0s autopkgtest [09:58:22]: starting date and time: 2025-01-08 09:58:22+0000 0s autopkgtest [09:58:22]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [09:58:22]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.fsdz6e_s/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:sphinx --apt-upgrade mash --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sphinx/8.1.3-4 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-27.secgroup --name adt-plucky-arm64-mash-20250108-095822-juju-7f2275-prod-proposed-migration-environment-15-4078305e-1d65-4761-9c65-7fdd9e1ecea6 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 125s autopkgtest [10:00:27]: testbed dpkg architecture: arm64 125s autopkgtest [10:00:27]: testbed apt version: 2.9.18 125s autopkgtest [10:00:27]: @@@@@@@@@@@@@@@@@@@@ test bed setup 125s autopkgtest [10:00:27]: testbed release detected to be: None 126s autopkgtest [10:00:28]: updating testbed package index (apt update) 127s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 127s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 127s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 127s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 127s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [818 kB] 127s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 127s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [129 kB] 127s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.3 kB] 127s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [260 kB] 127s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [57.8 kB] 127s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [1010 kB] 129s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [22.8 kB] 129s Fetched 2398 kB in 1s (2335 kB/s) 129s Reading package lists... 129s Reading package lists... 129s Building dependency tree... 129s Reading state information... 130s Calculating upgrade... 131s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 131s Reading package lists... 131s Building dependency tree... 131s Reading state information... 132s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 132s autopkgtest [10:00:34]: upgrading testbed (apt dist-upgrade and autopurge) 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 133s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 133s Starting 2 pkgProblemResolver with broken count: 0 133s Done 134s Entering ResolveByKeep 134s 135s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 135s Reading package lists... 135s Building dependency tree... 135s Reading state information... 136s Starting pkgProblemResolver with broken count: 0 136s Starting 2 pkgProblemResolver with broken count: 0 136s Done 137s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 139s autopkgtest [10:00:41]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 140s autopkgtest [10:00:42]: @@@@@@@@@@@@@@@@@@@@ apt-source mash 143s Get:1 http://ftpmaster.internal/ubuntu plucky/universe mash 2.3+dfsg-6build1 (dsc) [2400 B] 143s Get:2 http://ftpmaster.internal/ubuntu plucky/universe mash 2.3+dfsg-6build1 (tar) [3449 kB] 143s Get:3 http://ftpmaster.internal/ubuntu plucky/universe mash 2.3+dfsg-6build1 (diff) [2158 kB] 144s gpgv: Signature made Tue Jul 30 06:46:31 2024 UTC 144s gpgv: using RSA key 92978A6E195E4921825F7FF0F34F09744E9F5DD9 144s gpgv: Can't check signature: No public key 144s dpkg-source: warning: cannot verify inline signature for ./mash_2.3+dfsg-6build1.dsc: no acceptable signature found 144s autopkgtest [10:00:46]: testing package mash version 2.3+dfsg-6build1 145s autopkgtest [10:00:47]: build not needed 146s autopkgtest [10:00:48]: test run-example: preparing testbed 147s Reading package lists... 147s Building dependency tree... 147s Reading state information... 147s Starting pkgProblemResolver with broken count: 0 148s Starting 2 pkgProblemResolver with broken count: 0 148s Done 148s The following NEW packages will be installed: 148s libcapnp-1.0.1 libgsl28 libgslcblas0 libmurmurhash2 mash 149s 0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. 