0s autopkgtest [09:32:40]: starting date and time: 2024-11-13 09:32:40+0000
  0s autopkgtest [09:32:40]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [09:32:40]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.gcbz84ok/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade libslow5lib --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-15.secgroup --name adt-plucky-arm64-libslow5lib-20241113-093240-juju-7f2275-prod-proposed-migration-environment-20-ebac3654-b4bc-458e-9bcc-d45a71d7e116 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
103s autopkgtest [09:34:23]: testbed dpkg architecture: arm64
103s autopkgtest [09:34:23]: testbed apt version: 2.9.8
103s autopkgtest [09:34:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup
104s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
104s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
105s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB]
105s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB]
105s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB]
105s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB]
105s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB]
105s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB]
105s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB]
105s Fetched 1793 kB in 1s (1886 kB/s)
105s Reading package lists...
108s Reading package lists...
108s Building dependency tree...
108s Reading state information...
109s Calculating upgrade...
109s The following NEW packages will be installed:
109s   python3.13-gdbm
109s The following packages will be upgraded:
109s   libpython3-stdlib python3 python3-gdbm python3-minimal
109s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
109s Need to get 101 kB of archives.
109s After this operation, 141 kB of additional disk space will be used.
109s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB]
110s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB]
110s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB]
110s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB]
110s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B]
110s Fetched 101 kB in 0s (284 kB/s)
110s (Reading database ... 
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(Reading database ... 80%
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 79924 files and directories currently installed.)
110s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ...
110s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
110s Setting up python3-minimal (3.12.7-1) ...
111s (Reading database ... 
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(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 79924 files and directories currently installed.)
111s Preparing to unpack .../python3_3.12.7-1_arm64.deb ...
111s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
111s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ...
111s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ...
111s Selecting previously unselected package python3.13-gdbm.
111s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ...
111s Unpacking python3.13-gdbm (3.13.0-2) ...
111s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ...
111s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ...
111s Setting up python3.13-gdbm (3.13.0-2) ...
111s Setting up libpython3-stdlib:arm64 (3.12.7-1) ...
111s Setting up python3 (3.12.7-1) ...
111s Setting up python3-gdbm:arm64 (3.12.7-1) ...
111s Processing triggers for man-db (2.12.1-3) ...
112s Reading package lists...
112s Building dependency tree...
112s Reading state information...
113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
113s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
113s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
114s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
114s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
115s Reading package lists...
115s Reading package lists...
115s Building dependency tree...
115s Reading state information...
116s Calculating upgrade...
116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
116s Reading package lists...
116s Building dependency tree...
116s Reading state information...
117s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
120s autopkgtest [09:34:40]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024
120s autopkgtest [09:34:40]: @@@@@@@@@@@@@@@@@@@@ apt-source libslow5lib
124s Get:1 http://ftpmaster.internal/ubuntu plucky/universe libslow5lib 0.7.0+dfsg-3 (dsc) [2584 B]
124s Get:2 http://ftpmaster.internal/ubuntu plucky/universe libslow5lib 0.7.0+dfsg-3 (tar) [2014 kB]
124s Get:3 http://ftpmaster.internal/ubuntu plucky/universe libslow5lib 0.7.0+dfsg-3 (diff) [8348 B]
124s gpgv: Signature made Wed Jul 24 20:44:11 2024 UTC
124s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
124s gpgv:                issuer "emollier@debian.org"
124s gpgv: Can't check signature: No public key
124s dpkg-source: warning: cannot verify inline signature for ./libslow5lib_0.7.0+dfsg-3.dsc: no acceptable signature found
124s autopkgtest [09:34:44]: testing package libslow5lib version 0.7.0+dfsg-3
125s autopkgtest [09:34:45]: build not needed
126s autopkgtest [09:34:46]: test run-pybinding-test: preparing testbed
134s Reading package lists...
134s Building dependency tree...
134s Reading state information...
