 76s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB] 76s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB] 76s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB] 76s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B] 77s Fetched 101 kB in 0s (280 kB/s) 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 77s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ... 77s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 77s Setting up python3-minimal (3.12.7-1) ... 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 78s Preparing to unpack .../python3_3.12.7-1_arm64.deb ... 78s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 78s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ... 78s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 78s Selecting previously unselected package python3.13-gdbm. 78s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ... 78s Unpacking python3.13-gdbm (3.13.0-2) ... 78s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ... 78s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 78s Setting up python3.13-gdbm (3.13.0-2) ... 78s Setting up libpython3-stdlib:arm64 (3.12.7-1) ... 78s Setting up python3 (3.12.7-1) ... 78s Setting up python3-gdbm:arm64 (3.12.7-1) ... 78s Processing triggers for man-db (2.12.1-3) ... 79s Reading package lists... 80s Building dependency tree... 80s Reading state information... 81s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 81s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 81s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 82s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 82s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 83s Reading package lists... 83s Reading package lists... 84s Building dependency tree... 84s Reading state information... 85s Calculating upgrade... 86s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 86s Reading package lists... 86s Building dependency tree... 86s Reading state information... 88s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 91s autopkgtest [09:38:20]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 91s autopkgtest [09:38:20]: @@@@@@@@@@@@@@@@@@@@ apt-source mdanalysis 96s Get:1 http://ftpmaster.internal/ubuntu plucky/universe mdanalysis 2.7.0-5 (dsc) [2889 B] 96s Get:2 http://ftpmaster.internal/ubuntu plucky/universe mdanalysis 2.7.0-5 (tar) [47.0 MB] 96s Get:3 http://ftpmaster.internal/ubuntu plucky/universe mdanalysis 2.7.0-5 (diff) [10.9 kB] 96s gpgv: Signature made Sat Aug 10 17:37:57 2024 UTC 96s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 96s gpgv: issuer "dparsons@debian.org" 96s gpgv: Can't check signature: No public key 96s dpkg-source: warning: cannot verify inline signature for ./mdanalysis_2.7.0-5.dsc: no acceptable signature found 98s autopkgtest [09:38:27]: testing package mdanalysis version 2.7.0-5 98s autopkgtest [09:38:27]: build not needed 105s autopkgtest [09:38:34]: test test-mdanalysis: preparing testbed 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 118s Starting pkgProblemResolver with broken count: 0 118s Starting 2 pkgProblemResolver with broken count: 0 118s Done 119s The following additional packages will be installed: 119s autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14 119s cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper debugedit 119s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz 119s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 119s fonts-lato fonts-lyx fonts-mathjax fonts-urw-base35 g++ g++-14 119s g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 119s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext intltool-debian 119s libaec0 libarchive-zip-perl libasan8 libblas3 libcairo2 libcc1-0 119s libdebhelper-perl libdeflate0 libexpat1-dev libfile-stripnondeterminism-perl 119s libfontconfig1 libfontenc1 libgcc-14-dev libgfortran5 libgomp1 119s libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libhwasan0 119s libimagequant0 libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 119s libjs-jquery libjs-jquery-ui libjs-mathjax libjs-sphinxdoc libjs-underscore 119s libjson-perl liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblsan0 liblzf1 119s libmpc3 libnetcdf19t64 libopenjp2-7 libpixman-1-0 libpython3-all-dev 119s libpython3-dev libpython3.12-dev libpython3.13 libpython3.13-dev 119s libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0 119s libsharpyuv0 libstdc++-14-dev libsz2 libtcl8.6 libtiff6 libtk8.6 libtool 119s libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 119s libxcb-shm0 libxft2 libxrender1 libxslt1.1 libxss1 m4 po-debconf 119s pybuild-plugin-pyproject python-matplotlib-data python-mdanalysis-doc 119s python3-alabaster python3-all python3-all-dev python3-appdirs 119s python3-biopython python3-brotli python3-build python3-cairo python3-cftime 119s python3-citeproc python3-contourpy python3-cycler python3-dateutil 119s python3-decorator python3-defusedxml python3-dev python3-docutils 119s python3-duecredit python3-fasteners python3-fonttools python3-freetype 119s python3-fs python3-griddataformats python3-gsd python3-h5py 119s python3-h5py-serial python3-hypothesis python3-imagesize python3-iniconfig 119s python3-installer python3-joblib python3-kiwisolver python3-latexcodec 119s python3-looseversion python3-lxml python3-lz4 python3-matplotlib 119s python3-mda-xdrlib python3-mdanalysis python3-mmtf python3-monotonic 119s python3-mpmath python3-mrcfile python3-msgpack python3-msmb-theme 119s python3-netcdf4 python3-networkx python3-numpy python3-packaging 119s python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk 119s python3-pluggy python3-pybtex python3-pybtex-docutils 119s python3-pyproject-hooks python3-pytest python3-reportlab python3-rlpycairo 119s python3-roman python3-scipy python3-seaborn python3-six python3-sklearn 119s python3-sklearn-lib python3-snowballstemmer python3-sortedcontainers 119s python3-sphinx python3-sphinx-rtd-theme python3-sphinx-sitemap 119s python3-sphinxcontrib.bibtex python3-sphinxcontrib.jquery python3-sympy 119s python3-threadpoolctl python3-tk python3-toml python3-tqdm python3-tz 119s python3-ufolib2 python3-unicodedata2 python3-wheel python3.12-dev 119s python3.12-tk python3.13 python3.13-dev python3.13-minimal python3.13-tk 119s sgml-base sphinx-common sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data 119s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev 119s Suggested packages: 119s autoconf-archive gnu-standards autoconf-doc blt-demo cpp-doc gcc-14-locales 119s cpp-14-doc cython-doc dh-make flit fonts-freefont-otf | fonts-freefont-ttf 119s fonts-texgyre gcc-14-doc gcc-multilib manpages-dev flex bison gdb gcc-doc 119s gdb-aarch64-linux-gnu gettext-doc libasprintf-dev libgettextpo-dev 119s libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc 119s liblcms2-utils libstdc++-14-doc tcl8.6 tk8.6 libtool-doc gfortran 119s | fortran95-compiler gcj-jdk m4-doc libmail-box-perl bwa clustalo clustalw 119s dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons 119s python3-mysqldb python3-rdflib python3-psycopg2 raxml samtools t-coffee wise 119s python3-pip python3-venv python-build-doc python-cycler-doc docutils-doc 119s fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french 119s texlive-latex-base texlive-latex-recommended python-gsd-doc python-h5py-doc 119s python-hypothesis-doc python-installer-doc python-joblib-doc 119s python-latexcodec-doc python-lxml-doc cm-super-minimal dvipng ffmpeg 119s fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common 119s python-matplotlib-doc python3-cairocffi python3-gi-cairo python3-gobject 119s python3-pyqt5 python3-sip python3-tornado texlive-extra-utils 119s texlive-latex-extra python-mpmath-doc python3-gmpy2 jupyter python3-gdal 119s python3-pydot python3-pygraphviz gfortran python-numpy-doc python-pandas-doc 119s python3-statsmodels python-pil-doc python-pybtex-doc 119s python-pybtex-docutils-doc pdf-viewer python3-egenix-mxtexttools 119s python-reportlab-doc rl-accel rl-renderpm python-scipy-doc python3-dap 119s python-sklearn-doc python3-stemmer python-sortedcontainers-doc dvisvgm 119s fonts-freefont-otf imagemagick-6.q16 latexmk sphinx-doc tex-gyre 119s texlive-fonts-extra texlive-fonts-recommended texlive-plain-generic 119s python-sphinxcontrib.bibtex-doc python-sympy-doc tix python3-tk-dbg 119s python3.13-venv python3.13-doc binfmt-support sgml-base-doc 119s Recommended packages: 119s libarchive-cpio-perl javascript-common libjson-xs-perl libltdl-dev 119s libmail-sendmail-perl python-biopython-doc ncbi-blast+ libpaper-utils 119s python3-click python3-simplejson python3-psutil python3-bs4 119s python3-cssselect python3-html5lib python3-bottleneck python3-numexpr 119s python3-odf python3-openpyxl python3-tables python3-olefile 119s fonts-dejavu-extra isympy-common 119s The following NEW packages will be installed: 119s autoconf automake autopkgtest-satdep autopoint autotools-dev blt 119s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 119s cython3 debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism 119s docutils-common dwz fontconfig-config fonts-dejavu-core fonts-dejavu-mono 119s fonts-font-awesome fonts-lato fonts-lyx fonts-mathjax fonts-urw-base35 g++ 119s g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 119s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext intltool-debian 119s libaec0 libarchive-zip-perl libasan8 libblas3 libcairo2 libcc1-0 119s libdebhelper-perl libdeflate0 libexpat1-dev libfile-stripnondeterminism-perl 119s libfontconfig1 libfontenc1 libgcc-14-dev libgfortran5 libgomp1 119s libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libhwasan0 119s libimagequant0 libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 119s libjs-jquery libjs-jquery-ui libjs-mathjax libjs-sphinxdoc libjs-underscore 119s libjson-perl liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblsan0 liblzf1 119s libmpc3 libnetcdf19t64 libopenjp2-7 libpixman-1-0 libpython3-all-dev 119s libpython3-dev libpython3.12-dev libpython3.13 libpython3.13-dev 119s libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0 119s libsharpyuv0 libstdc++-14-dev libsz2 libtcl8.6 libtiff6 libtk8.6 libtool 119s libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 119s libxcb-shm0 libxft2 libxrender1 libxslt1.1 libxss1 m4 po-debconf 119s pybuild-plugin-pyproject python-matplotlib-data python-mdanalysis-doc 119s python3-alabaster python3-all python3-all-dev python3-appdirs 119s python3-biopython python3-brotli python3-build python3-cairo python3-cftime 119s python3-citeproc python3-contourpy python3-cycler python3-dateutil 119s python3-decorator python3-defusedxml python3-dev python3-docutils 119s python3-duecredit python3-fasteners python3-fonttools python3-freetype 119s python3-fs python3-griddataformats python3-gsd python3-h5py 119s python3-h5py-serial python3-hypothesis python3-imagesize python3-iniconfig 119s python3-installer python3-joblib python3-kiwisolver python3-latexcodec 119s python3-looseversion python3-lxml python3-lz4 python3-matplotlib 119s python3-mda-xdrlib python3-mdanalysis python3-mmtf python3-monotonic 119s python3-mpmath python3-mrcfile python3-msgpack python3-msmb-theme 119s python3-netcdf4 python3-networkx python3-numpy python3-packaging 119s python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk 119s python3-pluggy python3-pybtex python3-pybtex-docutils 119s python3-pyproject-hooks python3-pytest python3-reportlab python3-rlpycairo 119s python3-roman python3-scipy python3-seaborn python3-six python3-sklearn 119s python3-sklearn-lib python3-snowballstemmer python3-sortedcontainers 119s python3-sphinx python3-sphinx-rtd-theme python3-sphinx-sitemap 119s python3-sphinxcontrib.bibtex python3-sphinxcontrib.jquery python3-sympy 119s python3-threadpoolctl python3-tk python3-toml python3-tqdm python3-tz 119s python3-ufolib2 python3-unicodedata2 python3-wheel python3.12-dev 119s python3.12-tk python3.13 python3.13-dev python3.13-minimal python3.13-tk 119s sgml-base sphinx-common sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data 119s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev 119s 0 upgraded, 210 newly installed, 0 to remove and 0 not upgraded. 119s Need to get 211 MB/211 MB of archives. 