0s autopkgtest [01:17:31]: starting date and time: 2025-03-16 01:17:31+0000 0s autopkgtest [01:17:31]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [01:17:31]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.xwqoklhi/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:libpng1.6 --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=libpng1.6/1.6.47-1.1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-28.secgroup --name adt-plucky-arm64-lammps-20250316-011731-juju-7f2275-prod-proposed-migration-environment-20-03b76f86-06de-447c-b479-4bac9ab4e665 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 237s autopkgtest [01:21:28]: testbed dpkg architecture: arm64 237s autopkgtest [01:21:28]: testbed apt version: 2.9.33 237s autopkgtest [01:21:28]: @@@@@@@@@@@@@@@@@@@@ test bed setup 238s autopkgtest [01:21:29]: testbed release detected to be: None 238s autopkgtest [01:21:29]: updating testbed package index (apt update) 239s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 239s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 239s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 239s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 239s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [365 kB] 239s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.7 kB] 239s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [41.4 kB] 239s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [72.2 kB] 239s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1816 B] 239s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 239s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [316 kB] 239s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [13.9 kB] 239s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [16.8 kB] 239s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B] 240s Fetched 972 kB in 1s (936 kB/s) 241s Reading package lists... 241s Reading package lists... 242s Building dependency tree... 242s Reading state information... 242s Calculating upgrade... 242s Calculating upgrade... 243s The following packages will be upgraded: 243s pinentry-curses python3-jinja2 strace 243s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 243s Need to get 647 kB of archives. 243s After this operation, 11.3 kB of additional disk space will be used. 243s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 243s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB] 243s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 244s Fetched 647 kB in 1s (971 kB/s) 244s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 244s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 244s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 244s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ... 244s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 244s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 244s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 244s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 245s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 245s Setting up strace (6.13+ds-1ubuntu1) ... 245s Processing triggers for man-db (2.13.0-1) ... 245s Reading package lists... 246s Building dependency tree... 246s Reading state information... 246s Solving dependencies... 247s The following packages will be REMOVED: 247s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 247s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 247s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 247s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 247s 0 upgraded, 0 newly installed, 11 to remove and 1 not upgraded. 247s After this operation, 267 MB disk space will be freed. 247s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 247s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 247s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 247s Removing libpython3.12t64:arm64 (3.12.9-1) ... 247s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 247s Removing libnsl2:arm64 (1.3.0-3build3) ... 247s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 247s Removing libunwind8:arm64 (1.6.2-3.1) ... 247s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 248s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 249s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 249s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 249s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 249s /etc/kernel/postrm.d/initramfs-tools: 249s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 249s /etc/kernel/postrm.d/zz-flash-kernel: 249s flash-kernel: Kernel 6.11.0-8-generic has been removed. 250s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 250s /etc/kernel/postrm.d/zz-update-grub: 250s Sourcing file `/etc/default/grub' 250s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 250s Generating grub configuration file ... 250s Found linux image: /boot/vmlinuz-6.14.0-10-generic 250s Found initrd image: /boot/initrd.img-6.14.0-10-generic 250s Warning: os-prober will not be executed to detect other bootable partitions. 250s Systems on them will not be added to the GRUB boot configuration. 250s Check GRUB_DISABLE_OS_PROBER documentation entry. 250s Adding boot menu entry for UEFI Firmware Settings ... 250s done 251s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 251s Processing triggers for libc-bin (2.41-1ubuntu1) ... 251s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 251s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 251s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 251s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 251s autopkgtest [01:21:42]: upgrading testbed (apt dist-upgrade and autopurge) 251s Reading package lists... 252s Building dependency tree... 252s Reading state information... 252s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 252s Starting 2 pkgProblemResolver with broken count: 0 252s Done 253s Entering ResolveByKeep 253s 254s Calculating upgrade... 254s The following packages will be upgraded: 254s libpng16-16t64 254s 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 254s Need to get 186 kB of archives. 254s After this operation, 0 B of additional disk space will be used. 254s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpng16-16t64 arm64 1.6.47-1.1 [186 kB] 255s Fetched 186 kB in 0s (413 kB/s) 255s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 255s Preparing to unpack .../libpng16-16t64_1.6.47-1.1_arm64.deb ... 255s Unpacking libpng16-16t64:arm64 (1.6.47-1.1) over (1.6.47-1) ... 255s Setting up libpng16-16t64:arm64 (1.6.47-1.1) ... 255s Processing triggers for libc-bin (2.41-1ubuntu1) ... 255s Reading package lists... 256s Building dependency tree... 256s Reading state information... 256s Starting pkgProblemResolver with broken count: 0 256s Starting 2 pkgProblemResolver with broken count: 0 256s Done 257s Solving dependencies... 257s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 257s autopkgtest [01:21:48]: rebooting testbed after setup commands that affected boot 280s autopkgtest [01:22:11]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 283s autopkgtest [01:22:14]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps 296s Get:1 http://ftpmaster.internal/ubuntu plucky/universe lammps 20240207+dfsg-3build3 (dsc) [3182 B] 296s Get:2 http://ftpmaster.internal/ubuntu plucky/universe lammps 20240207+dfsg-3build3 (tar) [153 MB] 296s Get:3 http://ftpmaster.internal/ubuntu plucky/universe lammps 20240207+dfsg-3build3 (diff) [17.4 kB] 296s gpgv: Signature made Tue Feb 25 20:55:58 2025 UTC 296s gpgv: using RSA key B8340990283D8D9BC1949AC74799A35146D12B35 296s gpgv: Can't check signature: No public key 296s dpkg-source: warning: cannot verify inline signature for ./lammps_20240207+dfsg-3build3.dsc: no acceptable signature found 303s autopkgtest [01:22:34]: testing package lammps version 20240207+dfsg-3build3 306s autopkgtest [01:22:37]: build not needed 332s autopkgtest [01:23:03]: test crack: preparing testbed 332s Reading package lists... 332s Building dependency tree... 332s Reading state information... 332s Starting pkgProblemResolver with broken count: 0 333s Starting 2 pkgProblemResolver with broken count: 0 333s Done 333s The following NEW packages will be installed: 333s fontconfig-config fonts-dejavu-core fonts-dejavu-mono lammps lammps-data 333s libaec0 libamd-comgr2 libamdhip64-5 libblas3 libcairo2 libdeflate0 333s libdouble-conversion3 libevent-pthreads-2.1-7t64 libfabric1 libfftw3-double3 333s libfontconfig1 libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 333s libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 libhdf5-310 333s libhdf5-hl-310 libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 333s libibmad5 libibumad3 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp26 333s libkim-api2 liblammps0t64 liblapack3 liblerc4 libllvm17t64 libmunge2 333s libnetcdf22 libogg0 libopengl0 libopenmpi40 libpciaccess0 libpixman-1-0 333s libpmix2t64 libpnetcdf6 libproj25 librdmacm1t64 libsharpyuv0 libsz2 libtbb12 333s libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheoradec1 libtheoraenc1 libtiff6 333s libtk8.6 libucx0 libvoro++1 libvtk9.3 libvulkan1 libwayland-server0 libwebp7 333s libx11-xcb1 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 333s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxft2 libxnvctrl0 333s libxrender1 libxshmfence1 libxss1 libxxf86vm1 mesa-libgallium 333s mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data 333s x11-common 334s 0 upgraded, 92 newly installed, 0 to remove and 0 not upgraded. 334s Need to get 127 MB of archives. 334s After this operation, 575 MB of additional disk space will be used. 334s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 334s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 334s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 334s Get:4 http://ftpmaster.internal/ubuntu plucky/universe arm64 lammps-data all 20240207+dfsg-3build3 [9732 kB] 335s Get:5 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 335s Get:6 http://ftpmaster.internal/ubuntu plucky/universe arm64 libllvm17t64 arm64 1:17.0.6-21 [24.9 MB] 337s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3build2 [14.1 MB] 338s Get:8 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhsakmt1 arm64 5.7.0-1build1 [63.6 kB] 338s Get:9 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhsa-runtime64-1 arm64 5.7.1-2build1 [286 kB] 338s Get:10 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamdhip64-5 arm64 5.7.1-5 [9704 kB] 338s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 338s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 338s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 338s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 338s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 338s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 338s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 338s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 338s Get:19 http://ftpmaster.internal/ubuntu plucky/universe arm64 libdouble-conversion3 arm64 3.3.1-1 [38.8 kB] 338s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10 [7922 B] 338s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 librdmacm1t64 arm64 55.0-1ubuntu1 [71.5 kB] 338s Get:22 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfabric1 arm64 1.17.0-3.1 [542 kB] 338s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 338s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libfftw3-double3 arm64 3.3.10-2fakesync1build1 [392 kB] 338s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libwayland-server0 arm64 1.23.1-3 [36.1 kB] 338s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libx11-xcb1 arm64 2:1.8.10-2 [8020 B] 338s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-dri3-0 arm64 1.17.0-2 [7606 B] 338s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-present0 arm64 1.17.0-2 [6224 B] 338s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-randr0 arm64 1.17.0-2 [18.5 kB] 338s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-sync1 arm64 1.17.0-2 [9688 B] 338s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xfixes0 arm64 1.17.0-2 [10.6 kB] 338s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libxshmfence1 arm64 1.3-1build5 [4938 B] 339s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 mesa-libgallium arm64 25.0.1-2ubuntu1 [9450 kB] 339s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libgbm1 arm64 25.0.1-2ubuntu1 [33.7 kB] 339s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 339s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libvulkan1 arm64 1.4.304.0-1 [158 kB] 339s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libgl1-mesa-dri arm64 25.0.1-2ubuntu1 [34.5 kB] 339s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libglvnd0 arm64 1.7.0-1build1 [60.6 kB] 339s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-glx0 arm64 1.17.0-2 [25.5 kB] 339s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libxxf86vm1 arm64 1:1.1.4-1build4 [9130 B] 339s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libglx-mesa0 arm64 25.0.1-2ubuntu1 [151 kB] 339s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libglx0 arm64 1.7.0-1build1 [33.2 kB] 339s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libgl1 arm64 1.7.0-1build1 [106 kB] 339s Get:44 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgl2ps1.4 arm64 1.4.2+dfsg1-2build1 [40.6 kB] 339s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 libglew2.2 arm64 2.2.0-4build1 [191 kB] 339s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 339s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-310 arm64 1.14.5+repack-3 [1331 kB] 339s Get:48 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [59.8 kB] 339s Get:49 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhwloc15 arm64 2.12.0-1 [162 kB] 339s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 339s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 339s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libjsoncpp26 arm64 1.9.6-3 [78.7 kB] 339s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 libkim-api2 arm64 2.3.0-1ubuntu1 [565 kB] 339s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 340s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 libnetcdf22 arm64 1:4.9.3-1 [504 kB] 340s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmunge2 arm64 0.5.16-1 [15.2 kB] 340s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libpciaccess0 arm64 0.17-3build1 [18.9 kB] 340s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu4 [12.4 kB] 340s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1build1 [37.6 kB] 340s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhwloc-plugins arm64 2.12.0-1 [15.9 kB] 340s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpmix2t64 arm64 5.0.6-5 [666 kB] 340s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 libibumad3 arm64 55.0-1ubuntu1 [29.8 kB] 340s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libibmad5 arm64 55.0-1ubuntu1 [43.3 kB] 340s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 libucx0 arm64 1.18.1+ds-2 [1161 kB] 340s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 