134s Starting pkgProblemResolver with broken count: 0
134s Starting 2 pkgProblemResolver with broken count: 0
134s Done
135s The following additional packages will be installed:
135s   libblas3 libgfortran5 liblapack3 libpython3.13-minimal libpython3.13-stdlib
135s   libslow5-0t64 libslow5-dev libstreamvbyte0 python3-all python3-numpy
135s   python3-slow5 python3.13 python3.13-minimal
135s Suggested packages:
135s   gcc gfortran python-numpy-doc python3-dev python3-pytest python3.13-venv
135s   python3.13-doc binfmt-support
135s The following NEW packages will be installed:
135s   autopkgtest-satdep libblas3 libgfortran5 liblapack3 libpython3.13-minimal
135s   libpython3.13-stdlib libslow5-0t64 libslow5-dev libstreamvbyte0 python3-all
135s   python3-numpy python3-slow5 python3.13 python3.13-minimal
135s 0 upgraded, 14 newly installed, 0 to remove and 0 not upgraded.
135s Need to get 12.9 MB/12.9 MB of archives.
135s After this operation, 60.0 MB of additional disk space will be used.
135s Get:1 /tmp/autopkgtest.iNJniW/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [732 B]
135s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB]
136s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.0-2 [2100 kB]
136s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB]
136s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB]
136s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB]
136s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [2073 kB]
136s Get:8 http://ftpmaster.internal/ubuntu plucky/universe arm64 libslow5-0t64 arm64 0.7.0+dfsg-3 [61.9 kB]
136s Get:9 http://ftpmaster.internal/ubuntu plucky/universe arm64 libslow5-dev arm64 0.7.0+dfsg-3 [90.4 kB]
136s Get:10 http://ftpmaster.internal/ubuntu plucky/universe arm64 libstreamvbyte0 arm64 0.4.1-4ubuntu1 [6260 B]
136s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.0-2 [719 kB]
136s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all arm64 3.12.7-1 [890 B]
136s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB]
136s Get:14 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-slow5 arm64 0.7.0+dfsg-3 [452 kB]
137s Fetched 12.9 MB in 1s (12.4 MB/s)
137s Selecting previously unselected package libpython3.13-minimal:arm64.
137s (Reading database ... 
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(Reading database ... 79931 files and directories currently installed.)
137s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_arm64.deb ...
137s Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ...
137s Selecting previously unselected package python3.13-minimal.
137s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_arm64.deb ...
137s Unpacking python3.13-minimal (3.13.0-2) ...
137s Selecting previously unselected package libblas3:arm64.
137s Preparing to unpack .../02-libblas3_3.12.0-3build2_arm64.deb ...
137s Unpacking libblas3:arm64 (3.12.0-3build2) ...
137s Selecting previously unselected package libgfortran5:arm64.
137s Preparing to unpack .../03-libgfortran5_14.2.0-8ubuntu1_arm64.deb ...
137s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ...
137s Selecting previously unselected package liblapack3:arm64.
137s Preparing to unpack .../04-liblapack3_3.12.0-3build2_arm64.deb ...
137s Unpacking liblapack3:arm64 (3.12.0-3build2) ...
137s Selecting previously unselected package libpython3.13-stdlib:arm64.
137s Preparing to unpack .../05-libpython3.13-stdlib_3.13.0-2_arm64.deb ...
137s Unpacking libpython3.13-stdlib:arm64 (3.13.0-2) ...
137s Selecting previously unselected package libslow5-0t64:arm64.
137s Preparing to unpack .../06-libslow5-0t64_0.7.0+dfsg-3_arm64.deb ...
137s Unpacking libslow5-0t64:arm64 (0.7.0+dfsg-3) ...
137s Selecting previously unselected package libslow5-dev:arm64.
137s Preparing to unpack .../07-libslow5-dev_0.7.0+dfsg-3_arm64.deb ...
137s Unpacking libslow5-dev:arm64 (0.7.0+dfsg-3) ...
137s Selecting previously unselected package libstreamvbyte0:arm64.
137s Preparing to unpack .../08-libstreamvbyte0_0.4.1-4ubuntu1_arm64.deb ...
137s Unpacking libstreamvbyte0:arm64 (0.4.1-4ubuntu1) ...
137s Selecting previously unselected package python3.13.
137s Preparing to unpack .../09-python3.13_3.13.0-2_arm64.deb ...
137s Unpacking python3.13 (3.13.0-2) ...
137s Selecting previously unselected package python3-all.
137s Preparing to unpack .../10-python3-all_3.12.7-1_arm64.deb ...
137s Unpacking python3-all (3.12.7-1) ...
137s Selecting previously unselected package python3-numpy.
