0s autopkgtest [01:27:00]: starting date and time: 2025-03-16 01:27:00+0000
  0s autopkgtest [01:27:00]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [01:27:00]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.gu3ft2ql/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:scikit-learn --apt-upgrade mcaller --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=scikit-learn/1.4.2+dfsg-8 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-28.secgroup --name adt-plucky-arm64-mcaller-20250316-012659-juju-7f2275-prod-proposed-migration-environment-2-3364a6d1-d7fb-4fc4-b405-e7e281e37b54 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
172s autopkgtest [01:29:52]: testbed dpkg architecture: arm64
172s autopkgtest [01:29:52]: testbed apt version: 2.9.33
173s autopkgtest [01:29:53]: @@@@@@@@@@@@@@@@@@@@ test bed setup
173s autopkgtest [01:29:53]: testbed release detected to be: None
174s autopkgtest [01:29:54]: updating testbed package index (apt update)
174s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
175s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
175s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
175s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
176s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [41.4 kB]
176s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.7 kB]
176s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [365 kB]
176s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [72.2 kB]
176s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1816 B]
176s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B]
176s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [316 kB]
176s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [13.9 kB]
176s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [16.8 kB]
176s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B]
177s Fetched 972 kB in 2s (433 kB/s)
178s Reading package lists...
178s Reading package lists...
179s Building dependency tree...
179s Reading state information...
179s Calculating upgrade...
179s Calculating upgrade...
180s The following packages will be upgraded:
180s   pinentry-curses python3-jinja2 strace
180s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
180s Need to get 647 kB of archives.
180s After this operation, 11.3 kB of additional disk space will be used.
180s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB]
181s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB]
181s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
181s Fetched 647 kB in 1s (608 kB/s)
182s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 117701 files and directories currently installed.)
182s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ...
182s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
182s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ...
182s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ...
182s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
182s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
182s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
182s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
182s Setting up strace (6.13+ds-1ubuntu1) ...
182s Processing triggers for man-db (2.13.0-1) ...
183s Reading package lists...
183s Building dependency tree...
183s Reading state information...
184s Solving dependencies...
184s The following packages will be REMOVED:
184s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
184s   libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
184s   linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic*
184s   linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic*
184s 0 upgraded, 0 newly installed, 11 to remove and 0 not upgraded.
184s After this operation, 267 MB disk space will be freed.
184s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 117701 files and directories currently installed.)
184s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
184s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
184s Removing libpython3.12t64:arm64 (3.12.9-1) ...
185s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ...
185s Removing libnsl2:arm64 (1.3.0-3build3) ...
185s Removing libpython3.12-minimal:arm64 (3.12.9-1) ...
185s Removing libunwind8:arm64 (1.6.2-3.1) ...
185s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
185s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
187s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ...
187s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic
187s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic
187s /etc/kernel/postrm.d/initramfs-tools:
187s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic
187s /etc/kernel/postrm.d/zz-flash-kernel:
187s flash-kernel: Kernel 6.11.0-8-generic has been removed.
187s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required.
187s /etc/kernel/postrm.d/zz-update-grub:
187s Sourcing file `/etc/default/grub'
187s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
187s Generating grub configuration file ...
187s Found linux image: /boot/vmlinuz-6.14.0-10-generic
187s Found initrd image: /boot/initrd.img-6.14.0-10-generic
188s Warning: os-prober will not be executed to detect other bootable partitions.
188s Systems on them will not be added to the GRUB boot configuration.
188s Check GRUB_DISABLE_OS_PROBER documentation entry.
188s Adding boot menu entry for UEFI Firmware Settings ...
188s done
188s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
188s Processing triggers for libc-bin (2.41-1ubuntu1) ...
188s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81650 files and directories currently installed.)
188s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ...
188s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ...
188s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
189s autopkgtest [01:30:09]: upgrading testbed (apt dist-upgrade and autopurge)
189s Reading package lists...
189s Building dependency tree...
189s Reading state information...
190s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
190s Starting 2 pkgProblemResolver with broken count: 0
190s Done
191s Entering ResolveByKeep
191s 
191s Calculating upgrade...
191s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
192s Reading package lists...
192s Building dependency tree...
192s Reading state information...
192s Starting pkgProblemResolver with broken count: 0
192s Starting 2 pkgProblemResolver with broken count: 0
192s Done
193s Solving dependencies...
193s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
194s autopkgtest [01:30:14]: rebooting testbed after setup commands that affected boot
217s autopkgtest [01:30:37]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025
219s autopkgtest [01:30:39]: @@@@@@@@@@@@@@@@@@@@ apt-source mcaller
229s Get:1 http://ftpmaster.internal/ubuntu plucky/universe mcaller 1.0.3+git20210624.b415090-3 (dsc) [2372 B]
229s Get:2 http://ftpmaster.internal/ubuntu plucky/universe mcaller 1.0.3+git20210624.b415090-3 (tar) [6613 kB]
229s Get:3 http://ftpmaster.internal/ubuntu plucky/universe mcaller 1.0.3+git20210624.b415090-3 (diff) [7488 B]
230s gpgv: Signature made Wed Apr 27 22:26:52 2022 UTC
230s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
230s gpgv:                issuer "emollier@debian.org"
230s gpgv: Can't check signature: No public key
230s dpkg-source: warning: cannot verify inline signature for ./mcaller_1.0.3+git20210624.b415090-3.dsc: no acceptable signature found
230s autopkgtest [01:30:50]: testing package mcaller version 1.0.3+git20210624.b415090-3
231s autopkgtest [01:30:51]: build not needed
232s autopkgtest [01:30:52]: test run-unit-test: preparing testbed
232s Reading package lists...