libopenmpi40 arm64 5.0.7-1 [2419 kB] 340s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpnetcdf6 arm64 1.14.0-2 [971 kB] 340s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 libvoro++1 arm64 0.5+revert-to-0.4.6+dfsg1-1 [101 kB] 340s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libogg0 arm64 1.3.5-3build1 [22.6 kB] 340s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libopengl0 arm64 1.7.0-1build1 [35.1 kB] 340s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 proj-data all 9.5.1-1 [7924 kB] 340s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 340s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 340s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 340s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 341s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 341s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 libproj25 arm64 9.5.1-1 [1342 kB] 341s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtbbbind-2-5 arm64 2022.0.0-2 [15.1 kB] 341s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtbbmalloc2 arm64 2022.0.0-2 [38.9 kB] 341s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtbb12 arm64 2022.0.0-2 [71.3 kB] 341s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 341s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 libtheoradec1 arm64 1.2.0~alpha1+dfsg-5 [57.0 kB] 341s Get:82 http://ftpmaster.internal/ubuntu plucky/main arm64 libtheoraenc1 arm64 1.2.0~alpha1+dfsg-5 [107 kB] 341s Get:83 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 341s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 341s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 341s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 341s Get:87 http://ftpmaster.internal/ubuntu plucky/universe arm64 libvtk9.3 arm64 9.3.0+dfsg1-4ubuntu1 [24.0 MB] 343s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblammps0t64 arm64 20240207+dfsg-3build3 [6834 kB] 343s Get:89 http://ftpmaster.internal/ubuntu plucky/universe arm64 openmpi-common all 5.0.7-1 [97.9 kB] 343s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 openmpi-bin arm64 5.0.7-1 [195 kB] 343s Get:91 http://ftpmaster.internal/ubuntu plucky/universe arm64 mpi-default-bin arm64 1.18 [2510 B] 343s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 lammps arm64 20240207+dfsg-3build3 [15.1 kB] 344s Fetched 127 MB in 10s (12.7 MB/s) 344s Selecting previously unselected package fonts-dejavu-mono. 344s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 345s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 345s Unpacking fonts-dejavu-mono (2.37-8) ... 345s Selecting previously unselected package fonts-dejavu-core. 345s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 345s Unpacking fonts-dejavu-core (2.37-8) ... 345s Selecting previously unselected package fontconfig-config. 345s Preparing to unpack .../02-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 345s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 345s Selecting previously unselected package lammps-data. 345s Preparing to unpack .../03-lammps-data_20240207+dfsg-3build3_all.deb ... 345s Unpacking lammps-data (20240207+dfsg-3build3) ... 345s Selecting previously unselected package libaec0:arm64. 345s Preparing to unpack .../04-libaec0_1.1.3-1_arm64.deb ... 345s Unpacking libaec0:arm64 (1.1.3-1) ... 345s Selecting previously unselected package libllvm17t64:arm64. 345s Preparing to unpack .../05-libllvm17t64_1%3a17.0.6-21_arm64.deb ... 345s Unpacking libllvm17t64:arm64 (1:17.0.6-21) ... 346s Selecting previously unselected package libamd-comgr2:arm64. 346s Preparing to unpack .../06-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_arm64.deb ... 346s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 346s Selecting previously unselected package libhsakmt1:arm64. 346s Preparing to unpack .../07-libhsakmt1_5.7.0-1build1_arm64.deb ... 346s Unpacking libhsakmt1:arm64 (5.7.0-1build1) ... 346s Selecting previously unselected package libhsa-runtime64-1. 346s Preparing to unpack .../08-libhsa-runtime64-1_5.7.1-2build1_arm64.deb ... 346s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 346s Selecting previously unselected package libamdhip64-5. 346s Preparing to unpack .../09-libamdhip64-5_5.7.1-5_arm64.deb ... 346s Unpacking libamdhip64-5 (5.7.1-5) ... 346s Selecting previously unselected package libblas3:arm64. 346s Preparing to unpack .../10-libblas3_3.12.1-2_arm64.deb ... 346s Unpacking libblas3:arm64 (3.12.1-2) ... 346s Selecting previously unselected package libfontconfig1:arm64. 346s Preparing to unpack .../11-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 346s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 346s Selecting previously unselected package libpixman-1-0:arm64. 346s Preparing to unpack .../12-libpixman-1-0_0.44.0-3_arm64.deb ... 346s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 346s Selecting previously unselected package libxcb-render0:arm64. 346s Preparing to unpack .../13-libxcb-render0_1.17.0-2_arm64.deb ... 346s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 346s Selecting previously unselected package libxcb-shm0:arm64. 346s Preparing to unpack .../14-libxcb-shm0_1.17.0-2_arm64.deb ... 346s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 346s Selecting previously unselected package libxrender1:arm64. 346s Preparing to unpack .../15-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 346s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 346s Selecting previously unselected package libcairo2:arm64. 347s Preparing to unpack .../16-libcairo2_1.18.2-2_arm64.deb ... 347s Unpacking libcairo2:arm64 (1.18.2-2) ... 347s Selecting previously unselected package libdeflate0:arm64. 347s Preparing to unpack .../17-libdeflate0_1.23-1_arm64.deb ... 347s Unpacking libdeflate0:arm64 (1.23-1) ... 347s Selecting previously unselected package libdouble-conversion3:arm64. 347s Preparing to unpack .../18-libdouble-conversion3_3.3.1-1_arm64.deb ... 347s Unpacking libdouble-conversion3:arm64 (3.3.1-1) ... 347s Selecting previously unselected package libevent-pthreads-2.1-7t64:arm64. 347s Preparing to unpack .../19-libevent-pthreads-2.1-7t64_2.1.12-stable-10_arm64.deb ... 347s Unpacking libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 347s Selecting previously unselected package librdmacm1t64:arm64. 347s Preparing to unpack .../20-librdmacm1t64_55.0-1ubuntu1_arm64.deb ... 347s Unpacking librdmacm1t64:arm64 (55.0-1ubuntu1) ... 347s Selecting previously unselected package libfabric1:arm64. 347s Preparing to unpack .../21-libfabric1_1.17.0-3.1_arm64.deb ... 347s Unpacking libfabric1:arm64 (1.17.0-3.1) ... 347s Selecting previously unselected package libgomp1:arm64. 347s Preparing to unpack .../22-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 347s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 347s Selecting previously unselected package libfftw3-double3:arm64. 347s Preparing to unpack .../23-libfftw3-double3_3.3.10-2fakesync1build1_arm64.deb ... 347s Unpacking libfftw3-double3:arm64 (3.3.10-2fakesync1build1) ... 347s Selecting previously unselected package libwayland-server0:arm64. 347s Preparing to unpack .../24-libwayland-server0_1.23.1-3_arm64.deb ... 347s Unpacking libwayland-server0:arm64 (1.23.1-3) ... 347s Selecting previously unselected package libx11-xcb1:arm64. 347s Preparing to unpack .../25-libx11-xcb1_2%3a1.8.10-2_arm64.deb ... 347s Unpacking libx11-xcb1:arm64 (2:1.8.10-2) ... 347s Selecting previously unselected package libxcb-dri3-0:arm64. 347s Preparing to unpack .../26-libxcb-dri3-0_1.17.0-2_arm64.deb ... 347s Unpacking libxcb-dri3-0:arm64 (1.17.0-2) ... 347s Selecting previously unselected package libxcb-present0:arm64. 347s Preparing to unpack .../27-libxcb-present0_1.17.0-2_arm64.deb ... 347s Unpacking libxcb-present0:arm64 (1.17.0-2) ... 347s Selecting previously unselected package libxcb-randr0:arm64. 347s Preparing to unpack .../28-libxcb-randr0_1.17.0-2_arm64.deb ... 347s Unpacking libxcb-randr0:arm64 (1.17.0-2) ... 347s Selecting previously unselected package libxcb-sync1:arm64. 347s Preparing to unpack .../29-libxcb-sync1_1.17.0-2_arm64.deb ... 347s Unpacking libxcb-sync1:arm64 (1.17.0-2) ... 347s Selecting previously unselected package libxcb-xfixes0:arm64. 347s Preparing to unpack .../30-libxcb-xfixes0_1.17.0-2_arm64.deb ... 347s Unpacking libxcb-xfixes0:arm64 (1.17.0-2) ... 347s Selecting previously unselected package libxshmfence1:arm64. 347s Preparing to unpack .../31-libxshmfence1_1.3-1build5_arm64.deb ... 347s Unpacking libxshmfence1:arm64 (1.3-1build5) ... 347s Selecting previously unselected package mesa-libgallium:arm64. 347s Preparing to unpack .../32-mesa-libgallium_25.0.1-2ubuntu1_arm64.deb ... 347s Unpacking mesa-libgallium:arm64 (25.0.1-2ubuntu1) ... 348s Selecting previously unselected package libgbm1:arm64. 348s Preparing to unpack .../33-libgbm1_25.0.1-2ubuntu1_arm64.deb ... 348s Unpacking libgbm1:arm64 (25.0.1-2ubuntu1) ... 348s Selecting previously unselected package libgfortran5:arm64. 348s Preparing to unpack .../34-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 348s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 348s Selecting previously unselected package libvulkan1:arm64. 348s Preparing to unpack .../35-libvulkan1_1.4.304.0-1_arm64.deb ... 348s Unpacking libvulkan1:arm64 (1.4.304.0-1) ... 348s Selecting previously unselected package libgl1-mesa-dri:arm64. 348s Preparing to unpack .../36-libgl1-mesa-dri_25.0.1-2ubuntu1_arm64.deb ... 348s Unpacking libgl1-mesa-dri:arm64 (25.0.1-2ubuntu1) ... 348s Selecting previously unselected package libglvnd0:arm64. 348s Preparing to unpack .../37-libglvnd0_1.7.0-1build1_arm64.deb ... 348s Unpacking libglvnd0:arm64 (1.7.0-1build1) ... 348s Selecting previously unselected package libxcb-glx0:arm64. 348s Preparing to unpack .../38-libxcb-glx0_1.17.0-2_arm64.deb ... 348s Unpacking libxcb-glx0:arm64 (1.17.0-2) ... 348s Selecting previously unselected package libxxf86vm1:arm64. 348s Preparing to unpack .../39-libxxf86vm1_1%3a1.1.4-1build4_arm64.deb ... 348s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build4) ... 348s Selecting previously unselected package libglx-mesa0:arm64. 348s Preparing to unpack .../40-libglx-mesa0_25.0.1-2ubuntu1_arm64.deb ... 348s Unpacking libglx-mesa0:arm64 (25.0.1-2ubuntu1) ... 348s Selecting previously unselected package libglx0:arm64. 348s Preparing to unpack .../41-libglx0_1.7.0-1build1_arm64.deb ... 348s Unpacking libglx0:arm64 (1.7.0-1build1) ... 348s Selecting previously unselected package libgl1:arm64. 348s Preparing to unpack .../42-libgl1_1.7.0-1build1_arm64.deb ... 348s Unpacking libgl1:arm64 (1.7.0-1build1) ... 348s Selecting previously unselected package libgl2ps1.4. 348s Preparing to unpack .../43-libgl2ps1.4_1.4.2+dfsg1-2build1_arm64.deb ... 348s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 348s Selecting previously unselected package libglew2.2:arm64. 348s Preparing to unpack .../44-libglew2.2_2.2.0-4build1_arm64.deb ... 348s Unpacking libglew2.2:arm64 (2.2.0-4build1) ... 348s Selecting previously unselected package libsz2:arm64. 348s Preparing to unpack .../45-libsz2_1.1.3-1_arm64.deb ... 348s Unpacking libsz2:arm64 (1.1.3-1) ... 348s Selecting previously unselected package libhdf5-310:arm64. 348s Preparing to unpack .../46-libhdf5-310_1.14.5+repack-3_arm64.deb ... 348s Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ... 348s Selecting previously unselected package libhdf5-hl-310:arm64. 348s Preparing to unpack .../47-libhdf5-hl-310_1.14.5+repack-3_arm64.deb ... 348s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 348s Selecting previously unselected package libhwloc15:arm64. 348s Preparing to unpack .../48-libhwloc15_2.12.0-1_arm64.deb ... 348s Unpacking libhwloc15:arm64 (2.12.0-1) ... 348s Selecting previously unselected package libjpeg-turbo8:arm64. 348s Preparing to unpack .../49-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 348s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 348s Selecting previously unselected package libjpeg8:arm64. 348s Preparing to unpack .../50-libjpeg8_8c-2ubuntu11_arm64.deb ... 348s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 348s Selecting previously unselected package libjsoncpp26:arm64. 348s Preparing to unpack .../51-libjsoncpp26_1.9.6-3_arm64.deb ... 348s Unpacking libjsoncpp26:arm64 (1.9.6-3) ... 348s Selecting previously unselected package libkim-api2:arm64. 348s Preparing to unpack .../52-libkim-api2_2.3.0-1ubuntu1_arm64.deb ... 349s Unpacking libkim-api2:arm64 (2.3.0-1ubuntu1) ... 349s Selecting previously unselected package liblapack3:arm64. 349s Preparing to unpack .../53-liblapack3_3.12.1-2_arm64.deb ... 349s Unpacking liblapack3:arm64 (3.12.1-2) ... 349s Selecting previously unselected package libnetcdf22:arm64. 349s Preparing to unpack .../54-libnetcdf22_1%3a4.9.3-1_arm64.deb ... 349s Unpacking libnetcdf22:arm64 (1:4.9.3-1) ... 349s Selecting previously unselected package libmunge2:arm64. 349s Preparing to unpack .../55-libmunge2_0.5.16-1_arm64.deb ... 349s Unpacking libmunge2:arm64 (0.5.16-1) ... 349s Selecting previously unselected package libpciaccess0:arm64. 349s Preparing to unpack .../56-libpciaccess0_0.17-3build1_arm64.deb ... 349s Unpacking libpciaccess0:arm64 (0.17-3build1) ... 349s Selecting previously unselected package libxnvctrl0:arm64. 349s Preparing to unpack .../57-libxnvctrl0_510.47.03-0ubuntu4_arm64.deb ... 349s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 349s Selecting previously unselected package ocl-icd-libopencl1:arm64. 349s Preparing to unpack .../58-ocl-icd-libopencl1_2.3.2-1build1_arm64.deb ... 349s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 349s Selecting previously unselected package libhwloc-plugins:arm64. 349s Preparing to unpack .../59-libhwloc-plugins_2.12.0-1_arm64.deb ... 349s Unpacking libhwloc-plugins:arm64 (2.12.0-1) ... 349s Selecting previously unselected package libpmix2t64:arm64. 349s Preparing to unpack .../60-libpmix2t64_5.0.6-5_arm64.deb ... 349s Unpacking libpmix2t64:arm64 (5.0.6-5) ... 349s Selecting previously unselected package libibumad3:arm64. 349s Preparing to unpack .../61-libibumad3_55.0-1ubuntu1_arm64.deb ... 349s Unpacking libibumad3:arm64 (55.0-1ubuntu1) ... 349s Selecting previously unselected package libibmad5:arm64. 349s Preparing to unpack .../62-libibmad5_55.0-1ubuntu1_arm64.deb ... 349s Unpacking libibmad5:arm64 (55.0-1ubuntu1) ... 349s Selecting previously unselected package libucx0:arm64. 349s Preparing to unpack .../63-libucx0_1.18.1+ds-2_arm64.deb ... 349s Unpacking libucx0:arm64 (1.18.1+ds-2) ... 349s Selecting previously unselected package libopenmpi40:arm64. 349s Preparing to unpack .../64-libopenmpi40_5.0.7-1_arm64.deb ... 349s Unpacking libopenmpi40:arm64 (5.0.7-1) ... 349s Selecting previously unselected package libpnetcdf6:arm64. 349s Preparing to unpack .../65-libpnetcdf6_1.14.0-2_arm64.deb ... 349s Unpacking libpnetcdf6:arm64 (1.14.0-2) ... 349s Selecting previously unselected package libvoro++1. 349s Preparing to unpack .../66-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_arm64.deb ... 