137s Preparing to unpack .../11-python3-numpy_1%3a1.26.4+ds-11build1_arm64.deb ...
137s Unpacking python3-numpy (1:1.26.4+ds-11build1) ...
137s Selecting previously unselected package python3-slow5.
138s Preparing to unpack .../12-python3-slow5_0.7.0+dfsg-3_arm64.deb ...
138s Unpacking python3-slow5 (0.7.0+dfsg-3) ...
138s Selecting previously unselected package autopkgtest-satdep.
138s Preparing to unpack .../13-1-autopkgtest-satdep.deb ...
138s Unpacking autopkgtest-satdep (0) ...
138s Setting up libstreamvbyte0:arm64 (0.4.1-4ubuntu1) ...
138s Setting up libpython3.13-minimal:arm64 (3.13.0-2) ...
138s Setting up libblas3:arm64 (3.12.0-3build2) ...
138s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
138s Setting up libslow5-0t64:arm64 (0.7.0+dfsg-3) ...
138s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ...
138s Setting up python3.13-minimal (3.13.0-2) ...
139s Setting up libpython3.13-stdlib:arm64 (3.13.0-2) ...
139s Setting up liblapack3:arm64 (3.12.0-3build2) ...
139s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
139s Setting up python3.13 (3.13.0-2) ...
140s Setting up python3-all (3.12.7-1) ...
140s Setting up libslow5-dev:arm64 (0.7.0+dfsg-3) ...
140s Setting up python3-numpy (1:1.26.4+ds-11build1) ...
144s Setting up python3-slow5 (0.7.0+dfsg-3) ...
144s Setting up autopkgtest-satdep (0) ...
144s Processing triggers for systemd (256.5-2ubuntu4) ...
144s Processing triggers for man-db (2.12.1-3) ...
145s Processing triggers for libc-bin (2.40-1ubuntu3) ...
149s (Reading database ... 81602 files and directories currently installed.)
149s Removing autopkgtest-satdep (0) ...
150s autopkgtest [09:35:10]: test run-pybinding-test: [-----------------------
151s Testing with python3.13 in /tmp/autopkgtest.iNJniW/autopkgtest_tmp:
151s Traceback (most recent call last):
151s   File "/tmp/autopkgtest.iNJniW/autopkgtest_tmp/example.py", line 1, in <module>
151s     import pyslow5 as slow5
151s ModuleNotFoundError: No module named 'pyslow5'
151s autopkgtest [09:35:11]: test run-pybinding-test: -----------------------]
152s autopkgtest [09:35:12]: test run-pybinding-test:  - - - - - - - - - - results - - - - - - - - - -
152s run-pybinding-test   FAIL non-zero exit status 1
152s autopkgtest [09:35:12]: test run-pkg-test: preparing testbed
303s autopkgtest [09:37:43]: testbed dpkg architecture: arm64
303s autopkgtest [09:37:43]: testbed apt version: 2.9.8
303s autopkgtest [09:37:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup
304s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
304s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB]
305s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB]
305s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB]
305s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
305s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB]
305s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB]
305s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB]
305s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB]
305s Fetched 1793 kB in 1s (2016 kB/s)
305s Reading package lists...
308s Reading package lists...
308s Building dependency tree...
308s Reading state information...
309s Calculating upgrade...
310s The following NEW packages will be installed:
310s   python3.13-gdbm
310s The following packages will be upgraded:
310s   libpython3-stdlib python3 python3-gdbm python3-minimal
310s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
310s Need to get 101 kB of archives.
310s After this operation, 141 kB of additional disk space will be used.
310s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB]
310s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB]
310s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB]
310s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB]
310s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B]
310s Fetched 101 kB in 0s (263 kB/s)
311s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 79924 files and directories currently installed.)
311s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ...
311s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
311s Setting up python3-minimal (3.12.7-1) ...
311s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 79924 files and directories currently installed.)
311s Preparing to unpack .../python3_3.12.7-1_arm64.deb ...
311s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
311s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ...
311s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ...
311s Selecting previously unselected package python3.13-gdbm.
311s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ...
311s Unpacking python3.13-gdbm (3.13.0-2) ...
311s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ...
311s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ...
311s Setting up python3.13-gdbm (3.13.0-2) ...
