0s autopkgtest [14:37:07]: starting date and time: 2024-12-04 14:37:07+0000
  0s autopkgtest [14:37:07]: git checkout: 48af33f0 Fix --add-apt-source=ppa for focal
  0s autopkgtest [14:37:07]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._b77525a/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:h5py,src:openmpi --apt-upgrade mcaller --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=h5py/3.11.0-8ubuntu3 openmpi/5.0.6-3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-33.secgroup --name adt-plucky-arm64-mcaller-20241204-143706-juju-7f2275-prod-proposed-migration-environment-2-ebcb05f1-123d-4e74-b0b5-de9544539045 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
235s autopkgtest [14:41:02]: testbed dpkg architecture: arm64
235s autopkgtest [14:41:02]: testbed apt version: 2.9.16
236s autopkgtest [14:41:03]: @@@@@@@@@@@@@@@@@@@@ test bed setup
237s autopkgtest [14:41:04]: testbed release detected to be: None
238s autopkgtest [14:41:05]: updating testbed package index (apt update)
238s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
239s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
239s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
239s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
239s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.2 kB]
239s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [745 kB]
239s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B]
239s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [58.3 kB]
239s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [125 kB]
239s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [58.2 kB]
239s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [617 kB]
239s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [20.8 kB]
239s Fetched 1721 kB in 1s (1822 kB/s)
240s Reading package lists...
241s Reading package lists...
242s Building dependency tree...
242s Reading state information...
243s Calculating upgrade...
244s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
244s Reading package lists...
244s Building dependency tree...
244s Reading state information...
245s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
245s autopkgtest [14:41:12]: upgrading testbed (apt dist-upgrade and autopurge)
245s Reading package lists...
246s Building dependency tree...
246s Reading state information...
246s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
246s Starting 2 pkgProblemResolver with broken count: 0
246s Done
247s Entering ResolveByKeep
247s 
248s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
248s Reading package lists...
248s Building dependency tree...
248s Reading state information...
249s Starting pkgProblemResolver with broken count: 0
249s Starting 2 pkgProblemResolver with broken count: 0
249s Done
249s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
252s autopkgtest [14:41:19]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024
253s autopkgtest [14:41:20]: @@@@@@@@@@@@@@@@@@@@ apt-source mcaller
255s Get:1 http://ftpmaster.internal/ubuntu plucky/universe mcaller 1.0.3+git20210624.b415090-3 (dsc) [2372 B]
255s Get:2 http://ftpmaster.internal/ubuntu plucky/universe mcaller 1.0.3+git20210624.b415090-3 (tar) [6613 kB]
255s Get:3 http://ftpmaster.internal/ubuntu plucky/universe mcaller 1.0.3+git20210624.b415090-3 (diff) [7488 B]
255s gpgv: Signature made Wed Apr 27 22:26:52 2022 UTC
255s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
255s gpgv:                issuer "emollier@debian.org"
255s gpgv: Can't check signature: No public key
255s dpkg-source: warning: cannot verify inline signature for ./mcaller_1.0.3+git20210624.b415090-3.dsc: no acceptable signature found
256s autopkgtest [14:41:23]: testing package mcaller version 1.0.3+git20210624.b415090-3
256s autopkgtest [14:41:23]: build not needed
257s autopkgtest [14:41:24]: test run-unit-test: preparing testbed
257s Reading package lists...
258s Building dependency tree...
258s Reading state information...
258s Starting pkgProblemResolver with broken count: 0
258s Starting 2 pkgProblemResolver with broken count: 0
258s Done
259s The following NEW packages will be installed:
259s   blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx
259s   fonts-urw-base35 libaec0 libblas3 libcairo2 libdeflate0 libfontconfig1
259s   libfontenc1 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
259s   libhdf5-103-1t64 libhdf5-hl-100t64 libhts3t64 libhtscodecs2 libimagequant0
259s   libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3
259s   liblbfgsb0 liblcms2-2 liblerc4 liblzf1 libopenjp2-7 libpixman-1-0
259s   libqhull-r8.0 libraqm0 libsharpyuv0 libsz2 libtcl8.6 libtiff6 libtk8.6
259s   libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2
259s   libxrender1 libxslt1.1 libxss1 mcaller python-matplotlib-data
259s   python3-appdirs python3-biopython python3-brotli python3-cairo
259s   python3-contourpy python3-cycler python3-dateutil python3-decorator
259s   python3-fonttools python3-freetype python3-fs python3-h5py
259s   python3-h5py-serial python3-joblib python3-kiwisolver python3-lxml
259s   python3-lz4 python3-matplotlib python3-mpmath python3-numpy
259s   python3-packaging python3-pandas python3-pandas-lib python3-pil
259s   python3-pil.imagetk python3-pysam python3-reportlab python3-rlpycairo
259s   python3-scipy python3-seaborn python3-sklearn python3-sklearn-lib
259s   python3-sympy python3-threadpoolctl python3-tk python3-tz python3-ufolib2
259s   python3-unicodedata2 python3.12-tk python3.13-tk tk8.6-blt2.5 unicode-data
259s   w3c-sgml-lib x11-common xfonts-encodings xfonts-utils
259s 0 upgraded, 97 newly installed, 0 to remove and 0 not upgraded.