349s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 349s Selecting previously unselected package libogg0:arm64. 349s Preparing to unpack .../67-libogg0_1.3.5-3build1_arm64.deb ... 349s Unpacking libogg0:arm64 (1.3.5-3build1) ... 349s Selecting previously unselected package libopengl0:arm64. 349s Preparing to unpack .../68-libopengl0_1.7.0-1build1_arm64.deb ... 349s Unpacking libopengl0:arm64 (1.7.0-1build1) ... 349s Selecting previously unselected package proj-data. 350s Preparing to unpack .../69-proj-data_9.5.1-1_all.deb ... 350s Unpacking proj-data (9.5.1-1) ... 350s Selecting previously unselected package libjbig0:arm64. 350s Preparing to unpack .../70-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 350s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 350s Selecting previously unselected package liblerc4:arm64. 350s Preparing to unpack .../71-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 350s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 350s Selecting previously unselected package libsharpyuv0:arm64. 350s Preparing to unpack .../72-libsharpyuv0_1.5.0-0.1_arm64.deb ... 350s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 350s Selecting previously unselected package libwebp7:arm64. 350s Preparing to unpack .../73-libwebp7_1.5.0-0.1_arm64.deb ... 350s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 350s Selecting previously unselected package libtiff6:arm64. 350s Preparing to unpack .../74-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 350s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 350s Selecting previously unselected package libproj25:arm64. 350s Preparing to unpack .../75-libproj25_9.5.1-1_arm64.deb ... 350s Unpacking libproj25:arm64 (9.5.1-1) ... 350s Selecting previously unselected package libtbbbind-2-5:arm64. 350s Preparing to unpack .../76-libtbbbind-2-5_2022.0.0-2_arm64.deb ... 350s Unpacking libtbbbind-2-5:arm64 (2022.0.0-2) ... 350s Selecting previously unselected package libtbbmalloc2:arm64. 350s Preparing to unpack .../77-libtbbmalloc2_2022.0.0-2_arm64.deb ... 350s Unpacking libtbbmalloc2:arm64 (2022.0.0-2) ... 350s Selecting previously unselected package libtbb12:arm64. 350s Preparing to unpack .../78-libtbb12_2022.0.0-2_arm64.deb ... 350s Unpacking libtbb12:arm64 (2022.0.0-2) ... 350s Selecting previously unselected package libtcl8.6:arm64. 350s Preparing to unpack .../79-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 350s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 350s Selecting previously unselected package libtheoradec1:arm64. 350s Preparing to unpack .../80-libtheoradec1_1.2.0~alpha1+dfsg-5_arm64.deb ... 350s Unpacking libtheoradec1:arm64 (1.2.0~alpha1+dfsg-5) ... 350s Selecting previously unselected package libtheoraenc1:arm64. 350s Preparing to unpack .../81-libtheoraenc1_1.2.0~alpha1+dfsg-5_arm64.deb ... 350s Unpacking libtheoraenc1:arm64 (1.2.0~alpha1+dfsg-5) ... 350s Selecting previously unselected package libxft2:arm64. 350s Preparing to unpack .../82-libxft2_2.3.6-1build1_arm64.deb ... 350s Unpacking libxft2:arm64 (2.3.6-1build1) ... 350s Selecting previously unselected package x11-common. 350s Preparing to unpack .../83-x11-common_1%3a7.7+23ubuntu3_all.deb ... 350s Unpacking x11-common (1:7.7+23ubuntu3) ... 350s Selecting previously unselected package libxss1:arm64. 350s Preparing to unpack .../84-libxss1_1%3a1.2.3-1build3_arm64.deb ... 350s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 350s Selecting previously unselected package libtk8.6:arm64. 350s Preparing to unpack .../85-libtk8.6_8.6.16-1_arm64.deb ... 350s Unpacking libtk8.6:arm64 (8.6.16-1) ... 350s Selecting previously unselected package libvtk9.3:arm64. 350s Preparing to unpack .../86-libvtk9.3_9.3.0+dfsg1-4ubuntu1_arm64.deb ... 350s Unpacking libvtk9.3:arm64 (9.3.0+dfsg1-4ubuntu1) ... 351s Selecting previously unselected package liblammps0t64:arm64. 351s Preparing to unpack .../87-liblammps0t64_20240207+dfsg-3build3_arm64.deb ... 351s Unpacking liblammps0t64:arm64 (20240207+dfsg-3build3) ... 351s Selecting previously unselected package openmpi-common. 351s Preparing to unpack .../88-openmpi-common_5.0.7-1_all.deb ... 351s Unpacking openmpi-common (5.0.7-1) ... 351s Selecting previously unselected package openmpi-bin. 352s Preparing to unpack .../89-openmpi-bin_5.0.7-1_arm64.deb ... 352s Unpacking openmpi-bin (5.0.7-1) ... 352s Selecting previously unselected package mpi-default-bin. 352s Preparing to unpack .../90-mpi-default-bin_1.18_arm64.deb ... 352s Unpacking mpi-default-bin (1.18) ... 352s Selecting previously unselected package lammps. 352s Preparing to unpack .../91-lammps_20240207+dfsg-3build3_arm64.deb ... 352s Unpacking lammps (20240207+dfsg-3build3) ... 352s Setting up libxcb-dri3-0:arm64 (1.17.0-2) ... 352s Setting up libtbbmalloc2:arm64 (2022.0.0-2) ... 352s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 352s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 352s Setting up libwayland-server0:arm64 (1.23.1-3) ... 352s Setting up libx11-xcb1:arm64 (2:1.8.10-2) ... 352s Setting up libpciaccess0:arm64 (0.17-3build1) ... 352s Setting up libdouble-conversion3:arm64 (3.3.1-1) ... 352s Setting up libxcb-xfixes0:arm64 (1.17.0-2) ... 352s Setting up libogg0:arm64 (1.3.5-3build1) ... 352s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 352s Setting up proj-data (9.5.1-1) ... 352s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 352s Setting up lammps-data (20240207+dfsg-3build3) ... 352s Setting up libxcb-render0:arm64 (1.17.0-2) ... 352s Setting up libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 352s Setting up libglvnd0:arm64 (1.7.0-1build1) ... 352s Setting up libxcb-glx0:arm64 (1.17.0-2) ... 352s Setting up x11-common (1:7.7+23ubuntu3) ... 352s Setting up libibumad3:arm64 (55.0-1ubuntu1) ... 352s Setting up libdeflate0:arm64 (1.23-1) ... 352s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 352s Setting up libibmad5:arm64 (55.0-1ubuntu1) ... 352s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 352s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 352s Setting up libaec0:arm64 (1.1.3-1) ... 352s Setting up libopengl0:arm64 (1.7.0-1build1) ... 352s Setting up libxxf86vm1:arm64 (1:1.1.4-1build4) ... 352s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 352s Setting up libxcb-present0:arm64 (1.17.0-2) ... 352s Setting up libtheoraenc1:arm64 (1.2.0~alpha1+dfsg-5) ... 352s Setting up libblas3:arm64 (3.12.1-2) ... 352s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 352s Setting up libmunge2:arm64 (0.5.16-1) ... 352s Setting up libllvm17t64:arm64 (1:17.0.6-21) ... 352s Setting up libxcb-sync1:arm64 (1.17.0-2) ... 352s Setting up libjsoncpp26:arm64 (1.9.6-3) ... 352s Setting up fonts-dejavu-mono (2.37-8) ... 352s Setting up libhwloc15:arm64 (2.12.0-1) ... 352s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... 352s Setting up fonts-dejavu-core (2.37-8) ... 352s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 352s Setting up libfftw3-double3:arm64 (3.3.10-2fakesync1build1) ... 352s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ... 352s Setting up libvulkan1:arm64 (1.4.304.0-1) ... 352s Setting up libwebp7:arm64 (1.5.0-0.1) ... 352s Setting up ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 352s Setting up libxshmfence1:arm64 (1.3-1build5) ... 352s Setting up libxcb-randr0:arm64 (1.17.0-2) ... 352s Setting up openmpi-common (5.0.7-1) ... 352s Setting up librdmacm1t64:arm64 (55.0-1ubuntu1) ... 352s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 352s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 352s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 352s Setting up libhsakmt1:arm64 (5.7.0-1build1) ... 352s Setting up libsz2:arm64 (1.1.3-1) ... 352s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 352s Setting up libfabric1:arm64 (1.17.0-3.1) ... 352s Setting up mesa-libgallium:arm64 (25.0.1-2ubuntu1) ... 352s Setting up liblapack3:arm64 (3.12.1-2) ... 352s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 352s Setting up libgbm1:arm64 (25.0.1-2ubuntu1) ... 352s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 352s Setting up libgl1-mesa-dri:arm64 (25.0.1-2ubuntu1) ... 352s Setting up libkim-api2:arm64 (2.3.0-1ubuntu1) ... 352s Setting up libhwloc-plugins:arm64 (2.12.0-1) ... 352s Setting up libtbbbind-2-5:arm64 (2022.0.0-2) ... 352s Setting up libpmix2t64:arm64 (5.0.6-5) ... 352s Setting up libhdf5-310:arm64 (1.14.5+repack-3) ... 352s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 352s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 352s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 352s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 352s Setting up libxft2:arm64 (2.3.6-1build1) ... 352s Setting up libglx-mesa0:arm64 (25.0.1-2ubuntu1) ... 352s Setting up libglx0:arm64 (1.7.0-1build1) ... 352s Setting up libproj25:arm64 (9.5.1-1) ... 352s Setting up libtk8.6:arm64 (8.6.16-1) ... 352s Setting up libnetcdf22:arm64 (1:4.9.3-1) ... 352s Setting up libtbb12:arm64 (2022.0.0-2) ... 352s Setting up libcairo2:arm64 (1.18.2-2) ... 352s Setting up libgl1:arm64 (1.7.0-1build1) ... 352s Setting up libamdhip64-5 (5.7.1-5) ... 352s Setting up libtheoradec1:arm64 (1.2.0~alpha1+dfsg-5) ... 352s Setting up libglew2.2:arm64 (2.2.0-4build1) ... 352s Setting up libucx0:arm64 (1.18.1+ds-2) ... 352s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 352s Setting up libopenmpi40:arm64 (5.0.7-1) ... 352s Setting up libpnetcdf6:arm64 (1.14.0-2) ... 352s Setting up libvtk9.3:arm64 (9.3.0+dfsg1-4ubuntu1) ... 352s Setting up openmpi-bin (5.0.7-1) ... 352s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 352s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 352s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 352s Setting up mpi-default-bin (1.18) ... 352s Setting up liblammps0t64:arm64 (20240207+dfsg-3build3) ... 352s Setting up lammps (20240207+dfsg-3build3) ... 352s Processing triggers for man-db (2.13.0-1) ... 353s Processing triggers for libc-bin (2.41-1ubuntu1) ... 355s autopkgtest [01:23:26]: test crack: [----------------------- 355s LAMMPS (7 Feb 2024 - Update 1) 355s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 355s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 355s using 1 OpenMP thread(s) per MPI task 355s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 355s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 355s 2 by 1 by 1 MPI processor grid 355s Created 8141 atoms 355s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 355s create_atoms CPU = 0.001 seconds 355s 302 atoms in group lower 355s 302 atoms in group upper 355s 604 atoms in group boundary 355s 7537 atoms in group mobile 355s 841 atoms in group leftupper 355s 841 atoms in group leftlower 355s Setting atom values ... 355s 841 settings made for type 355s Setting atom values ... 355s 841 settings made for type 355s Setting atom values ... 355s 302 settings made for type 355s Setting atom values ... 355s 302 settings made for type 355s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 355s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 355s Neighbor list info ... 355s update: every = 1 steps, delay = 5 steps, check = yes 355s max neighbors/atom: 2000, page size: 100000 355s master list distance cutoff = 2.8 355s ghost atom cutoff = 2.8 355s binsize = 1.4, bins = 80 56 1 355s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 355s (1) pair lj/cut, perpetual 355s attributes: half, newton on 355s pair build: half/bin/atomonly/newton 355s stencil: half/bin/2d 355s bin: standard 355s Setting up Verlet run ... 355s Unit style : lj 355s Current step : 0 355s Time step : 0.003 355s Per MPI rank memory allocation (min/avg/max) = 3.097 | 3.097 | 3.097 Mbytes 355s Step Temp E_pair E_mol TotEng Press Volume 355s 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 355s 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 355s 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 355s 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 356s 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 356s 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 356s 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 356s 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 356s 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 356s 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 356s 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 356s 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 356s 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 357s 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 357s 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 357s 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 357s 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 357s 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 357s 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 357s 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 357s 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 357s 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 358s 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 358s 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 358s 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 358s 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 358s Loop time of 2.90504 on 2 procs for 5000 steps with 8141 atoms 358s 358s Performance: 446121.614 tau/day, 1721.148 timesteps/s, 14.012 Matom-step/s 358s 97.3% CPU use with 2 MPI tasks x 1 OpenMP threads 358s 358s MPI task timing breakdown: 358s Section | min time | avg time | max time |%varavg| %total 358s --------------------------------------------------------------- 358s Pair | 2.2047 | 2.2206 | 2.2365 | 1.1 | 76.44 358s Neigh | 0.10741 | 0.11192 | 0.11642 | 1.3 | 3.85 358s Comm | 0.22624 | 0.2487 | 0.27116 | 4.5 | 8.56 358s Output | 0.0009214 | 0.0030524 | 0.0051835 | 3.9 | 0.11 358s Modify | 0.22018 | 0.22506 | 0.22994 | 1.0 | 7.75 358s Other | | 0.09568 | | | 3.29 358s 358s Nlocal: 4070.5 ave 4085 max 4056 min 358s Histogram: 1 0 0 0 0 0 0 0 0 1 358s Nghost: 207 ave 208 max 206 min 358s Histogram: 1 0 0 0 0 0 0 0 0 1 358s Neighs: 35700 ave 35927 max 35473 min 358s Histogram: 1 0 0 0 0 0 0 0 0 1 358s 358s Total # of neighbors = 71400 358s Ave neighs/atom = 8.7704213 358s Neighbor list builds = 106 358s Dangerous builds = 0 358s Total wall time: 0:00:02 358s LAMMPS (7 Feb 2024 - Update 1) 363s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 363s using 1 OpenMP thread(s) per MPI task 363s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 363s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 363s 1 by 1 by 1 MPI processor grid 363s Created 8141 atoms 363s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 363s create_atoms CPU = 0.002 seconds 363s 302 atoms in group lower 363s 302 atoms in group upper 363s 604 atoms in group boundary 363s 7537 atoms in group mobile 363s 841 atoms in group leftupper 363s 841 atoms in group leftlower 363s Setting atom values ... 363s 841 settings made for type 363s Setting atom values ... 363s 841 settings made for type 363s Setting atom values ... 363s 302 settings made for type 363s Setting atom values ... 