311s Setting up libpython3-stdlib:arm64 (3.12.7-1) ...
311s Setting up python3 (3.12.7-1) ...
312s Setting up python3-gdbm:arm64 (3.12.7-1) ...
312s Processing triggers for man-db (2.12.1-3) ...
313s Reading package lists...
313s Building dependency tree...
313s Reading state information...
314s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
314s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
314s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
314s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
314s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
315s Reading package lists...
315s Reading package lists...
316s Building dependency tree...
316s Reading state information...
316s Calculating upgrade...
317s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
317s Reading package lists...
317s Building dependency tree...
317s Reading state information...
318s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
328s Reading package lists...
328s Building dependency tree...
328s Reading state information...
328s Starting pkgProblemResolver with broken count: 0
329s Starting 2 pkgProblemResolver with broken count: 0
329s Done
329s The following additional packages will be installed:
329s   build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu
329s   g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
329s   gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu libasan8 libblas3 libcc1-0
329s   libgcc-14-dev libgfortran5 libgomp1 libhwasan0 libisl23 libitm1 liblapack3
329s   liblsan0 libmpc3 libslow5-0t64 libslow5-dev libstdc++-14-dev
329s   libstreamvbyte-dev libstreamvbyte0 libtsan2 libubsan1 python3-numpy
329s   python3-slow5 zlib1g-dev
329s Suggested packages:
329s   cpp-doc gcc-14-locales cpp-14-doc gcc-14-doc gcc-multilib manpages-dev
329s   autoconf automake libtool flex bison gdb gcc-doc gdb-aarch64-linux-gnu
329s   libstdc++-14-doc gfortran python-numpy-doc python3-dev python3-pytest
329s The following NEW packages will be installed:
329s   autopkgtest-satdep build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu
329s   cpp-aarch64-linux-gnu g++ g++-14 g++-14-aarch64-linux-gnu
329s   g++-aarch64-linux-gnu gcc gcc-14 gcc-14-aarch64-linux-gnu
329s   gcc-aarch64-linux-gnu libasan8 libblas3 libcc1-0 libgcc-14-dev libgfortran5
329s   libgomp1 libhwasan0 libisl23 libitm1 liblapack3 liblsan0 libmpc3
329s   libslow5-0t64 libslow5-dev libstdc++-14-dev libstreamvbyte-dev
329s   libstreamvbyte0 libtsan2 libubsan1 python3-numpy python3-slow5 zlib1g-dev
329s 0 upgraded, 36 newly installed, 0 to remove and 0 not upgraded.
329s Need to get 67.9 MB/67.9 MB of archives.
329s After this operation, 243 MB of additional disk space will be used.
329s Get:1 /tmp/autopkgtest.iNJniW/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [756 B]
330s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB]
330s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB]
330s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [10.6 MB]
331s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-8ubuntu1 [1028 B]
331s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [5452 B]
331s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.1.0-2ubuntu1 [22.5 kB]
331s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 14.2.0-8ubuntu1 [49.7 kB]
331s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB]
331s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 14.2.0-8ubuntu1 [27.8 kB]
331s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 14.2.0-8ubuntu1 [2893 kB]
331s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 14.2.0-8ubuntu1 [1283 kB]
331s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 14.2.0-8ubuntu1 [2686 kB]
331s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 14.2.0-8ubuntu1 [1151 kB]
331s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 14.2.0-8ubuntu1 [1598 kB]
331s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-8ubuntu1 [2594 kB]
331s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [20.9 MB]
332s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-8ubuntu1 [518 kB]
332s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1200 B]
332s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.1.0-2ubuntu1 [4994 B]
332s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-8ubuntu1 [2476 kB]
332s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [12.1 MB]
333s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-8ubuntu1 [19.9 kB]
333s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [958 B]
333s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.1.0-2ubuntu1 [1080 B]
333s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
333s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB]
333s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB]
333s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB]
333s Get:30 http://ftpmaster.internal/ubuntu plucky/universe arm64 libslow5-0t64 arm64 0.7.0+dfsg-3 [61.9 kB]
333s Get:31 http://ftpmaster.internal/ubuntu plucky/universe arm64 libslow5-dev arm64 0.7.0+dfsg-3 [90.4 kB]
333s Get:32 http://ftpmaster.internal/ubuntu plucky/universe arm64 libstreamvbyte0 arm64 0.4.1-4ubuntu1 [6260 B]
333s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 libstreamvbyte-dev arm64 0.4.1-4ubuntu1 [6620 B]
333s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB]
333s Get:35 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-slow5 arm64 0.7.0+dfsg-3 [452 kB]
333s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB]
334s Fetched 67.9 MB in 4s (17.8 MB/s)
334s Selecting previously unselected package libisl23:arm64.