259s Need to get 102 MB of archives.
259s After this operation, 511 MB of additional disk space will be used.
259s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [987 kB]
260s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
260s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
260s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontenc1 arm64 1:1.1.8-1build1 [13.9 kB]
260s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
260s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB]
260s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 xfonts-utils arm64 1:7.7+7 [95.6 kB]
260s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-urw-base35 all 20200910-8 [11.0 MB]
260s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB]
260s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB]
260s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB]
260s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB]
260s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B]
260s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.15-1 [774 kB]
260s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7build1 [618 kB]
260s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 blt arm64 2.5.3+dfsg-7build1 [4840 B]
260s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lyx all 2.4.2.1-1 [171 kB]
260s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB]
260s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-4 [152 kB]
260s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB]
260s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB]
260s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B]
260s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB]
260s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.22-1 [46.2 kB]
260s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-9ubuntu1 [437 kB]
260s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-9ubuntu1 [145 kB]
260s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB]
260s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.0.1-1 [487 kB]
260s Get:29 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B]
260s Get:30 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4ubuntu3 [1207 kB]
260s Get:31 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4ubuntu3 [56.9 kB]
260s Get:32 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhtscodecs2 arm64 1.6.1-1 [82.5 kB]
260s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhts3t64 arm64 1.20+ds-2 [437 kB]
260s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB]
260s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB]
260s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
260s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
260s Get:38 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
260s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-4 [2305 kB]
261s Get:40 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB]
261s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB]
261s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB]
261s Get:43 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblzf1 arm64 3.6-4 [7426 B]
261s Get:44 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB]
261s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libraqm0 arm64 0.10.1-1build1 [14.7 kB]
261s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [16.3 kB]
261s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB]
261s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.4.0-0.1 [192 kB]
261s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB]
261s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [12.3 kB]
261s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpmux3 arm64 1.4.0-0.1 [25.1 kB]
261s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libxslt1.1 arm64 1.1.39-0exp1ubuntu2 [168 kB]
261s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-joblib all 1.3.2-5 [206 kB]
261s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11ubuntu1 [4149 kB]
261s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB]
261s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.13.1-5ubuntu1 [19.1 MB]
261s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-threadpoolctl all 3.1.0-1 [21.3 kB]
261s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sklearn-lib arm64 1.4.2+dfsg-6build1 [6350 kB]
261s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sklearn all 1.4.2+dfsg-6build1 [2257 kB]
262s Get:60 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 python3-h5py-serial arm64 3.11.0-8ubuntu3 [1452 kB]
262s Get:61 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 python3-h5py all 3.11.0-8ubuntu3 [7982 B]
262s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-tk arm64 3.12.7-3 [115 kB]
262s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-tk arm64 3.13.0-2 [105 kB]
262s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tk arm64 3.12.7-1 [9752 B]
262s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pil.imagetk arm64 10.4.0-1ubuntu2 [9590 B]
262s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libopenjp2-7 arm64 2.5.0-2ubuntu1 [182 kB]
262s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pil arm64 10.4.0-1ubuntu2 [473 kB]
262s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-cairo arm64 1.26.1-2build1 [139 kB]
262s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-freetype all 2.5.1-1 [92.3 kB]
262s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-rlpycairo all 0.3.0-3 [9130 B]
262s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-reportlab all 4.2.5-1 [1107 kB]
262s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 w3c-sgml-lib all 1.3-3 [280 kB]
262s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-biopython arm64 1.84+dfsg-4build1 [1694 kB]
262s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-matplotlib-data all 3.8.3-3ubuntu1 [2928 kB]
262s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-3 [80.2 kB]
262s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-contourpy arm64 1.3.0-2build1 [220 kB]
262s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-cycler all 0.12.1-1 [9716 B]
262s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-brotli arm64 1.1.0-2build3 [342 kB]
262s Get:79 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tz all 2024.1-2 [31.4 kB]
262s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-appdirs all 1.4.4-4 [10.9 kB]
262s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fs all 2.4.16-5 [90.7 kB]
262s Get:82 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-lxml arm64 5.3.0-1build1 [1591 kB]
262s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-lz4 arm64 4.0.2+dfsg-1build5 [27.5 kB]
262s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mpmath all 1.3.0-1 [425 kB]
262s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sympy all 1.13.3-1 [4228 kB]
262s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB]
262s Get:87 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-unicodedata2 arm64 15.1.0+ds-1build2 [360 kB]
262s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 unicode-data all 15.1.0-1 [8878 kB]
262s Get:89 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fonttools arm64 4.55.0-3 [1618 kB]
262s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-kiwisolver arm64 1.4.7-2build1 [62.0 kB]
262s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.2-1 [51.5 kB]
262s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-matplotlib arm64 3.8.3-3ubuntu1 [4612 kB]
263s Get:93 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas-lib arm64 2.2.3+dfsg-5ubuntu1 [6921 kB]
263s Get:94 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas all 2.2.3+dfsg-5ubuntu1 [3112 kB]
263s Get:95 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-seaborn all 0.13.2-4 [225 kB]
263s Get:96 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pysam arm64 0.22.1+ds-2build1 [3987 kB]
263s Get:97 http://ftpmaster.internal/ubuntu plucky/universe arm64 mcaller all 1.0.3+git20210624.b415090-3 [19.3 kB]
264s Fetched 102 MB in 4s (24.9 MB/s)
264s Selecting previously unselected package libtcl8.6:arm64.