363s 302 settings made for type 363s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 363s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 363s Neighbor list info ... 363s update: every = 1 steps, delay = 5 steps, check = yes 363s max neighbors/atom: 2000, page size: 100000 363s master list distance cutoff = 2.8 363s ghost atom cutoff = 2.8 363s binsize = 1.4, bins = 80 56 1 363s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 363s (1) pair lj/cut, perpetual 363s attributes: half, newton on 363s pair build: half/bin/atomonly/newton 363s stencil: half/bin/2d 363s bin: standard 363s Setting up Verlet run ... 363s Unit style : lj 363s Current step : 0 363s Time step : 0.003 363s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 363s Step Temp E_pair E_mol TotEng Press Volume 363s 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 363s 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 363s 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 363s 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 363s 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 363s 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 363s 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 363s 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 363s 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 363s 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 363s 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 363s 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 363s 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 363s 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 363s 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 363s 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 363s 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 363s 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 363s 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 363s 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 363s 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 363s 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 363s 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 363s 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 363s 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 363s 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 363s Loop time of 5.27248 on 1 procs for 5000 steps with 8141 atoms 363s 363s Performance: 245804.613 tau/day, 948.320 timesteps/s, 7.720 Matom-step/s 363s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 363s 363s MPI task timing breakdown: 363s Section | min time | avg time | max time |%varavg| %total 363s --------------------------------------------------------------- 363s Pair | 4.4528 | 4.4528 | 4.4528 | 0.0 | 84.45 363s Neigh | 0.21445 | 0.21445 | 0.21445 | 0.0 | 4.07 363s Comm | 0.0046425 | 0.0046425 | 0.0046425 | 0.0 | 0.09 363s Output | 0.0017584 | 0.0017584 | 0.0017584 | 0.0 | 0.03 363s Modify | 0.46045 | 0.46045 | 0.46045 | 0.0 | 8.73 363s Other | | 0.1384 | | | 2.62 363s 363s Nlocal: 8141 ave 8141 max 8141 min 363s Histogram: 1 0 0 0 0 0 0 0 0 0 363s Nghost: 0 ave 0 max 0 min 363s Histogram: 1 0 0 0 0 0 0 0 0 0 363s Neighs: 71389 ave 71389 max 71389 min 363s Histogram: 1 0 0 0 0 0 0 0 0 0 363s 363s Total # of neighbors = 71389 363s Ave neighs/atom = 8.7690701 363s Neighbor list builds = 100 363s Dangerous builds = 0 363s Total wall time: 0:00:05 363s run: OK 364s autopkgtest [01:23:35]: test crack: -----------------------] 364s crack PASS 364s autopkgtest [01:23:35]: test crack: - - - - - - - - - - results - - - - - - - - - - 365s autopkgtest [01:23:36]: test dipole: preparing testbed 365s Reading package lists... 365s Building dependency tree... 365s Reading state information... 365s Starting pkgProblemResolver with broken count: 0 366s Starting 2 pkgProblemResolver with broken count: 0 366s Done 366s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 367s autopkgtest [01:23:38]: test dipole: [----------------------- 367s LAMMPS (7 Feb 2024 - Update 1) 367s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 367s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 367s using 1 OpenMP thread(s) per MPI task 367s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 367s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 367s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 367s 2 by 1 by 1 MPI processor grid 367s Created 200 atoms 367s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 367s create_atoms CPU = 0.001 seconds 367s Setting atom values ... 367s 200 settings made for mass 367s Setting atom values ... 367s 200 settings made for dipole/random 367s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 367s Neighbor list info ... 367s update: every = 1 steps, delay = 0 steps, check = yes 367s max neighbors/atom: 2000, page size: 100000 367s master list distance cutoff = 2.8 367s ghost atom cutoff = 2.8 367s binsize = 1.4, bins = 13 13 2 367s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 367s (1) pair lj/cut/dipole/cut, perpetual 367s attributes: half, newton on 367s pair build: half/bin/atomonly/newton 367s stencil: half/bin/2d 367s bin: standard 367s Setting up Verlet run ... 367s Unit style : lj 367s Current step : 0 367s Time step : 0.005 367s Per MPI rank memory allocation (min/avg/max) = 5.049 | 5.049 | 5.049 Mbytes 367s Step Temp E_pair c_erot TotEng Press 367s 0 0 -2.0965715 0 -2.0965715 -2.4759659 367s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 367s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 367s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856086 368s 2000 0.44906518 -2.8037483 0.24422519 -2.3569284 0.15010152 368s 2500 0.46056435 -2.8144144 0.25015831 -2.3561529 -0.38358808 368s 3000 0.4348415 -2.7856362 0.24988108 -2.3529689 0.086257242 368s 3500 0.41528069 -2.7415634 0.22418981 -2.3283591 0.13066802 368s 4000 0.40006774 -2.7153553 0.22170678 -2.3172879 -0.17425321 368s 4500 0.45764976 -2.7751555 0.2288386 -2.319794 -0.22228559 368s 5000 0.45119236 -2.7437941 0.21642728 -2.2948577 0.086840364 368s 5500 0.41805158 -2.7191643 0.2405108 -2.303203 -0.20373032 368s 6000 0.41353959 -2.73374 0.26555768 -2.3222681 0.013197521 368s 6500 0.46952638 -2.7206692 0.19356607 -2.2534905 -0.32099423 368s 7000 0.4308564 -2.6963241 0.21298331 -2.2676219 0.11638995 368s 7500 0.44328381 -2.767933 0.28845767 -2.3268656 -0.055714929 368s 8000 0.48149201 -2.7648936 0.25607634 -2.2858091 -0.24833472 368s 8500 0.44641155 -2.735761 0.26866772 -2.2915815 -0.11006786 368s 9000 0.45443104 -2.70388 0.2307522 -2.2517211 -0.077100374 368s 9500 0.42544663 -2.6959692 0.25023057 -2.2726498 -0.04183171 368s 10000 0.42622279 -2.6434464 0.2125908 -2.2193547 0.052056849 368s Loop time of 0.482887 on 2 procs for 10000 steps with 200 atoms 368s 368s Performance: 8946199.439 tau/day, 20708.795 timesteps/s, 4.142 Matom-step/s 368s 99.0% CPU use with 2 MPI tasks x 1 OpenMP threads 368s 368s MPI task timing breakdown: 368s Section | min time | avg time | max time |%varavg| %total 368s --------------------------------------------------------------- 368s Pair | 0.25717 | 0.29009 | 0.32301 | 6.1 | 60.07 368s Neigh | 0.014671 | 0.015686 | 0.0167 | 0.8 | 3.25 368s Comm | 0.099253 | 0.13232 | 0.16539 | 9.1 | 27.40 368s Output | 0.00034136 | 0.00080747 | 0.0012736 | 0.0 | 0.17 368s Modify | 0.024478 | 0.02595 | 0.027423 | 0.9 | 5.37 368s Other | | 0.01803 | | | 3.73 368s 368s Nlocal: 100 ave 104 max 96 min 368s Histogram: 1 0 0 0 0 0 0 0 0 1 368s Nghost: 123.5 ave 124 max 123 min 368s Histogram: 1 0 0 0 0 0 0 0 0 1 368s Neighs: 820 ave 885 max 755 min 368s Histogram: 1 0 0 0 0 0 0 0 0 1 368s 368s Total # of neighbors = 1640 368s Ave neighs/atom = 8.2 368s Neighbor list builds = 697 368s Dangerous builds = 0 368s Total wall time: 0:00:00 368s LAMMPS (7 Feb 2024 - Update 1) 369s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 369s using 1 OpenMP thread(s) per MPI task 369s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 369s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 369s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 369s 1 by 1 by 1 MPI processor grid 369s Created 200 atoms 369s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 369s create_atoms CPU = 0.001 seconds 369s Setting atom values ... 369s 200 settings made for mass 369s Setting atom values ... 369s 200 settings made for dipole/random 369s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 369s Neighbor list info ... 369s update: every = 1 steps, delay = 0 steps, check = yes 369s max neighbors/atom: 2000, page size: 100000 369s master list distance cutoff = 2.8 369s ghost atom cutoff = 2.8 369s binsize = 1.4, bins = 13 13 2 369s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 369s (1) pair lj/cut/dipole/cut, perpetual 369s attributes: half, newton on 369s pair build: half/bin/atomonly/newton 369s stencil: half/bin/2d 369s bin: standard 369s Setting up Verlet run ... 369s Unit style : lj 369s Current step : 0 369s Time step : 0.005 369s Per MPI rank memory allocation (min/avg/max) = 5.05 | 5.05 | 5.05 Mbytes 369s Step Temp E_pair c_erot TotEng Press 369s 0 0 -2.0965715 0 -2.0965715 -2.4759659 369s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 369s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 369s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856087 369s 2000 0.44906137 -2.8037446 0.24422529 -2.3569285 0.15012276 369s 2500 0.46036094 -2.8144628 0.25011505 -2.3564037 -0.37955581 369s 3000 0.44916796 -2.7986738 0.24197589 -2.3517517 -0.23759595 369s 3500 0.43708892 -2.7404913 0.20046667 -2.3055878 -0.068108938 369s 4000 0.4277424 -2.7516171 0.22285533 -2.3260134 -0.38856067 369s 4500 0.41051154 -2.7253155 0.22244047 -2.3168566 -0.56435269 369s 5000 0.3930005 -2.7393881 0.26645487 -2.3483526 -0.14501759 369s 5500 0.48374634 -2.7361451 0.17785357 -2.2548175 -0.23588662 369s 6000 0.44341889 -2.7200909 0.2049925 -2.2788891 0.30169398 369s 6500 0.45604374 -2.7449044 0.23816385 -2.2911408 -0.02615159 369s 7000 0.41178901 -2.7023053 0.24691126 -2.2925752 -0.089298567 369s 7500 0.49214202 -2.7631906 0.22991178 -2.2735093 -0.21670068 369s 8000 0.51272822 -2.7861027 0.23867667 -2.2759381 -0.054576195 369s 8500 0.3942697 -2.6555823 0.23621182 -2.263284 -0.15323416 369s 9000 0.44393797 -2.7051517 0.23305036 -2.2634334 -0.32144821 369s 9500 0.49155958 -2.757627 0.23397146 -2.2685252 0.083278026 369s 10000 0.49343489 -2.7193593 0.19771681 -2.2283916 -0.10873755 369s Loop time of 0.696414 on 1 procs for 10000 steps with 200 atoms 369s 369s Performance: 6203204.344 tau/day, 14359.269 timesteps/s, 2.872 Matom-step/s 369s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads 369s 369s MPI task timing breakdown: 369s Section | min time | avg time | max time |%varavg| %total 369s --------------------------------------------------------------- 369s Pair | 0.57026 | 0.57026 | 0.57026 | 0.0 | 81.89 369s Neigh | 0.030405 | 0.030405 | 0.030405 | 0.0 | 4.37 369s Comm | 0.034305 | 0.034305 | 0.034305 | 0.0 | 4.93 369s Output | 0.00032108 | 0.00032108 | 0.00032108 | 0.0 | 0.05 369s Modify | 0.048704 | 0.048704 | 0.048704 | 0.0 | 6.99 369s Other | | 0.01242 | | | 1.78 369s 369s Nlocal: 200 ave 200 max 200 min 369s Histogram: 1 0 0 0 0 0 0 0 0 0 369s Nghost: 155 ave 155 max 155 min 369s Histogram: 1 0 0 0 0 0 0 0 0 0 369s Neighs: 1664 ave 1664 max 1664 min 369s Histogram: 1 0 0 0 0 0 0 0 0 0 369s 369s Total # of neighbors = 1664 369s Ave neighs/atom = 8.32 369s Neighbor list builds = 697 369s Dangerous builds = 0 369s Total wall time: 0:00:00 369s run: OK 369s autopkgtest [01:23:40]: test dipole: -----------------------] 370s autopkgtest [01:23:41]: test dipole: - - - - - - - - - - results - - - - - - - - - - 370s dipole PASS 370s autopkgtest [01:23:41]: test ellipse: preparing testbed 370s Reading package lists... 370s Building dependency tree... 370s Reading state information... 371s Starting pkgProblemResolver with broken count: 0 371s Starting 2 pkgProblemResolver with broken count: 0 371s Done 372s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 372s autopkgtest [01:23:43]: test ellipse: [----------------------- 373s LAMMPS (7 Feb 2024 - Update 1) 373s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 373s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 373s using 1 OpenMP thread(s) per MPI task 373s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 373s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 373s 2 by 1 by 1 MPI processor grid 373s Created 400 atoms 373s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 373s create_atoms CPU = 0.001 seconds 373s Setting atom values ... 373s 29 settings made for type/fraction 373s Setting atom values ... 373s 371 settings made for mass 373s Setting atom values ... 373s 29 settings made for mass 373s Setting atom values ... 373s 371 settings made for shape 373s Setting atom values ... 373s 29 settings made for shape 373s Setting atom values ... 373s 400 settings made for quat/random 373s 371 atoms in group spheroid 373s 373s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 373s 373s Your simulation uses code contributions which should be cited: 373s - pair gayberne command: doi:10.1063/1.3058435 373s The log file lists these citations in BibTeX format. 373s 373s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 373s 373s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 373s Neighbor list info ... 373s update: every = 1 steps, delay = 0 steps, check = yes 373s max neighbors/atom: 2000, page size: 100000 373s master list distance cutoff = 4.8 373s ghost atom cutoff = 4.8 373s binsize = 2.4, bins = 59 59 3 373s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 373s (1) pair gayberne, perpetual 373s attributes: half, newton on 373s pair build: half/bin/atomonly/newton 373s stencil: half/bin/2d 373s bin: standard 373s Setting up Verlet run ... 373s Unit style : lj 373s Current step : 0 373s Time step : 0.002 373s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 373s Step c_rot E_pair TotEng Press Volume 373s 0 2.3158404 0 2.394 0.04788 20000 373s 100 1.7101139 0 1.7678302 0.034413192 20548.286 373s 200 2.3115592 0 2.3895743 0.04649702 20556.796 373s 300 1.831333 0 1.8931405 0.041256922 18354.646 373s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 373s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 373s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 373s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 373s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 373s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 373s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 373s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 373s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 373s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 373s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 373s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 373s 1600 2.1414975 -3.9792878 -1.8690882 0.79530679 899.00645 373s 1700 1.9971755 -3.8166601 -1.8380659 0.41343091 945.60821 373s 1800 2.0033499 -3.7524192 -1.7481879 0.76104974 973.71402 373s 1900 2.0083456 -3.7603247 -1.7442111 0.74095065 988.03964 373s 2000 1.952518 -3.6531717 -1.7078819 0.50248125 989.96894 373s Loop time of 0.360131 on 2 procs for 2000 steps with 400 atoms 373s 373s Performance: 959650.946 tau/day, 5553.536 timesteps/s, 2.221 Matom-step/s 373s 96.7% CPU use with 2 MPI tasks x 1 OpenMP threads 373s 373s MPI task timing breakdown: 373s Section | min time | avg time | max time |%varavg| %total 373s --------------------------------------------------------------- 373s Pair | 0.17159 | 0.19284 | 0.21409 | 4.8 | 53.55 373s Neigh | 0.010452 | 0.010669 | 0.010885 | 0.2 | 2.96 373s Comm | 0.034243 | 0.05496 | 0.075677 | 8.8 | 15.26 373s Output | 0.01627 | 0.016301 | 0.016332 | 0.0 | 4.53 373s Modify | 0.076115 | 0.07734 | 0.078566 | 0.4 | 21.48 373s Other | | 0.00802 | | | 2.23 373s 373s Nlocal: 200 ave 211 max 189 min 373s Histogram: 1 0 0 0 0 0 0 0 0 1 373s Nghost: 215 ave 217 max 213 min 373s Histogram: 1 0 0 0 0 0 0 0 0 1 373s Neighs: 1561 ave 1651 max 1471 min 373s Histogram: 1 0 0 0 0 0 0 0 0 1 373s 373s Total # of neighbors = 3122 373s Ave neighs/atom = 7.805 373s Neighbor list builds = 346 373s Dangerous builds = 0 373s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 373s Setting up Verlet run ... 