233s Building dependency tree...
233s Reading state information...
233s Starting pkgProblemResolver with broken count: 0
233s Starting 2 pkgProblemResolver with broken count: 0
233s Done
234s The following NEW packages will be installed:
234s   blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx
234s   fonts-urw-base35 libaec0 libblas3 libcairo2 libdeflate0 libfontconfig1
234s   libfontenc1 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-310
234s   libhdf5-hl-310 libhts3t64 libhtscodecs2 libimagequant0 libjbig0
234s   libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0
234s   liblcms2-2 liblerc4 liblzf1 libopenjp2-7 libpixman-1-0 libqhull-r8.0
234s   libraqm0 libsharpyuv0 libsz2 libtcl8.6 libtiff6 libtk8.6 libwebp7
234s   libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1
234s   libxslt1.1 libxss1 mcaller python-matplotlib-data python3-biopython
234s   python3-brotli python3-cairo python3-contourpy python3-cycler
234s   python3-dateutil python3-decorator python3-fonttools python3-freetype
234s   python3-fs python3-h5py python3-h5py-serial python3-joblib
234s   python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib
234s   python3-mpmath python3-numpy python3-numpy-dev python3-packaging
234s   python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk
234s   python3-platformdirs python3-pysam python3-pytz python3-reportlab
234s   python3-rlpycairo python3-scipy python3-seaborn python3-sklearn
234s   python3-sklearn-lib python3-sympy python3-threadpoolctl python3-tk
234s   python3-tz python3-ufolib2 python3-unicodedata2 python3.12-tk python3.13-tk
234s   sgml-base tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xfonts-encodings
234s   xfonts-utils xml-core
234s 0 upgraded, 101 newly installed, 0 to remove and 0 not upgraded.
234s Need to get 106 MB of archives.
234s After this operation, 448 MB of additional disk space will be used.
234s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy-dev arm64 1:2.2.3+ds-5 [146 kB]
235s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB]
235s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB]
235s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB]
238s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:2.2.3+ds-5 [3981 kB]
243s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 sgml-base all 1.31 [11.4 kB]
243s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB]
244s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
245s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
246s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontenc1 arm64 1:1.1.8-1build1 [13.9 kB]
246s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
246s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB]
247s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 xfonts-utils arm64 1:7.7+7 [95.6 kB]
247s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-urw-base35 all 20200910-8 [11.0 MB]
259s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB]
259s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB]
259s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB]
259s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB]
259s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B]
259s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB]
260s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-8 [624 kB]
261s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 blt arm64 2.5.3+dfsg-8 [4824 B]
261s Get:23 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lyx all 2.4.3-1 [171 kB]
261s Get:24 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB]
261s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB]
261s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB]
261s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B]
261s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB]
262s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB]
262s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB]
262s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB]
262s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB]
263s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B]
263s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-310 arm64 1.14.5+repack-3 [1331 kB]
264s Get:35 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [59.8 kB]
264s Get:36 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhtscodecs2 arm64 1.6.1-2 [82.7 kB]
264s Get:37 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhts3t64 arm64 1.21+ds-1 [441 kB]
265s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB]
265s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB]
265s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
265s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
265s Get:42 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
265s Get:43 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB]
265s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB]
266s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB]
266s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblzf1 arm64 3.6-4 [7426 B]
266s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB]
266s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libraqm0 arm64 0.10.2-1 [14.9 kB]
266s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB]
266s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB]
266s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB]
266s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB]
266s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [12.5 kB]
266s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpmux3 arm64 1.5.0-0.1 [25.4 kB]
266s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libxslt1.1 arm64 1.1.39-0exp1ubuntu2 [168 kB]
267s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-joblib all 1.4.2-3 [205 kB]
267s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB]
267s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.14.1-4ubuntu2 [16.7 MB]
284s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-threadpoolctl all 3.1.0-1 [21.3 kB]
284s Get:60 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 python3-sklearn-lib arm64 1.4.2+dfsg-8 [4109 kB]
288s Get:61 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 python3-sklearn all 1.4.2+dfsg-8 [2258 kB]
290s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py-serial arm64 3.13.0-1 [1126 kB]
291s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py all 3.13.0-1 [7978 B]
291s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-tk arm64 3.12.9-1 [115 kB]
291s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-tk arm64 3.13.2-2 [106 kB]
291s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tk arm64 3.13.1-1 [9770 B]
291s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pil.imagetk arm64 11.1.0-5build1 [9892 B]
291s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libopenjp2-7 arm64 2.5.3-2 [183 kB]
291s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pil arm64 11.1.0-5build1 [463 kB]
292s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-cairo arm64 1.26.1-2build2 [122 kB]
292s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-freetype all 2.5.1-1 [92.3 kB]
292s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-rlpycairo all 0.3.0-3 [9130 B]
292s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-reportlab all 4.3.1-1 [1137 kB]
293s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 xml-core all 0.19 [20.3 kB]
293s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 w3c-sgml-lib all 1.3-3 [280 kB]
293s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-biopython arm64 1.85+dfsg-2build1 [1711 kB]
294s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-matplotlib-data all 3.8.3-7build1 [2934 kB]
297s Get:78 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-3 [80.2 kB]
297s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-contourpy arm64 1.3.1-1build1 [182 kB]
297s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-cycler all 0.12.1-1 [9716 B]
297s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-brotli arm64 1.1.0-2build4 [342 kB]
297s Get:82 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-platformdirs all 4.3.6-1 [16.8 kB]
297s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fs all 2.4.16-7 [90.8 kB]
297s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-lxml arm64 5.3.1-1build1 [1258 kB]
298s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-lz4 arm64 4.4.0+dfsg-1build1 [27.1 kB]
298s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mpmath all 1.3.0-1 [425 kB]
299s Get:87 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sympy all 1.13.3-5 [4229 kB]
302s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB]
302s Get:89 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-unicodedata2 arm64 15.1.0+ds-1build3 [360 kB]
302s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 unicode-data all 15.1.0-1 [8878 kB]
308s Get:91 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fonttools arm64 4.55.3-2build1 [1466 kB]
309s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-kiwisolver arm64 1.4.7-3build1 [50.7 kB]
309s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.2-1 [51.5 kB]
309s Get:94 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-matplotlib arm64 3.8.3-7build1 [17.3 MB]
321s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pytz all 2025.1-3 [162 kB]
321s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tz all 2025.1-3 [1866 B]
321s Get:97 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas-lib arm64 2.2.3+dfsg-8build1 [4586 kB]
323s Get:98 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas all 2.2.3+dfsg-8build1 [3112 kB]
325s Get:99 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-seaborn all 0.13.2-4.1 [225 kB]
325s Get:100 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pysam arm64 0.23.0+ds-1build1 [3621 kB]
326s Get:101 http://ftpmaster.internal/ubuntu plucky/universe arm64 mcaller all 1.0.3+git20210624.b415090-3 [19.3 kB]
326s Fetched 106 MB in 1min 32s (1158 kB/s)
326s Selecting previously unselected package python3-numpy-dev:arm64.