264s (Reading database ... 
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(Reading database ... 80338 files and directories currently installed.)
264s Preparing to unpack .../00-libtcl8.6_8.6.15+dfsg-2_arm64.deb ...
264s Unpacking libtcl8.6:arm64 (8.6.15+dfsg-2) ...
264s Selecting previously unselected package fonts-dejavu-mono.
264s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ...
264s Unpacking fonts-dejavu-mono (2.37-8) ...
264s Selecting previously unselected package fonts-dejavu-core.
264s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ...
264s Unpacking fonts-dejavu-core (2.37-8) ...
264s Selecting previously unselected package libfontenc1:arm64.
265s Preparing to unpack .../03-libfontenc1_1%3a1.1.8-1build1_arm64.deb ...
265s Unpacking libfontenc1:arm64 (1:1.1.8-1build1) ...
265s Selecting previously unselected package x11-common.
265s Preparing to unpack .../04-x11-common_1%3a7.7+23ubuntu3_all.deb ...
265s Unpacking x11-common (1:7.7+23ubuntu3) ...
265s Selecting previously unselected package xfonts-encodings.
265s Preparing to unpack .../05-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ...
265s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ...
265s Selecting previously unselected package xfonts-utils.
265s Preparing to unpack .../06-xfonts-utils_1%3a7.7+7_arm64.deb ...
265s Unpacking xfonts-utils (1:7.7+7) ...
265s Selecting previously unselected package fonts-urw-base35.
265s Preparing to unpack .../07-fonts-urw-base35_20200910-8_all.deb ...
265s Unpacking fonts-urw-base35 (20200910-8) ...
265s Selecting previously unselected package fontconfig-config.
265s Preparing to unpack .../08-fontconfig-config_2.15.0-1.1ubuntu2_arm64.deb ...
265s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ...
265s Selecting previously unselected package libfontconfig1:arm64.
265s Preparing to unpack .../09-libfontconfig1_2.15.0-1.1ubuntu2_arm64.deb ...
265s Unpacking libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ...
265s Selecting previously unselected package libxrender1:arm64.
265s Preparing to unpack .../10-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ...
265s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ...
265s Selecting previously unselected package libxft2:arm64.
266s Preparing to unpack .../11-libxft2_2.3.6-1build1_arm64.deb ...
266s Unpacking libxft2:arm64 (2.3.6-1build1) ...
266s Selecting previously unselected package libxss1:arm64.
266s Preparing to unpack .../12-libxss1_1%3a1.2.3-1build3_arm64.deb ...
266s Unpacking libxss1:arm64 (1:1.2.3-1build3) ...
266s Selecting previously unselected package libtk8.6:arm64.
266s Preparing to unpack .../13-libtk8.6_8.6.15-1_arm64.deb ...
266s Unpacking libtk8.6:arm64 (8.6.15-1) ...
266s Selecting previously unselected package tk8.6-blt2.5.
266s Preparing to unpack .../14-tk8.6-blt2.5_2.5.3+dfsg-7build1_arm64.deb ...
266s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ...
266s Selecting previously unselected package blt.
266s Preparing to unpack .../15-blt_2.5.3+dfsg-7build1_arm64.deb ...
266s Unpacking blt (2.5.3+dfsg-7build1) ...
266s Selecting previously unselected package fonts-lyx.
266s Preparing to unpack .../16-fonts-lyx_2.4.2.1-1_all.deb ...
266s Unpacking fonts-lyx (2.4.2.1-1) ...
266s Selecting previously unselected package libaec0:arm64.
266s Preparing to unpack .../17-libaec0_1.1.3-1_arm64.deb ...
266s Unpacking libaec0:arm64 (1.1.3-1) ...
266s Selecting previously unselected package libblas3:arm64.
266s Preparing to unpack .../18-libblas3_3.12.0-4_arm64.deb ...
266s Unpacking libblas3:arm64 (3.12.0-4) ...