373s Unit style : lj 373s Current step : 2000 373s Time step : 0.002 373s Per MPI rank memory allocation (min/avg/max) = 6.899 | 6.899 | 6.899 Mbytes 373s Step c_rot E_pair TotEng Press Volume 373s 2000 1.952518 -3.6531717 -1.7078819 0.50248125 989.96894 373s 2100 1.9040485 -3.6005672 -1.6802923 0.39862439 989.96894 373s 2200 1.8951971 -3.5921565 -1.6947174 1.0260215 989.96894 373s 2300 2.0029242 -3.7081932 -1.6838651 0.66970247 989.96894 373s 2400 2.0271892 -3.7314226 -1.7100026 0.89700311 989.96894 373s 2500 2.0661249 -3.7753498 -1.7024133 0.57670823 989.96894 373s 2600 2.0610735 -3.7707906 -1.7111976 0.90913324 989.96894 373s 2700 2.0505182 -3.759913 -1.7337449 0.65661806 989.96894 373s 2800 2.1106611 -3.8219493 -1.7370736 0.55275858 989.96894 373s 2900 2.0346954 -3.7427335 -1.7135138 0.69791414 989.96894 373s 3000 2.0331857 -3.7398391 -1.751581 0.051416398 989.96894 373s 3100 1.9983775 -3.7074162 -1.7156494 0.75643227 989.96894 373s 3200 2.1297315 -3.8450391 -1.7173438 1.0595574 989.96894 373s 3300 2.0798058 -3.793496 -1.6857257 1.1572151 989.96894 373s 3400 2.1441179 -3.8596018 -1.7011723 0.61261295 989.96894 373s 3500 2.1035108 -3.8190033 -1.6997662 0.99653756 989.96894 373s 3600 2.0856923 -3.7988484 -1.7184312 1.1264485 989.96894 373s 3700 2.1029212 -3.8148833 -1.7096948 0.96828131 989.96894 373s 3800 2.0253659 -3.7349822 -1.7382292 0.56254829 989.96894 373s 3900 1.9686055 -3.6775217 -1.7283017 1.2472863 989.96894 373s 4000 2.0951026 -3.8095594 -1.6876041 0.79798093 989.96894 373s Loop time of 0.352751 on 2 procs for 2000 steps with 400 atoms 373s 373s Performance: 979727.866 tau/day, 5669.721 timesteps/s, 2.268 Matom-step/s 373s 98.9% CPU use with 2 MPI tasks x 1 OpenMP threads 373s 373s MPI task timing breakdown: 373s Section | min time | avg time | max time |%varavg| %total 373s --------------------------------------------------------------- 373s Pair | 0.24536 | 0.2459 | 0.24643 | 0.1 | 69.71 373s Neigh | 0.0026919 | 0.00303 | 0.003368 | 0.6 | 0.86 373s Comm | 0.03635 | 0.03727 | 0.038191 | 0.5 | 10.57 373s Output | 0.01623 | 0.016375 | 0.016519 | 0.1 | 4.64 373s Modify | 0.037183 | 0.04139 | 0.045596 | 2.1 | 11.73 373s Other | | 0.00879 | | | 2.49 373s 373s Nlocal: 200 ave 227 max 173 min 373s Histogram: 1 0 0 0 0 0 0 0 0 1 373s Nghost: 211 ave 219 max 203 min 373s Histogram: 1 0 0 0 0 0 0 0 0 1 373s Neighs: 1650.5 ave 1950 max 1351 min 373s Histogram: 1 0 0 0 0 0 0 0 0 1 373s 373s Total # of neighbors = 3301 373s Ave neighs/atom = 8.2525 373s Neighbor list builds = 49 373s Dangerous builds = 0 373s Total wall time: 0:00:00 374s LAMMPS (7 Feb 2024 - Update 1) 374s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 374s using 1 OpenMP thread(s) per MPI task 374s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 374s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 374s 1 by 1 by 1 MPI processor grid 374s Created 400 atoms 374s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 374s create_atoms CPU = 0.000 seconds 374s Setting atom values ... 374s 29 settings made for type/fraction 374s Setting atom values ... 374s 371 settings made for mass 374s Setting atom values ... 374s 29 settings made for mass 374s Setting atom values ... 374s 371 settings made for shape 374s Setting atom values ... 374s 29 settings made for shape 374s Setting atom values ... 374s 400 settings made for quat/random 374s 371 atoms in group spheroid 374s 374s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 374s 374s Your simulation uses code contributions which should be cited: 374s - pair gayberne command: doi:10.1063/1.3058435 374s The log file lists these citations in BibTeX format. 374s 374s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 374s 374s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 374s Neighbor list info ... 374s update: every = 1 steps, delay = 0 steps, check = yes 374s max neighbors/atom: 2000, page size: 100000 374s master list distance cutoff = 4.8 374s ghost atom cutoff = 4.8 374s binsize = 2.4, bins = 59 59 3 374s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 374s (1) pair gayberne, perpetual 374s attributes: half, newton on 374s pair build: half/bin/atomonly/newton 374s stencil: half/bin/2d 374s bin: standard 374s Setting up Verlet run ... 374s Unit style : lj 374s Current step : 0 374s Time step : 0.002 374s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 374s Step c_rot E_pair TotEng Press Volume 374s 0 2.3158404 0 2.394 0.04788 20000 374s 100 1.7101139 0 1.7678302 0.034413192 20548.286 374s 200 2.3115592 0 2.3895743 0.04649702 20556.796 374s 300 1.831333 0 1.8931405 0.041256922 18354.646 374s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 374s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 374s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 374s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 374s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 374s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 374s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 374s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 374s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 374s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 374s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 374s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 374s 1600 2.1414975 -3.9792878 -1.8690882 0.79530679 899.00645 374s 1700 1.9971755 -3.8166601 -1.8380659 0.41343092 945.60821 374s 1800 2.0033499 -3.7524192 -1.7481879 0.76104975 973.71402 374s 1900 2.0083456 -3.7603247 -1.7442111 0.74095064 988.03964 374s 2000 1.952518 -3.6531717 -1.7078819 0.50248128 989.96894 374s Loop time of 0.56878 on 1 procs for 2000 steps with 400 atoms 374s 374s Performance: 607616.575 tau/day, 3516.300 timesteps/s, 1.407 Matom-step/s 374s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 374s 374s MPI task timing breakdown: 374s Section | min time | avg time | max time |%varavg| %total 374s --------------------------------------------------------------- 374s Pair | 0.37969 | 0.37969 | 0.37969 | 0.0 | 66.76 375s Neigh | 0.020122 | 0.020122 | 0.020122 | 0.0 | 3.54 375s Comm | 0.010605 | 0.010605 | 0.010605 | 0.0 | 1.86 375s Output | 0.019144 | 0.019144 | 0.019144 | 0.0 | 3.37 375s Modify | 0.13375 | 0.13375 | 0.13375 | 0.0 | 23.52 375s Other | | 0.005467 | | | 0.96 375s 375s Nlocal: 400 ave 400 max 400 min 375s Histogram: 1 0 0 0 0 0 0 0 0 0 375s Nghost: 276 ave 276 max 276 min 375s Histogram: 1 0 0 0 0 0 0 0 0 0 375s Neighs: 3122 ave 3122 max 3122 min 375s Histogram: 1 0 0 0 0 0 0 0 0 0 375s 375s Total # of neighbors = 3122 375s Ave neighs/atom = 7.805 375s Neighbor list builds = 346 375s Dangerous builds = 0 375s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 375s Setting up Verlet run ... 375s Unit style : lj 375s Current step : 2000 375s Time step : 0.002 375s Per MPI rank memory allocation (min/avg/max) = 6.926 | 6.926 | 6.926 Mbytes 375s Step c_rot E_pair TotEng Press Volume 375s 2000 1.952518 -3.6531717 -1.7078819 0.50248128 989.96894 375s 2100 1.9040485 -3.6005672 -1.6802923 0.39862438 989.96894 375s 2200 1.8951971 -3.5921566 -1.6947174 1.0260215 989.96894 375s 2300 2.0029244 -3.7081934 -1.6838652 0.66970135 989.96894 375s 2400 2.0271885 -3.731422 -1.7100022 0.89700608 989.96894 375s 2500 2.066122 -3.7753468 -1.7024127 0.57671483 989.96894 375s 2600 2.0610701 -3.7707871 -1.7111979 0.90915268 989.96894 375s 2700 2.0505226 -3.7599192 -1.7337496 0.65661546 989.96894 375s 2800 2.1106391 -3.8219307 -1.7370733 0.55280503 989.96894 375s 2900 2.0347598 -3.7428025 -1.7135189 0.69781833 989.96894 375s 3000 2.0330208 -3.7396616 -1.7515118 0.052338568 989.96894 375s 3100 1.9979524 -3.7070895 -1.715955 0.75689837 989.96894 375s 3200 2.1279004 -3.8431144 -1.7172074 1.0681978 989.96894 375s 3300 2.0795122 -3.7933999 -1.6843677 1.160141 989.96894 375s 3400 2.1458506 -3.8618217 -1.7011471 0.60302387 989.96894 375s 3500 2.0922186 -3.8066733 -1.7042032 1.020929 989.96894 375s 3600 2.0923687 -3.8049721 -1.7151823 0.97720853 989.96894 375s 3700 2.1082732 -3.8201734 -1.6945215 0.97495003 989.96894 375s 3800 2.0883146 -3.8011237 -1.6897726 0.59373082 989.96894 375s 3900 2.1821449 -3.8971145 -1.6976484 0.53241288 989.96894 375s 4000 2.103916 -3.8154046 -1.6865256 0.96939819 989.96894 375s Loop time of 0.612938 on 1 procs for 2000 steps with 400 atoms 375s 375s Performance: 563841.913 tau/day, 3262.974 timesteps/s, 1.305 Matom-step/s 375s 99.6% CPU use with 1 MPI tasks x 1 OpenMP threads 375s 375s MPI task timing breakdown: 375s Section | min time | avg time | max time |%varavg| %total 375s --------------------------------------------------------------- 375s Pair | 0.49065 | 0.49065 | 0.49065 | 0.0 | 80.05 375s Neigh | 0.0059027 | 0.0059027 | 0.0059027 | 0.0 | 0.96 375s Comm | 0.011665 | 0.011665 | 0.011665 | 0.0 | 1.90 375s Output | 0.018918 | 0.018918 | 0.018918 | 0.0 | 3.09 375s Modify | 0.081479 | 0.081479 | 0.081479 | 0.0 | 13.29 375s Other | | 0.004322 | | | 0.71 375s 375s Nlocal: 400 ave 400 max 400 min 375s Histogram: 1 0 0 0 0 0 0 0 0 0 375s Nghost: 284 ave 284 max 284 min 375s Histogram: 1 0 0 0 0 0 0 0 0 0 375s Neighs: 3287 ave 3287 max 3287 min 375s Histogram: 1 0 0 0 0 0 0 0 0 0 375s 375s Total # of neighbors = 3287 375s Ave neighs/atom = 8.2175 375s Neighbor list builds = 51 375s Dangerous builds = 0 375s Total wall time: 0:00:01 375s LAMMPS (7 Feb 2024 - Update 1) 375s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 375s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 375s using 1 OpenMP thread(s) per MPI task 375s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 375s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 375s 2 by 1 by 1 MPI processor grid 375s Created 400 atoms 375s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 375s create_atoms CPU = 0.000 seconds 375s Setting atom values ... 375s 29 settings made for type/fraction 375s Setting atom values ... 375s 371 settings made for mass 375s Setting atom values ... 375s 29 settings made for mass 375s Setting atom values ... 375s 371 settings made for shape 375s Setting atom values ... 375s 29 settings made for shape 375s Setting atom values ... 375s 400 settings made for quat/random 375s 371 atoms in group spheroid 375s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 375s Neighbor list info ... 375s update: every = 1 steps, delay = 0 steps, check = yes 375s max neighbors/atom: 2000, page size: 100000 375s master list distance cutoff = 4.8 375s ghost atom cutoff = 4.8 375s binsize = 2.4, bins = 59 59 3 375s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 375s (1) pair resquared, perpetual 375s attributes: half, newton on 375s pair build: half/bin/atomonly/newton 375s stencil: half/bin/2d 375s bin: standard 375s Setting up Verlet run ... 375s Unit style : lj 375s Current step : 0 375s Time step : 0.002 375s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 375s Step c_rot E_pair TotEng Press Volume 375s 0 2.3158404 0 2.394 0.04788 20000 375s 100 1.7101139 0 1.7678302 0.034413192 20548.286 375s 200 2.3115592 0 2.3895743 0.04649702 20556.796 375s 300 1.831333 0 1.8931405 0.041256922 18354.646 375s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 375s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 375s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 375s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 375s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 375s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 375s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 375s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 375s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 375s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 375s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 375s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 375s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 375s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 375s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 375s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 375s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 375s Loop time of 0.542425 on 2 procs for 2000 steps with 400 atoms 375s 375s Performance: 637139.047 tau/day, 3687.147 timesteps/s, 1.475 Matom-step/s 375s 97.9% CPU use with 2 MPI tasks x 1 OpenMP threads 375s 375s MPI task timing breakdown: 375s Section | min time | avg time | max time |%varavg| %total 375s --------------------------------------------------------------- 375s Pair | 0.3818 | 0.39026 | 0.39871 | 1.4 | 71.95 375s Neigh | 0.010648 | 0.010708 | 0.010768 | 0.1 | 1.97 375s Comm | 0.03112 | 0.039658 | 0.048197 | 4.3 | 7.31 375s Output | 0.015811 | 0.015972 | 0.016134 | 0.1 | 2.94 375s Modify | 0.077384 | 0.077934 | 0.078483 | 0.2 | 14.37 375s Other | | 0.007897 | | | 1.46 375s 375s Nlocal: 200 ave 210 max 190 min 375s Histogram: 1 0 0 0 0 0 0 0 0 1 375s Nghost: 164 ave 168 max 160 min 375s Histogram: 1 0 0 0 0 0 0 0 0 1 375s Neighs: 910 ave 958 max 862 min 375s Histogram: 1 0 0 0 0 0 0 0 0 1 375s 375s Total # of neighbors = 1820 375s Ave neighs/atom = 4.55 375s Neighbor list builds = 420 375s Dangerous builds = 0 375s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 375s Setting up Verlet run ... 