327s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81647 files and directories currently installed.)
327s Preparing to unpack .../000-python3-numpy-dev_1%3a2.2.3+ds-5_arm64.deb ...
327s Unpacking python3-numpy-dev:arm64 (1:2.2.3+ds-5) ...
327s Selecting previously unselected package libblas3:arm64.
327s Preparing to unpack .../001-libblas3_3.12.1-2_arm64.deb ...
327s Unpacking libblas3:arm64 (3.12.1-2) ...
327s Selecting previously unselected package libgfortran5:arm64.
327s Preparing to unpack .../002-libgfortran5_15-20250222-0ubuntu1_arm64.deb ...
327s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ...
327s Selecting previously unselected package liblapack3:arm64.
327s Preparing to unpack .../003-liblapack3_3.12.1-2_arm64.deb ...
327s Unpacking liblapack3:arm64 (3.12.1-2) ...
327s Selecting previously unselected package python3-numpy.
327s Preparing to unpack .../004-python3-numpy_1%3a2.2.3+ds-5_arm64.deb ...
327s Unpacking python3-numpy (1:2.2.3+ds-5) ...
327s Selecting previously unselected package sgml-base.
327s Preparing to unpack .../005-sgml-base_1.31_all.deb ...
327s Unpacking sgml-base (1.31) ...
327s Selecting previously unselected package libtcl8.6:arm64.
327s Preparing to unpack .../006-libtcl8.6_8.6.16+dfsg-1_arm64.deb ...
327s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ...
327s Selecting previously unselected package fonts-dejavu-mono.
327s Preparing to unpack .../007-fonts-dejavu-mono_2.37-8_all.deb ...
327s Unpacking fonts-dejavu-mono (2.37-8) ...
327s Selecting previously unselected package fonts-dejavu-core.
327s Preparing to unpack .../008-fonts-dejavu-core_2.37-8_all.deb ...
327s Unpacking fonts-dejavu-core (2.37-8) ...
327s Selecting previously unselected package libfontenc1:arm64.
327s Preparing to unpack .../009-libfontenc1_1%3a1.1.8-1build1_arm64.deb ...
327s Unpacking libfontenc1:arm64 (1:1.1.8-1build1) ...
327s Selecting previously unselected package x11-common.
327s Preparing to unpack .../010-x11-common_1%3a7.7+23ubuntu3_all.deb ...
327s Unpacking x11-common (1:7.7+23ubuntu3) ...
327s Selecting previously unselected package xfonts-encodings.
327s Preparing to unpack .../011-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ...
327s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ...
327s Selecting previously unselected package xfonts-utils.
327s Preparing to unpack .../012-xfonts-utils_1%3a7.7+7_arm64.deb ...
327s Unpacking xfonts-utils (1:7.7+7) ...
327s Selecting previously unselected package fonts-urw-base35.
327s Preparing to unpack .../013-fonts-urw-base35_20200910-8_all.deb ...
328s Unpacking fonts-urw-base35 (20200910-8) ...
328s Selecting previously unselected package fontconfig-config.
328s Preparing to unpack .../014-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ...
328s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
328s Selecting previously unselected package libfontconfig1:arm64.
328s Preparing to unpack .../015-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ...
328s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ...
328s Selecting previously unselected package libxrender1:arm64.
328s Preparing to unpack .../016-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ...
328s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ...
328s Selecting previously unselected package libxft2:arm64.
328s Preparing to unpack .../017-libxft2_2.3.6-1build1_arm64.deb ...
328s Unpacking libxft2:arm64 (2.3.6-1build1) ...
328s Selecting previously unselected package libxss1:arm64.
328s Preparing to unpack .../018-libxss1_1%3a1.2.3-1build3_arm64.deb ...
328s Unpacking libxss1:arm64 (1:1.2.3-1build3) ...
328s Selecting previously unselected package libtk8.6:arm64.
328s Preparing to unpack .../019-libtk8.6_8.6.16-1_arm64.deb ...
328s Unpacking libtk8.6:arm64 (8.6.16-1) ...
328s Selecting previously unselected package tk8.6-blt2.5.
