0s autopkgtest [06:06:39]: starting date and time: 2025-02-16 06:06:39+0000
  0s autopkgtest [06:06:39]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [06:06:39]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.3hpkp21a/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc,src:iproute2,src:php-twig,src:postgresql-17,src:postgresql-common,src:roundcube --apt-upgrade libvcflib --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu1 iproute2/6.13.0-1ubuntu1 php-twig/3.19.0-1 postgresql-17/17.3-2 postgresql-common/273 roundcube/1.6.10+dfsg-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-30.secgroup --name adt-plucky-arm64-libvcflib-20250216-060639-juju-7f2275-prod-proposed-migration-environment-20-7cd3537f-3c9a-4aba-b062-013fc95c0fd0 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
288s autopkgtest [06:11:27]: testbed dpkg architecture: arm64
288s autopkgtest [06:11:27]: testbed apt version: 2.9.28
288s autopkgtest [06:11:27]: @@@@@@@@@@@@@@@@@@@@ test bed setup
288s autopkgtest [06:11:27]: testbed release detected to be: None
289s autopkgtest [06:11:28]: updating testbed package index (apt update)
290s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB]
290s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
290s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
290s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
290s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [72.6 kB]
290s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.1 kB]
290s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B]
290s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [801 kB]
290s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [165 kB]
290s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [7960 B]
290s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [915 kB]
290s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [10.0 kB]
291s Fetched 2098 kB in 1s (2049 kB/s)
292s Reading package lists...
292s Reading package lists...
293s Building dependency tree...
293s Reading state information...
294s Calculating upgrade...
294s The following packages will be upgraded:
294s   dash libp11-kit0 libtasn1-6 libxdmcp6
294s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
294s Need to get 433 kB of archives.
294s After this operation, 17.4 kB of additional disk space will be used.
294s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 dash arm64 0.5.12-12ubuntu1 [96.1 kB]
294s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libp11-kit0 arm64 0.25.5-2ubuntu2 [283 kB]
295s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libtasn1-6 arm64 4.20.0-2 [43.9 kB]
295s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libxdmcp6 arm64 1:1.1.5-1 [10.7 kB]
295s Preconfiguring packages ...
295s Fetched 433 kB in 1s (747 kB/s)
296s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 116609 files and directories currently installed.)
296s Preparing to unpack .../dash_0.5.12-12ubuntu1_arm64.deb ...
296s Unpacking dash (0.5.12-12ubuntu1) over (0.5.12-9ubuntu1) ...
296s Setting up dash (0.5.12-12ubuntu1) ...
296s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 116609 files and directories currently installed.)
296s Preparing to unpack .../libp11-kit0_0.25.5-2ubuntu2_arm64.deb ...
296s Unpacking libp11-kit0:arm64 (0.25.5-2ubuntu2) over (0.25.5-2ubuntu1) ...
296s Preparing to unpack .../libtasn1-6_4.20.0-2_arm64.deb ...
296s Unpacking libtasn1-6:arm64 (4.20.0-2) over (4.19.0-3build1) ...
296s Preparing to unpack .../libxdmcp6_1%3a1.1.5-1_arm64.deb ...
296s Unpacking libxdmcp6:arm64 (1:1.1.5-1) over (1:1.1.3-0ubuntu6) ...
296s Setting up libxdmcp6:arm64 (1:1.1.5-1) ...
296s Setting up libp11-kit0:arm64 (0.25.5-2ubuntu2) ...
296s Setting up libtasn1-6:arm64 (4.20.0-2) ...
296s Processing triggers for libc-bin (2.40-4ubuntu1) ...
296s Processing triggers for man-db (2.13.0-1) ...
297s Processing triggers for debianutils (5.21) ...
297s Reading package lists...
297s Building dependency tree...
297s Reading state information...
298s 0 upgraded, 0 newly installed, 0 to remove and 6 not upgraded.
298s autopkgtest [06:11:37]: upgrading testbed (apt dist-upgrade and autopurge)
298s Reading package lists...
298s Building dependency tree...
298s Reading state information...
299s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
299s Starting 2 pkgProblemResolver with broken count: 0
299s Done
300s Entering ResolveByKeep
300s 
301s The following packages will be upgraded:
301s   iproute2 libc-bin libc-dev-bin libc6 libc6-dev locales
301s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
301s Need to get 10.7 MB of archives.