375s Unit style : lj 375s Current step : 2000 375s Time step : 0.002 375s Per MPI rank memory allocation (min/avg/max) = 6.89 | 6.89 | 6.89 Mbytes 375s Step c_rot E_pair TotEng Press Volume 375s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 375s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 376s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 376s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 376s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 376s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 376s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 376s 2700 2.0106221 0.13364602 2.1384766 1.1322764 1639.6982 376s 2800 1.9890373 0.15589592 2.1204126 1.2343376 1639.6982 376s 2900 1.9922852 0.15256975 2.0956529 1.2419165 1639.6982 376s 3000 1.9618081 0.18405955 2.1392907 1.3468024 1639.6982 376s 3100 1.920815 0.22640753 2.1223513 1.6487874 1639.6982 376s 3200 1.9201455 0.22718151 2.1360379 1.537008 1639.6982 376s 3300 2.0073207 0.13690691 2.1185858 1.1973827 1639.6982 376s 3400 2.0179674 0.12601938 2.1227815 1.0847666 1639.6982 376s 3500 1.9561038 0.18991636 2.11504 1.3377604 1639.6982 376s 3600 1.9971208 0.14756321 2.1401442 1.2026471 1639.6982 376s 3700 1.9731986 0.17227975 2.1472974 1.2730305 1639.6982 376s 3800 2.0000945 0.1444447 2.0994588 1.1502433 1639.6982 376s 3900 1.9911415 0.15372488 2.1423535 1.227966 1639.6982 376s 4000 1.9822293 0.16299254 2.0899439 1.2166942 1639.6982 376s Loop time of 0.831928 on 2 procs for 2000 steps with 400 atoms 376s 376s Performance: 415420.669 tau/day, 2404.055 timesteps/s, 961.622 katom-step/s 376s 99.4% CPU use with 2 MPI tasks x 1 OpenMP threads 376s 376s MPI task timing breakdown: 376s Section | min time | avg time | max time |%varavg| %total 376s --------------------------------------------------------------- 376s Pair | 0.6716 | 0.70513 | 0.73867 | 4.0 | 84.76 376s Neigh | 0.0020724 | 0.0022544 | 0.0024364 | 0.4 | 0.27 376s Comm | 0.025978 | 0.059644 | 0.09331 | 13.8 | 7.17 376s Output | 0.016168 | 0.016276 | 0.016383 | 0.1 | 1.96 376s Modify | 0.039083 | 0.041429 | 0.043776 | 1.2 | 4.98 376s Other | | 0.007193 | | | 0.86 376s 376s Nlocal: 200 ave 212 max 188 min 376s Histogram: 1 0 0 0 0 0 0 0 0 1 376s Nghost: 171.5 ave 173 max 170 min 376s Histogram: 1 0 0 0 0 0 0 0 0 1 376s Neighs: 880.5 ave 946 max 815 min 376s Histogram: 1 0 0 0 0 0 0 0 0 1 376s 376s Total # of neighbors = 1761 376s Ave neighs/atom = 4.4025 376s Neighbor list builds = 49 376s Dangerous builds = 0 376s Total wall time: 0:00:01 376s LAMMPS (7 Feb 2024 - Update 1) 377s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 377s using 1 OpenMP thread(s) per MPI task 377s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 377s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 377s 1 by 1 by 1 MPI processor grid 377s Created 400 atoms 377s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 377s create_atoms CPU = 0.000 seconds 377s Setting atom values ... 377s 29 settings made for type/fraction 377s Setting atom values ... 377s 371 settings made for mass 377s Setting atom values ... 377s 29 settings made for mass 377s Setting atom values ... 377s 371 settings made for shape 377s Setting atom values ... 377s 29 settings made for shape 377s Setting atom values ... 377s 400 settings made for quat/random 377s 371 atoms in group spheroid 377s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 377s Neighbor list info ... 377s update: every = 1 steps, delay = 0 steps, check = yes 377s max neighbors/atom: 2000, page size: 100000 377s master list distance cutoff = 4.8 377s ghost atom cutoff = 4.8 377s binsize = 2.4, bins = 59 59 3 377s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 377s (1) pair resquared, perpetual 377s attributes: half, newton on 377s pair build: half/bin/atomonly/newton 377s stencil: half/bin/2d 377s bin: standard 377s Setting up Verlet run ... 377s Unit style : lj 377s Current step : 0 377s Time step : 0.002 377s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 377s Step c_rot E_pair TotEng Press Volume 377s 0 2.3158404 0 2.394 0.04788 20000 377s 100 1.7101139 0 1.7678302 0.034413192 20548.286 377s 200 2.3115592 0 2.3895743 0.04649702 20556.796 377s 300 1.831333 0 1.8931405 0.041256922 18354.646 377s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 377s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 377s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 377s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 377s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 377s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 377s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 377s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 377s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 377s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 377s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 377s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 377s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 377s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 377s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 377s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 377s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 377s Loop time of 0.965994 on 1 procs for 2000 steps with 400 atoms 377s 377s Performance: 357766.320 tau/day, 2070.407 timesteps/s, 828.163 katom-step/s 377s 99.6% CPU use with 1 MPI tasks x 1 OpenMP threads 377s 377s MPI task timing breakdown: 377s Section | min time | avg time | max time |%varavg| %total 377s --------------------------------------------------------------- 377s Pair | 0.77722 | 0.77722 | 0.77722 | 0.0 | 80.46 377s Neigh | 0.021151 | 0.021151 | 0.021151 | 0.0 | 2.19 377s Comm | 0.007953 | 0.007953 | 0.007953 | 0.0 | 0.82 377s Output | 0.019009 | 0.019009 | 0.019009 | 0.0 | 1.97 377s Modify | 0.13488 | 0.13488 | 0.13488 | 0.0 | 13.96 379s Other | | 0.005779 | | | 0.60 379s 379s Nlocal: 400 ave 400 max 400 min 379s Histogram: 1 0 0 0 0 0 0 0 0 0 379s Nghost: 206 ave 206 max 206 min 379s Histogram: 1 0 0 0 0 0 0 0 0 0 379s Neighs: 1820 ave 1820 max 1820 min 379s Histogram: 1 0 0 0 0 0 0 0 0 0 379s 379s Total # of neighbors = 1820 379s Ave neighs/atom = 4.55 379s Neighbor list builds = 420 379s Dangerous builds = 0 379s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 379s Setting up Verlet run ... 379s Unit style : lj 379s Current step : 2000 379s Time step : 0.002 379s Per MPI rank memory allocation (min/avg/max) = 6.917 | 6.917 | 6.917 Mbytes 379s Step c_rot E_pair TotEng Press Volume 379s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 379s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 379s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 379s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 379s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 379s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 379s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 379s 2700 2.0106221 0.13364602 2.1384766 1.1322764 1639.6982 379s 2800 1.9890373 0.15589593 2.1204126 1.2343376 1639.6982 379s 2900 1.9922852 0.15256971 2.0956529 1.2419163 1639.6982 379s 3000 1.9618081 0.18405956 2.1392907 1.3468024 1639.6982 379s 3100 1.9208147 0.22640783 2.1223514 1.6487893 1639.6982 379s 3200 1.9201454 0.2271816 2.136038 1.5370083 1639.6982 379s 3300 2.0073199 0.13690769 2.1185864 1.1973892 1639.6982 379s 3400 2.0179674 0.12601938 2.1227814 1.0847667 1639.6982 379s 3500 1.9561059 0.1899142 2.1150384 1.3377509 1639.6982 379s 3600 1.9971218 0.14756225 2.1401434 1.2026401 1639.6982 379s 3700 1.9731874 0.17229133 2.1473283 1.2730808 1639.6982 379s 3800 2.0000992 0.14443988 2.0994807 1.1502356 1639.6982 379s 3900 1.9911429 0.15372349 2.1424035 1.227982 1639.6982 379s 4000 1.9823333 0.16288519 2.0899581 1.2162824 1639.6982 379s Loop time of 1.54031 on 1 procs for 2000 steps with 400 atoms 379s 379s Performance: 224370.090 tau/day, 1298.438 timesteps/s, 519.375 katom-step/s 379s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 379s 379s MPI task timing breakdown: 379s Section | min time | avg time | max time |%varavg| %total 379s --------------------------------------------------------------- 379s Pair | 1.4197 | 1.4197 | 1.4197 | 0.0 | 92.17 379s Neigh | 0.0042969 | 0.0042969 | 0.0042969 | 0.0 | 0.28 379s Comm | 0.0092605 | 0.0092605 | 0.0092605 | 0.0 | 0.60 379s Output | 0.01934 | 0.01934 | 0.01934 | 0.0 | 1.26 379s Modify | 0.083043 | 0.083043 | 0.083043 | 0.0 | 5.39 379s Other | | 0.004624 | | | 0.30 379s 379s Nlocal: 400 ave 400 max 400 min 379s Histogram: 1 0 0 0 0 0 0 0 0 0 379s Nghost: 215 ave 215 max 215 min 379s Histogram: 1 0 0 0 0 0 0 0 0 0 379s Neighs: 1761 ave 1761 max 1761 min 379s Histogram: 1 0 0 0 0 0 0 0 0 0 379s 379s Total # of neighbors = 1761 379s Ave neighs/atom = 4.4025 379s Neighbor list builds = 49 379s Dangerous builds = 0 379s Total wall time: 0:00:02 379s run: OK 379s autopkgtest [01:23:50]: test ellipse: -----------------------] 380s autopkgtest [01:23:51]: test ellipse: - - - - - - - - - - results - - - - - - - - - - 380s ellipse PASS 380s autopkgtest [01:23:51]: test flow: preparing testbed 380s Reading package lists... 381s Building dependency tree... 381s Reading state information... 381s Starting pkgProblemResolver with broken count: 0 381s Starting 2 pkgProblemResolver with broken count: 0 381s Done 382s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 383s autopkgtest [01:23:54]: test flow: [----------------------- 383s LAMMPS (7 Feb 2024 - Update 1) 383s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 383s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 383s using 1 OpenMP thread(s) per MPI task 383s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 383s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 383s 2 by 1 by 1 MPI processor grid 383s Created 420 atoms 383s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 383s create_atoms CPU = 0.001 seconds 383s 60 atoms in group lower 383s 60 atoms in group upper 383s 120 atoms in group boundary 383s 300 atoms in group flow 383s Setting atom values ... 383s 60 settings made for type 383s Setting atom values ... 383s 60 settings made for type 383s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 383s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 383s Neighbor list info ... 383s update: every = 1 steps, delay = 5 steps, check = yes 383s max neighbors/atom: 2000, page size: 100000 383s master list distance cutoff = 1.42246 383s ghost atom cutoff = 1.42246 383s binsize = 0.71123, bins = 37 32 1 383s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 383s (1) pair lj/cut, perpetual 383s attributes: half, newton on 383s pair build: half/bin/atomonly/newton 383s stencil: half/bin/2d 383s bin: standard 383s Setting up Verlet run ... 383s Unit style : lj 383s Current step : 0 383s Time step : 0.003 383s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 383s Step Temp E_pair E_mol TotEng Press Volume 383s 0 1 0 0 0.71190476 0.52314537 571.54286 383s 500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286 383s 1000 1 -0.3731019 0 0.33880286 2.8561715 571.54286 383s 1500 1.0366879 -0.36031105 0 0.37771198 3.0196355 571.54286 383s 2000 1 -0.41053025 0 0.30137451 2.8651905 571.54286 383s 2500 1.1226126 -0.37018872 0 0.42900451 2.9459225 571.54286 383s 3000 1 -0.40149829 0 0.31040647 2.7056256 571.54286 383s 3500 1.071429 -0.46774125 0 0.29501417 2.5582838 571.54286 383s 4000 1 -0.39054248 0 0.32136228 2.4314528 571.54286 383s 4500 1.029458 -0.40311018 0 0.32976584 2.5012442 571.54286 383s 5000 1 -0.44252019 0 0.26938457 2.3566317 571.54286 383s 5500 1.0715559 -0.4771158 0 0.28572997 2.420979 571.54286 383s 6000 1 -0.42490153 0 0.28700323 2.4032097 571.54286 383s 6500 1.1729217 -0.43515146 0 0.39985708 2.3670704 571.54286 383s 7000 1 -0.4539943 0 0.25791046 2.36148 571.54286 383s 7500 1.1676524 -0.40784405 0 0.42341328 2.699336 571.54286 383s 8000 1 -0.37626352 0 0.33564124 2.8174026 571.54286 383s 8500 1.1583539 -0.41258281 0 0.41205487 2.6617634 571.54286 383s 9000 1 -0.42918407 0 0.28272069 2.3090418 571.54286 383s 9500 1.0432103 -0.39042315 0 0.3522432 2.6910698 571.54286 383s 10000 1 -0.4676995 0 0.24420526 2.3898708 571.54286 383s Loop time of 0.166634 on 2 procs for 10000 steps with 420 atoms 383s 383s Performance: 15555071.847 tau/day, 60011.851 timesteps/s, 25.205 Matom-step/s 383s 94.7% CPU use with 2 MPI tasks x 1 OpenMP threads 383s 383s MPI task timing breakdown: 383s Section | min time | avg time | max time |%varavg| %total 383s --------------------------------------------------------------- 383s Pair | 0.035851 | 0.036 | 0.036148 | 0.1 | 21.60 383s Neigh | 0.019885 | 0.020021 | 0.020156 | 0.1 | 12.01 383s Comm | 0.063796 | 0.065012 | 0.066228 | 0.5 | 39.02 383s Output | 0.0004286 | 0.0026636 | 0.0048986 | 4.3 | 1.60 383s Modify | 0.025884 | 0.026007 | 0.02613 | 0.1 | 15.61 383s Other | | 0.01693 | | | 10.16 383s 383s Nlocal: 210 ave 214 max 206 min 383s Histogram: 1 0 0 0 0 0 0 0 0 1 383s Nghost: 51 ave 52 max 50 min 383s Histogram: 1 0 0 0 0 0 0 0 0 1 383s Neighs: 472 ave 494 max 450 min 383s Histogram: 1 0 0 0 0 0 0 0 0 1 383s 383s Total # of neighbors = 944 383s Ave neighs/atom = 2.247619 383s Neighbor list builds = 994 383s Dangerous builds = 0 383s Total wall time: 0:00:00 384s LAMMPS (7 Feb 2024 - Update 1) 384s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 384s using 1 OpenMP thread(s) per MPI task 384s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 384s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 384s 1 by 1 by 1 MPI processor grid 384s Created 420 atoms 384s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 384s create_atoms CPU = 0.000 seconds 384s 60 atoms in group lower 384s 60 atoms in group upper 384s 120 atoms in group boundary 384s 300 atoms in group flow 384s Setting atom values ... 384s 60 settings made for type 384s Setting atom values ... 384s 60 settings made for type 384s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 384s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 384s Neighbor list info ... 384s update: every = 1 steps, delay = 5 steps, check = yes 384s max neighbors/atom: 2000, page size: 100000 384s master list distance cutoff = 1.42246 384s ghost atom cutoff = 1.42246 384s binsize = 0.71123, bins = 37 32 1 384s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 384s (1) pair lj/cut, perpetual 384s attributes: half, newton on 384s pair build: half/bin/atomonly/newton 384s stencil: half/bin/2d 384s bin: standard 384s Setting up Verlet run ... 