334s (Reading database ... 
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(Reading database ... 79931 files and directories currently installed.)
334s Preparing to unpack .../00-libisl23_0.27-1_arm64.deb ...
334s Unpacking libisl23:arm64 (0.27-1) ...
334s Selecting previously unselected package libmpc3:arm64.
334s Preparing to unpack .../01-libmpc3_1.3.1-1build2_arm64.deb ...
334s Unpacking libmpc3:arm64 (1.3.1-1build2) ...
334s Selecting previously unselected package cpp-14-aarch64-linux-gnu.
334s Preparing to unpack .../02-cpp-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ...
334s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ...
334s Selecting previously unselected package cpp-14.
334s Preparing to unpack .../03-cpp-14_14.2.0-8ubuntu1_arm64.deb ...
334s Unpacking cpp-14 (14.2.0-8ubuntu1) ...
334s Selecting previously unselected package cpp-aarch64-linux-gnu.
334s Preparing to unpack .../04-cpp-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ...
334s Unpacking cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
334s Selecting previously unselected package cpp.
334s Preparing to unpack .../05-cpp_4%3a14.1.0-2ubuntu1_arm64.deb ...
334s Unpacking cpp (4:14.1.0-2ubuntu1) ...
334s Selecting previously unselected package libcc1-0:arm64.
334s Preparing to unpack .../06-libcc1-0_14.2.0-8ubuntu1_arm64.deb ...
334s Unpacking libcc1-0:arm64 (14.2.0-8ubuntu1) ...
334s Selecting previously unselected package libgomp1:arm64.
334s Preparing to unpack .../07-libgomp1_14.2.0-8ubuntu1_arm64.deb ...
334s Unpacking libgomp1:arm64 (14.2.0-8ubuntu1) ...
334s Selecting previously unselected package libitm1:arm64.
334s Preparing to unpack .../08-libitm1_14.2.0-8ubuntu1_arm64.deb ...
334s Unpacking libitm1:arm64 (14.2.0-8ubuntu1) ...
334s Selecting previously unselected package libasan8:arm64.
334s Preparing to unpack .../09-libasan8_14.2.0-8ubuntu1_arm64.deb ...
334s Unpacking libasan8:arm64 (14.2.0-8ubuntu1) ...
334s Selecting previously unselected package liblsan0:arm64.
334s Preparing to unpack .../10-liblsan0_14.2.0-8ubuntu1_arm64.deb ...
334s Unpacking liblsan0:arm64 (14.2.0-8ubuntu1) ...
334s Selecting previously unselected package libtsan2:arm64.
334s Preparing to unpack .../11-libtsan2_14.2.0-8ubuntu1_arm64.deb ...
334s Unpacking libtsan2:arm64 (14.2.0-8ubuntu1) ...
334s Selecting previously unselected package libubsan1:arm64.
334s Preparing to unpack .../12-libubsan1_14.2.0-8ubuntu1_arm64.deb ...
334s Unpacking libubsan1:arm64 (14.2.0-8ubuntu1) ...
335s Selecting previously unselected package libhwasan0:arm64.
335s Preparing to unpack .../13-libhwasan0_14.2.0-8ubuntu1_arm64.deb ...
335s Unpacking libhwasan0:arm64 (14.2.0-8ubuntu1) ...
335s Selecting previously unselected package libgcc-14-dev:arm64.
335s Preparing to unpack .../14-libgcc-14-dev_14.2.0-8ubuntu1_arm64.deb ...
335s Unpacking libgcc-14-dev:arm64 (14.2.0-8ubuntu1) ...
335s Selecting previously unselected package gcc-14-aarch64-linux-gnu.
335s Preparing to unpack .../15-gcc-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ...
335s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ...
335s Selecting previously unselected package gcc-14.
335s Preparing to unpack .../16-gcc-14_14.2.0-8ubuntu1_arm64.deb ...