301s After this operation, 358 kB of additional disk space will be used.
301s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu1 [24.0 kB]
301s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu1 [1750 kB]
302s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu1 [4246 kB]
303s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu1 [2910 kB]
303s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu1 [600 kB]
303s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 iproute2 arm64 6.13.0-1ubuntu1 [1158 kB]
304s Preconfiguring packages ...
304s Fetched 10.7 MB in 3s (4054 kB/s)
304s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 116609 files and directories currently installed.)
304s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu1_arm64.deb ...
304s Unpacking libc-dev-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ...
304s Preparing to unpack .../libc6-dev_2.41-1ubuntu1_arm64.deb ...
304s Unpacking libc6-dev:arm64 (2.41-1ubuntu1) over (2.40-4ubuntu1) ...
304s Preparing to unpack .../locales_2.41-1ubuntu1_all.deb ...
304s Unpacking locales (2.41-1ubuntu1) over (2.40-4ubuntu1) ...
304s Preparing to unpack .../libc6_2.41-1ubuntu1_arm64.deb ...
304s Checking for services that may need to be restarted...
304s Checking init scripts...
304s Checking for services that may need to be restarted...
304s Checking init scripts...
304s Stopping some services possibly affected by the upgrade (will be restarted later):
304s   cron: stopping...done.
304s 
305s Unpacking libc6:arm64 (2.41-1ubuntu1) over (2.40-4ubuntu1) ...
305s Setting up libc6:arm64 (2.41-1ubuntu1) ...
305s Checking for services that may need to be restarted...
305s Checking init scripts...
305s Restarting services possibly affected by the upgrade:
305s   cron: restarting...done.
305s 
305s Services restarted successfully.
305s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 116610 files and directories currently installed.)
305s Preparing to unpack .../libc-bin_2.41-1ubuntu1_arm64.deb ...
305s Unpacking libc-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ...
305s Setting up libc-bin (2.41-1ubuntu1) ...
305s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 116610 files and directories currently installed.)
305s Preparing to unpack .../iproute2_6.13.0-1ubuntu1_arm64.deb ...
305s Unpacking iproute2 (6.13.0-1ubuntu1) over (6.10.0-2ubuntu1) ...
306s Setting up iproute2 (6.13.0-1ubuntu1) ...
306s Setting up locales (2.41-1ubuntu1) ...
306s Installing new version of config file /etc/locale.alias ...
306s Generating locales (this might take a while)...
308s   en_US.UTF-8... done
308s Generation complete.
308s Setting up libc-dev-bin (2.41-1ubuntu1) ...
308s Setting up libc6-dev:arm64 (2.41-1ubuntu1) ...
308s Processing triggers for man-db (2.13.0-1) ...
310s Processing triggers for systemd (257.2-3ubuntu1) ...
310s Reading package lists...
311s Building dependency tree...
311s Reading state information...
311s Starting pkgProblemResolver with broken count: 0
311s Starting 2 pkgProblemResolver with broken count: 0
311s Done
312s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
314s autopkgtest [06:11:53]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Tue Feb  4 15:49:33 UTC 2025
314s autopkgtest [06:11:53]: @@@@@@@@@@@@@@@@@@@@ apt-source libvcflib
318s Get:1 http://ftpmaster.internal/ubuntu plucky/universe libvcflib 1.0.9+dfsg1-3build1 (dsc) [2651 B]
318s Get:2 http://ftpmaster.internal/ubuntu plucky/universe libvcflib 1.0.9+dfsg1-3build1 (tar) [9044 kB]
318s Get:3 http://ftpmaster.internal/ubuntu plucky/universe libvcflib 1.0.9+dfsg1-3build1 (diff) [74.2 kB]
318s gpgv: Signature made Sun Apr 14 18:02:06 2024 UTC
318s gpgv:                using RSA key AC0A4FF12611B6FCCF01C111393587D97D86500B
318s gpgv: Can't check signature: No public key
318s dpkg-source: warning: cannot verify inline signature for ./libvcflib_1.0.9+dfsg1-3build1.dsc: no acceptable signature found
319s autopkgtest [06:11:58]: testing package libvcflib version 1.0.9+dfsg1-3build1
320s autopkgtest [06:11:59]: build not needed
323s autopkgtest [06:12:02]: test command1: preparing testbed
323s Reading package lists...