119s After this operation, 891 MB of additional disk space will be used. 119s Get:1 /tmp/autopkgtest.IL2Lz7/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [1012 B] 119s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-lato all 2.015-1 [2781 kB] 120s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB] 120s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.0-2 [2100 kB] 120s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 sgml-base all 1.31 [11.4 kB] 120s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 m4 arm64 1.4.19-4build1 [240 kB] 120s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 autoconf all 2.72-3 [382 kB] 120s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 autotools-dev all 20220109.1 [44.9 kB] 120s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 121s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 autopoint all 0.22.5-2 [616 kB] 121s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [987 kB] 121s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 121s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 121s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontenc1 arm64 1:1.1.8-1build1 [13.9 kB] 121s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 121s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 121s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 xfonts-utils arm64 1:7.7+7 [95.6 kB] 121s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-urw-base35 all 20200910-8 [11.0 MB] 121s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB] 121s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB] 121s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 121s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 121s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 121s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.15-1 [774 kB] 122s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7build1 [618 kB] 122s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 blt arm64 2.5.3+dfsg-7build1 [4840 B] 122s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 122s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 122s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [10.6 MB] 122s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-8ubuntu1 [1028 B] 122s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [5452 B] 122s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.1.0-2ubuntu1 [22.5 kB] 122s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 14.2.0-8ubuntu1 [49.7 kB] 122s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB] 122s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 14.2.0-8ubuntu1 [27.8 kB] 122s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 14.2.0-8ubuntu1 [2893 kB] 122s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 14.2.0-8ubuntu1 [1283 kB] 122s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 14.2.0-8ubuntu1 [2686 kB] 122s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 14.2.0-8ubuntu1 [1151 kB] 122s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 14.2.0-8ubuntu1 [1598 kB] 122s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-8ubuntu1 [2594 kB] 122s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [20.9 MB] 123s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-8ubuntu1 [518 kB] 123s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1200 B] 123s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.1.0-2ubuntu1 [4994 B] 123s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-8ubuntu1 [2476 kB] 123s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [12.1 MB] 123s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-8ubuntu1 [19.9 kB] 123s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [958 B] 123s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.1.0-2ubuntu1 [1080 B] 123s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 123s Get:52 http://ftpmaster.internal/ubuntu plucky/universe arm64 cython3 arm64 3.0.11+dfsg-1ubuntu1 [2355 kB] 123s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 123s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libtool all 2.4.7-7build1 [166 kB] 123s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-autoreconf all 20 [16.1 kB] 123s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] 123s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 124s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-strip-nondeterminism all 1.14.0-1 [5058 B] 124s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 debugedit arm64 1:5.1-1 [45.9 kB] 124s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 dwz arm64 0.15-1build6 [113 kB] 124s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 gettext arm64 0.22.5-2 [930 kB] 124s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 124s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] 124s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 debhelper all 13.20ubuntu1 [893 kB] 124s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 dh-python all 6.20241024 [112 kB] 124s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 xml-core all 0.19 [20.3 kB] 124s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 docutils-common all 0.21.2+dfsg-2 [131 kB] 124s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 124s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lyx all 2.4.2.1-1 [171 kB] 124s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 124s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 124s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 124s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 124s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 124s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 124s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 124s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.22-1 [46.2 kB] 124s Get:78 http://ftpmaster.internal/ubuntu plucky/main arm64 libexpat1-dev arm64 2.6.2-2 [128 kB] 124s Get:79 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB] 124s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 124s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.0.1-1 [487 kB] 124s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 124s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4ubuntu3 [1207 kB] 124s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4ubuntu3 [56.9 kB] 124s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 124s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu2 [163 kB] 124s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 124s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 124s Get:89 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 124s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 124s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 124s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 libjson-perl all 4.10000-1 [81.9 kB] 124s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 124s Get:94 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 124s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 124s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu2 [154 kB] 124s Get:97 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 124s Get:98 http://ftpmaster.internal/ubuntu plucky/universe arm64 libnetcdf19t64 arm64 1:4.9.2-6ubuntu1 [466 kB] 124s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 124s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.12-dev arm64 3.12.7-3 [5565 kB] 124s Get:101 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-dev arm64 3.12.7-1 [10.3 kB] 124s Get:102 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [2073 kB] 124s Get:103 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13 arm64 3.13.0-2 [2262 kB] 125s Get:104 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-dev arm64 3.13.0-2 [5386 kB] 125s Get:105 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-all-dev arm64 3.12.7-1 [916 B] 125s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 125s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 libraqm0 arm64 0.10.1-1build1 [14.7 kB] 125s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [16.3 kB] 125s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 125s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.4.0-0.1 [192 kB] 125s Get:111 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 125s Get:112 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [12.3 kB] 125s Get:113 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpmux3 arm64 1.4.0-0.1 [25.1 kB] 125s Get:114 http://ftpmaster.internal/ubuntu plucky/main arm64 libxslt1.1 arm64 1.1.39-0exp1ubuntu1 [167 kB] 125s Get:115 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.1-1 [41.4 kB] 125s Get:116 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 125s Get:117 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-toml all 0.10.2-1 [16.5 kB] 125s Get:118 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-wheel all 0.44.0-1 [54.2 kB] 125s Get:119 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-build all 1.2.2-1 [31.0 kB] 125s Get:120 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 125s Get:121 http://ftpmaster.internal/ubuntu plucky/universe arm64 pybuild-plugin-pyproject all 6.20241024 [1728 B] 125s Get:122 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-matplotlib-data all 3.8.3-3 [2928 kB] 125s Get:123 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 126s Get:124 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-mdanalysis-doc all 2.7.0-5 [2323 kB] 126s Get:125 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.0-2 [719 kB] 126s Get:126 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all arm64 3.12.7-1 [890 B] 126s Get:127 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-dev arm64 3.12.7-3 [505 kB] 126s Get:128 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-dev arm64 3.12.7-1 [26.7 kB] 126s Get:129 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-dev arm64 3.13.0-2 [507 kB] 126s Get:130 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all-dev arm64 3.12.7-1 [914 B] 126s Get:131 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-appdirs all 1.4.4-4 [10.9 kB] 126s Get:132 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB] 126s Get:133 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-tk arm64 3.12.7-3 [115 kB] 126s Get:134 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-tk arm64 3.13.0-2 [105 kB] 126s Get:135 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-tk arm64 3.12.7-1 [9752 B] 126s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pil.imagetk arm64 10.4.0-1ubuntu1 [9504 B] 126s Get:137 http://ftpmaster.internal/ubuntu plucky/main arm64 libopenjp2-7 arm64 2.5.0-2ubuntu1 [182 kB] 126s Get:138 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pil arm64 10.4.0-1ubuntu1 [456 kB] 126s Get:139 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-cairo arm64 1.26.1-2 [121 kB] 126s Get:140 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-freetype all 2.5.1-1 [92.3 kB] 126s Get:141 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-rlpycairo all 0.3.0-3 [9130 B] 126s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-reportlab all 4.2.5-1 [1107 kB] 126s Get:143 http://ftpmaster.internal/ubuntu plucky/universe arm64 w3c-sgml-lib all 1.3-3 [280 kB] 126s Get:144 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-biopython arm64 1.84+dfsg-4 [1689 kB] 126s Get:145 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-brotli arm64 1.1.0-2build2 [340 kB] 126s Get:146 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-cftime arm64 1.6.4-1 [195 kB] 126s Get:147 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-lxml arm64 5.3.0-1 [1205 kB] 126s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-citeproc all 0.6.0-3 [98.4 kB] 126s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-contourpy arm64 1.3.0-2 [179 kB] 126s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-cycler all 0.12.1-1 [9716 B] 126s Get:151 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-six all 1.16.0-7 [13.1 kB] 126s Get:152 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-2 [80.3 kB] 126s Get:153 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 126s Get:154 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-defusedxml all 0.7.1-2 [42.0 kB] 126s Get:155 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-roman all 4.2-1 [10.0 kB] 126s Get:156 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-docutils all 0.21.2+dfsg-2 [409 kB] 126s Get:157 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-looseversion all 1.3.0-3 [8354 B] 126s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-duecredit all 0.10.2-2 [66.0 kB] 126s Get:159 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-monotonic all 1.6-2 [5732 B] 126s Get:160 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-fasteners all 0.18-2 [12.5 kB] 126s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.13.1-5 [16.3 MB] 126s Get:162 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 126s Get:163 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mpmath all 1.3.0-1 [425 kB] 126s Get:164 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sympy all 1.13.3-1 [4228 kB] 127s Get:165 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tz all 2024.1-2 [31.4 kB] 127s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fs all 2.4.16-4 [91.3 kB] 127s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-lz4 arm64 4.0.2+dfsg-1build4 [26.7 kB] 127s Get:168 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-unicodedata2 arm64 15.1.0+ds-1build1 [362 kB] 127s Get:169 http://ftpmaster.internal/ubuntu plucky/universe arm64 unicode-data all 15.1.0-1 [8878 kB] 127s Get:170 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fonttools arm64 4.46.0-1build2 [1398 kB] 127s Get:171 http://ftpmaster.internal/ubuntu plucky/main arm64 sphinx-rtd-theme-common all 3.0.1+dfsg-1 [1012 kB] 127s Get:172 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mrcfile all 1.5.3-3 [114 kB] 127s Get:173 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-griddataformats all 1.0.2-2 [2107 kB] 127s Get:174 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-gsd arm64 3.3.0-1 [200 kB] 127s Get:175 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py-serial arm64 3.11.0-5ubuntu1 [1064 kB] 127s Get:176 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py all 3.11.0-5ubuntu1 [7974 B] 127s Get:177 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-sortedcontainers all 2.4.0-2 [27.6 kB] 127s Get:178 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-hypothesis all 6.116.0-1 [326 kB] 127s Get:179 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-imagesize all 1.4.1-1 [6844 B] 127s Get:180 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 127s Get:181 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-joblib all 1.3.2-5 [206 kB] 127s Get:182 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-kiwisolver arm64 1.4.7-2 [50.4 kB] 127s Get:183 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-latexcodec all 3.0.0-1 [16.6 kB] 127s Get:184 