266s Selecting previously unselected package libpixman-1-0:arm64.
266s Preparing to unpack .../19-libpixman-1-0_0.44.0-3_arm64.deb ...
266s Unpacking libpixman-1-0:arm64 (0.44.0-3) ...
266s Selecting previously unselected package libxcb-render0:arm64.
266s Preparing to unpack .../20-libxcb-render0_1.17.0-2_arm64.deb ...
266s Unpacking libxcb-render0:arm64 (1.17.0-2) ...
266s Selecting previously unselected package libxcb-shm0:arm64.
266s Preparing to unpack .../21-libxcb-shm0_1.17.0-2_arm64.deb ...
266s Unpacking libxcb-shm0:arm64 (1.17.0-2) ...
266s Selecting previously unselected package libcairo2:arm64.
266s Preparing to unpack .../22-libcairo2_1.18.2-2_arm64.deb ...
266s Unpacking libcairo2:arm64 (1.18.2-2) ...
266s Selecting previously unselected package libdeflate0:arm64.
266s Preparing to unpack .../23-libdeflate0_1.22-1_arm64.deb ...
266s Unpacking libdeflate0:arm64 (1.22-1) ...
266s Selecting previously unselected package libgfortran5:arm64.
266s Preparing to unpack .../24-libgfortran5_14.2.0-9ubuntu1_arm64.deb ...
266s Unpacking libgfortran5:arm64 (14.2.0-9ubuntu1) ...
266s Selecting previously unselected package libgomp1:arm64.
267s Preparing to unpack .../25-libgomp1_14.2.0-9ubuntu1_arm64.deb ...
267s Unpacking libgomp1:arm64 (14.2.0-9ubuntu1) ...
267s Selecting previously unselected package libgraphite2-3:arm64.
267s Preparing to unpack .../26-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ...
267s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
267s Selecting previously unselected package libharfbuzz0b:arm64.
267s Preparing to unpack .../27-libharfbuzz0b_10.0.1-1_arm64.deb ...
267s Unpacking libharfbuzz0b:arm64 (10.0.1-1) ...
267s Selecting previously unselected package libsz2:arm64.
267s Preparing to unpack .../28-libsz2_1.1.3-1_arm64.deb ...
267s Unpacking libsz2:arm64 (1.1.3-1) ...
267s Selecting previously unselected package libhdf5-103-1t64:arm64.
267s Preparing to unpack .../29-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_arm64.deb ...
267s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ...
267s Selecting previously unselected package libhdf5-hl-100t64:arm64.
267s Preparing to unpack .../30-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_arm64.deb ...
267s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ...
267s Selecting previously unselected package libhtscodecs2:arm64.
267s Preparing to unpack .../31-libhtscodecs2_1.6.1-1_arm64.deb ...
267s Unpacking libhtscodecs2:arm64 (1.6.1-1) ...
267s Selecting previously unselected package libhts3t64:arm64.
267s Preparing to unpack .../32-libhts3t64_1.20+ds-2_arm64.deb ...
267s Unpacking libhts3t64:arm64 (1.20+ds-2) ...
267s Selecting previously unselected package libimagequant0:arm64.
267s Preparing to unpack .../33-libimagequant0_2.18.0-1build1_arm64.deb ...
267s Unpacking libimagequant0:arm64 (2.18.0-1build1) ...
267s Selecting previously unselected package libjpeg-turbo8:arm64.
267s Preparing to unpack .../34-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ...
267s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ...
267s Selecting previously unselected package libjpeg8:arm64.
267s Preparing to unpack .../35-libjpeg8_8c-2ubuntu11_arm64.deb ...
267s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
267s Selecting previously unselected package libjs-jquery.
267s Preparing to unpack .../36-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
267s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
267s Selecting previously unselected package libjs-jquery-ui.
267s Preparing to unpack .../37-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
267s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
267s Selecting previously unselected package liblapack3:arm64.
267s Preparing to unpack .../38-liblapack3_3.12.0-4_arm64.deb ...
267s Unpacking liblapack3:arm64 (3.12.0-4) ...
267s Selecting previously unselected package liblbfgsb0:arm64.
267s Preparing to unpack .../39-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ...
267s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ...
267s Selecting previously unselected package liblcms2-2:arm64.
268s Preparing to unpack .../40-liblcms2-2_2.16-2_arm64.deb ...
268s Unpacking liblcms2-2:arm64 (2.16-2) ...
268s Selecting previously unselected package liblerc4:arm64.
268s Preparing to unpack .../41-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ...
268s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
268s Selecting previously unselected package liblzf1:arm64.
268s Preparing to unpack .../42-liblzf1_3.6-4_arm64.deb ...
268s Unpacking liblzf1:arm64 (3.6-4) ...
268s Selecting previously unselected package libqhull-r8.0:arm64.
268s Preparing to unpack .../43-libqhull-r8.0_2020.2-6build1_arm64.deb ...