324s Building dependency tree...
324s Reading state information...
324s Starting pkgProblemResolver with broken count: 0
324s Starting 2 pkgProblemResolver with broken count: 0
324s Done
325s The following NEW packages will be installed:
325s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3
325s   libcairo2 libdatrie1 libdeflate0 libdisorder0 libfastahack0 libfontconfig1
325s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhts3t64 libhtscodecs2
325s   libice6 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libpango-1.0-0
325s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0
325s   libsharpyuv0 libsm6 libsmithwaterman0 libtabixpp0t64 libtcl8.6 libthai-data
325s   libthai0 libtiff6 libtk8.6 libvcflib-tools libvcflib2 libwebp7 libwfa2-0
325s   libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 littler
325s   r-base-core r-cran-cli r-cran-colorspace r-cran-fansi r-cran-farver
325s   r-cran-ggplot2 r-cran-glue r-cran-gridbase r-cran-gtable r-cran-isoband
325s   r-cran-labeling r-cran-lattice r-cran-lifecycle r-cran-littler
325s   r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-munsell
325s   r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr
325s   r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rlang r-cran-scales
325s   r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr unzip
325s   x11-common xdg-utils zip
325s 0 upgraded, 87 newly installed, 0 to remove and 0 not upgraded.
325s Need to get 72.4 MB of archives.
325s After this operation, 147 MB of additional disk space will be used.
325s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
325s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
326s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB]
326s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB]
326s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-1.1ubuntu2 [190 kB]
326s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB]
326s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB]
326s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB]
326s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B]
326s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB]
326s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB]
326s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB]
326s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB]
326s Get:14 http://ftpmaster.internal/ubuntu plucky/universe arm64 libdisorder0 arm64 0.0.2+git20130809.8062ee1-4build1 [4604 B]
326s Get:15 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfastahack0 arm64 1.0.0+dfsg-11 [26.8 kB]
326s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-17ubuntu1 [437 kB]
326s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-17ubuntu1 [145 kB]
326s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB]
326s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB]
326s Get:20 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhtscodecs2 arm64 1.6.1-1 [82.5 kB]
326s Get:21 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhts3t64 arm64 1.21+ds-1 [441 kB]
326s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
326s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB]
326s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB]
326s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
326s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB]
326s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB]
326s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB]
326s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB]
326s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.1-1 [238 kB]
326s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.1-1 [49.6 kB]
326s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.1-1 [27.6 kB]
326s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB]
326s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB]
326s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB]
326s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB]
326s Get:37 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsmithwaterman0 arm64 0.0+git20160702.2610e25-12 [35.9 kB]
326s Get:38 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtabixpp0t64 arm64 1.1.2-2.1build1 [10.0 kB]
326s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB]
327s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB]
327s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB]
327s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB]
327s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB]
327s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B]
327s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB]
327s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 libwfa2-0 arm64 2.3.3-4 [61.3 kB]
327s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 libvcflib2 arm64 1.0.9+dfsg1-3build1 [183 kB]
327s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB]
327s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB]
327s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
327s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB]
327s Get:52 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.2-1build1 [28.4 MB]
328s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB]
328s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B]
328s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
328s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB]
328s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB]
328s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.3-1 [1347 kB]
328s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB]
328s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB]
328s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
328s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB]
328s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB]
328s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mass arm64 7.3-64-1 [1110 kB]
329s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB]
329s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-nlme arm64 3.1.167-1 [2311 kB]
329s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-2-1 [4153 kB]
329s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB]
329s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-farver arm64 2.1.2-1 [1344 kB]
329s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB]
329s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-colorspace arm64 2.1-1+dfsg-1 [1563 kB]
329s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-munsell all 0.5.1-1 [213 kB]
329s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB]
329s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
329s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB]
329s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-scales all 1.3.0-1 [603 kB]
329s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB]
329s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB]
329s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB]
329s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB]
329s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB]
329s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
329s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB]
329s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
329s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB]
329s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-gridbase all 0.4-7-5build1 [163 kB]
329s Get:87 http://ftpmaster.internal/ubuntu plucky/universe arm64 libvcflib-tools arm64 1.0.9+dfsg1-3build1 [647 kB]
330s Preconfiguring packages ...