384s Unit style : lj 384s Current step : 0 384s Time step : 0.003 384s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 384s Step Temp E_pair E_mol TotEng Press Volume 384s 0 1 0 0 0.71190476 0.52314537 571.54286 384s 500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286 384s 1000 1 -0.42965445 0 0.28225032 2.9612165 571.54286 384s 1500 1.0739874 -0.41189772 0 0.35267901 2.5621951 571.54286 384s 2000 1 -0.40814262 0 0.30376214 2.9229597 571.54286 384s 2500 1.193035 -0.38493995 0 0.46438736 2.8340607 571.54286 384s 3000 1 -0.45564537 0 0.2562594 2.7506498 571.54286 384s 3500 1.0626882 -0.45013361 0 0.30639918 2.5530157 571.54286 384s 4000 1 -0.39613722 0 0.31576755 2.4669827 571.54286 384s 4500 1.0832856 -0.43003699 0 0.34115919 2.2569491 571.54286 384s 5000 1 -0.42733451 0 0.28457025 2.4685826 571.54286 384s 5500 1.0413391 -0.39346589 0 0.34786835 2.6348761 571.54286 384s 6000 1 -0.42845926 0 0.2834455 2.4988125 571.54286 384s 6500 1.0890296 -0.43775517 0 0.33753016 2.4384217 571.54286 384s 7000 1 -0.46023483 0 0.25166993 2.4429964 571.54286 384s 7500 1.0644341 -0.45175861 0 0.3060171 2.4324515 571.54286 384s 8000 1 -0.43920605 0 0.27269871 2.6469713 571.54286 384s 8500 1.0647184 -0.45399641 0 0.3039817 2.5748114 571.54286 384s 9000 1 -0.46453995 0 0.24736482 2.6591355 571.54286 384s 9500 1.0123 -0.44029216 0 0.28036906 2.413597 571.54286 384s 10000 1 -0.43826448 0 0.27364028 2.3699706 571.54286 384s Loop time of 0.183115 on 1 procs for 10000 steps with 420 atoms 384s 384s Performance: 14155025.037 tau/day, 54610.436 timesteps/s, 22.936 Matom-step/s 384s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 384s 384s MPI task timing breakdown: 384s Section | min time | avg time | max time |%varavg| %total 384s --------------------------------------------------------------- 384s Pair | 0.072154 | 0.072154 | 0.072154 | 0.0 | 39.40 384s Neigh | 0.03945 | 0.03945 | 0.03945 | 0.0 | 21.54 384s Comm | 0.0061798 | 0.0061798 | 0.0061798 | 0.0 | 3.37 384s Output | 0.00036943 | 0.00036943 | 0.00036943 | 0.0 | 0.20 384s Modify | 0.048404 | 0.048404 | 0.048404 | 0.0 | 26.43 384s Other | | 0.01656 | | | 9.04 384s 384s Nlocal: 420 ave 420 max 420 min 384s Histogram: 1 0 0 0 0 0 0 0 0 0 384s Nghost: 50 ave 50 max 50 min 384s Histogram: 1 0 0 0 0 0 0 0 0 0 384s Neighs: 946 ave 946 max 946 min 384s Histogram: 1 0 0 0 0 0 0 0 0 0 384s 384s Total # of neighbors = 946 384s Ave neighs/atom = 2.252381 384s Neighbor list builds = 979 384s Dangerous builds = 0 384s Total wall time: 0:00:00 384s LAMMPS (7 Feb 2024 - Update 1) 384s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 384s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 384s using 1 OpenMP thread(s) per MPI task 384s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 384s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 384s 2 by 1 by 1 MPI processor grid 384s Created 420 atoms 384s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 384s create_atoms CPU = 0.000 seconds 384s 60 atoms in group lower 384s 60 atoms in group upper 384s 120 atoms in group boundary 384s 300 atoms in group flow 384s Setting atom values ... 384s 60 settings made for type 384s Setting atom values ... 384s 60 settings made for type 384s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 384s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 384s Neighbor list info ... 384s update: every = 1 steps, delay = 5 steps, check = yes 384s max neighbors/atom: 2000, page size: 100000 384s master list distance cutoff = 1.42246 384s ghost atom cutoff = 1.42246 384s binsize = 0.71123, bins = 37 32 1 384s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 384s (1) pair lj/cut, perpetual 384s attributes: half, newton on 384s pair build: half/bin/atomonly/newton 384s stencil: half/bin/2d 384s bin: standard 384s Setting up Verlet run ... 384s Unit style : lj 384s Current step : 0 384s Time step : 0.003 384s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 384s Step Temp E_pair E_mol TotEng Press Volume 384s 0 1 0 0 0.71190476 0.52314537 571.54286 384s 500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659 384s 1000 1 -0.35701441 0 0.35489035 2.0575313 585.71407 384s 1500 1.2368663 -0.37709732 0 0.50343367 1.4865879 587.193 384s 2000 1 -0.39362939 0 0.31827537 1.4236 578.9418 384s 2500 1.2272957 -0.42381901 0 0.44989865 1.4544608 570.15856 384s 3000 1 -0.4914342 0 0.22047056 1.534595 554.98633 384s 3500 1.2444794 -0.59760758 0 0.2883432 1.8754993 537.01599 384s 4000 1 -0.69890444 0 0.013000318 2.1406234 521.49815 384s 4500 1.2188346 -0.74991278 0 0.1177814 2.7508733 507.73977 384s 5000 1 -0.7445329 0 -0.032628135 3.1054873 501.68859 384s 5500 1.1836415 -0.76775125 0 0.074888789 2.6990153 506.01181 384s 6000 1 -0.7575268 0 -0.04562204 2.4858442 508.26846 384s 6500 1.2076032 -0.68884147 0 0.17085699 2.3143206 512.291 384s 7000 1 -0.66241571 0 0.049489051 2.0686009 516.38744 384s 7500 1.2123711 -0.71994819 0 0.14314459 2.1753937 513.88371 384s 8000 1 -0.71001477 0 0.0018899921 2.0630419 509.80458 384s 8500 1.1991563 -0.78355267 0 0.070132412 2.493712 504.22835 384s 9000 1 -0.72719051 0 -0.015285749 2.27793 505.75742 384s 9500 1.2073739 -0.76518329 0 0.094351911 2.5653732 503.29071 384s 10000 1 -0.78638614 0 -0.074481378 2.3564468 504.38491 384s Loop time of 0.18093 on 2 procs for 10000 steps with 420 atoms 384s 384s Performance: 14325969.795 tau/day, 55269.945 timesteps/s, 23.213 Matom-step/s 384s 97.2% CPU use with 2 MPI tasks x 1 OpenMP threads 384s 384s MPI task timing breakdown: 384s Section | min time | avg time | max time |%varavg| %total 384s --------------------------------------------------------------- 384s Pair | 0.039681 | 0.039865 | 0.04005 | 0.1 | 22.03 384s Neigh | 0.011766 | 0.011917 | 0.012068 | 0.1 | 6.59 384s Comm | 0.055639 | 0.055912 | 0.056184 | 0.1 | 30.90 384s Output | 0.00033102 | 0.0013444 | 0.0023579 | 2.8 | 0.74 384s Modify | 0.054575 | 0.054627 | 0.054679 | 0.0 | 30.19 384s Other | | 0.01726 | | | 9.54 384s 384s Nlocal: 210 ave 211 max 209 min 384s Histogram: 1 0 0 0 0 0 0 0 0 1 384s Nghost: 50 ave 51 max 49 min 384s Histogram: 1 0 0 0 0 0 0 0 0 1 384s Neighs: 563.5 ave 569 max 558 min 384s Histogram: 1 0 0 0 0 0 0 0 0 1 384s 384s Total # of neighbors = 1127 384s Ave neighs/atom = 2.6833333 384s Neighbor list builds = 560 384s Dangerous builds = 0 384s Total wall time: 0:00:00 384s LAMMPS (7 Feb 2024 - Update 1) 384s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 384s using 1 OpenMP thread(s) per MPI task 384s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 384s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 384s 1 by 1 by 1 MPI processor grid 384s Created 420 atoms 384s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 384s create_atoms CPU = 0.000 seconds 384s 60 atoms in group lower 384s 60 atoms in group upper 384s 120 atoms in group boundary 384s 300 atoms in group flow 384s Setting atom values ... 384s 60 settings made for type 384s Setting atom values ... 384s 60 settings made for type 384s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 384s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 384s Neighbor list info ... 384s update: every = 1 steps, delay = 5 steps, check = yes 384s max neighbors/atom: 2000, page size: 100000 384s master list distance cutoff = 1.42246 384s ghost atom cutoff = 1.42246 384s binsize = 0.71123, bins = 37 32 1 384s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 384s (1) pair lj/cut, perpetual 384s attributes: half, newton on 384s pair build: half/bin/atomonly/newton 384s stencil: half/bin/2d 384s bin: standard 384s Setting up Verlet run ... 384s Unit style : lj 384s Current step : 0 384s Time step : 0.003 384s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 384s Step Temp E_pair E_mol TotEng Press Volume 384s 0 1 0 0 0.71190476 0.52314537 571.54286 384s 500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806 384s 1000 1 -0.34609791 0 0.36580685 1.9736175 584.67179 384s 1500 1.2112861 -0.39062708 0 0.47169327 1.521881 587.24778 384s 2000 1 -0.39956949 0 0.31233527 1.2496669 583.00676 384s 2500 1.2236323 -0.40128447 0 0.46982521 1.427689 570.03729 384s 3000 1 -0.48849374 0 0.22341102 1.5091345 553.64637 384s 3500 1.2404604 -0.63017693 0 0.25291274 1.7681156 535.22588 384s 4000 1 -0.71303348 0 -0.001128721 2.2083475 516.7312 384s 4500 1.2316246 -0.77421749 0 0.10258194 2.5788522 503.1817 384s 5000 1 -0.7999552 0 -0.088050433 3.1546066 498.48431 384s 5500 1.2347442 -0.74592478 0 0.13309548 2.695455 502.87799 384s 6000 1 -0.67044678 0 0.041457981 2.2074541 513.82275 384s 6500 1.2102356 -0.63751404 0 0.22405846 1.9921588 517.21223 384s 7000 1 -0.65043667 0 0.061468095 1.8816222 517.22883 384s 7500 1.2366099 -0.68011129 0 0.20023717 2.0387578 515.33777 384s 8000 1 -0.72046833 0 -0.0085635721 2.1380846 510.42066 384s 8500 1.2219154 -0.79786917 0 0.072018214 2.2824348 503.99311 384s 9000 1 -0.78517366 0 -0.073268895 2.6920699 500.15016 384s 9500 1.1934208 -0.7468438 0 0.10275813 2.4971524 501.17896 384s 10000 1 -0.67478993 0 0.037114833 2.3681765 504.37054 384s Loop time of 0.212114 on 1 procs for 10000 steps with 420 atoms 384s 384s Performance: 12219856.375 tau/day, 47144.508 timesteps/s, 19.801 Matom-step/s 384s 99.6% CPU use with 1 MPI tasks x 1 OpenMP threads 384s 384s MPI task timing breakdown: 384s Section | min time | avg time | max time |%varavg| %total 384s --------------------------------------------------------------- 384s Pair | 0.077439 | 0.077439 | 0.077439 | 0.0 | 36.51 384s Neigh | 0.022395 | 0.022395 | 0.022395 | 0.0 | 10.56 384s Comm | 0.0050536 | 0.0050536 | 0.0050536 | 0.0 | 2.38 384s Output | 0.00033315 | 0.00033315 | 0.00033315 | 0.0 | 0.16 384s Modify | 0.091336 | 0.091336 | 0.091336 | 0.0 | 43.06 384s Other | | 0.01556 | | | 7.33 384s 384s Nlocal: 420 ave 420 max 420 min 384s Histogram: 1 0 0 0 0 0 0 0 0 0 384s Nghost: 51 ave 51 max 51 min 384s Histogram: 1 0 0 0 0 0 0 0 0 0 384s Neighs: 1150 ave 1150 max 1150 min 384s Histogram: 1 0 0 0 0 0 0 0 0 0 384s 384s Total # of neighbors = 1150 384s Ave neighs/atom = 2.7380952 384s Neighbor list builds = 563 384s Dangerous builds = 0 384s Total wall time: 0:00:00 384s run: OK 385s autopkgtest [01:23:56]: test flow: -----------------------] 385s flow PASS 385s autopkgtest [01:23:56]: test flow: - - - - - - - - - - results - - - - - - - - - - 386s autopkgtest [01:23:57]: test friction: preparing testbed 386s Reading package lists... 386s Building dependency tree... 386s Reading state information... 387s Starting pkgProblemResolver with broken count: 0 387s Starting 2 pkgProblemResolver with broken count: 0 387s Done 387s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 388s autopkgtest [01:23:59]: test friction: [----------------------- 389s LAMMPS (7 Feb 2024 - Update 1) 389s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 389s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 389s using 1 OpenMP thread(s) per MPI task 389s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 389s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 389s 2 by 1 by 1 MPI processor grid 389s Created 750 atoms 389s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 389s create_atoms CPU = 0.000 seconds 389s Created 750 atoms 389s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 389s create_atoms CPU = 0.000 seconds 389s Created 112 atoms 389s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 389s create_atoms CPU = 0.000 seconds 389s Created 112 atoms 389s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 389s create_atoms CPU = 0.000 seconds 389s 750 atoms in group lo 389s 862 atoms in group lo 389s 750 atoms in group hi 389s 862 atoms in group hi 389s 150 atoms in group lo-fixed 389s 150 atoms in group hi-fixed 389s 300 atoms in group boundary 389s 1424 atoms in group mobile 389s Setting atom values ... 389s 150 settings made for type 389s Setting atom values ... 389s 150 settings made for type 389s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 389s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 389s Neighbor list info ... 389s update: every = 1 steps, delay = 5 steps, check = yes 389s max neighbors/atom: 2000, page size: 100000 389s master list distance cutoff = 2.8 389s ghost atom cutoff = 2.8 389s binsize = 1.4, bins = 41 31 1 389s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 389s (1) pair lj/cut, perpetual 389s attributes: half, newton on 389s pair build: half/bin/atomonly/newton 389s stencil: half/bin/2d 389s bin: standard 389s Setting up Verlet run ... 389s Unit style : lj 389s Current step : 0 389s Time step : 0.0025 389s Per MPI rank memory allocation (min/avg/max) = 3.05 | 3.05 | 3.05 Mbytes 389s Step Temp E_pair E_mol TotEng Press Volume 389s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 389s 1000 0.081091635 -3.0930924 0 -3.0596257 -0.030127914 2444.9333 389s 2000 0.082087761 -3.0850474 0 -3.0511696 -0.44306626 2444.9333 389s 3000 0.088948343 -3.08139 0 -3.0446807 -0.25586469 2444.9333 389s 4000 0.091186493 -3.0656845 0 -3.0280515 -0.10060397 2444.9333 389s 5000 0.10802896 -3.0566391 0 -3.0120553 -0.13618814 2444.9333 389s 6000 0.1 -3.0489246 0 -3.0076543 -0.20314788 2444.9333 389s 7000 0.11587085 -3.0413277 0 -2.9935075 -0.37543775 2444.9333 390s 8000 0.1 -3.029647 0 -2.9883767 -0.41884104 2444.9333 390s 9000 0.11588457 -3.0253422 0 -2.9775163 -0.43584065 2444.9333 390s 10000 0.1 -3.0293042 0 -2.9880339 -0.36809832 2444.9333 390s 11000 0.11830962 -3.029318 0 -2.9804913 -0.44710474 2444.9333 390s 12000 0.1 -3.0283785 0 -2.9871082 -0.20225766 2444.9333 390s 13000 0.11646107 -3.0351824 0 -2.9871185 -0.46506235 2444.9333 390s 14000 0.11264391 -3.0399048 0 -2.9934163 -0.23851225 2444.9333 390s 15000 0.11397557 -3.0400714 0 -2.9930333 -0.27494778 2444.9333 391s 16000 0.11527553 -3.0423634 0 -2.9947889 -0.27314794 2444.9333 391s 17000 0.11820003 -3.0419531 0 -2.9931715 -0.39533728 2444.9333 391s 18000 0.11165087 -3.0494285 0 -3.0033499 -0.25447692 2444.9333 391s 19000 0.11450729 -3.0488755 0 -3.0016179 -0.27183418 2444.9333 391s 20000 0.1090499 -3.0490281 0 -3.0040229 -0.39612969 2444.9333 391s Loop time of 2.46682 on 2 procs for 20000 steps with 1724 atoms 391s 391s Performance: 1751240.644 tau/day, 8107.596 timesteps/s, 13.977 Matom-step/s 391s 99.3% CPU use with 2 MPI tasks x 1 OpenMP threads 391s 391s MPI task timing breakdown: 391s Section | min time | avg time | max time |%varavg| %total 391s --------------------------------------------------------------- 391s Pair | 1.6125 | 1.7268 | 1.8411 | 8.7 | 70.00 391s Neigh | 0.099281 | 0.11035 | 0.12143 | 3.3 | 4.47 391s Comm | 0.20313 | 0.33126 | 0.4594 | 22.3 | 13.43 391s Output | 0.000422 | 0.000979 | 0.001536 | 0.0 | 0.04 391s Modify | 0.19365 | 0.2062 | 0.21874 | 2.8 | 8.36 391s Other | | 0.09123 | | | 3.70 391s 391s Nlocal: 862 ave 874 max 850 min 391s Histogram: 1 0 0 0 0 0 0 0 0 1 391s Nghost: 165.5 ave 166 max 165 min 391s Histogram: 1 0 0 0 0 0 0 0 0 1 391s Neighs: 7198 ave 7283 max 7113 min 391s Histogram: 1 0 0 0 0 0 0 0 0 1 391s 391s Total # of neighbors = 14396 391s Ave neighs/atom = 8.350348 391s Neighbor list builds = 720 391s Dangerous builds = 0 391s Total wall time: 0:00:02 391s LAMMPS (7 Feb 2024 - Update 1) 395s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 395s using 1 OpenMP thread(s) per MPI task 395s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 395s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 395s 1 by 1 by 1 MPI processor grid 395s Created 750 atoms 395s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 395s create_atoms CPU = 0.000 seconds 395s Created 750 atoms 395s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 395s create_atoms CPU = 0.000 seconds 395s Created 112 atoms 395s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 395s create_atoms CPU = 0.000 seconds 395s Created 112 atoms 395s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 395s create_atoms CPU = 0.000 seconds 395s 750 atoms in group lo 395s 862 atoms in group lo 395s 750 atoms in group hi 395s 862 atoms in group hi 395s 150 atoms in group lo-fixed 395s 150 atoms in group hi-fixed 395s 300 atoms in group boundary 395s 1424 atoms in group mobile 395s Setting atom values ... 395s 150 settings made for type 395s Setting atom values ... 395s 150 settings made for type 395s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 395s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 395s Neighbor list info ... 