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-matplotlib arm64 3.8.3-3 [4515 kB] 127s Get:185 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mda-xdrlib all 0.2.0-3 [11.4 kB] 127s Get:186 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-msgpack arm64 1.0.3-3build2 [77.9 kB] 127s Get:187 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mmtf all 1.1.3-1 [16.2 kB] 127s Get:188 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 127s Get:189 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-tqdm all 4.67.0-1 [91.6 kB] 127s Get:190 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mdanalysis arm64 2.7.0-5 [2017 kB] 127s Get:191 http://ftpmaster.internal/ubuntu plucky/main arm64 sphinx-common all 7.4.7-4 [775 kB] 127s Get:192 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-alabaster all 0.7.16-0.1 [18.5 kB] 127s Get:193 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 127s Get:194 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-sphinx all 7.4.7-4 [593 kB] 127s Get:195 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sphinxcontrib.jquery all 4.1-5 [6678 B] 127s Get:196 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sphinx-rtd-theme all 3.0.1+dfsg-1 [23.5 kB] 127s Get:197 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-msmb-theme all 1.2.0-4 [35.4 kB] 127s Get:198 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-netcdf4 arm64 1.7.2-1 [567 kB] 127s Get:199 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 128s Get:200 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas-lib arm64 2.2.3+dfsg-5 [4422 kB] 128s Get:201 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas all 2.2.3+dfsg-5 [3112 kB] 128s Get:202 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 128s Get:203 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pybtex all 0.24.0-4 [70.0 kB] 128s Get:204 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pybtex-docutils all 1.0.2-1 [7176 B] 128s Get:205 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB] 128s Get:206 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-seaborn all 0.13.2-4 [225 kB] 128s Get:207 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sklearn-lib arm64 1.4.2+dfsg-6 [3806 kB] 129s Get:208 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sklearn all 1.4.2+dfsg-6 [2257 kB] 130s Get:209 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sphinx-sitemap all 2.6.0-1 [6674 B] 130s Get:210 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sphinxcontrib.bibtex all 2.6.2-1 [25.2 kB] 131s Fetched 211 MB in 11s (19.6 MB/s) 131s Selecting previously unselected package fonts-lato. 131s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79931 files and directories currently installed.) 131s Preparing to unpack .../000-fonts-lato_2.015-1_all.deb ... 131s Unpacking fonts-lato (2.015-1) ... 131s Selecting previously unselected package libpython3.13-minimal:arm64. 131s Preparing to unpack .../001-libpython3.13-minimal_3.13.0-2_arm64.deb ... 131s Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ... 131s Selecting previously unselected package python3.13-minimal. 131s Preparing to unpack .../002-python3.13-minimal_3.13.0-2_arm64.deb ... 131s Unpacking python3.13-minimal (3.13.0-2) ... 131s Selecting previously unselected package sgml-base. 131s Preparing to unpack .../003-sgml-base_1.31_all.deb ... 131s Unpacking sgml-base (1.31) ... 131s Selecting previously unselected package m4. 131s Preparing to unpack .../004-m4_1.4.19-4build1_arm64.deb ... 131s Unpacking m4 (1.4.19-4build1) ... 131s Selecting previously unselected package autoconf. 131s Preparing to unpack .../005-autoconf_2.72-3_all.deb ... 131s Unpacking autoconf (2.72-3) ... 131s Selecting previously unselected package autotools-dev. 131s Preparing to unpack .../006-autotools-dev_20220109.1_all.deb ... 131s Unpacking autotools-dev (20220109.1) ... 131s Selecting previously unselected package automake. 131s Preparing to unpack .../007-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 131s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 131s Selecting previously unselected package autopoint. 131s Preparing to unpack .../008-autopoint_0.22.5-2_all.deb ... 131s Unpacking autopoint (0.22.5-2) ... 131s Selecting previously unselected package libtcl8.6:arm64. 131s Preparing to unpack .../009-libtcl8.6_8.6.15+dfsg-2_arm64.deb ... 131s Unpacking libtcl8.6:arm64 (8.6.15+dfsg-2) ... 131s Selecting previously unselected package fonts-dejavu-mono. 131s Preparing to unpack .../010-fonts-dejavu-mono_2.37-8_all.deb ... 131s Unpacking fonts-dejavu-mono (2.37-8) ... 132s Selecting previously unselected package fonts-dejavu-core. 132s Preparing to unpack .../011-fonts-dejavu-core_2.37-8_all.deb ... 132s Unpacking fonts-dejavu-core (2.37-8) ... 132s Selecting previously unselected package libfontenc1:arm64. 132s Preparing to unpack .../012-libfontenc1_1%3a1.1.8-1build1_arm64.deb ... 132s Unpacking libfontenc1:arm64 (1:1.1.8-1build1) ... 132s Selecting previously unselected package x11-common. 132s Preparing to unpack .../013-x11-common_1%3a7.7+23ubuntu3_all.deb ... 132s Unpacking x11-common (1:7.7+23ubuntu3) ... 132s Selecting previously unselected package xfonts-encodings. 132s Preparing to unpack .../014-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 132s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 132s Selecting previously unselected package xfonts-utils. 132s Preparing to unpack .../015-xfonts-utils_1%3a7.7+7_arm64.deb ... 132s Unpacking xfonts-utils (1:7.7+7) ... 132s Selecting previously unselected package fonts-urw-base35. 132s Preparing to unpack .../016-fonts-urw-base35_20200910-8_all.deb ... 132s Unpacking fonts-urw-base35 (20200910-8) ... 132s Selecting previously unselected package fontconfig-config. 132s Preparing to unpack .../017-fontconfig-config_2.15.0-1.1ubuntu2_arm64.deb ... 132s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 132s Selecting previously unselected package libfontconfig1:arm64. 132s Preparing to unpack .../018-libfontconfig1_2.15.0-1.1ubuntu2_arm64.deb ... 132s Unpacking libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... 132s Selecting previously unselected package libxrender1:arm64. 132s Preparing to unpack .../019-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 132s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 132s Selecting previously unselected package libxft2:arm64. 132s Preparing to unpack .../020-libxft2_2.3.6-1build1_arm64.deb ... 132s Unpacking libxft2:arm64 (2.3.6-1build1) ... 132s Selecting previously unselected package libxss1:arm64. 133s Preparing to unpack .../021-libxss1_1%3a1.2.3-1build3_arm64.deb ... 133s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 133s Selecting previously unselected package libtk8.6:arm64. 133s Preparing to unpack .../022-libtk8.6_8.6.15-1_arm64.deb ... 133s Unpacking libtk8.6:arm64 (8.6.15-1) ... 133s Selecting previously unselected package tk8.6-blt2.5. 133s Preparing to unpack .../023-tk8.6-blt2.5_2.5.3+dfsg-7build1_arm64.deb ... 133s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 133s Selecting previously unselected package blt. 133s Preparing to unpack .../024-blt_2.5.3+dfsg-7build1_arm64.deb ... 133s Unpacking blt (2.5.3+dfsg-7build1) ... 133s Selecting previously unselected package libisl23:arm64. 133s Preparing to unpack .../025-libisl23_0.27-1_arm64.deb ... 133s Unpacking libisl23:arm64 (0.27-1) ... 133s Selecting previously unselected package libmpc3:arm64. 133s Preparing to unpack .../026-libmpc3_1.3.1-1build2_arm64.deb ... 133s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 133s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 133s Preparing to unpack .../027-cpp-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ... 133s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 133s Selecting previously unselected package cpp-14. 133s Preparing to unpack .../028-cpp-14_14.2.0-8ubuntu1_arm64.deb ... 133s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 133s Selecting previously unselected package cpp-aarch64-linux-gnu. 133s Preparing to unpack .../029-cpp-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 133s Unpacking cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 133s Selecting previously unselected package cpp. 133s Preparing to unpack .../030-cpp_4%3a14.1.0-2ubuntu1_arm64.deb ... 133s Unpacking cpp (4:14.1.0-2ubuntu1) ... 133s Selecting previously unselected package libcc1-0:arm64. 133s Preparing to unpack .../031-libcc1-0_14.2.0-8ubuntu1_arm64.deb ... 133s Unpacking libcc1-0:arm64 (14.2.0-8ubuntu1) ... 133s Selecting previously unselected package libgomp1:arm64. 133s Preparing to unpack .../032-libgomp1_14.2.0-8ubuntu1_arm64.deb ... 133s Unpacking libgomp1:arm64 (14.2.0-8ubuntu1) ... 133s Selecting previously unselected package libitm1:arm64. 133s Preparing to unpack .../033-libitm1_14.2.0-8ubuntu1_arm64.deb ... 133s Unpacking libitm1:arm64 (14.2.0-8ubuntu1) ... 133s Selecting previously unselected package libasan8:arm64. 133s Preparing to unpack .../034-libasan8_14.2.0-8ubuntu1_arm64.deb ... 133s Unpacking libasan8:arm64 (14.2.0-8ubuntu1) ... 133s Selecting previously unselected package liblsan0:arm64. 133s Preparing to unpack .../035-liblsan0_14.2.0-8ubuntu1_arm64.deb ... 133s Unpacking liblsan0:arm64 (14.2.0-8ubuntu1) ... 133s Selecting previously unselected package libtsan2:arm64. 133s Preparing to unpack .../036-libtsan2_14.2.0-8ubuntu1_arm64.deb ... 133s Unpacking libtsan2:arm64 (14.2.0-8ubuntu1) ... 134s Selecting previously unselected package libubsan1:arm64. 134s Preparing to unpack .../037-libubsan1_14.2.0-8ubuntu1_arm64.deb ... 134s Unpacking libubsan1:arm64 (14.2.0-8ubuntu1) ... 134s Selecting previously unselected package libhwasan0:arm64. 134s Preparing to unpack .../038-libhwasan0_14.2.0-8ubuntu1_arm64.deb ... 134s Unpacking libhwasan0:arm64 (14.2.0-8ubuntu1) ... 134s Selecting previously unselected package libgcc-14-dev:arm64. 134s Preparing to unpack .../039-libgcc-14-dev_14.2.0-8ubuntu1_arm64.deb ... 134s Unpacking libgcc-14-dev:arm64 (14.2.0-8ubuntu1) ... 134s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 134s Preparing to unpack .../040-gcc-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ... 134s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 134s Selecting previously unselected package gcc-14. 134s Preparing to unpack .../041-gcc-14_14.2.0-8ubuntu1_arm64.deb ... 134s Unpacking gcc-14 (14.2.0-8ubuntu1) ... 134s Selecting previously unselected package gcc-aarch64-linux-gnu. 134s Preparing to unpack .../042-gcc-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 134s Unpacking gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 134s Selecting previously unselected package gcc. 134s Preparing to unpack .../043-gcc_4%3a14.1.0-2ubuntu1_arm64.deb ... 134s Unpacking gcc (4:14.1.0-2ubuntu1) ... 134s Selecting previously unselected package libstdc++-14-dev:arm64. 134s Preparing to unpack .../044-libstdc++-14-dev_14.2.0-8ubuntu1_arm64.deb ... 134s Unpacking libstdc++-14-dev:arm64 (14.2.0-8ubuntu1) ... 135s Selecting previously unselected package g++-14-aarch64-linux-gnu. 135s Preparing to unpack .../045-g++-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ... 135s Unpacking g++-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 135s Selecting previously unselected package g++-14. 135s Preparing to unpack .../046-g++-14_14.2.0-8ubuntu1_arm64.deb ... 135s Unpacking g++-14 (14.2.0-8ubuntu1) ... 135s Selecting previously unselected package g++-aarch64-linux-gnu. 135s Preparing to unpack .../047-g++-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 135s Unpacking g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 135s Selecting previously unselected package g++. 135s Preparing to unpack .../048-g++_4%3a14.1.0-2ubuntu1_arm64.deb ... 135s Unpacking g++ (4:14.1.0-2ubuntu1) ... 135s Selecting previously unselected package build-essential. 135s Preparing to unpack .../049-build-essential_12.10ubuntu1_arm64.deb ... 135s Unpacking build-essential (12.10ubuntu1) ... 135s Selecting previously unselected package cython3. 135s Preparing to unpack .../050-cython3_3.0.11+dfsg-1ubuntu1_arm64.deb ... 135s Unpacking cython3 (3.0.11+dfsg-1ubuntu1) ... 135s Selecting previously unselected package libdebhelper-perl. 135s Preparing to unpack .../051-libdebhelper-perl_13.20ubuntu1_all.deb ... 135s Unpacking libdebhelper-perl (13.20ubuntu1) ... 135s Selecting previously unselected package libtool. 135s Preparing to unpack .../052-libtool_2.4.7-7build1_all.deb ... 135s Unpacking libtool (2.4.7-7build1) ... 135s Selecting previously unselected package dh-autoreconf. 135s Preparing to unpack .../053-dh-autoreconf_20_all.deb ... 135s Unpacking dh-autoreconf (20) ... 135s Selecting previously unselected package libarchive-zip-perl. 135s Preparing to unpack .../054-libarchive-zip-perl_1.68-1_all.deb ... 135s Unpacking libarchive-zip-perl (1.68-1) ... 135s Selecting previously unselected package libfile-stripnondeterminism-perl. 135s Preparing to unpack .../055-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... 135s Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... 135s Selecting previously unselected package dh-strip-nondeterminism. 135s Preparing to unpack .../056-dh-strip-nondeterminism_1.14.0-1_all.deb ... 135s Unpacking dh-strip-nondeterminism (1.14.0-1) ... 135s Selecting previously unselected package debugedit. 135s Preparing to unpack .../057-debugedit_1%3a5.1-1_arm64.deb ... 135s Unpacking debugedit (1:5.1-1) ... 136s Selecting previously unselected package dwz. 136s Preparing to unpack .../058-dwz_0.15-1build6_arm64.deb ... 136s Unpacking dwz (0.15-1build6) ... 