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330s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ...
330s Unpacking fonts-dejavu-mono (2.37-8) ...
330s Selecting previously unselected package fonts-dejavu-core.
330s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ...
330s Unpacking fonts-dejavu-core (2.37-8) ...
330s Selecting previously unselected package fontconfig-config.
330s Preparing to unpack .../02-fontconfig-config_2.15.0-1.1ubuntu2_arm64.deb ...
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330s Selecting previously unselected package libfontconfig1:arm64.
330s Preparing to unpack .../03-libfontconfig1_2.15.0-1.1ubuntu2_arm64.deb ...
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330s Selecting previously unselected package libblas3:arm64.
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330s Selecting previously unselected package libcairo2:arm64.
330s Preparing to unpack .../10-libcairo2_1.18.2-2_arm64.deb ...
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330s Selecting previously unselected package libdatrie1:arm64.
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331s Selecting previously unselected package libice6:arm64.
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331s Selecting previously unselected package liblapack3:arm64.
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331s Selecting previously unselected package liblerc4:arm64.
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331s Selecting previously unselected package libpango-1.0-0:arm64.
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331s Selecting previously unselected package libpangocairo-1.0-0:arm64.
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332s Selecting previously unselected package xdg-utils.
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332s Selecting previously unselected package libxt6t64:arm64.
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333s Selecting previously unselected package r-cran-littler.
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333s Selecting previously unselected package littler.
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333s Selecting previously unselected package r-cran-pkgkitten.
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333s Selecting previously unselected package r-cran-rcpp.
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333s Selecting previously unselected package r-cran-plyr.
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333s Selecting previously unselected package r-cran-cli.
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333s Selecting previously unselected package r-cran-glue.
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333s Selecting previously unselected package r-cran-rlang.
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334s Selecting previously unselected package r-cran-lifecycle.
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334s Selecting previously unselected package r-cran-gtable.
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334s Selecting previously unselected package r-cran-isoband.
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334s Selecting previously unselected package r-cran-mass.
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334s Selecting previously unselected package r-cran-lattice.
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334s Unpacking r-cran-lattice (0.22-6-1) ...
334s Selecting previously unselected package r-cran-nlme.
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334s Unpacking r-cran-nlme (3.1.167-1) ...
334s Selecting previously unselected package r-cran-matrix.
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334s Selecting previously unselected package r-cran-mgcv.
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334s Unpacking r-cran-mgcv (1.9-1-1) ...
334s Selecting previously unselected package r-cran-farver.
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334s Unpacking r-cran-farver (2.1.2-1) ...
334s Selecting previously unselected package r-cran-labeling.
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334s Selecting previously unselected package r-cran-colorspace.
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334s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ...
334s Selecting previously unselected package r-cran-munsell.
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334s Unpacking r-cran-munsell (0.5.1-1) ...
334s Selecting previously unselected package r-cran-r6.
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334s Unpacking r-cran-r6 (2.5.1-1) ...
334s Selecting previously unselected package r-cran-rcolorbrewer.
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334s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ...
334s Selecting previously unselected package r-cran-viridislite.
334s Preparing to unpack .../74-r-cran-viridislite_0.4.2-2_all.deb ...
334s Unpacking r-cran-viridislite (0.4.2-2) ...
334s Selecting previously unselected package r-cran-scales.
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334s Unpacking r-cran-scales (1.3.0-1) ...
334s Selecting previously unselected package r-cran-fansi.
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334s Selecting previously unselected package r-cran-magrittr.
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335s Selecting previously unselected package r-cran-utf8.
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335s Unpacking r-cran-utf8 (1.2.4-1) ...
335s Selecting previously unselected package r-cran-vctrs.
335s Preparing to unpack .../79-r-cran-vctrs_0.6.5-1_arm64.deb ...
335s Unpacking r-cran-vctrs (0.6.5-1) ...
335s Selecting previously unselected package r-cran-pillar.
335s Preparing to unpack .../80-r-cran-pillar_1.10.1+dfsg-1_all.deb ...
335s Unpacking r-cran-pillar (1.10.1+dfsg-1) ...
335s Selecting previously unselected package r-cran-pkgconfig.