335s Unpacking gcc-14 (14.2.0-8ubuntu1) ...
335s Selecting previously unselected package gcc-aarch64-linux-gnu.
335s Preparing to unpack .../17-gcc-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ...
335s Unpacking gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
335s Selecting previously unselected package gcc.
335s Preparing to unpack .../18-gcc_4%3a14.1.0-2ubuntu1_arm64.deb ...
335s Unpacking gcc (4:14.1.0-2ubuntu1) ...
335s Selecting previously unselected package libstdc++-14-dev:arm64.
335s Preparing to unpack .../19-libstdc++-14-dev_14.2.0-8ubuntu1_arm64.deb ...
335s Unpacking libstdc++-14-dev:arm64 (14.2.0-8ubuntu1) ...
335s Selecting previously unselected package g++-14-aarch64-linux-gnu.
336s Preparing to unpack .../20-g++-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ...
336s Unpacking g++-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ...
336s Selecting previously unselected package g++-14.
336s Preparing to unpack .../21-g++-14_14.2.0-8ubuntu1_arm64.deb ...
336s Unpacking g++-14 (14.2.0-8ubuntu1) ...
336s Selecting previously unselected package g++-aarch64-linux-gnu.
336s Preparing to unpack .../22-g++-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ...
336s Unpacking g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
336s Selecting previously unselected package g++.
336s Preparing to unpack .../23-g++_4%3a14.1.0-2ubuntu1_arm64.deb ...
336s Unpacking g++ (4:14.1.0-2ubuntu1) ...
336s Selecting previously unselected package build-essential.
336s Preparing to unpack .../24-build-essential_12.10ubuntu1_arm64.deb ...
336s Unpacking build-essential (12.10ubuntu1) ...
336s Selecting previously unselected package libblas3:arm64.
336s Preparing to unpack .../25-libblas3_3.12.0-3build2_arm64.deb ...
336s Unpacking libblas3:arm64 (3.12.0-3build2) ...
336s Selecting previously unselected package libgfortran5:arm64.
336s Preparing to unpack .../26-libgfortran5_14.2.0-8ubuntu1_arm64.deb ...
336s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ...
336s Selecting previously unselected package liblapack3:arm64.
336s Preparing to unpack .../27-liblapack3_3.12.0-3build2_arm64.deb ...
336s Unpacking liblapack3:arm64 (3.12.0-3build2) ...
336s Selecting previously unselected package libslow5-0t64:arm64.
336s Preparing to unpack .../28-libslow5-0t64_0.7.0+dfsg-3_arm64.deb ...
336s Unpacking libslow5-0t64:arm64 (0.7.0+dfsg-3) ...
336s Selecting previously unselected package libslow5-dev:arm64.
336s Preparing to unpack .../29-libslow5-dev_0.7.0+dfsg-3_arm64.deb ...
336s Unpacking libslow5-dev:arm64 (0.7.0+dfsg-3) ...
336s Selecting previously unselected package libstreamvbyte0:arm64.
336s Preparing to unpack .../30-libstreamvbyte0_0.4.1-4ubuntu1_arm64.deb ...
336s Unpacking libstreamvbyte0:arm64 (0.4.1-4ubuntu1) ...
336s Selecting previously unselected package libstreamvbyte-dev:arm64.
336s Preparing to unpack .../31-libstreamvbyte-dev_0.4.1-4ubuntu1_arm64.deb ...
336s Unpacking libstreamvbyte-dev:arm64 (0.4.1-4ubuntu1) ...
336s Selecting previously unselected package python3-numpy.
336s Preparing to unpack .../32-python3-numpy_1%3a1.26.4+ds-11build1_arm64.deb ...
336s Unpacking python3-numpy (1:1.26.4+ds-11build1) ...
337s Selecting previously unselected package python3-slow5.
337s Preparing to unpack .../33-python3-slow5_0.7.0+dfsg-3_arm64.deb ...
337s Unpacking python3-slow5 (0.7.0+dfsg-3) ...
337s Selecting previously unselected package zlib1g-dev:arm64.
337s Preparing to unpack .../34-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ...
337s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
337s Selecting previously unselected package autopkgtest-satdep.
337s Preparing to unpack .../35-2-autopkgtest-satdep.deb ...