328s Preparing to unpack .../020-tk8.6-blt2.5_2.5.3+dfsg-8_arm64.deb ...
328s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ...
328s Selecting previously unselected package blt.
328s Preparing to unpack .../021-blt_2.5.3+dfsg-8_arm64.deb ...
328s Unpacking blt (2.5.3+dfsg-8) ...
328s Selecting previously unselected package fonts-lyx.
328s Preparing to unpack .../022-fonts-lyx_2.4.3-1_all.deb ...
328s Unpacking fonts-lyx (2.4.3-1) ...
328s Selecting previously unselected package libaec0:arm64.
328s Preparing to unpack .../023-libaec0_1.1.3-1_arm64.deb ...
328s Unpacking libaec0:arm64 (1.1.3-1) ...
328s Selecting previously unselected package libpixman-1-0:arm64.
328s Preparing to unpack .../024-libpixman-1-0_0.44.0-3_arm64.deb ...
328s Unpacking libpixman-1-0:arm64 (0.44.0-3) ...
328s Selecting previously unselected package libxcb-render0:arm64.
328s Preparing to unpack .../025-libxcb-render0_1.17.0-2_arm64.deb ...
328s Unpacking libxcb-render0:arm64 (1.17.0-2) ...
328s Selecting previously unselected package libxcb-shm0:arm64.
328s Preparing to unpack .../026-libxcb-shm0_1.17.0-2_arm64.deb ...
328s Unpacking libxcb-shm0:arm64 (1.17.0-2) ...
328s Selecting previously unselected package libcairo2:arm64.
328s Preparing to unpack .../027-libcairo2_1.18.2-2_arm64.deb ...
328s Unpacking libcairo2:arm64 (1.18.2-2) ...
328s Selecting previously unselected package libdeflate0:arm64.
328s Preparing to unpack .../028-libdeflate0_1.23-1_arm64.deb ...
328s Unpacking libdeflate0:arm64 (1.23-1) ...
328s Selecting previously unselected package libgomp1:arm64.
328s Preparing to unpack .../029-libgomp1_15-20250222-0ubuntu1_arm64.deb ...
328s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ...
328s Selecting previously unselected package libgraphite2-3:arm64.
328s Preparing to unpack .../030-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ...
328s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
328s Selecting previously unselected package libharfbuzz0b:arm64.
328s Preparing to unpack .../031-libharfbuzz0b_10.2.0-1_arm64.deb ...
328s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ...
328s Selecting previously unselected package libsz2:arm64.
328s Preparing to unpack .../032-libsz2_1.1.3-1_arm64.deb ...
328s Unpacking libsz2:arm64 (1.1.3-1) ...
329s Selecting previously unselected package libhdf5-310:arm64.
329s Preparing to unpack .../033-libhdf5-310_1.14.5+repack-3_arm64.deb ...
329s Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ...
329s Selecting previously unselected package libhdf5-hl-310:arm64.
329s Preparing to unpack .../034-libhdf5-hl-310_1.14.5+repack-3_arm64.deb ...
329s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3) ...
329s Selecting previously unselected package libhtscodecs2:arm64.
329s Preparing to unpack .../035-libhtscodecs2_1.6.1-2_arm64.deb ...
329s Unpacking libhtscodecs2:arm64 (1.6.1-2) ...
329s Selecting previously unselected package libhts3t64:arm64.
329s Preparing to unpack .../036-libhts3t64_1.21+ds-1_arm64.deb ...
329s Unpacking libhts3t64:arm64 (1.21+ds-1) ...
329s Selecting previously unselected package libimagequant0:arm64.
329s Preparing to unpack .../037-libimagequant0_2.18.0-1build1_arm64.deb ...
329s Unpacking libimagequant0:arm64 (2.18.0-1build1) ...
329s Selecting previously unselected package libjpeg-turbo8:arm64.
329s Preparing to unpack .../038-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ...
329s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ...
329s Selecting previously unselected package libjpeg8:arm64.
329s Preparing to unpack .../039-libjpeg8_8c-2ubuntu11_arm64.deb ...
329s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
329s Selecting previously unselected package libjs-jquery.
329s Preparing to unpack .../040-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
329s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
329s Selecting previously unselected package libjs-jquery-ui.
329s Preparing to unpack .../041-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
329s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
329s Selecting previously unselected package liblbfgsb0:arm64.
329s Preparing to unpack .../042-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ...
329s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ...
329s Selecting previously unselected package liblcms2-2:arm64.
329s Preparing to unpack .../043-liblcms2-2_2.16-2_arm64.deb ...
329s Unpacking liblcms2-2:arm64 (2.16-2) ...
329s Selecting previously unselected package liblerc4:arm64.
329s Preparing to unpack .../044-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ...
329s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
329s Selecting previously unselected package liblzf1:arm64.
329s Preparing to unpack .../045-liblzf1_3.6-4_arm64.deb ...
329s Unpacking liblzf1:arm64 (3.6-4) ...
329s Selecting previously unselected package libqhull-r8.0:arm64.
329s Preparing to unpack .../046-libqhull-r8.0_2020.2-6build1_arm64.deb ...
329s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ...
329s Selecting previously unselected package libraqm0:arm64.
329s Preparing to unpack .../047-libraqm0_0.10.2-1_arm64.deb ...
329s Unpacking libraqm0:arm64 (0.10.2-1) ...
329s Selecting previously unselected package libsharpyuv0:arm64.
329s Preparing to unpack .../048-libsharpyuv0_1.5.0-0.1_arm64.deb ...
329s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ...
329s Selecting previously unselected package libjbig0:arm64.
329s Preparing to unpack .../049-libjbig0_2.1-6.1ubuntu2_arm64.deb ...