136s Selecting previously unselected package gettext. 136s Preparing to unpack .../059-gettext_0.22.5-2_arm64.deb ... 136s Unpacking gettext (0.22.5-2) ... 136s Selecting previously unselected package intltool-debian. 136s Preparing to unpack .../060-intltool-debian_0.35.0+20060710.6_all.deb ... 136s Unpacking intltool-debian (0.35.0+20060710.6) ... 136s Selecting previously unselected package po-debconf. 136s Preparing to unpack .../061-po-debconf_1.0.21+nmu1_all.deb ... 136s Unpacking po-debconf (1.0.21+nmu1) ... 136s Selecting previously unselected package debhelper. 136s Preparing to unpack .../062-debhelper_13.20ubuntu1_all.deb ... 136s Unpacking debhelper (13.20ubuntu1) ... 136s Selecting previously unselected package dh-python. 136s Preparing to unpack .../063-dh-python_6.20241024_all.deb ... 136s Unpacking dh-python (6.20241024) ... 136s Selecting previously unselected package xml-core. 136s Preparing to unpack .../064-xml-core_0.19_all.deb ... 136s Unpacking xml-core (0.19) ... 136s Selecting previously unselected package docutils-common. 136s Preparing to unpack .../065-docutils-common_0.21.2+dfsg-2_all.deb ... 136s Unpacking docutils-common (0.21.2+dfsg-2) ... 136s Selecting previously unselected package fonts-font-awesome. 136s Preparing to unpack .../066-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 136s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 136s Selecting previously unselected package fonts-lyx. 136s Preparing to unpack .../067-fonts-lyx_2.4.2.1-1_all.deb ... 136s Unpacking fonts-lyx (2.4.2.1-1) ... 136s Selecting previously unselected package fonts-mathjax. 136s Preparing to unpack .../068-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 136s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 136s Selecting previously unselected package libaec0:arm64. 136s Preparing to unpack .../069-libaec0_1.1.3-1_arm64.deb ... 136s Unpacking libaec0:arm64 (1.1.3-1) ... 136s Selecting previously unselected package libblas3:arm64. 136s Preparing to unpack .../070-libblas3_3.12.0-3build2_arm64.deb ... 136s Unpacking libblas3:arm64 (3.12.0-3build2) ... 136s Selecting previously unselected package libpixman-1-0:arm64. 136s Preparing to unpack .../071-libpixman-1-0_0.44.0-3_arm64.deb ... 136s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 136s Selecting previously unselected package libxcb-render0:arm64. 136s Preparing to unpack .../072-libxcb-render0_1.17.0-2_arm64.deb ... 136s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 136s Selecting previously unselected package libxcb-shm0:arm64. 136s Preparing to unpack .../073-libxcb-shm0_1.17.0-2_arm64.deb ... 136s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 136s Selecting previously unselected package libcairo2:arm64. 136s Preparing to unpack .../074-libcairo2_1.18.2-2_arm64.deb ... 136s Unpacking libcairo2:arm64 (1.18.2-2) ... 137s Selecting previously unselected package libdeflate0:arm64. 137s Preparing to unpack .../075-libdeflate0_1.22-1_arm64.deb ... 137s Unpacking libdeflate0:arm64 (1.22-1) ... 137s Selecting previously unselected package libexpat1-dev:arm64. 137s Preparing to unpack .../076-libexpat1-dev_2.6.2-2_arm64.deb ... 137s Unpacking libexpat1-dev:arm64 (2.6.2-2) ... 137s Selecting previously unselected package libgfortran5:arm64. 137s Preparing to unpack .../077-libgfortran5_14.2.0-8ubuntu1_arm64.deb ... 137s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ... 137s Selecting previously unselected package libgraphite2-3:arm64. 137s Preparing to unpack .../078-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 137s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 137s Selecting previously unselected package libharfbuzz0b:arm64. 137s Preparing to unpack .../079-libharfbuzz0b_10.0.1-1_arm64.deb ... 137s Unpacking libharfbuzz0b:arm64 (10.0.1-1) ... 137s Selecting previously unselected package libsz2:arm64. 137s Preparing to unpack .../080-libsz2_1.1.3-1_arm64.deb ... 137s Unpacking libsz2:arm64 (1.1.3-1) ... 137s Selecting previously unselected package libhdf5-103-1t64:arm64. 137s Preparing to unpack .../081-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_arm64.deb ... 137s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 137s Selecting previously unselected package libhdf5-hl-100t64:arm64. 137s Preparing to unpack .../082-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_arm64.deb ... 137s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 137s Selecting previously unselected package libimagequant0:arm64. 137s Preparing to unpack .../083-libimagequant0_2.18.0-1build1_arm64.deb ... 137s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 137s Selecting previously unselected package libjpeg-turbo8:arm64. 137s Preparing to unpack .../084-libjpeg-turbo8_2.1.5-2ubuntu2_arm64.deb ... 137s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ... 137s Selecting previously unselected package libjpeg8:arm64. 137s Preparing to unpack .../085-libjpeg8_8c-2ubuntu11_arm64.deb ... 137s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 137s Selecting previously unselected package libjs-jquery. 137s Preparing to unpack .../086-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 137s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 137s Selecting previously unselected package libjs-jquery-ui. 137s Preparing to unpack .../087-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 137s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 137s Selecting previously unselected package libjs-underscore. 137s Preparing to unpack .../088-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 137s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 137s Selecting previously unselected package libjs-sphinxdoc. 137s Preparing to unpack .../089-libjs-sphinxdoc_7.4.7-4_all.deb ... 137s Unpacking libjs-sphinxdoc (7.4.7-4) ... 137s Selecting previously unselected package libjson-perl. 137s Preparing to unpack .../090-libjson-perl_4.10000-1_all.deb ... 137s Unpacking libjson-perl (4.10000-1) ... 137s Selecting previously unselected package liblapack3:arm64. 137s Preparing to unpack .../091-liblapack3_3.12.0-3build2_arm64.deb ... 137s Unpacking liblapack3:arm64 (3.12.0-3build2) ... 137s Selecting previously unselected package liblbfgsb0:arm64. 137s Preparing to unpack .../092-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 137s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 137s Selecting previously unselected package liblcms2-2:arm64. 137s Preparing to unpack .../093-liblcms2-2_2.16-2_arm64.deb ... 137s Unpacking liblcms2-2:arm64 (2.16-2) ... 137s Selecting previously unselected package liblerc4:arm64. 137s Preparing to unpack .../094-liblerc4_4.0.0+ds-4ubuntu2_arm64.deb ... 137s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu2) ... 137s Selecting previously unselected package liblzf1:arm64. 138s Preparing to unpack .../095-liblzf1_3.6-4_arm64.deb ... 138s Unpacking liblzf1:arm64 (3.6-4) ... 138s Selecting previously unselected package libnetcdf19t64:arm64. 138s Preparing to unpack .../096-libnetcdf19t64_1%3a4.9.2-6ubuntu1_arm64.deb ... 138s Unpacking libnetcdf19t64:arm64 (1:4.9.2-6ubuntu1) ... 138s Selecting previously unselected package zlib1g-dev:arm64. 138s Preparing to unpack .../097-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 138s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 138s Selecting previously unselected package libpython3.12-dev:arm64. 138s Preparing to unpack .../098-libpython3.12-dev_3.12.7-3_arm64.deb ... 138s Unpacking libpython3.12-dev:arm64 (3.12.7-3) ... 138s Selecting previously unselected package libpython3-dev:arm64. 138s Preparing to unpack .../099-libpython3-dev_3.12.7-1_arm64.deb ... 138s Unpacking libpython3-dev:arm64 (3.12.7-1) ... 138s Selecting previously unselected package libpython3.13-stdlib:arm64. 138s Preparing to unpack .../100-libpython3.13-stdlib_3.13.0-2_arm64.deb ... 138s Unpacking libpython3.13-stdlib:arm64 (3.13.0-2) ... 138s Selecting previously unselected package libpython3.13:arm64. 138s Preparing to unpack .../101-libpython3.13_3.13.0-2_arm64.deb ... 138s Unpacking libpython3.13:arm64 (3.13.0-2) ... 138s Selecting previously unselected package libpython3.13-dev:arm64. 138s Preparing to unpack .../102-libpython3.13-dev_3.13.0-2_arm64.deb ... 138s Unpacking libpython3.13-dev:arm64 (3.13.0-2) ... 138s Selecting previously unselected package libpython3-all-dev:arm64. 138s Preparing to unpack .../103-libpython3-all-dev_3.12.7-1_arm64.deb ... 138s Unpacking libpython3-all-dev:arm64 (3.12.7-1) ... 138s Selecting previously unselected package libqhull-r8.0:arm64. 138s Preparing to unpack .../104-libqhull-r8.0_2020.2-6build1_arm64.deb ... 138s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ... 138s Selecting previously unselected package libraqm0:arm64. 138s Preparing to unpack .../105-libraqm0_0.10.1-1build1_arm64.deb ... 138s Unpacking libraqm0:arm64 (0.10.1-1build1) ... 138s Selecting previously unselected package libsharpyuv0:arm64. 138s Preparing to unpack .../106-libsharpyuv0_1.4.0-0.1_arm64.deb ... 138s Unpacking libsharpyuv0:arm64 (1.4.0-0.1) ... 139s Selecting previously unselected package libjbig0:arm64. 139s Preparing to unpack .../107-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 139s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 139s Selecting previously unselected package libwebp7:arm64. 139s Preparing to unpack .../108-libwebp7_1.4.0-0.1_arm64.deb ... 139s Unpacking libwebp7:arm64 (1.4.0-0.1) ... 139s Selecting previously unselected package libtiff6:arm64. 139s Preparing to unpack .../109-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 139s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 139s Selecting previously unselected package libwebpdemux2:arm64. 139s Preparing to unpack .../110-libwebpdemux2_1.4.0-0.1_arm64.deb ... 139s Unpacking libwebpdemux2:arm64 (1.4.0-0.1) ... 139s Selecting previously unselected package libwebpmux3:arm64. 139s Preparing to unpack .../111-libwebpmux3_1.4.0-0.1_arm64.deb ... 139s Unpacking libwebpmux3:arm64 (1.4.0-0.1) ... 139s Selecting previously unselected package libxslt1.1:arm64. 139s Preparing to unpack .../112-libxslt1.1_1.1.39-0exp1ubuntu1_arm64.deb ... 139s Unpacking libxslt1.1:arm64 (1.1.39-0exp1ubuntu1) ... 139s Selecting previously unselected package python3-packaging. 139s Preparing to unpack .../113-python3-packaging_24.1-1_all.deb ... 139s Unpacking python3-packaging (24.1-1) ... 139s Selecting previously unselected package python3-pyproject-hooks. 139s Preparing to unpack .../114-python3-pyproject-hooks_1.2.0-1_all.deb ... 139s Unpacking python3-pyproject-hooks (1.2.0-1) ... 139s Selecting previously unselected package python3-toml. 139s Preparing to unpack .../115-python3-toml_0.10.2-1_all.deb ... 139s Unpacking python3-toml (0.10.2-1) ... 139s Selecting previously unselected package python3-wheel. 139s Preparing to unpack .../116-python3-wheel_0.44.0-1_all.deb ... 139s Unpacking python3-wheel (0.44.0-1) ... 139s Selecting previously unselected package python3-build. 139s Preparing to unpack .../117-python3-build_1.2.2-1_all.deb ... 139s Unpacking python3-build (1.2.2-1) ... 139s Selecting previously unselected package python3-installer. 139s Preparing to unpack .../118-python3-installer_0.7.0+dfsg1-3_all.deb ... 139s Unpacking python3-installer (0.7.0+dfsg1-3) ... 139s Selecting previously unselected package pybuild-plugin-pyproject. 139s Preparing to unpack .../119-pybuild-plugin-pyproject_6.20241024_all.deb ... 139s Unpacking pybuild-plugin-pyproject (6.20241024) ... 139s Selecting previously unselected package python-matplotlib-data. 139s Preparing to unpack .../120-python-matplotlib-data_3.8.3-3_all.deb ... 139s Unpacking python-matplotlib-data (3.8.3-3) ... 139s Selecting previously unselected package libjs-mathjax. 139s Preparing to unpack .../121-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 139s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 140s Selecting previously unselected package python-mdanalysis-doc. 140s Preparing to unpack .../122-python-mdanalysis-doc_2.7.0-5_all.deb ... 140s Unpacking python-mdanalysis-doc (2.7.0-5) ... 140s Selecting previously unselected package python3.13. 140s Preparing to unpack .../123-python3.13_3.13.0-2_arm64.deb ... 140s Unpacking python3.13 (3.13.0-2) ... 140s Selecting previously unselected package python3-all. 140s Preparing to unpack .../124-python3-all_3.12.7-1_arm64.deb ... 140s Unpacking python3-all (3.12.7-1) ... 140s Selecting previously unselected package python3.12-dev. 140s Preparing to unpack .../125-python3.12-dev_3.12.7-3_arm64.deb ... 140s Unpacking python3.12-dev (3.12.7-3) ... 140s Selecting previously unselected package python3-dev. 140s Preparing to unpack .../126-python3-dev_3.12.7-1_arm64.deb ... 140s Unpacking python3-dev (3.12.7-1) ... 140s Selecting previously unselected package python3.13-dev. 140s Preparing to unpack .../127-python3.13-dev_3.13.0-2_arm64.deb ... 140s Unpacking python3.13-dev (3.13.0-2) ... 140s Selecting previously unselected package python3-all-dev. 140s Preparing to unpack .../128-python3-all-dev_3.12.7-1_arm64.deb ... 140s Unpacking python3-all-dev (3.12.7-1) ... 140s Selecting previously unselected package python3-appdirs. 140s Preparing to unpack .../129-python3-appdirs_1.4.4-4_all.deb ... 140s Unpacking python3-appdirs (1.4.4-4) ... 140s Selecting previously unselected package python3-numpy. 140s Preparing to unpack .../130-python3-numpy_1%3a1.26.4+ds-11build1_arm64.deb ... 140s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 141s Selecting previously unselected package python3.12-tk. 141s Preparing to unpack .../131-python3.12-tk_3.12.7-3_arm64.deb ... 