335s Preparing to unpack .../81-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
335s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
335s Selecting previously unselected package r-cran-tibble.
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335s Unpacking r-cran-tibble (3.2.1+dfsg-3) ...
335s Selecting previously unselected package r-cran-withr.
335s Preparing to unpack .../83-r-cran-withr_3.0.2+dfsg-1_all.deb ...
335s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
335s Selecting previously unselected package r-cran-ggplot2.
335s Preparing to unpack .../84-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ...
335s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ...
335s Selecting previously unselected package r-cran-gridbase.
335s Preparing to unpack .../85-r-cran-gridbase_0.4-7-5build1_all.deb ...
335s Unpacking r-cran-gridbase (0.4-7-5build1) ...
335s Selecting previously unselected package libvcflib-tools.
335s Preparing to unpack .../86-libvcflib-tools_1.0.9+dfsg1-3build1_arm64.deb ...
335s Unpacking libvcflib-tools (1.0.9+dfsg1-3build1) ...
335s Setting up libhtscodecs2:arm64 (1.6.1-1) ...
335s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
335s Setting up libdisorder0:arm64 (0.0.2+git20130809.8062ee1-4build1) ...
335s Setting up libpixman-1-0:arm64 (0.44.0-3) ...
335s Setting up libwfa2-0:arm64 (2.3.3-4) ...
335s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ...
335s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
335s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ...
335s Setting up libdatrie1:arm64 (0.2.13-3build1) ...
335s Setting up libxcb-render0:arm64 (1.17.0-2) ...
335s Setting up unzip (6.0-28ubuntu6) ...
335s Setting up x11-common (1:7.7+23ubuntu3) ...
336s Setting up libsmithwaterman0:arm64 (0.0+git20160702.2610e25-12) ...
336s Setting up libdeflate0:arm64 (1.23-1) ...
336s Setting up libxcb-shm0:arm64 (1.17.0-2) ...
336s Setting up libgomp1:arm64 (14.2.0-17ubuntu1) ...
336s Setting up libfastahack0:arm64 (1.0.0+dfsg-11) ...
336s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ...
336s Setting up zip (3.0-14ubuntu2) ...
336s Setting up libblas3:arm64 (3.12.1-2) ...
336s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
336s Setting up fonts-dejavu-mono (2.37-8) ...
336s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ...
336s Setting up fonts-dejavu-core (2.37-8) ...
336s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ...
336s Setting up libgfortran5:arm64 (14.2.0-17ubuntu1) ...
336s Setting up libwebp7:arm64 (1.5.0-0.1) ...
336s Setting up libhts3t64:arm64 (1.21+ds-1) ...
336s Setting up libharfbuzz0b:arm64 (10.2.0-1) ...
336s Setting up libthai-data (0.1.29-2build1) ...
336s Setting up libxss1:arm64 (1:1.2.3-1build3) ...
336s Setting up libpaper2:arm64 (2.2.5-0.3) ...
336s Setting up xdg-utils (1.2.1-2ubuntu1) ...
336s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
336s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
336s Setting up libice6:arm64 (2:1.1.1-1) ...
336s Setting up liblapack3:arm64 (3.12.1-2) ...
336s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
336s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ...
336s Setting up libpaper-utils (2.2.5-0.3) ...
336s Setting up libthai0:arm64 (0.1.29-2build1) ...
336s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ...
336s Setting up libtabixpp0t64:arm64 (1.1.2-2.1build1) ...
336s Setting up libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ...
336s Setting up libsm6:arm64 (2:1.2.4-1) ...
336s Setting up fontconfig (2.15.0-1.1ubuntu2) ...
338s Regenerating fonts cache... done.
338s Setting up libxft2:arm64 (2.3.6-1build1) ...
338s Setting up libtk8.6:arm64 (8.6.16-1) ...
338s Setting up libpango-1.0-0:arm64 (1.56.1-1) ...
338s Setting up libcairo2:arm64 (1.18.2-2) ...
338s Setting up libvcflib2:arm64 (1.0.9+dfsg1-3build1) ...
338s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ...
338s Setting up libpangoft2-1.0-0:arm64 (1.56.1-1) ...
338s Setting up libpangocairo-1.0-0:arm64 (1.56.1-1) ...
338s Setting up r-base-core (4.4.2-1build1) ...