329s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ...
329s Selecting previously unselected package libwebp7:arm64.
329s Preparing to unpack .../050-libwebp7_1.5.0-0.1_arm64.deb ...
329s Unpacking libwebp7:arm64 (1.5.0-0.1) ...
329s Selecting previously unselected package libtiff6:arm64.
329s Preparing to unpack .../051-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ...
329s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ...
329s Selecting previously unselected package libwebpdemux2:arm64.
329s Preparing to unpack .../052-libwebpdemux2_1.5.0-0.1_arm64.deb ...
329s Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ...
329s Selecting previously unselected package libwebpmux3:arm64.
329s Preparing to unpack .../053-libwebpmux3_1.5.0-0.1_arm64.deb ...
329s Unpacking libwebpmux3:arm64 (1.5.0-0.1) ...
329s Selecting previously unselected package libxslt1.1:arm64.
329s Preparing to unpack .../054-libxslt1.1_1.1.39-0exp1ubuntu2_arm64.deb ...
329s Unpacking libxslt1.1:arm64 (1.1.39-0exp1ubuntu2) ...
329s Selecting previously unselected package python3-joblib.
329s Preparing to unpack .../055-python3-joblib_1.4.2-3_all.deb ...
329s Unpacking python3-joblib (1.4.2-3) ...
329s Selecting previously unselected package python3-decorator.
329s Preparing to unpack .../056-python3-decorator_5.1.1-5_all.deb ...
329s Unpacking python3-decorator (5.1.1-5) ...
329s Selecting previously unselected package python3-scipy.
329s Preparing to unpack .../057-python3-scipy_1.14.1-4ubuntu2_arm64.deb ...
329s Unpacking python3-scipy (1.14.1-4ubuntu2) ...
330s Selecting previously unselected package python3-threadpoolctl.
330s Preparing to unpack .../058-python3-threadpoolctl_3.1.0-1_all.deb ...
330s Unpacking python3-threadpoolctl (3.1.0-1) ...
330s Selecting previously unselected package python3-sklearn-lib:arm64.
330s Preparing to unpack .../059-python3-sklearn-lib_1.4.2+dfsg-8_arm64.deb ...
330s Unpacking python3-sklearn-lib:arm64 (1.4.2+dfsg-8) ...
330s Selecting previously unselected package python3-sklearn.
330s Preparing to unpack .../060-python3-sklearn_1.4.2+dfsg-8_all.deb ...
330s Unpacking python3-sklearn (1.4.2+dfsg-8) ...
330s Selecting previously unselected package python3-h5py-serial.
330s Preparing to unpack .../061-python3-h5py-serial_3.13.0-1_arm64.deb ...
330s Unpacking python3-h5py-serial (3.13.0-1) ...
330s Selecting previously unselected package python3-h5py.
330s Preparing to unpack .../062-python3-h5py_3.13.0-1_all.deb ...
330s Unpacking python3-h5py (3.13.0-1) ...
330s Selecting previously unselected package python3.12-tk.
330s Preparing to unpack .../063-python3.12-tk_3.12.9-1_arm64.deb ...
330s Unpacking python3.12-tk (3.12.9-1) ...
330s Selecting previously unselected package python3.13-tk.
330s Preparing to unpack .../064-python3.13-tk_3.13.2-2_arm64.deb ...
330s Unpacking python3.13-tk (3.13.2-2) ...
330s Selecting previously unselected package python3-tk:arm64.
330s Preparing to unpack .../065-python3-tk_3.13.1-1_arm64.deb ...
330s Unpacking python3-tk:arm64 (3.13.1-1) ...
330s Selecting previously unselected package python3-pil.imagetk:arm64.
330s Preparing to unpack .../066-python3-pil.imagetk_11.1.0-5build1_arm64.deb ...
330s Unpacking python3-pil.imagetk:arm64 (11.1.0-5build1) ...
330s Selecting previously unselected package libopenjp2-7:arm64.
330s Preparing to unpack .../067-libopenjp2-7_2.5.3-2_arm64.deb ...
330s Unpacking libopenjp2-7:arm64 (2.5.3-2) ...
330s Selecting previously unselected package python3-pil:arm64.
330s Preparing to unpack .../068-python3-pil_11.1.0-5build1_arm64.deb ...
330s Unpacking python3-pil:arm64 (11.1.0-5build1) ...
331s Selecting previously unselected package python3-cairo.
331s Preparing to unpack .../069-python3-cairo_1.26.1-2build2_arm64.deb ...
331s Unpacking python3-cairo (1.26.1-2build2) ...
331s Selecting previously unselected package python3-freetype.
331s Preparing to unpack .../070-python3-freetype_2.5.1-1_all.deb ...
331s Unpacking python3-freetype (2.5.1-1) ...
331s Selecting previously unselected package python3-rlpycairo.
331s Preparing to unpack .../071-python3-rlpycairo_0.3.0-3_all.deb ...
331s Unpacking python3-rlpycairo (0.3.0-3) ...
331s Selecting previously unselected package python3-reportlab.
331s Preparing to unpack .../072-python3-reportlab_4.3.1-1_all.deb ...
331s Unpacking python3-reportlab (4.3.1-1) ...
331s Selecting previously unselected package xml-core.
331s Preparing to unpack .../073-xml-core_0.19_all.deb ...
331s Unpacking xml-core (0.19) ...
331s Selecting previously unselected package w3c-sgml-lib.
331s Preparing to unpack .../074-w3c-sgml-lib_1.3-3_all.deb ...
331s Unpacking w3c-sgml-lib (1.3-3) ...
331s Selecting previously unselected package python3-biopython.