268s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ...
268s Selecting previously unselected package libraqm0:arm64.
268s Preparing to unpack .../44-libraqm0_0.10.1-1build1_arm64.deb ...
268s Unpacking libraqm0:arm64 (0.10.1-1build1) ...
268s Selecting previously unselected package libsharpyuv0:arm64.
268s Preparing to unpack .../45-libsharpyuv0_1.4.0-0.1_arm64.deb ...
268s Unpacking libsharpyuv0:arm64 (1.4.0-0.1) ...
268s Selecting previously unselected package libjbig0:arm64.
268s Preparing to unpack .../46-libjbig0_2.1-6.1ubuntu2_arm64.deb ...
268s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ...
268s Selecting previously unselected package libwebp7:arm64.
268s Preparing to unpack .../47-libwebp7_1.4.0-0.1_arm64.deb ...
268s Unpacking libwebp7:arm64 (1.4.0-0.1) ...
268s Selecting previously unselected package libtiff6:arm64.
268s Preparing to unpack .../48-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ...
268s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ...
268s Selecting previously unselected package libwebpdemux2:arm64.
268s Preparing to unpack .../49-libwebpdemux2_1.4.0-0.1_arm64.deb ...
268s Unpacking libwebpdemux2:arm64 (1.4.0-0.1) ...
268s Selecting previously unselected package libwebpmux3:arm64.
268s Preparing to unpack .../50-libwebpmux3_1.4.0-0.1_arm64.deb ...
268s Unpacking libwebpmux3:arm64 (1.4.0-0.1) ...
268s Selecting previously unselected package libxslt1.1:arm64.
268s Preparing to unpack .../51-libxslt1.1_1.1.39-0exp1ubuntu2_arm64.deb ...
268s Unpacking libxslt1.1:arm64 (1.1.39-0exp1ubuntu2) ...
268s Selecting previously unselected package python3-joblib.
268s Preparing to unpack .../52-python3-joblib_1.3.2-5_all.deb ...
268s Unpacking python3-joblib (1.3.2-5) ...
268s Selecting previously unselected package python3-numpy.
268s Preparing to unpack .../53-python3-numpy_1%3a1.26.4+ds-11ubuntu1_arm64.deb ...
268s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ...
268s Selecting previously unselected package python3-decorator.
268s Preparing to unpack .../54-python3-decorator_5.1.1-5_all.deb ...
268s Unpacking python3-decorator (5.1.1-5) ...
268s Selecting previously unselected package python3-scipy.
268s Preparing to unpack .../55-python3-scipy_1.13.1-5ubuntu1_arm64.deb ...
268s Unpacking python3-scipy (1.13.1-5ubuntu1) ...
269s Selecting previously unselected package python3-threadpoolctl.
269s Preparing to unpack .../56-python3-threadpoolctl_3.1.0-1_all.deb ...
269s Unpacking python3-threadpoolctl (3.1.0-1) ...
269s Selecting previously unselected package python3-sklearn-lib:arm64.
269s Preparing to unpack .../57-python3-sklearn-lib_1.4.2+dfsg-6build1_arm64.deb ...
269s Unpacking python3-sklearn-lib:arm64 (1.4.2+dfsg-6build1) ...
269s Selecting previously unselected package python3-sklearn.
269s Preparing to unpack .../58-python3-sklearn_1.4.2+dfsg-6build1_all.deb ...
269s Unpacking python3-sklearn (1.4.2+dfsg-6build1) ...
269s Selecting previously unselected package python3-h5py-serial.
269s Preparing to unpack .../59-python3-h5py-serial_3.11.0-8ubuntu3_arm64.deb ...
269s Unpacking python3-h5py-serial (3.11.0-8ubuntu3) ...
270s Selecting previously unselected package python3-h5py.
270s Preparing to unpack .../60-python3-h5py_3.11.0-8ubuntu3_all.deb ...
270s Unpacking python3-h5py (3.11.0-8ubuntu3) ...
270s Selecting previously unselected package python3.12-tk.
270s Preparing to unpack .../61-python3.12-tk_3.12.7-3_arm64.deb ...
270s Unpacking python3.12-tk (3.12.7-3) ...
270s Selecting previously unselected package python3.13-tk.
270s Preparing to unpack .../62-python3.13-tk_3.13.0-2_arm64.deb ...
270s Unpacking python3.13-tk (3.13.0-2) ...
270s Selecting previously unselected package python3-tk:arm64.
270s Preparing to unpack .../63-python3-tk_3.12.7-1_arm64.deb ...
270s Unpacking python3-tk:arm64 (3.12.7-1) ...
270s Selecting previously unselected package python3-pil.imagetk:arm64.
270s Preparing to unpack .../64-python3-pil.imagetk_10.4.0-1ubuntu2_arm64.deb ...
270s Unpacking python3-pil.imagetk:arm64 (10.4.0-1ubuntu2) ...