338s Creating config file /etc/R/Renviron with new version
338s Setting up r-cran-labeling (0.4.3-1) ...
338s Setting up r-cran-lattice (0.22-6-1) ...
338s Setting up r-cran-nlme (3.1.167-1) ...
338s Setting up r-cran-farver (2.1.2-1) ...
338s Setting up r-cran-viridislite (0.4.2-2) ...
338s Setting up r-cran-r6 (2.5.1-1) ...
338s Setting up r-cran-pkgkitten (0.2.4-1) ...
338s Setting up r-cran-magrittr (2.0.3-1) ...
338s Setting up r-cran-littler (0.3.20-2) ...
338s Setting up r-cran-rcpp (1.0.14-1) ...
338s Setting up r-cran-rlang (1.1.5-1) ...
338s Setting up r-cran-gridbase (0.4-7-5build1) ...
338s Setting up littler (0.3.20-2) ...
338s Setting up r-cran-withr (3.0.2+dfsg-1) ...
338s Setting up r-cran-fansi (1.0.5-1) ...
338s Setting up r-cran-mass (7.3-64-1) ...
338s Setting up r-cran-glue (1.8.0-1) ...
338s Setting up r-cran-cli (3.6.3-1) ...
338s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
338s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
338s Setting up r-cran-utf8 (1.2.4-1) ...
338s Setting up r-cran-colorspace (2.1-1+dfsg-1) ...
338s Setting up r-cran-plyr (1.8.9-1) ...
338s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
338s Setting up r-cran-isoband (0.2.7-1) ...
338s Setting up r-cran-gtable (0.3.6+dfsg-1) ...
338s Setting up r-cran-matrix (1.7-2-1) ...
338s Setting up r-cran-mgcv (1.9-1-1) ...
338s Setting up r-cran-vctrs (0.6.5-1) ...
338s Setting up r-cran-pillar (1.10.1+dfsg-1) ...
338s Setting up r-cran-munsell (0.5.1-1) ...
338s Setting up r-cran-tibble (3.2.1+dfsg-3) ...
338s Setting up r-cran-scales (1.3.0-1) ...
338s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ...
338s Setting up libvcflib-tools (1.0.9+dfsg1-3build1) ...
338s Processing triggers for install-info (7.1.1-1) ...
338s Processing triggers for libc-bin (2.41-1ubuntu1) ...
338s Processing triggers for man-db (2.13.0-1) ...
340s autopkgtest [06:12:19]: test command1: vcffilter -f 'AC > 10' samples/1kg-phaseIII-v5a.20130502.genotypes.chr22-16-16.5mb.vcf.gz | wc -l | grep 1471
340s autopkgtest [06:12:19]: test command1: [-----------------------
348s 1471
348s autopkgtest [06:12:27]: test command1: -----------------------]
348s command1             PASS
348s autopkgtest [06:12:27]: test command1:  - - - - - - - - - - results - - - - - - - - - -
349s autopkgtest [06:12:28]: test command2: preparing testbed
349s Reading package lists...
349s Building dependency tree...
349s Reading state information...
350s Starting pkgProblemResolver with broken count: 0
350s Starting 2 pkgProblemResolver with broken count: 0
350s Done
350s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
351s autopkgtest [06:12:30]: test command2: vcffilter -f 'AC > 100' samples/1kg-phaseIII-v5a.20130502.genotypes.chr22-16-16.5mb.vcf.gz | wc -l | grep 748
351s autopkgtest [06:12:30]: test command2: [-----------------------
358s 748
358s autopkgtest [06:12:37]: test command2: -----------------------]
358s command2             PASS
358s autopkgtest [06:12:37]: test command2:  - - - - - - - - - - results - - - - - - - - - -
359s autopkgtest [06:12:38]: @@@@@@@@@@@@@@@@@@@@ summary
359s command1             PASS
359s command2             PASS
656s nova [W] Using flock in prodstack6-arm64
656s Creating nova instance adt-plucky-arm64-libvcflib-20250216-060639-juju-7f2275-prod-proposed-migration-environment-20-7cd3537f-3c9a-4aba-b062-013fc95c0fd0 from image adt/ubuntu-plucky-arm64-server-20250215.img (UUID 8f82fa69-4462-4e93-a46b-73be9ea2c381)...