331s Preparing to unpack .../075-python3-biopython_1.85+dfsg-2build1_arm64.deb ...
331s Unpacking python3-biopython (1.85+dfsg-2build1) ...
331s Selecting previously unselected package python-matplotlib-data.
331s Preparing to unpack .../076-python-matplotlib-data_3.8.3-7build1_all.deb ...
331s Unpacking python-matplotlib-data (3.8.3-7build1) ...
331s Selecting previously unselected package python3-dateutil.
331s Preparing to unpack .../077-python3-dateutil_2.9.0-3_all.deb ...
331s Unpacking python3-dateutil (2.9.0-3) ...
331s Selecting previously unselected package python3-contourpy.
331s Preparing to unpack .../078-python3-contourpy_1.3.1-1build1_arm64.deb ...
331s Unpacking python3-contourpy (1.3.1-1build1) ...
331s Selecting previously unselected package python3-cycler.
331s Preparing to unpack .../079-python3-cycler_0.12.1-1_all.deb ...
331s Unpacking python3-cycler (0.12.1-1) ...
331s Selecting previously unselected package python3-brotli.
331s Preparing to unpack .../080-python3-brotli_1.1.0-2build4_arm64.deb ...
331s Unpacking python3-brotli (1.1.0-2build4) ...
331s Selecting previously unselected package python3-platformdirs.
331s Preparing to unpack .../081-python3-platformdirs_4.3.6-1_all.deb ...
331s Unpacking python3-platformdirs (4.3.6-1) ...
331s Selecting previously unselected package python3-fs.
331s Preparing to unpack .../082-python3-fs_2.4.16-7_all.deb ...
331s Unpacking python3-fs (2.4.16-7) ...
331s Selecting previously unselected package python3-lxml:arm64.
331s Preparing to unpack .../083-python3-lxml_5.3.1-1build1_arm64.deb ...
331s Unpacking python3-lxml:arm64 (5.3.1-1build1) ...
331s Selecting previously unselected package python3-lz4.
331s Preparing to unpack .../084-python3-lz4_4.4.0+dfsg-1build1_arm64.deb ...
331s Unpacking python3-lz4 (4.4.0+dfsg-1build1) ...
331s Selecting previously unselected package python3-mpmath.
331s Preparing to unpack .../085-python3-mpmath_1.3.0-1_all.deb ...
331s Unpacking python3-mpmath (1.3.0-1) ...
331s Selecting previously unselected package python3-sympy.
331s Preparing to unpack .../086-python3-sympy_1.13.3-5_all.deb ...
331s Unpacking python3-sympy (1.13.3-5) ...
332s Selecting previously unselected package python3-ufolib2.
332s Preparing to unpack .../087-python3-ufolib2_0.17.0+dfsg1-1_all.deb ...
332s Unpacking python3-ufolib2 (0.17.0+dfsg1-1) ...
332s Selecting previously unselected package python3-unicodedata2.
332s Preparing to unpack .../088-python3-unicodedata2_15.1.0+ds-1build3_arm64.deb ...
332s Unpacking python3-unicodedata2 (15.1.0+ds-1build3) ...
332s Selecting previously unselected package unicode-data.
332s Preparing to unpack .../089-unicode-data_15.1.0-1_all.deb ...
332s Unpacking unicode-data (15.1.0-1) ...
332s Selecting previously unselected package python3-fonttools.
332s Preparing to unpack .../090-python3-fonttools_4.55.3-2build1_arm64.deb ...
332s Unpacking python3-fonttools (4.55.3-2build1) ...
332s Selecting previously unselected package python3-kiwisolver.
332s Preparing to unpack .../091-python3-kiwisolver_1.4.7-3build1_arm64.deb ...
332s Unpacking python3-kiwisolver (1.4.7-3build1) ...
332s Selecting previously unselected package python3-packaging.
332s Preparing to unpack .../092-python3-packaging_24.2-1_all.deb ...
332s Unpacking python3-packaging (24.2-1) ...
332s Selecting previously unselected package python3-matplotlib.
332s Preparing to unpack .../093-python3-matplotlib_3.8.3-7build1_arm64.deb ...
332s Unpacking python3-matplotlib (3.8.3-7build1) ...
333s Selecting previously unselected package python3-pytz.
333s Preparing to unpack .../094-python3-pytz_2025.1-3_all.deb ...
333s Unpacking python3-pytz (2025.1-3) ...
333s Selecting previously unselected package python3-tz.
333s Preparing to unpack .../095-python3-tz_2025.1-3_all.deb ...
333s Unpacking python3-tz (2025.1-3) ...
333s Selecting previously unselected package python3-pandas-lib:arm64.
333s Preparing to unpack .../096-python3-pandas-lib_2.2.3+dfsg-8build1_arm64.deb ...
333s Unpacking python3-pandas-lib:arm64 (2.2.3+dfsg-8build1) ...
333s Selecting previously unselected package python3-pandas.
333s Preparing to unpack .../097-python3-pandas_2.2.3+dfsg-8build1_all.deb ...
333s Unpacking python3-pandas (2.2.3+dfsg-8build1) ...
333s Selecting previously unselected package python3-seaborn.
333s Preparing to unpack .../098-python3-seaborn_0.13.2-4.1_all.deb ...
333s Unpacking python3-seaborn (0.13.2-4.1) ...
333s Selecting previously unselected package python3-pysam.
333s Preparing to unpack .../099-python3-pysam_0.23.0+ds-1build1_arm64.deb ...
333s Unpacking python3-pysam (0.23.0+ds-1build1) ...
333s Selecting previously unselected package mcaller.