270s Selecting previously unselected package libopenjp2-7:arm64.
270s Preparing to unpack .../65-libopenjp2-7_2.5.0-2ubuntu1_arm64.deb ...
270s Unpacking libopenjp2-7:arm64 (2.5.0-2ubuntu1) ...
270s Selecting previously unselected package python3-pil:arm64.
270s Preparing to unpack .../66-python3-pil_10.4.0-1ubuntu2_arm64.deb ...
270s Unpacking python3-pil:arm64 (10.4.0-1ubuntu2) ...
270s Selecting previously unselected package python3-cairo.
270s Preparing to unpack .../67-python3-cairo_1.26.1-2build1_arm64.deb ...
270s Unpacking python3-cairo (1.26.1-2build1) ...
270s Selecting previously unselected package python3-freetype.
270s Preparing to unpack .../68-python3-freetype_2.5.1-1_all.deb ...
270s Unpacking python3-freetype (2.5.1-1) ...
270s Selecting previously unselected package python3-rlpycairo.
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270s Unpacking python3-rlpycairo (0.3.0-3) ...
270s Selecting previously unselected package python3-reportlab.
270s Preparing to unpack .../70-python3-reportlab_4.2.5-1_all.deb ...
270s Unpacking python3-reportlab (4.2.5-1) ...
270s Selecting previously unselected package w3c-sgml-lib.
270s Preparing to unpack .../71-w3c-sgml-lib_1.3-3_all.deb ...
270s Unpacking w3c-sgml-lib (1.3-3) ...
270s Selecting previously unselected package python3-biopython.
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270s Unpacking python3-biopython (1.84+dfsg-4build1) ...
270s Selecting previously unselected package python-matplotlib-data.
271s Preparing to unpack .../73-python-matplotlib-data_3.8.3-3ubuntu1_all.deb ...
271s Unpacking python-matplotlib-data (3.8.3-3ubuntu1) ...
271s Selecting previously unselected package python3-dateutil.
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271s Unpacking python3-dateutil (2.9.0-3) ...
271s Selecting previously unselected package python3-contourpy.
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271s Unpacking python3-contourpy (1.3.0-2build1) ...
271s Selecting previously unselected package python3-cycler.
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271s Unpacking python3-cycler (0.12.1-1) ...
271s Selecting previously unselected package python3-brotli.
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271s Unpacking python3-brotli (1.1.0-2build3) ...
271s Selecting previously unselected package python3-tz.
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271s Unpacking python3-tz (2024.1-2) ...
271s Selecting previously unselected package python3-appdirs.
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271s Unpacking python3-appdirs (1.4.4-4) ...
271s Selecting previously unselected package python3-fs.
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271s Unpacking python3-fs (2.4.16-5) ...
271s Selecting previously unselected package python3-lxml:arm64.
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271s Unpacking python3-lxml:arm64 (5.3.0-1build1) ...
271s Selecting previously unselected package python3-lz4.
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271s Unpacking python3-lz4 (4.0.2+dfsg-1build5) ...
271s Selecting previously unselected package python3-mpmath.
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271s Selecting previously unselected package python3-sympy.
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272s Selecting previously unselected package python3-ufolib2.
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272s Unpacking python3-ufolib2 (0.17.0+dfsg1-1) ...
272s Selecting previously unselected package python3-unicodedata2.
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272s Unpacking python3-unicodedata2 (15.1.0+ds-1build2) ...
272s Selecting previously unselected package unicode-data.
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272s Unpacking unicode-data (15.1.0-1) ...
272s Selecting previously unselected package python3-fonttools.
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272s Selecting previously unselected package python3-kiwisolver.
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273s Selecting previously unselected package python3-matplotlib.
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273s Selecting previously unselected package python3-pandas-lib:arm64.
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273s Unpacking python3-pandas-lib:arm64 (2.2.3+dfsg-5ubuntu1) ...
273s Selecting previously unselected package python3-pandas.
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273s Selecting previously unselected package python3-seaborn.
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273s Selecting previously unselected package python3-pysam.
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273s Unpacking python3-pysam (0.22.1+ds-2build1) ...
274s Selecting previously unselected package mcaller.
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274s Unpacking mcaller (1.0.3+git20210624.b415090-3) ...
274s Setting up libhtscodecs2:arm64 (1.6.1-1) ...
274s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
274s Setting up liblcms2-2:arm64 (2.16-2) ...
274s Setting up libpixman-1-0:arm64 (0.44.0-3) ...
274s Setting up libsharpyuv0:arm64 (1.4.0-0.1) ...
274s Setting up w3c-sgml-lib (1.3-3) ...
307s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
307s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ...
307s Setting up python3-joblib (1.3.2-5) ...
307s Setting up python3-lz4 (4.0.2+dfsg-1build5) ...
307s Setting up libxcb-render0:arm64 (1.17.0-2) ...