141s Unpacking python3.12-tk (3.12.7-3) ... 141s Selecting previously unselected package python3.13-tk. 141s Preparing to unpack .../132-python3.13-tk_3.13.0-2_arm64.deb ... 141s Unpacking python3.13-tk (3.13.0-2) ... 141s Selecting previously unselected package python3-tk:arm64. 141s Preparing to unpack .../133-python3-tk_3.12.7-1_arm64.deb ... 141s Unpacking python3-tk:arm64 (3.12.7-1) ... 141s Selecting previously unselected package python3-pil.imagetk:arm64. 141s Preparing to unpack .../134-python3-pil.imagetk_10.4.0-1ubuntu1_arm64.deb ... 141s Unpacking python3-pil.imagetk:arm64 (10.4.0-1ubuntu1) ... 141s Selecting previously unselected package libopenjp2-7:arm64. 141s Preparing to unpack .../135-libopenjp2-7_2.5.0-2ubuntu1_arm64.deb ... 141s Unpacking libopenjp2-7:arm64 (2.5.0-2ubuntu1) ... 141s Selecting previously unselected package python3-pil:arm64. 141s Preparing to unpack .../136-python3-pil_10.4.0-1ubuntu1_arm64.deb ... 141s Unpacking python3-pil:arm64 (10.4.0-1ubuntu1) ... 141s Selecting previously unselected package python3-cairo. 141s Preparing to unpack .../137-python3-cairo_1.26.1-2_arm64.deb ... 141s Unpacking python3-cairo (1.26.1-2) ... 141s Selecting previously unselected package python3-freetype. 141s Preparing to unpack .../138-python3-freetype_2.5.1-1_all.deb ... 141s Unpacking python3-freetype (2.5.1-1) ... 141s Selecting previously unselected package python3-rlpycairo. 141s Preparing to unpack .../139-python3-rlpycairo_0.3.0-3_all.deb ... 141s Unpacking python3-rlpycairo (0.3.0-3) ... 141s Selecting previously unselected package python3-reportlab. 141s Preparing to unpack .../140-python3-reportlab_4.2.5-1_all.deb ... 141s Unpacking python3-reportlab (4.2.5-1) ... 141s Selecting previously unselected package w3c-sgml-lib. 141s Preparing to unpack .../141-w3c-sgml-lib_1.3-3_all.deb ... 141s Unpacking w3c-sgml-lib (1.3-3) ... 141s Selecting previously unselected package python3-biopython. 141s Preparing to unpack .../142-python3-biopython_1.84+dfsg-4_arm64.deb ... 141s Unpacking python3-biopython (1.84+dfsg-4) ... 141s Selecting previously unselected package python3-brotli. 141s Preparing to unpack .../143-python3-brotli_1.1.0-2build2_arm64.deb ... 141s Unpacking python3-brotli (1.1.0-2build2) ... 141s Selecting previously unselected package python3-cftime. 141s Preparing to unpack .../144-python3-cftime_1.6.4-1_arm64.deb ... 141s Unpacking python3-cftime (1.6.4-1) ... 141s Selecting previously unselected package python3-lxml:arm64. 141s Preparing to unpack .../145-python3-lxml_5.3.0-1_arm64.deb ... 141s Unpacking python3-lxml:arm64 (5.3.0-1) ... 142s Selecting previously unselected package python3-citeproc. 142s Preparing to unpack .../146-python3-citeproc_0.6.0-3_all.deb ... 142s Unpacking python3-citeproc (0.6.0-3) ... 142s Selecting previously unselected package python3-contourpy. 142s Preparing to unpack .../147-python3-contourpy_1.3.0-2_arm64.deb ... 142s Unpacking python3-contourpy (1.3.0-2) ... 142s Selecting previously unselected package python3-cycler. 142s Preparing to unpack .../148-python3-cycler_0.12.1-1_all.deb ... 142s Unpacking python3-cycler (0.12.1-1) ... 142s Selecting previously unselected package python3-six. 142s Preparing to unpack .../149-python3-six_1.16.0-7_all.deb ... 142s Unpacking python3-six (1.16.0-7) ... 142s Selecting previously unselected package python3-dateutil. 142s Preparing to unpack .../150-python3-dateutil_2.9.0-2_all.deb ... 142s Unpacking python3-dateutil (2.9.0-2) ... 142s Selecting previously unselected package python3-decorator. 142s Preparing to unpack .../151-python3-decorator_5.1.1-5_all.deb ... 142s Unpacking python3-decorator (5.1.1-5) ... 142s Selecting previously unselected package python3-defusedxml. 142s Preparing to unpack .../152-python3-defusedxml_0.7.1-2_all.deb ... 142s Unpacking python3-defusedxml (0.7.1-2) ... 142s Selecting previously unselected package python3-roman. 142s Preparing to unpack .../153-python3-roman_4.2-1_all.deb ... 142s Unpacking python3-roman (4.2-1) ... 142s Selecting previously unselected package python3-docutils. 142s Preparing to unpack .../154-python3-docutils_0.21.2+dfsg-2_all.deb ... 142s Unpacking python3-docutils (0.21.2+dfsg-2) ... 142s Selecting previously unselected package python3-looseversion. 142s Preparing to unpack .../155-python3-looseversion_1.3.0-3_all.deb ... 142s Unpacking python3-looseversion (1.3.0-3) ... 142s Selecting previously unselected package python3-duecredit. 142s Preparing to unpack .../156-python3-duecredit_0.10.2-2_all.deb ... 142s Unpacking python3-duecredit (0.10.2-2) ... 142s Selecting previously unselected package python3-monotonic. 142s Preparing to unpack .../157-python3-monotonic_1.6-2_all.deb ... 142s Unpacking python3-monotonic (1.6-2) ... 142s Selecting previously unselected package python3-fasteners. 142s Preparing to unpack .../158-python3-fasteners_0.18-2_all.deb ... 142s Unpacking python3-fasteners (0.18-2) ... 142s Selecting previously unselected package python3-scipy. 142s Preparing to unpack .../159-python3-scipy_1.13.1-5_arm64.deb ... 142s Unpacking python3-scipy (1.13.1-5) ... 143s Selecting previously unselected package python3-ufolib2. 143s Preparing to unpack .../160-python3-ufolib2_0.16.1+dfsg1-1_all.deb ... 143s Unpacking python3-ufolib2 (0.16.1+dfsg1-1) ... 143s Selecting previously unselected package python3-mpmath. 143s Preparing to unpack .../161-python3-mpmath_1.3.0-1_all.deb ... 143s Unpacking python3-mpmath (1.3.0-1) ... 143s Selecting previously unselected package python3-sympy. 143s Preparing to unpack .../162-python3-sympy_1.13.3-1_all.deb ... 143s Unpacking python3-sympy (1.13.3-1) ... 143s Selecting previously unselected package python3-tz. 143s Preparing to unpack .../163-python3-tz_2024.1-2_all.deb ... 143s Unpacking python3-tz (2024.1-2) ... 143s Selecting previously unselected package python3-fs. 143s Preparing to unpack .../164-python3-fs_2.4.16-4_all.deb ... 143s Unpacking python3-fs (2.4.16-4) ... 143s Selecting previously unselected package python3-lz4. 143s Preparing to unpack .../165-python3-lz4_4.0.2+dfsg-1build4_arm64.deb ... 143s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 143s Selecting previously unselected package python3-unicodedata2. 144s Preparing to unpack .../166-python3-unicodedata2_15.1.0+ds-1build1_arm64.deb ... 144s Unpacking python3-unicodedata2 (15.1.0+ds-1build1) ... 144s Selecting previously unselected package unicode-data. 144s Preparing to unpack .../167-unicode-data_15.1.0-1_all.deb ... 144s Unpacking unicode-data (15.1.0-1) ... 144s Selecting previously unselected package python3-fonttools. 144s Preparing to unpack .../168-python3-fonttools_4.46.0-1build2_arm64.deb ... 144s Unpacking python3-fonttools (4.46.0-1build2) ... 144s Selecting previously unselected package sphinx-rtd-theme-common. 144s Preparing to unpack .../169-sphinx-rtd-theme-common_3.0.1+dfsg-1_all.deb ... 144s Unpacking sphinx-rtd-theme-common (3.0.1+dfsg-1) ... 144s Selecting previously unselected package python3-mrcfile. 144s Preparing to unpack .../170-python3-mrcfile_1.5.3-3_all.deb ... 144s Unpacking python3-mrcfile (1.5.3-3) ... 144s Selecting previously unselected package python3-griddataformats. 144s Preparing to unpack .../171-python3-griddataformats_1.0.2-2_all.deb ... 144s Unpacking python3-griddataformats (1.0.2-2) ... 144s Selecting previously unselected package python3-gsd. 144s Preparing to unpack .../172-python3-gsd_3.3.0-1_arm64.deb ... 144s Unpacking python3-gsd (3.3.0-1) ... 144s Selecting previously unselected package python3-h5py-serial. 144s Preparing to unpack .../173-python3-h5py-serial_3.11.0-5ubuntu1_arm64.deb ... 144s Unpacking python3-h5py-serial (3.11.0-5ubuntu1) ... 145s Selecting previously unselected package python3-h5py. 145s Preparing to unpack .../174-python3-h5py_3.11.0-5ubuntu1_all.deb ... 145s Unpacking python3-h5py (3.11.0-5ubuntu1) ... 145s Selecting previously unselected package python3-sortedcontainers. 145s Preparing to unpack .../175-python3-sortedcontainers_2.4.0-2_all.deb ... 145s Unpacking python3-sortedcontainers (2.4.0-2) ... 145s Selecting previously unselected package python3-hypothesis. 145s Preparing to unpack .../176-python3-hypothesis_6.116.0-1_all.deb ... 145s Unpacking python3-hypothesis (6.116.0-1) ... 145s Selecting previously unselected package python3-imagesize. 145s Preparing to unpack .../177-python3-imagesize_1.4.1-1_all.deb ... 145s Unpacking python3-imagesize (1.4.1-1) ... 145s Selecting previously unselected package python3-iniconfig. 145s Preparing to unpack .../178-python3-iniconfig_1.1.1-2_all.deb ... 145s Unpacking python3-iniconfig (1.1.1-2) ... 145s Selecting previously unselected package python3-joblib. 145s Preparing to unpack .../179-python3-joblib_1.3.2-5_all.deb ... 145s Unpacking python3-joblib (1.3.2-5) ... 145s Selecting previously unselected package python3-kiwisolver. 145s Preparing to unpack .../180-python3-kiwisolver_1.4.7-2_arm64.deb ... 145s Unpacking python3-kiwisolver (1.4.7-2) ... 145s Selecting previously unselected package python3-latexcodec. 145s Preparing to unpack .../181-python3-latexcodec_3.0.0-1_all.deb ... 145s Unpacking python3-latexcodec (3.0.0-1) ... 145s Selecting previously unselected package python3-matplotlib. 145s Preparing to unpack .../182-python3-matplotlib_3.8.3-3_arm64.deb ... 145s Unpacking python3-matplotlib (3.8.3-3) ... 145s Selecting previously unselected package python3-mda-xdrlib. 145s Preparing to unpack .../183-python3-mda-xdrlib_0.2.0-3_all.deb ... 145s Unpacking python3-mda-xdrlib (0.2.0-3) ... 145s Selecting previously unselected package python3-msgpack. 145s Preparing to unpack .../184-python3-msgpack_1.0.3-3build2_arm64.deb ... 145s Unpacking python3-msgpack (1.0.3-3build2) ... 145s Selecting previously unselected package python3-mmtf. 145s Preparing to unpack .../185-python3-mmtf_1.1.3-1_all.deb ... 145s Unpacking python3-mmtf (1.1.3-1) ... 145s Selecting previously unselected package python3-threadpoolctl. 145s Preparing to unpack .../186-python3-threadpoolctl_3.1.0-1_all.deb ... 145s Unpacking python3-threadpoolctl (3.1.0-1) ... 145s Selecting previously unselected package python3-tqdm. 146s Preparing to unpack .../187-python3-tqdm_4.67.0-1_all.deb ... 146s Unpacking python3-tqdm (4.67.0-1) ... 146s Selecting previously unselected package python3-mdanalysis. 146s Preparing to unpack .../188-python3-mdanalysis_2.7.0-5_arm64.deb ... 146s Unpacking python3-mdanalysis (2.7.0-5) ... 146s Selecting previously unselected package sphinx-common. 146s Preparing to unpack .../189-sphinx-common_7.4.7-4_all.deb ... 146s Unpacking sphinx-common (7.4.7-4) ... 146s Selecting previously unselected package python3-alabaster. 146s Preparing to unpack .../190-python3-alabaster_0.7.16-0.1_all.deb ... 146s Unpacking python3-alabaster (0.7.16-0.1) ... 146s Selecting previously unselected package python3-snowballstemmer. 146s Preparing to unpack .../191-python3-snowballstemmer_2.2.0-4build1_all.deb ... 146s Unpacking python3-snowballstemmer (2.2.0-4build1) ... 146s Selecting previously unselected package python3-sphinx. 146s Preparing to unpack .../192-python3-sphinx_7.4.7-4_all.deb ... 146s Unpacking python3-sphinx (7.4.7-4) ... 146s Selecting previously unselected package python3-sphinxcontrib.jquery. 146s Preparing to unpack .../193-python3-sphinxcontrib.jquery_4.1-5_all.deb ... 146s Unpacking python3-sphinxcontrib.jquery (4.1-5) ... 146s Selecting previously unselected package python3-sphinx-rtd-theme. 146s Preparing to unpack .../194-python3-sphinx-rtd-theme_3.0.1+dfsg-1_all.deb ... 146s Unpacking python3-sphinx-rtd-theme (3.0.1+dfsg-1) ... 146s Selecting previously unselected package python3-msmb-theme. 146s Preparing to unpack .../195-python3-msmb-theme_1.2.0-4_all.deb ... 146s Unpacking python3-msmb-theme (1.2.0-4) ... 146s Selecting previously unselected package python3-netcdf4. 146s Preparing to unpack .../196-python3-netcdf4_1.7.2-1_arm64.deb ... 146s Unpacking python3-netcdf4 (1.7.2-1) ... 146s Selecting previously unselected package python3-networkx. 146s Preparing to unpack .../197-python3-networkx_3.2.1-4ubuntu1_all.deb ... 146s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 147s Selecting previously unselected package python3-pandas-lib:arm64. 147s Preparing to unpack .../198-python3-pandas-lib_2.2.3+dfsg-5_arm64.deb ... 147s Unpacking python3-pandas-lib:arm64 (2.2.3+dfsg-5) ... 147s Selecting previously unselected package python3-pandas. 147s Preparing to unpack .../199-python3-pandas_2.2.3+dfsg-5_all.deb ... 147s Unpacking python3-pandas (2.2.3+dfsg-5) ... 148s Selecting previously unselected package python3-pluggy. 148s Preparing to unpack .../200-python3-pluggy_1.5.0-1_all.deb ... 148s Unpacking python3-pluggy (1.5.0-1) ... 148s Selecting previously unselected package python3-pybtex. 148s Preparing to unpack .../201-python3-pybtex_0.24.0-4_all.deb ... 148s Unpacking python3-pybtex (0.24.0-4) ... 148s Selecting previously unselected package python3-pybtex-docutils. 148s Preparing to unpack .../202-python3-pybtex-docutils_1.0.2-1_all.deb ... 148s Unpacking python3-pybtex-docutils (1.0.2-1) ... 148s Selecting previously unselected package python3-pytest. 148s Preparing to unpack .../203-python3-pytest_8.3.3-1_all.deb ... 148s Unpacking python3-pytest (8.3.3-1) ... 148s Selecting previously unselected package python3-seaborn. 148s Preparing to unpack .../204-python3-seaborn_0.13.2-4_all.deb ... 148s Unpacking python3-seaborn (0.13.2-4) ... 148s Selecting previously unselected package python3-sklearn-lib:arm64. 148s Preparing to unpack .../205-python3-sklearn-lib_1.4.2+dfsg-6_arm64.deb ... 148s Unpacking 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(1.0.2-1) ... 