333s Preparing to unpack .../100-mcaller_1.0.3+git20210624.b415090-3_all.deb ...
333s Unpacking mcaller (1.0.3+git20210624.b415090-3) ...
333s Setting up libhtscodecs2:arm64 (1.6.1-2) ...
333s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
333s Setting up liblcms2-2:arm64 (2.16-2) ...
333s Setting up libpixman-1-0:arm64 (0.44.0-3) ...
333s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ...
333s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
333s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ...
333s Setting up python3-joblib (1.4.2-3) ...
334s Setting up python3-lz4 (4.4.0+dfsg-1build1) ...
334s Setting up libxcb-render0:arm64 (1.17.0-2) ...
334s Setting up python3-unicodedata2 (15.1.0+ds-1build3) ...
334s Setting up fonts-lyx (2.4.3-1) ...
334s Setting up python3-threadpoolctl (3.1.0-1) ...
334s Setting up x11-common (1:7.7+23ubuntu3) ...
334s Setting up libdeflate0:arm64 (1.23-1) ...
334s Setting up libqhull-r8.0:arm64 (2020.2-6build1) ...
334s Setting up python3-pytz (2025.1-3) ...
335s Setting up libxcb-shm0:arm64 (1.17.0-2) ...
335s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ...
335s Setting up python3-freetype (2.5.1-1) ...
335s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ...
335s Setting up libaec0:arm64 (1.1.3-1) ...
335s Setting up python3-platformdirs (4.3.6-1) ...
335s Setting up python3-tz (2025.1-3) ...
335s Setting up python3-fs (2.4.16-7) ...
335s Setting up unicode-data (15.1.0-1) ...
335s Setting up python3-decorator (5.1.1-5) ...
335s Setting up libfontenc1:arm64 (1:1.1.8-1build1) ...
335s Setting up libblas3:arm64 (3.12.1-2) ...
335s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
335s Setting up python3-packaging (24.2-1) ...
335s Setting up python3-brotli (1.1.0-2build4) ...
335s Setting up liblzf1:arm64 (3.6-4) ...
335s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ...
335s Setting up python3-cycler (0.12.1-1) ...
336s Setting up libimagequant0:arm64 (2.18.0-1build1) ...
336s Setting up fonts-dejavu-mono (2.37-8) ...
336s Setting up python3-kiwisolver (1.4.7-3build1) ...
336s Setting up python3-numpy-dev:arm64 (1:2.2.3+ds-5) ...
336s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ...
336s Setting up fonts-dejavu-core (2.37-8) ...
336s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ...
336s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ...
336s Setting up libwebp7:arm64 (1.5.0-0.1) ...
336s Setting up libxslt1.1:arm64 (1.1.39-0exp1ubuntu2) ...
336s Setting up libhts3t64:arm64 (1.21+ds-1) ...
336s Setting up libopenjp2-7:arm64 (2.5.3-2) ...
336s Setting up libharfbuzz0b:arm64 (10.2.0-1) ...
336s Setting up python3-dateutil (2.9.0-3) ...
336s Setting up sgml-base (1.31) ...
336s Setting up libxss1:arm64 (1:1.2.3-1build3) ...
336s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
336s Setting up python3-mpmath (1.3.0-1) ...
336s Setting up python-matplotlib-data (3.8.3-7build1) ...
336s Setting up libwebpmux3:arm64 (1.5.0-0.1) ...
336s Setting up libsz2:arm64 (1.1.3-1) ...
336s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
336s Setting up python3-sympy (1.13.3-5) ...
343s Setting up liblapack3:arm64 (3.12.1-2) ...
343s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
343s Setting up python3-pysam (0.23.0+ds-1build1) ...
343s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
343s Setting up libwebpdemux2:arm64 (1.5.0-0.1) ...
343s Setting up xfonts-utils (1:7.7+7) ...
343s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
343s Setting up libraqm0:arm64 (0.10.2-1) ...
343s Setting up python3-numpy (1:2.2.3+ds-5) ...
345s Setting up libhdf5-310:arm64 (1.14.5+repack-3) ...
345s Setting up python3-lxml:arm64 (5.3.1-1build1) ...
345s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ...
345s Setting up xml-core (0.19) ...
345s Setting up python3-contourpy (1.3.1-1build1) ...
345s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ...
345s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ...
345s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3) ...
345s Setting up libxft2:arm64 (2.3.6-1build1) ...
345s Setting up python3-scipy (1.14.1-4ubuntu2) ...
349s Setting up libtk8.6:arm64 (8.6.16-1) ...
349s Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-8build1) ...
349s Setting up python3.12-tk (3.12.9-1) ...
349s Setting up python3-sklearn-lib:arm64 (1.4.2+dfsg-8) ...
349s Setting up python3-h5py-serial (3.13.0-1) ...
349s Setting up fonts-urw-base35 (20200910-8) ...
349s Setting up libcairo2:arm64 (1.18.2-2) ...
349s Setting up python3.13-tk (3.13.2-2) ...
349s Setting up python3-pil:arm64 (11.1.0-5build1) ...
350s Setting up python3-pandas (2.2.3+dfsg-8build1) ...
354s Setting up python3-h5py (3.13.0-1) ...
355s Setting up python3-sklearn (1.4.2+dfsg-8) ...
357s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ...
357s Setting up python3-cairo (1.26.1-2build2) ...
357s Setting up blt (2.5.3+dfsg-8) ...
357s Setting up python3-tk:arm64 (3.13.1-1) ...
357s Setting up python3-pil.imagetk:arm64 (11.1.0-5build1) ...
357s Setting up python3-rlpycairo (0.3.0-3) ...