307s Setting up python3-unicodedata2 (15.1.0+ds-1build2) ...
307s Setting up fonts-lyx (2.4.2.1-1) ...
307s Setting up python3-threadpoolctl (3.1.0-1) ...
308s Setting up x11-common (1:7.7+23ubuntu3) ...
308s Setting up libdeflate0:arm64 (1.22-1) ...
308s Setting up libqhull-r8.0:arm64 (2020.2-6build1) ...
308s Setting up libxcb-shm0:arm64 (1.17.0-2) ...
308s Setting up libgomp1:arm64 (14.2.0-9ubuntu1) ...
308s Setting up python3-freetype (2.5.1-1) ...
308s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ...
308s Setting up libaec0:arm64 (1.1.3-1) ...
308s Setting up python3-tz (2024.1-2) ...
308s Setting up unicode-data (15.1.0-1) ...
308s Setting up python3-decorator (5.1.1-5) ...
309s Setting up libfontenc1:arm64 (1:1.1.8-1build1) ...
309s Setting up libblas3:arm64 (3.12.0-4) ...
309s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
309s Setting up python3-packaging (24.2-1) ...
309s Setting up python3-brotli (1.1.0-2build3) ...
309s Setting up liblzf1:arm64 (3.6-4) ...
309s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ...
309s Setting up python3-cycler (0.12.1-1) ...
309s Setting up libimagequant0:arm64 (2.18.0-1build1) ...
309s Setting up fonts-dejavu-mono (2.37-8) ...
309s Setting up python3-kiwisolver (1.4.7-2build1) ...
309s Setting up libtcl8.6:arm64 (8.6.15+dfsg-2) ...
309s Setting up fonts-dejavu-core (2.37-8) ...
309s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ...
309s Setting up libgfortran5:arm64 (14.2.0-9ubuntu1) ...
309s Setting up libwebp7:arm64 (1.4.0-0.1) ...
309s Setting up libxslt1.1:arm64 (1.1.39-0exp1ubuntu2) ...
309s Setting up libhts3t64:arm64 (1.20+ds-2) ...
309s Setting up libopenjp2-7:arm64 (2.5.0-2ubuntu1) ...
309s Setting up libharfbuzz0b:arm64 (10.0.1-1) ...
309s Setting up python3-dateutil (2.9.0-3) ...
310s Setting up libxss1:arm64 (1:1.2.3-1build3) ...
310s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
310s Setting up python3-mpmath (1.3.0-1) ...
310s Setting up python-matplotlib-data (3.8.3-3ubuntu1) ...
310s Setting up libwebpmux3:arm64 (1.4.0-0.1) ...
310s Setting up python3-appdirs (1.4.4-4) ...
310s Setting up libsz2:arm64 (1.1.3-1) ...
310s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
310s Setting up python3-sympy (1.13.3-1) ...
318s Setting up liblapack3:arm64 (3.12.0-4) ...
319s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
319s Setting up python3-pysam (0.22.1+ds-2build1) ...
319s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ...
319s Setting up libwebpdemux2:arm64 (1.4.0-0.1) ...
319s Setting up xfonts-utils (1:7.7+7) ...
319s Setting up python3-fs (2.4.16-5) ...
319s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
319s Setting up libraqm0:arm64 (0.10.1-1build1) ...
319s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ...
322s Setting up python3-lxml:arm64 (5.3.0-1build1) ...
322s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ...
322s Setting up python3-contourpy (1.3.0-2build1) ...
322s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ...
322s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ...
322s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ...
322s Setting up python3-scipy (1.13.1-5ubuntu1) ...
326s Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-5ubuntu1) ...
326s Setting up python3-sklearn-lib:arm64 (1.4.2+dfsg-6build1) ...
326s Setting up python3-h5py-serial (3.11.0-8ubuntu3) ...
326s Setting up fonts-urw-base35 (20200910-8) ...
327s Setting up python3-pil:arm64 (10.4.0-1ubuntu2) ...
327s Setting up python3-pandas (2.2.3+dfsg-5ubuntu1) ...
333s Setting up python3-h5py (3.11.0-8ubuntu3) ...
333s Setting up python3-sklearn (1.4.2+dfsg-6build1) ...
336s Setting up python3-fonttools (4.55.0-3) ...
337s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ...
337s Processing triggers for sgml-base (1.31) ...
337s Setting up libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ...
337s Setting up libxft2:arm64 (2.3.6-1build1) ...
337s Setting up libtk8.6:arm64 (8.6.15-1) ...
337s Processing triggers for libc-bin (2.40-1ubuntu3) ...
337s Setting up python3.12-tk (3.12.7-3) ...
337s Processing triggers for man-db (2.13.0-1) ...
339s Setting up libcairo2:arm64 (1.18.2-2) ...
339s Setting up python3.13-tk (3.13.0-2) ...
339s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ...
339s Setting up python3-cairo (1.26.1-2build1) ...