259s Setting up python3-sphinx (7.4.7-4) ... 260s Setting up python3-sphinxcontrib.bibtex (2.6.2-1) ... 261s Setting up python3-sphinx-sitemap (2.6.0-1) ... 261s Setting up python3-sphinxcontrib.jquery (4.1-5) ... 261s Setting up python3-sphinx-rtd-theme (3.0.1+dfsg-1) ... 261s Setting up python3-msmb-theme (1.2.0-4) ... 261s Setting up autopkgtest-satdep (0) ... 270s (Reading database ... 106686 files and directories currently installed.) 270s Removing autopkgtest-satdep (0) ... 271s autopkgtest [09:41:20]: test test-mdanalysis: [----------------------- 271s skipping tests with SKIP_TEST_LIST= 277s ============================= test session starts ============================== 277s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 277s rootdir: /tmp/autopkgtest.IL2Lz7/build.13t/src 277s plugins: typeguard-4.4.1, hypothesis-6.116.0 277s collected 0 items / 163 errors 277s 277s ==================================== ERRORS ==================================== 277s ______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_align.py _______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_align.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _ ERROR collecting testsuite/MDAnalysisTests/analysis/test_atomicdistances.py __ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_atomicdistances.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_base.py _______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_base.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_bat.py ________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_bat.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_contacts.py _____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_contacts.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_data.py _______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_data.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_density.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_density.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_dielectric.py ____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_dielectric.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ___ ERROR collecting testsuite/MDAnalysisTests/analysis/test_diffusionmap.py ___ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_diffusionmap.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_dihedrals.py _____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_dihedrals.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_distances.py _____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_distances.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_encore.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_encore.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_gnm.py ________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_gnm.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s __ ERROR collecting testsuite/MDAnalysisTests/analysis/test_helix_analysis.py __ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_helix_analysis.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_hole2.py _______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_hole2.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _ ERROR collecting testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py _ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _ ERROR collecting testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py _ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _ ERROR collecting testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py _ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_leaflet.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_leaflet.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s __ ERROR collecting testsuite/MDAnalysisTests/analysis/test_lineardensity.py ___ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_lineardensity.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_msd.py ________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_msd.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ___ ERROR collecting testsuite/MDAnalysisTests/analysis/test_nucleicacids.py ___ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_nucleicacids.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_nuclinfo.py _____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_nuclinfo.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_pca.py ________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_pca.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _ ERROR collecting testsuite/MDAnalysisTests/analysis/test_persistencelength.py _ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_persistencelength.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_psa.py ________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_psa.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_rdf.py ________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_rdf.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_rdf_s.py _______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_rdf_s.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_rms.py ________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_rms.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s __ ERROR collecting testsuite/MDAnalysisTests/analysis/test_waterdynamics.py ___ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_waterdynamics.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_wbridge.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/analysis/test_wbridge.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/auxiliary/test_core.py _______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/auxiliary/test_core.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/auxiliary/test_edr.py _______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/auxiliary/test_edr.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/auxiliary/test_xvg.py _______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/auxiliary/test_xvg.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/converters/test_base.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/converters/test_base.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _____ ERROR collecting testsuite/MDAnalysisTests/converters/test_openmm.py _____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/converters/test_openmm.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _ ERROR collecting testsuite/MDAnalysisTests/converters/test_openmm_parser.py __ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/converters/test_openmm_parser.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _____ ERROR collecting testsuite/MDAnalysisTests/converters/test_parmed.py _____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/converters/test_parmed.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _ ERROR collecting testsuite/MDAnalysisTests/converters/test_parmed_parser.py __ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/converters/test_parmed_parser.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _____ ERROR collecting testsuite/MDAnalysisTests/converters/test_rdkit.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/converters/test_rdkit.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s __ ERROR collecting testsuite/MDAnalysisTests/converters/test_rdkit_parser.py __ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/converters/test_rdkit_parser.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_amber_inpcrd.py __ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_amber_inpcrd.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s __ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_chainreader.py __ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_chainreader.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ___ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_chemfiles.py ___ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_chemfiles.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_copying.py ____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_copying.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_crd.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_crd.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_dcd.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_dcd.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_dlpoly.py _____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_dlpoly.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_dms.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_dms.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_fhiaims.py ____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_fhiaims.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_gms.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_gms.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_gro.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_gro.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_gsd.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_gsd.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_h5md.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_h5md.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_lammps.py _____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_lammps.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_memory.py _____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_memory.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_mmtf.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_mmtf.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_mol2.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_mol2.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_namdbin.py ____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_namdbin.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_netcdf.py _____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_netcdf.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_null.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_null.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_pdb.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_pdb.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_pdbqt.py _____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_pdbqt.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_pqr.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_pqr.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s __ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_reader_api.py ___ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_reader_api.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_timestep_api.py __ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_timestep_api.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_tng.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_tng.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_trc.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_trc.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_trj.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_trj.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_trz.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_trz.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_txyz.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_txyz.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_windows.py ____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_windows.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s __ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_writer_api.py ___ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_writer_api.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_writer_registration.py _ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_writer_registration.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_xdr.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_xdr.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_xyz.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/coordinates/test_xyz.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/core/test_accessors.py _______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/core/test_accessors.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/core/test_accumulate.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/core/test_accumulate.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _________ ERROR collecting testsuite/MDAnalysisTests/core/test_atom.py _________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/core/test_atom.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/core/test_atomgroup.py _______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/core/test_atomgroup.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ____ ERROR collecting testsuite/MDAnalysisTests/core/test_atomselections.py ____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/core/test_atomselections.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/core/test_copying.py ________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/core/test_copying.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/core/test_fragments.py _______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/core/test_fragments.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s __ ERROR collecting testsuite/MDAnalysisTests/core/test_group_traj_access.py ___ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/core/test_group_traj_access.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ________ ERROR collecting testsuite/MDAnalysisTests/core/test_groups.py ________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/core/test_groups.