357s Setting up python3-reportlab (4.3.1-1) ...
358s Setting up python3-fonttools (4.55.3-2build1) ...
358s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ...
359s Setting up python3-matplotlib (3.8.3-7build1) ...
360s Setting up python3-seaborn (0.13.2-4.1) ...
361s Processing triggers for man-db (2.13.0-1) ...
362s Processing triggers for libc-bin (2.41-1ubuntu1) ...
362s Processing triggers for sgml-base (1.31) ...
362s Setting up w3c-sgml-lib (1.3-3) ...
389s Setting up python3-biopython (1.85+dfsg-2build1) ...
390s Setting up mcaller (1.0.3+git20210624.b415090-3) ...
392s autopkgtest [01:33:32]: test run-unit-test: [-----------------------
393s testdata/
393s 1 contigs
393s 1 threads
393s thread finished processing...:
393s 35 observations
393s 35 positions
393s 0 regions with multiple methylated bases
393s 0 observations with skips included
393s 8 observations with too many skips
393s Finished extracting signals
394s testdata/
394s 1 contigs
394s 1 threads
394s thread finished processing...:
394s 9 observations
394s 9 positions
394s 0 regions with multiple methylated bases
394s 0 observations with skips included
394s 2 observations with too many skips
394s Finished extracting signals
395s testdata/
395s 1 contigs
395s 4 threads
395s thread finished processing...:
395s 9 observations
395s 9 positions
395s 0 regions with multiple methylated bases
395s 0 observations with skips included
395s 4 observations with too many skips
396s thread finished processing...:
396s 28 observations
396s 28 positions
396s 0 regions with multiple methylated bases
396s 0 observations with skips included
396s 6 observations with too many skips
396s Error: could not find sequence for reference contig li
396s thread finished processing...:
396s 16 observations
396s 16 positions
396s 0 regions with multiple methylated bases
396s 0 observations with skips included
396s 6 observations with too many skips
396s thread finished processing...:
396s 44 observations
396s 44 positions
396s 1 regions with multiple methylated bases
396s 0 observations with skips included
396s 10 observations with too many skips
396s Finished extracting signals
396s Merging files...
396s Training...
396s ['A', 'A', 'A', 'A', 'A', 'A', 'A', 'A', 'A', 'A']
396s [[np.float64(-0.18999999999999992), np.float64(-1.6799999999999997), np.float64(-2.3), np.float64(0.56), np.float64(-1.41), np.float64(1.48), np.float64(7.055265349382997)], [np.float64(-1.1300000000000001), np.float64(-1.67), np.float64(-1.1), np.float64(-0.5774999999999999), np.float64(0.42), np.float64(1.0225), np.float64(7.055265349382997)], [np.float64(0.0050000000000000044), np.float64(-0.29500000000000004), np.float64(-0.54), np.float64(3.96), np.float64(1.47), np.float64(0.06499999999999995), np.float64(7.055265349382997)], [np.float64(3.255), np.float64(3.925), np.float64(0.03999999999999998), np.float64(-0.15599999999999997), np.float64(-1.01), np.float64(1.3533333333333333), np.float64(7.055265349382997)], [np.float64(-0.07999999999999996), np.float64(-1.3666666666666665), np.float64(0.84), np.float64(-0.5449999999999999), np.float64(-3.22), np.float64(-1.53), np.float64(7.055265349382997)], [np.float64(-1.74), np.float64(-2.56), np.float64(-2.0774999999999997), np.float64(1.84), np.float64(-0.09999999999999998), np.float64(-0.3), np.float64(7.055265349382997)], [np.float64(1.92), np.float64(2.75), np.float64(1.59), np.float64(1.6433333333333333), np.float64(1.59), np.float64(1.27), np.float64(7.055265349382997)], [np.float64(-1.44), np.float64(-5.03), np.float64(1.4449999999999998), np.float64(0.4000000000000001), np.float64(-0.588), np.float64(-0.55), np.float64(7.055265349382997)], [np.float64(-1.4433333333333334), np.float64(-0.020000000000000018), np.float64(-0.0366666666666667), np.float64(-0.5499999999999999), np.float64(0.64), np.float64(-2.71), np.float64(7.055265349382997)], [np.float64(-1.23), np.float64(-1.635), np.float64(-0.24), np.float64(1.1033333333333333), np.float64(-2.215), np.float64(-2.93), np.float64(7.055265349382997)]]
396s ['GGATTMTTTCA', 'CTGGAMAAAGC', 'GGGCCMTTACC', 'GGTGGMTGAAT', 'GGTTAMCGCGT', 'TGTGGMGAAAC', 'AGAACMCTTTC', 'AAATGMGATTT', 'AGTAGMTTGAT', 'ACTTAMCCGGT']
396s NN general model scores: 0.875,0.5,0.5,1.0,0.5
396s Cross validation accuracy: 0.68 (+/- 0.44)
396s Finished training
396s PASS
397s autopkgtest [01:33:37]: test run-unit-test: -----------------------]
397s autopkgtest [01:33:37]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
397s run-unit-test        PASS
398s autopkgtest [01:33:38]: @@@@@@@@@@@@@@@@@@@@ summary
398s run-unit-test        PASS
416s nova [W] Using flock in prodstack6-arm64
416s flock: timeout while waiting to get lock
416s Creating nova instance adt-plucky-arm64-mcaller-20250316-012659-juju-7f2275-prod-proposed-migration-environment-2-3364a6d1-d7fb-4fc4-b405-e7e281e37b54 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)...
416s nova [W] Timed out waiting for bc6e9db9-7778-437e-9b5a-17f2c86b5583 to get deleted.