339s Setting up blt (2.5.3+dfsg-7build1) ...
339s Setting up python3-tk:arm64 (3.12.7-1) ...
339s Setting up python3-pil.imagetk:arm64 (10.4.0-1ubuntu2) ...
339s Setting up python3-rlpycairo (0.3.0-3) ...
339s Setting up python3-reportlab (4.2.5-1) ...
340s Setting up python3-biopython (1.84+dfsg-4build1) ...
342s Setting up python3-matplotlib (3.8.3-3ubuntu1) ...
343s Setting up python3-seaborn (0.13.2-4) ...
344s Setting up mcaller (1.0.3+git20210624.b415090-3) ...
344s Processing triggers for libc-bin (2.40-1ubuntu3) ...
345s autopkgtest [14:42:52]: test run-unit-test: [-----------------------
346s testdata/
346s 1 contigs
346s 1 threads
346s thread finished processing...:
346s 35 observations
346s 35 positions
346s 0 regions with multiple methylated bases
346s 0 observations with skips included
346s 8 observations with too many skips
346s Finished extracting signals
348s testdata/
348s 1 contigs
348s 1 threads
348s thread finished processing...:
348s 9 observations
348s 9 positions
348s 0 regions with multiple methylated bases
348s 0 observations with skips included
348s 2 observations with too many skips
348s Finished extracting signals
349s testdata/
349s 1 contigs
349s 4 threads
349s thread finished processing...:
349s 9 observations
349s 9 positions
349s 0 regions with multiple methylated bases
349s 0 observations with skips included
349s 4 observations with too many skips
349s thread finished processing...:
349s 28 observations
349s 28 positions
349s 0 regions with multiple methylated bases
349s 0 observations with skips included
349s 6 observations with too many skips
349s Error: could not find sequence for reference contig li
349s thread finished processing...:
349s 16 observations
349s 16 positions
349s 0 regions with multiple methylated bases
349s 0 observations with skips included
349s 6 observations with too many skips
349s thread finished processing...:
349s 44 observations
349s 44 positions
349s 1 regions with multiple methylated bases
349s 0 observations with skips included
349s 10 observations with too many skips
350s Finished extracting signals
350s Merging files...
350s Training...
350s ['A', 'A', 'A', 'A', 'A', 'A', 'A', 'A', 'A', 'A']
350s [[-0.18999999999999992, -1.6799999999999997, -2.3, 0.56, -1.41, 1.48, 7.055265349382997], [-1.1300000000000001, -1.67, -1.1, -0.5774999999999999, 0.42, 1.0225, 7.055265349382997], [0.0050000000000000044, -0.29500000000000004, -0.54, 3.96, 1.47, 0.06499999999999995, 7.055265349382997], [3.255, 3.925, 0.03999999999999998, -0.15599999999999997, -1.01, 1.3533333333333333, 7.055265349382997], [-0.07999999999999996, -1.3666666666666665, 0.84, -0.5449999999999999, -3.22, -1.53, 7.055265349382997], [-1.74, -2.56, -2.0774999999999997, 1.84, -0.09999999999999998, -0.3, 7.055265349382997], [1.92, 2.75, 1.59, 1.6433333333333333, 1.59, 1.27, 7.055265349382997], [-1.44, -5.03, 1.4449999999999998, 0.4000000000000001, -0.588, -0.55, 7.055265349382997], [-1.4433333333333334, -0.020000000000000018, -0.0366666666666667, -0.5499999999999999, 0.64, -2.71, 7.055265349382997], [-1.23, -1.635, -0.24, 1.1033333333333333, -2.215, -2.93, 7.055265349382997]]
350s ['GGATTMTTTCA', 'CTGGAMAAAGC', 'GGGCCMTTACC', 'GGTGGMTGAAT', 'GGTTAMCGCGT', 'TGTGGMGAAAC', 'AGAACMCTTTC', 'AAATGMGATTT', 'AGTAGMTTGAT', 'ACTTAMCCGGT']
350s NN general model scores: 0.875,0.5,0.5,1.0,0.5
350s Cross validation accuracy: 0.68 (+/- 0.44)
350s Finished training
350s PASS
350s autopkgtest [14:42:57]: test run-unit-test: -----------------------]
351s run-unit-test        PASS
351s autopkgtest [14:42:58]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
351s autopkgtest [14:42:58]: @@@@@@@@@@@@@@@@@@@@ summary
351s run-unit-test        PASS
365s nova [W] Using flock in prodstack6-arm64
365s flock: timeout while waiting to get lock
365s Creating nova instance adt-plucky-arm64-mcaller-20241204-143706-juju-7f2275-prod-proposed-migration-environment-2-ebcb05f1-123d-4e74-b0b5-de9544539045 from image adt/ubuntu-plucky-arm64-server-20241204.img (UUID b1e2b1c6-409a-4f80-af2b-468b6b2bbda4)...