337s Unpacking autopkgtest-satdep (0) ...
337s Setting up libstreamvbyte0:arm64 (0.4.1-4ubuntu1) ...
337s Setting up libgomp1:arm64 (14.2.0-8ubuntu1) ...
337s Setting up libblas3:arm64 (3.12.0-3build2) ...
337s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
337s Setting up libstreamvbyte-dev:arm64 (0.4.1-4ubuntu1) ...
337s Setting up libmpc3:arm64 (1.3.1-1build2) ...
337s Setting up libslow5-0t64:arm64 (0.7.0+dfsg-3) ...
337s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ...
337s Setting up libubsan1:arm64 (14.2.0-8ubuntu1) ...
337s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
337s Setting up libhwasan0:arm64 (14.2.0-8ubuntu1) ...
337s Setting up libasan8:arm64 (14.2.0-8ubuntu1) ...
337s Setting up libtsan2:arm64 (14.2.0-8ubuntu1) ...
337s Setting up libisl23:arm64 (0.27-1) ...
337s Setting up libcc1-0:arm64 (14.2.0-8ubuntu1) ...
337s Setting up liblsan0:arm64 (14.2.0-8ubuntu1) ...
337s Setting up libitm1:arm64 (14.2.0-8ubuntu1) ...
337s Setting up liblapack3:arm64 (3.12.0-3build2) ...
337s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
337s Setting up libslow5-dev:arm64 (0.7.0+dfsg-3) ...
337s Setting up python3-numpy (1:1.26.4+ds-11build1) ...
339s Setting up cpp-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ...
339s Setting up libgcc-14-dev:arm64 (14.2.0-8ubuntu1) ...
339s Setting up libstdc++-14-dev:arm64 (14.2.0-8ubuntu1) ...
339s Setting up cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
339s Setting up python3-slow5 (0.7.0+dfsg-3) ...
339s Setting up cpp-14 (14.2.0-8ubuntu1) ...
339s Setting up cpp (4:14.1.0-2ubuntu1) ...
339s Setting up gcc-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ...
339s Setting up gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
339s Setting up g++-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ...
339s Setting up gcc-14 (14.2.0-8ubuntu1) ...
339s Setting up g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
339s Setting up g++-14 (14.2.0-8ubuntu1) ...
339s Setting up gcc (4:14.1.0-2ubuntu1) ...
339s Setting up g++ (4:14.1.0-2ubuntu1) ...
339s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
339s Setting up build-essential (12.10ubuntu1) ...
339s Setting up autopkgtest-satdep (0) ...
339s Processing triggers for man-db (2.12.1-3) ...
340s Processing triggers for libc-bin (2.40-1ubuntu3) ...
344s (Reading database ... 82050 files and directories currently installed.)
344s Removing autopkgtest-satdep (0) ...
348s autopkgtest [09:38:28]: test run-pkg-test: [-----------------------
348s Checking unit_test_ascii.c
349s Done!
349s Checking unit_test_binary.c
349s Done!
349s Checking unit_test_empty.c
349s Done!
349s Checking unit_test_enum.c
349s Done!
349s Checking unit_test_helpers.c
349s Done!
349s Checking unit_test_lossless.c
349s Done!
349s Checking unit_test_press.c
349s Done!
349s Checking unit_test_two_rg.c
350s Done!
350s autopkgtest [09:38:30]: test run-pkg-test: -----------------------]
351s autopkgtest [09:38:31]: test run-pkg-test:  - - - - - - - - - - results - - - - - - - - - -
351s run-pkg-test         PASS
351s autopkgtest [09:38:31]: @@@@@@@@@@@@@@@@@@@@ summary
351s run-pybinding-test   FAIL non-zero exit status 1
351s run-pkg-test         PASS
374s nova [W] Skipping flock in bos03-arm64
374s Creating nova instance adt-plucky-arm64-libslow5lib-20241113-093240-juju-7f2275-prod-proposed-migration-environment-20-ebac3654-b4bc-458e-9bcc-d45a71d7e116 from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)...
374s nova [W] Skipping flock in bos03-arm64
374s Creating nova instance adt-plucky-arm64-libslow5lib-20241113-093240-juju-7f2275-prod-proposed-migration-environment-20-ebac3654-b4bc-458e-9bcc-d45a71d7e116 from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)...