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _____ ERROR collecting testsuite/MDAnalysisTests/core/test_index_dtype.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/core/test_index_dtype.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/core/test_requires.py _______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/core/test_requires.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/core/test_residue.py ________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/core/test_residue.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _____ ERROR collecting testsuite/MDAnalysisTests/core/test_residuegroup.py _____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/core/test_residuegroup.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/core/test_segment.py ________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/core/test_segment.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _____ ERROR collecting testsuite/MDAnalysisTests/core/test_segmentgroup.py _____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/core/test_segmentgroup.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/core/test_topology.py _______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/core/test_topology.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ____ ERROR collecting testsuite/MDAnalysisTests/core/test_topologyattrs.py _____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/core/test_topologyattrs.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ___ ERROR collecting testsuite/MDAnalysisTests/core/test_topologyobjects.py ____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/core/test_topologyobjects.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/core/test_universe.py _______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/core/test_universe.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ________ ERROR collecting testsuite/MDAnalysisTests/core/test_unwrap.py ________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/core/test_unwrap.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s __ ERROR collecting testsuite/MDAnalysisTests/core/test_updating_atomgroup.py __ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/core/test_updating_atomgroup.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _________ ERROR collecting testsuite/MDAnalysisTests/core/test_wrap.py _________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/core/test_wrap.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/formats/test_libdcd.py _______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/formats/test_libdcd.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _____ ERROR collecting testsuite/MDAnalysisTests/formats/test_libmdaxdr.py _____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/formats/test_libmdaxdr.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/import/test_import.py _______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/import/test_import.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ________ ERROR collecting testsuite/MDAnalysisTests/lib/test_augment.py ________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/lib/test_augment.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _________ ERROR collecting testsuite/MDAnalysisTests/lib/test_cutil.py _________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/lib/test_cutil.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/lib/test_distances.py _______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/lib/test_distances.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s __________ ERROR collecting testsuite/MDAnalysisTests/lib/test_log.py __________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/lib/test_log.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ____ ERROR collecting testsuite/MDAnalysisTests/lib/test_neighborsearch.py _____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/lib/test_neighborsearch.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ________ ERROR collecting testsuite/MDAnalysisTests/lib/test_nsgrid.py _________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/lib/test_nsgrid.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ________ ERROR collecting testsuite/MDAnalysisTests/lib/test_pkdtree.py ________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/lib/test_pkdtree.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ________ ERROR collecting testsuite/MDAnalysisTests/lib/test_qcprot.py _________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/lib/test_qcprot.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _________ ERROR collecting testsuite/MDAnalysisTests/lib/test_util.py __________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/lib/test_util.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _ ERROR collecting testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py _ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:25: in 277s import numpy as np 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _ ERROR collecting testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py _ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py:25: in 277s from numpy.testing import assert_almost_equal 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ____________ ERROR collecting testsuite/MDAnalysisTests/test_api.py ____________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/test_api.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/topology/test_altloc.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/topology/test_altloc.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_crd.py ________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/topology/test_crd.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/topology/test_dlpoly.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/topology/test_dlpoly.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_dms.py ________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/topology/test_dms.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _____ ERROR collecting testsuite/MDAnalysisTests/topology/test_fhiaims.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/topology/test_fhiaims.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_gms.py ________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/topology/test_gms.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_gro.py ________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/topology/test_gro.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_gsd.py ________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/topology/test_gsd.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _____ ERROR collecting testsuite/MDAnalysisTests/topology/test_guessers.py _____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/topology/test_guessers.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _____ ERROR collecting testsuite/MDAnalysisTests/topology/test_hoomdxml.py _____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/topology/test_hoomdxml.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_itp.py ________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/topology/test_itp.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ____ ERROR collecting testsuite/MDAnalysisTests/topology/test_lammpsdata.py ____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/topology/test_lammpsdata.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _____ ERROR collecting testsuite/MDAnalysisTests/topology/test_minimal.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/topology/test_minimal.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_mmtf.py _______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/topology/test_mmtf.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_mol2.py _______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/topology/test_mol2.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_pdb.py ________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/topology/test_pdb.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/topology/test_pdbqt.py _______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/topology/test_pdbqt.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_pqr.py ________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/topology/test_pqr.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_psf.py ________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/topology/test_psf.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_top.py ________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/topology/test_top.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s __ ERROR collecting testsuite/MDAnalysisTests/topology/test_topology_base.py ___ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/topology/test_topology_base.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _ ERROR collecting testsuite/MDAnalysisTests/topology/test_topology_str_types.py _ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/topology/test_topology_str_types.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ____ ERROR collecting testsuite/MDAnalysisTests/topology/test_tprparser.py _____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/topology/test_tprparser.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_txyz.py _______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/topology/test_txyz.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_xpdb.py _______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/topology/test_xpdb.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_xyz.py ________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/topology/test_xyz.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ___ ERROR collecting testsuite/MDAnalysisTests/transformations/test_base.py ____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/transformations/test_base.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _ ERROR collecting testsuite/MDAnalysisTests/transformations/test_boxdimensions.py _ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/transformations/test_boxdimensions.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ____ ERROR collecting testsuite/MDAnalysisTests/transformations/test_fit.py ____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/transformations/test_fit.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s __ ERROR collecting testsuite/MDAnalysisTests/transformations/test_nojump.py ___ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/transformations/test_nojump.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _ ERROR collecting testsuite/MDAnalysisTests/transformations/test_positionaveraging.py _ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/transformations/test_positionaveraging.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s __ ERROR collecting testsuite/MDAnalysisTests/transformations/test_rotate.py ___ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/transformations/test_rotate.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _ ERROR collecting testsuite/MDAnalysisTests/transformations/test_translate.py _ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/transformations/test_translate.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ___ ERROR collecting testsuite/MDAnalysisTests/transformations/test_wrap.py ____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/transformations/test_wrap.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/utils/test_authors.py _______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/utils/test_authors.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/utils/test_datafiles.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/utils/test_datafiles.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/utils/test_duecredit.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/utils/test_duecredit.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/utils/test_failure.py _______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/utils/test_failure.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/utils/test_imports.py _______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/utils/test_imports.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _________ ERROR collecting testsuite/MDAnalysisTests/utils/test_log.py _________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/utils/test_log.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ________ ERROR collecting testsuite/MDAnalysisTests/utils/test_meta.py _________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/utils/test_meta.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/utils/test_modelling.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/utils/test_modelling.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _____ ERROR collecting testsuite/MDAnalysisTests/utils/test_persistence.py _____ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/utils/test_persistence.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/utils/test_pickleio.py _______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/utils/test_pickleio.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _______ ERROR collecting testsuite/MDAnalysisTests/utils/test_qcprot.py ________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/utils/test_qcprot.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _____ ERROR collecting testsuite/MDAnalysisTests/utils/test_selections.py ______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/utils/test_selections.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ______ ERROR collecting testsuite/MDAnalysisTests/utils/test_streamio.py _______ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/utils/test_streamio.