149s Need to get 2557 kB of archives. 149s After this operation, 8861 kB of additional disk space will be used. 149s Get:1 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcapnp-1.0.1 arm64 1.0.1-4 [1332 kB] 149s Get:2 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgslcblas0 arm64 2.8+dfsg-5 [87.3 kB] 149s Get:3 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgsl28 arm64 2.8+dfsg-5 [983 kB] 149s Get:4 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmurmurhash2 arm64 1.6-1 [6098 B] 149s Get:5 http://ftpmaster.internal/ubuntu plucky/universe arm64 mash arm64 2.3+dfsg-6build1 [149 kB] 150s Fetched 2557 kB in 1s (3720 kB/s) 150s Selecting previously unselected package libcapnp-1.0.1:arm64. 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80185 files and directories currently installed.) 150s Preparing to unpack .../libcapnp-1.0.1_1.0.1-4_arm64.deb ... 150s Unpacking libcapnp-1.0.1:arm64 (1.0.1-4) ... 150s Selecting previously unselected package libgslcblas0:arm64. 150s Preparing to unpack .../libgslcblas0_2.8+dfsg-5_arm64.deb ... 150s Unpacking libgslcblas0:arm64 (2.8+dfsg-5) ... 150s Selecting previously unselected package libgsl28:arm64. 150s Preparing to unpack .../libgsl28_2.8+dfsg-5_arm64.deb ... 150s Unpacking libgsl28:arm64 (2.8+dfsg-5) ... 150s Selecting previously unselected package libmurmurhash2:arm64. 150s Preparing to unpack .../libmurmurhash2_1.6-1_arm64.deb ... 150s Unpacking libmurmurhash2:arm64 (1.6-1) ... 150s Selecting previously unselected package mash. 150s Preparing to unpack .../mash_2.3+dfsg-6build1_arm64.deb ... 150s Unpacking mash (2.3+dfsg-6build1) ... 150s Setting up libgslcblas0:arm64 (2.8+dfsg-5) ... 150s Setting up libmurmurhash2:arm64 (1.6-1) ... 150s Setting up libcapnp-1.0.1:arm64 (1.0.1-4) ... 150s Setting up libgsl28:arm64 (2.8+dfsg-5) ... 150s Setting up mash (2.3+dfsg-6build1) ... 150s Processing triggers for man-db (2.13.0-1) ... 151s Processing triggers for libc-bin (2.40-4ubuntu1) ... 152s autopkgtest [10:00:54]: test run-example: [----------------------- 152s genome1.fna 152s genome2.fna 152s genome3.fna 153s Sketching genome1.fna (provide sketch file made with "mash sketch" to skip)...done. 153s genome1.fna genome2.fna 0.0222766 0 456/1000 153s Sketching genome1.fna... 153s Writing to genome1.fna.msh... 153s Sketching genome2.fna... 153s Writing to genome2.fna.msh... 153s genome1.fna genome2.fna 0.0222766 0 456/1000 153s Sketching genome1.fna... 153s Sketching genome2.fna... 154s Writing to reference.msh... 154s Header: 154s Hash function (seed): MurmurHash3_x64_128 (42) 154s K-mer size: 21 (64-bit hashes) 154s Alphabet: ACGT (canonical) 154s Target min-hashes per sketch: 1000 154s Sketches: 2 154s 154s Sketches: 154s [Hashes] [Length] [ID] [Comment] 154s 154s 1000 4639675 genome1.fna gi|49175990|ref|NC_000913.2| Escherichia coli str. K-12 substr. MG1655, complete genome 154s 154s 1000 5498450 genome2.fna gi|47118301|dbj|BA000007.2| Escherichia coli O157:H7 str. Sakai DNA, complete genome 154s 154s genome1.fna genome3.fna 0 0 1000/1000 154s genome2.fna genome3.fna 0.0222766 0 456/1000 154s autopkgtest [10:00:56]: test run-example: -----------------------] 155s run-example PASS 155s autopkgtest [10:00:57]: test run-example: - - - - - - - - - - results - - - - - - - - - - 155s autopkgtest [10:00:57]: @@@@@@@@@@@@@@@@@@@@ summary 155s run-example PASS 173s nova [W] Using flock in prodstack6-arm64 173s Creating nova instance adt-plucky-arm64-mash-20250108-095822-juju-7f2275-prod-proposed-migration-environment-15-4078305e-1d65-4761-9c65-7fdd9e1ecea6 from image adt/ubuntu-plucky-arm64-server-20250108.img (UUID 053f5e9f-d810-4aac-9e57-cf8ac63865d2)... 173s nova [W] Timed out waiting for b01de3fe-2491-4a65-abf2-51302cf37e63 to get deleted.