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ___ ERROR collecting testsuite/MDAnalysisTests/utils/test_transformations.py ___ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/utils/test_transformations.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s ________ ERROR collecting testsuite/MDAnalysisTests/utils/test_units.py ________ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/utils/test_units.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s _ ERROR collecting testsuite/MDAnalysisTests/visualization/test_streamlines.py _ 277s ImportError while importing test module '/tmp/autopkgtest.IL2Lz7/build.13t/src/testsuite/MDAnalysisTests/visualization/test_streamlines.py'. 277s Hint: make sure your test modules/packages have valid Python names. 277s Traceback: 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 277s from . import multiarray 277s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 277s from . import overrides 277s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 277s from numpy.core._multiarray_umath import ( 277s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 277s 277s During handling of the above exception, another exception occurred: 277s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 277s from numpy.__config__ import show as show_config 277s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 277s from numpy.core._multiarray_umath import ( 277s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 277s raise ImportError(msg) 277s E ImportError: 277s E 277s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 277s E 277s E Importing the numpy C-extensions failed. This error can happen for 277s E many reasons, often due to issues with your setup or how NumPy was 277s E installed. 277s E 277s E We have compiled some common reasons and troubleshooting tips at: 277s E 277s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 277s E 277s E Please note and check the following: 277s E 277s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 277s E * The NumPy version is: "1.26.4" 277s E 277s E and make sure that they are the versions you expect. 277s E Please carefully study the documentation linked above for further help. 277s E 277s E Original error was: No module named 'numpy.core._multiarray_umath' 277s 277s The above exception was the direct cause of the following exception: 277s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 277s return _bootstrap._gcd_import(name[level:], package, level) 277s testsuite/MDAnalysisTests/__init__.py:125: in 277s from MDAnalysisTests.util import ( 277s testsuite/MDAnalysisTests/util.py:41: in 277s from numpy.testing import assert_warns 277s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 277s raise ImportError(msg) from e 277s E ImportError: Error importing numpy: you should not try to import numpy from 277s E its source directory; please exit the numpy source tree, and relaunch 277s E your python interpreter from there. 277s =========================== short test summary info ============================ 277s ERROR testsuite/MDAnalysisTests/analysis/test_align.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_atomicdistances.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_base.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_bat.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_contacts.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_data.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_density.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_dielectric.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_diffusionmap.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_dihedrals.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_distances.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_encore.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_gnm.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_helix_analysis.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_hole2.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_leaflet.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_lineardensity.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_msd.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_nucleicacids.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_nuclinfo.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_pca.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_persistencelength.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_psa.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_rdf.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_rdf_s.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_rms.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_waterdynamics.py 277s ERROR testsuite/MDAnalysisTests/analysis/test_wbridge.py 277s ERROR testsuite/MDAnalysisTests/auxiliary/test_core.py 277s ERROR testsuite/MDAnalysisTests/auxiliary/test_edr.py 277s ERROR testsuite/MDAnalysisTests/auxiliary/test_xvg.py 277s ERROR testsuite/MDAnalysisTests/converters/test_base.py 277s ERROR testsuite/MDAnalysisTests/converters/test_openmm.py 277s ERROR testsuite/MDAnalysisTests/converters/test_openmm_parser.py 277s ERROR testsuite/MDAnalysisTests/converters/test_parmed.py 277s ERROR testsuite/MDAnalysisTests/converters/test_parmed_parser.py 277s ERROR testsuite/MDAnalysisTests/converters/test_rdkit.py 277s ERROR testsuite/MDAnalysisTests/converters/test_rdkit_parser.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_amber_inpcrd.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_chainreader.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_chemfiles.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_copying.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_crd.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_dcd.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_dlpoly.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_dms.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_fhiaims.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_gms.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_gro.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_gsd.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_h5md.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_lammps.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_memory.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_mmtf.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_mol2.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_namdbin.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_netcdf.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_null.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_pdb.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_pdbqt.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_pqr.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_reader_api.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_timestep_api.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_tng.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_trc.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_trj.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_trz.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_txyz.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_windows.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_writer_api.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_writer_registration.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_xdr.py 277s ERROR testsuite/MDAnalysisTests/coordinates/test_xyz.py 277s ERROR testsuite/MDAnalysisTests/core/test_accessors.py 277s ERROR testsuite/MDAnalysisTests/core/test_accumulate.py 277s ERROR testsuite/MDAnalysisTests/core/test_atom.py 277s ERROR testsuite/MDAnalysisTests/core/test_atomgroup.py 277s ERROR testsuite/MDAnalysisTests/core/test_atomselections.py 277s ERROR testsuite/MDAnalysisTests/core/test_copying.py 277s ERROR testsuite/MDAnalysisTests/core/test_fragments.py 277s ERROR testsuite/MDAnalysisTests/core/test_group_traj_access.py 277s ERROR testsuite/MDAnalysisTests/core/test_groups.py 277s ERROR testsuite/MDAnalysisTests/core/test_index_dtype.py 277s ERROR testsuite/MDAnalysisTests/core/test_requires.py 277s ERROR testsuite/MDAnalysisTests/core/test_residue.py 277s ERROR testsuite/MDAnalysisTests/core/test_residuegroup.py 277s ERROR testsuite/MDAnalysisTests/core/test_segment.py 277s ERROR testsuite/MDAnalysisTests/core/test_segmentgroup.py 277s ERROR testsuite/MDAnalysisTests/core/test_topology.py 277s ERROR testsuite/MDAnalysisTests/core/test_topologyattrs.py 277s ERROR testsuite/MDAnalysisTests/core/test_topologyobjects.py 277s ERROR testsuite/MDAnalysisTests/core/test_universe.py 277s ERROR testsuite/MDAnalysisTests/core/test_unwrap.py 277s ERROR testsuite/MDAnalysisTests/core/test_updating_atomgroup.py 277s ERROR testsuite/MDAnalysisTests/core/test_wrap.py 277s ERROR testsuite/MDAnalysisTests/formats/test_libdcd.py 277s ERROR testsuite/MDAnalysisTests/formats/test_libmdaxdr.py 277s ERROR testsuite/MDAnalysisTests/import/test_import.py 277s ERROR testsuite/MDAnalysisTests/lib/test_augment.py 277s ERROR testsuite/MDAnalysisTests/lib/test_cutil.py 277s ERROR testsuite/MDAnalysisTests/lib/test_distances.py 277s ERROR testsuite/MDAnalysisTests/lib/test_log.py 277s ERROR testsuite/MDAnalysisTests/lib/test_neighborsearch.py 277s ERROR testsuite/MDAnalysisTests/lib/test_nsgrid.py 277s ERROR testsuite/MDAnalysisTests/lib/test_pkdtree.py 277s ERROR testsuite/MDAnalysisTests/lib/test_qcprot.py 277s ERROR testsuite/MDAnalysisTests/lib/test_util.py 277s ERROR testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py 277s ERROR testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py 277s ERROR testsuite/MDAnalysisTests/test_api.py 277s ERROR testsuite/MDAnalysisTests/topology/test_altloc.py 277s ERROR testsuite/MDAnalysisTests/topology/test_crd.py 277s ERROR testsuite/MDAnalysisTests/topology/test_dlpoly.py 277s ERROR testsuite/MDAnalysisTests/topology/test_dms.py 277s ERROR testsuite/MDAnalysisTests/topology/test_fhiaims.py 277s ERROR testsuite/MDAnalysisTests/topology/test_gms.py 277s ERROR testsuite/MDAnalysisTests/topology/test_gro.py 277s ERROR testsuite/MDAnalysisTests/topology/test_gsd.py 277s ERROR testsuite/MDAnalysisTests/topology/test_guessers.py 277s ERROR testsuite/MDAnalysisTests/topology/test_hoomdxml.py 277s ERROR testsuite/MDAnalysisTests/topology/test_itp.py 277s ERROR testsuite/MDAnalysisTests/topology/test_lammpsdata.py 277s ERROR testsuite/MDAnalysisTests/topology/test_minimal.py 277s ERROR testsuite/MDAnalysisTests/topology/test_mmtf.py 277s ERROR testsuite/MDAnalysisTests/topology/test_mol2.py 277s ERROR testsuite/MDAnalysisTests/topology/test_pdb.py 277s ERROR testsuite/MDAnalysisTests/topology/test_pdbqt.py 277s ERROR testsuite/MDAnalysisTests/topology/test_pqr.py 277s ERROR testsuite/MDAnalysisTests/topology/test_psf.py 277s ERROR testsuite/MDAnalysisTests/topology/test_top.py 277s ERROR testsuite/MDAnalysisTests/topology/test_topology_base.py 277s ERROR testsuite/MDAnalysisTests/topology/test_topology_str_types.py 277s ERROR testsuite/MDAnalysisTests/topology/test_tprparser.py 277s ERROR testsuite/MDAnalysisTests/topology/test_txyz.py 277s ERROR testsuite/MDAnalysisTests/topology/test_xpdb.py 277s ERROR testsuite/MDAnalysisTests/topology/test_xyz.py 277s ERROR testsuite/MDAnalysisTests/transformations/test_base.py 277s ERROR testsuite/MDAnalysisTests/transformations/test_boxdimensions.py 277s ERROR testsuite/MDAnalysisTests/transformations/test_fit.py 277s ERROR testsuite/MDAnalysisTests/transformations/test_nojump.py 277s ERROR testsuite/MDAnalysisTests/transformations/test_positionaveraging.py 277s ERROR testsuite/MDAnalysisTests/transformations/test_rotate.py 277s ERROR testsuite/MDAnalysisTests/transformations/test_translate.py 277s ERROR testsuite/MDAnalysisTests/transformations/test_wrap.py 277s ERROR testsuite/MDAnalysisTests/utils/test_authors.py 277s ERROR testsuite/MDAnalysisTests/utils/test_datafiles.py 277s ERROR testsuite/MDAnalysisTests/utils/test_duecredit.py 277s ERROR testsuite/MDAnalysisTests/utils/test_failure.py 277s ERROR testsuite/MDAnalysisTests/utils/test_imports.py 277s ERROR testsuite/MDAnalysisTests/utils/test_log.py 277s ERROR testsuite/MDAnalysisTests/utils/test_meta.py 277s ERROR testsuite/MDAnalysisTests/utils/test_modelling.py 277s ERROR testsuite/MDAnalysisTests/utils/test_persistence.py 277s ERROR testsuite/MDAnalysisTests/utils/test_pickleio.py 277s ERROR testsuite/MDAnalysisTests/utils/test_qcprot.py 277s ERROR testsuite/MDAnalysisTests/utils/test_selections.py 277s ERROR testsuite/MDAnalysisTests/utils/test_streamio.py 277s ERROR testsuite/MDAnalysisTests/utils/test_transformations.py 277s ERROR testsuite/MDAnalysisTests/utils/test_units.py 277s ERROR testsuite/MDAnalysisTests/visualization/test_streamlines.py 277s !!!!!!!!!!!!!!!!!! Interrupted: 163 errors during collection !!!!!!!!!!!!!!!!!!! 277s ============================= 163 errors in 5.34s ============================== 277s autopkgtest [09:41:26]: test test-mdanalysis: -----------------------] 278s autopkgtest [09:41:27]: test test-mdanalysis: - - - - - - - - - - results - - - - - - - - - - 278s test-mdanalysis FAIL non-zero exit status 2 278s autopkgtest [09:41:27]: @@@@@@@@@@@@@@@@@@@@ summary 278s test-mdanalysis FAIL non-zero exit status 2 290s nova [W] Skipping flock in bos03-arm64 290s Creating nova instance adt-plucky-arm64-mdanalysis-20241113-093649-juju-7f2275-prod-proposed-migration-environment-20-a451556e-332d-40a0-b6e7-cffdd9d38e0a from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)...