395s update: every = 1 steps, delay = 5 steps, check = yes 395s max neighbors/atom: 2000, page size: 100000 395s master list distance cutoff = 2.8 395s ghost atom cutoff = 2.8 395s binsize = 1.4, bins = 41 31 1 395s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 395s (1) pair lj/cut, perpetual 395s attributes: half, newton on 395s pair build: half/bin/atomonly/newton 395s stencil: half/bin/2d 395s bin: standard 395s Setting up Verlet run ... 395s Unit style : lj 395s Current step : 0 395s Time step : 0.0025 395s Per MPI rank memory allocation (min/avg/max) = 3.059 | 3.059 | 3.059 Mbytes 395s Step Temp E_pair E_mol TotEng Press Volume 395s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 395s 1000 0.1 -3.0915072 0 -3.0502369 0.0099866805 2444.9333 395s 2000 0.1 -3.0826007 0 -3.0413304 -0.41998885 2444.9333 395s 3000 0.08982505 -3.0757908 0 -3.0387197 -0.25244271 2444.9333 395s 4000 0.098727892 -3.0666371 0 -3.0258918 -0.25382683 2444.9333 395s 5000 0.11345478 -3.0506905 0 -3.0038674 -0.029177812 2444.9333 395s 6000 0.11386723 -3.0515296 0 -3.0045363 -0.32135016 2444.9333 395s 7000 0.11555642 -3.0379879 0 -2.9902974 -0.40431662 2444.9333 395s 8000 0.10658321 -3.036405 0 -2.9924178 -0.4572299 2444.9333 395s 9000 0.11648934 -3.0271687 0 -2.9790932 -0.45898613 2444.9333 395s 10000 0.10677611 -3.0303232 0 -2.9862564 -0.35269781 2444.9333 395s 11000 0.11746006 -3.0346344 0 -2.9861583 -0.46341365 2444.9333 395s 12000 0.112074 -3.036913 0 -2.9906597 -0.21768573 2444.9333 395s 13000 0.11249017 -3.0395382 0 -2.9931132 -0.44391864 2444.9333 395s 14000 0.11381248 -3.0362108 0 -2.9892401 -0.30885868 2444.9333 395s 15000 0.10964575 -3.0436265 0 -2.9983754 -0.26625672 2444.9333 395s 16000 0.10798733 -3.0460787 0 -3.001512 -0.27971711 2444.9333 395s 17000 0.11191725 -3.0455618 0 -2.9993732 -0.36993854 2444.9333 395s 18000 0.11418143 -3.0485595 0 -3.0014364 -0.24776847 2444.9333 395s 19000 0.11028213 -3.0473558 0 -3.001842 -0.30249398 2444.9333 395s 20000 0.11512925 -3.0504969 0 -3.0029827 -0.36022205 2444.9333 395s Loop time of 4.2272 on 1 procs for 20000 steps with 1724 atoms 395s 395s Performance: 1021953.287 tau/day, 4731.265 timesteps/s, 8.157 Matom-step/s 395s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 395s 395s MPI task timing breakdown: 395s Section | min time | avg time | max time |%varavg| %total 395s --------------------------------------------------------------- 395s Pair | 3.4539 | 3.4539 | 3.4539 | 0.0 | 81.71 395s Neigh | 0.20694 | 0.20694 | 0.20694 | 0.0 | 4.90 395s Comm | 0.029007 | 0.029007 | 0.029007 | 0.0 | 0.69 395s Output | 0.00074837 | 0.00074837 | 0.00074837 | 0.0 | 0.02 395s Modify | 0.42059 | 0.42059 | 0.42059 | 0.0 | 9.95 395s Other | | 0.116 | | | 2.74 395s 395s Nlocal: 1724 ave 1724 max 1724 min 395s Histogram: 1 0 0 0 0 0 0 0 0 0 395s Nghost: 145 ave 145 max 145 min 395s Histogram: 1 0 0 0 0 0 0 0 0 0 395s Neighs: 14397 ave 14397 max 14397 min 395s Histogram: 1 0 0 0 0 0 0 0 0 0 395s 395s Total # of neighbors = 14397 395s Ave neighs/atom = 8.3509281 395s Neighbor list builds = 723 395s Dangerous builds = 0 395s Total wall time: 0:00:04 395s run: OK 396s autopkgtest [01:24:07]: test friction: -----------------------] 396s friction PASS 396s autopkgtest [01:24:07]: test friction: - - - - - - - - - - results - - - - - - - - - - 397s autopkgtest [01:24:08]: test hugo: preparing testbed 397s Reading package lists... 397s Building dependency tree... 397s Reading state information... 397s Starting pkgProblemResolver with broken count: 0 398s Starting 2 pkgProblemResolver with broken count: 0 398s Done 398s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 399s autopkgtest [01:24:10]: test hugo: [----------------------- 399s LAMMPS (7 Feb 2024 - Update 1) 399s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 399s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 399s using 1 OpenMP thread(s) per MPI task 399s Lattice spacing in x,y,z = 1.4142135 2 2 399s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 399s 1 by 1 by 2 MPI processor grid 399s Created 1000 atoms 399s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 399s create_atoms CPU = 0.001 seconds 399s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 399s Neighbor list info ... 399s update: every = 1 steps, delay = 0 steps, check = yes 399s max neighbors/atom: 2000, page size: 100000 399s master list distance cutoff = 1.8475372 399s ghost atom cutoff = 1.8475372 399s binsize = 0.92376862, bins = 8 11 11 399s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 399s (1) pair lj/cubic, perpetual 399s attributes: half, newton on 399s pair build: half/bin/atomonly/newton 399s stencil: half/bin/3d 399s bin: standard 399s Setting up cg style minimization ... 399s Unit style : lj 399s Current step : 0 399s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 399s (src/min.cpp:219) 399s Per MPI rank memory allocation (min/avg/max) = 4.237 | 4.237 | 4.237 Mbytes 399s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 399s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 399s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 399s 134 0 -6.3344253 -6.3344253 -4.2957391e-13 -4.6556764e-13 -4.6545223e-13 6.9780267 9.8684199 9.8684199 399s Loop time of 0.0364173 on 2 procs for 134 steps with 1000 atoms 399s 399s 88.0% CPU use with 2 MPI tasks x 1 OpenMP threads 399s 399s Minimization stats: 399s Stopping criterion = force tolerance 399s Energy initial, next-to-last, final = 399s -6.29375358358574 -6.33442531515467 -6.33442531515467 399s Force two-norm initial, final = 3395.2895 5.526433e-10 399s Force max component initial, final = 1960.2713 3.2059964e-10 399s Final line search alpha, max atom move = 1 3.2059964e-10 399s Iterations, force evaluations = 134 137 399s 399s MPI task timing breakdown: 399s Section | min time | avg time | max time |%varavg| %total 399s --------------------------------------------------------------- 399s Pair | 0.020332 | 0.022156 | 0.02398 | 1.2 | 60.84 399s Neigh | 0.00040387 | 0.00042043 | 0.00043699 | 0.0 | 1.15 399s Comm | 0.0046951 | 0.0064651 | 0.008235 | 2.2 | 17.75 399s Output | 2.0641e-05 | 5.0943e-05 | 8.1245e-05 | 0.0 | 0.14 399s Modify | 0 | 0 | 0 | 0.0 | 0.00 399s Other | | 0.007325 | | | 20.11 399s 399s Nlocal: 500 ave 550 max 450 min 399s Histogram: 1 0 0 0 0 0 0 0 0 1 399s Nghost: 1214 ave 1264 max 1164 min 399s Histogram: 1 0 0 0 0 0 0 0 0 1 399s Neighs: 10500 ave 11550 max 9450 min 399s Histogram: 1 0 0 0 0 0 0 0 0 1 399s 399s Total # of neighbors = 21000 399s Ave neighs/atom = 21 399s Neighbor list builds = 1 399s Dangerous builds = 0 399s System init for write_restart ... 399s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 399s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 399s using 1 OpenMP thread(s) per MPI task 399s Reading restart file ... 399s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 399s restoring atom style atomic from restart 399s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 399s 1 by 1 by 2 MPI processor grid 399s restoring pair style lj/cubic from restart 399s 1000 atoms 399s read_restart CPU = 0.001 seconds 399s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 399s Neighbor list info ... 399s update: every = 1 steps, delay = 0 steps, check = yes 399s max neighbors/atom: 2000, page size: 100000 399s master list distance cutoff = 1.7475372 399s ghost atom cutoff = 1.7475372 399s binsize = 0.87376862, bins = 8 12 12 399s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 399s (1) pair lj/cubic, perpetual 399s attributes: half, newton on 399s pair build: half/bin/atomonly/newton 399s stencil: half/bin/3d 399s bin: standard 399s Setting up Verlet run ... 399s Unit style : lj 399s Current step : 0 399s Time step : 0.001 399s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 399s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 399s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 400s 1000 0.010266754 0.015384732 -2.1717334 -4183.9192 129.07798 58.489025 8.3141524 -4.1817628 0.9362044 23.511491 3.7372332 400s 2000 0.40259797 0.60329306 -5.627962 -1085.8312 12.843116 1.8560907 9.4470663 -1.0808065 -0.37219276 14.040385 0.6226867 400s 3000 0.47352764 0.70958118 -3.847268 -3270.82 65.659321 23.910002 8.6682025 -3.2676824 -0.14827512 19.052005 2.3460318 401s 4000 0.51027892 0.76465296 -4.3666607 -2668.4808 36.299422 5.4253511 8.7365217 -2.6648788 -0.43242827 14.580921 1.6947004 401s 5000 0.27107084 0.40619965 -4.8148544 -1808.6901 35.499158 7.8616668 8.7438741 -1.8042815 -0.17683868 14.465657 1.6705446 401s 6000 0.14589565 0.21862463 -4.1603429 -2363.5903 43.618418 5.9789884 8.3935297 -2.3596486 -0.050591412 14.026367 2.1169125 402s 7000 0.085822195 0.12860456 -4.2874019 -2281.4454 40.483746 3.874914 8.3489633 -2.2772866 -0.011160894 13.315551 2.0696635 402s 8000 0.039594243 0.059331974 -4.3555951 -2176.8532 39.840893 3.7201608 8.3381853 -2.1725569 0.028292259 13.163321 2.0603537 402s 9000 0.025376486 0.038026664 -4.2983996 -2330.0794 39.628092 2.631482 8.2935294 -2.3258191 0.032864503 12.942681 2.084285 402s 10000 0.020305022 0.030427075 -4.2090968 -1864.3718 42.005843 3.1326248 8.2404246 -1.8601931 0.074717463 13.108473 2.1814026 402s Loop time of 3.00322 on 2 procs for 10000 steps with 1000 atoms 402s 402s Performance: 287690.912 tau/day, 3329.756 timesteps/s, 3.330 Matom-step/s 402s 94.9% CPU use with 2 MPI tasks x 1 OpenMP threads 402s 402s MPI task timing breakdown: 402s Section | min time | avg time | max time |%varavg| %total 402s --------------------------------------------------------------- 402s Pair | 2.0359 | 2.0456 | 2.0553 | 0.7 | 68.11 402s Neigh | 0.090017 | 0.090696 | 0.091375 | 0.2 | 3.02 402s Comm | 0.38457 | 0.39465 | 0.40473 | 1.6 | 13.14 402s Output | 0.00058976 | 0.00090256 | 0.0012154 | 0.0 | 0.03 402s Modify | 0.41931 | 0.42046 | 0.42161 | 0.2 | 14.00 402s Other | | 0.05092 | | | 1.70 403s 403s Nlocal: 500 ave 509 max 491 min 403s Histogram: 1 0 0 0 0 0 0 0 0 1 403s Nghost: 1346.5 ave 1369 max 1324 min 403s Histogram: 1 0 0 0 0 0 0 0 0 1 403s Neighs: 10311.5 ave 10391 max 10232 min 403s Histogram: 1 0 0 0 0 0 0 0 0 1 403s 403s Total # of neighbors = 20623 403s Ave neighs/atom = 20.623 403s Neighbor list builds = 205 403s Dangerous builds = 0 403s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 403s using 1 OpenMP thread(s) per MPI task 403s Reading restart file ... 403s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 403s restoring atom style atomic from restart 403s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 403s 1 by 1 by 2 MPI processor grid 403s restoring pair style lj/cubic from restart 403s 1000 atoms 403s read_restart CPU = 0.001 seconds 403s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 403s Neighbor list info ... 403s update: every = 1 steps, delay = 0 steps, check = yes 403s max neighbors/atom: 2000, page size: 100000 403s master list distance cutoff = 1.7475372 403s ghost atom cutoff = 1.7475372 403s binsize = 0.87376862, bins = 8 12 12 403s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 403s (1) pair lj/cubic, perpetual 403s attributes: half, newton on 403s pair build: half/bin/atomonly/newton 403s stencil: half/bin/3d 403s bin: standard 403s Setting up Verlet run ... 403s Unit style : lj 403s Current step : 0 403s Time step : 0.001 403s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 403s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 403s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 403s 1000 0.0062790167 0.0094091065 -5.989181 -1670.9917 18.916499 7.5833446 9.2337867 -1.6650119 0.023434204 13.976079 0.92136905 403s 2000 0.0066373266 0.0099460339 -5.4562974 -2537.9609 37.066673 15.536927 8.9495838 -2.5325146 0.10236546 16.325445 1.5455989 403s 3000 0.006890427 0.010325305 -5.3657707 -2643.943 39.911802 16.807453 8.9154493 -2.6385876 0.11827588 16.639682 1.6328058 404s 4000 0.0073314031 0.010986107 -5.3630545 -2655.872 40.003435 16.849611 8.9144058 -2.6505199 0.11864983 16.649819 1.6355581 404s 5000 0.0075004567 0.011239434 -5.3630119 -2664.6029 39.9983 16.845885 8.9144863 -2.6592512 0.11845678 16.649441 1.6353853 404s 6000 0.0078159402 0.011712186 -5.3629866 -2673.5606 39.999501 16.84634 8.9144972 -2.6682093 0.11829898 16.649784 1.6354006 404s 7000 0.0078365866 0.011743125 -5.3625076 -2682.4138 40.001112 16.844623 8.9145083 -2.6770631 0.11814173 16.650214 1.6354243 405s 8000 0.0075482436 0.011311043 -5.3616205 -2690.9824 39.996485 16.835974 8.9145436 -2.6856321 0.11792207 16.649554 1.6352999 405s 9000 0.0083133885 0.012457613 -5.362258 -2700.1342 39.99904 16.841287 8.9145642 -2.6947844 0.11777124 16.650263 1.6353348 405s 10000 0.0086355586 0.012940385 -5.3622381 -2709.0315 39.997759 16.839976 8.9145913 -2.7036822 0.11757678 16.650228 1.6352858 405s Loop time of 2.66481 on 2 procs for 10000 steps with 1000 atoms 405s 405s Performance: 324226.290 tau/day, 3752.619 timesteps/s, 3.753 Matom-step/s 405s 95.0% CPU use with 2 MPI tasks x 1 OpenMP threads 405s 405s MPI task timing breakdown: 405s Section | min time | avg time | max time |%varavg| %total 405s --------------------------------------------------------------- 405s Pair | 1.7739 | 1.8264 | 1.8789 | 3.9 | 68.54 405s Neigh | 0.0043078 | 0.0043908 | 0.0044737 | 0.1 | 0.16 405s Comm | 0.31704 | 0.36925 | 0.42147 | 8.6 | 13.86 405s Output | 0.00060336 | 0.0014512 | 0.002299 | 2.2 | 0.05 405s Modify | 0.41246 | 0.41548 | 0.4185 | 0.5 | 15.59 405s Other | | 0.04783 | | | 1.79 405s 405s Nlocal: 500 ave 508 max 492 min 405s Histogram: 1 0 0 0 0 0 0 0 0 1 405s Nghost: 1214 ave 1222 max 1206 min 405s Histogram: 1 0 0 0 0 0 0 0 0 1 405s Neighs: 10500 ave 10668 max 10332 min 405s Histogram: 1 0 0 0 0 0 0 0 0 1 405s 405s Total # of neighbors = 21000 405s Ave neighs/atom = 21 405s Neighbor list builds = 10 405s Dangerous builds = 0 405s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 405s using 1 OpenMP thread(s) per MPI task 405s Reading restart file ... 405s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 405s restoring atom style atomic from restart 405s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 405s 1 by 1 by 2 MPI processor grid 405s restoring pair style lj/cubic from restart 405s 1000 atoms 405s read_restart CPU = 0.001 seconds 405s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 405s Neighbor list info ... 405s update: every = 1 steps, delay = 0 steps, check = yes 405s max neighbors/atom: 2000, page size: 100000 405s master list distance cutoff = 1.7475372 405s ghost atom cutoff = 1.7475372 405s binsize = 0.87376862, bins = 8 12 12 405s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 405s (1) pair lj/cubic, perpetual 405s attributes: half, newton on 405s pair build: half/bin/atomonly/newton 405s stencil: half/bin/3d 405s bin: standard 405s Setting up Verlet run ... 405s Unit style : lj 405s Current step : 0 405s Time step : 0.001 405s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 405s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 405s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 405s 1000 0.0079519127 0.011915941 -5.50188 -838.80672 35.61641 14.888864 8.9677618 -0.83331675 0.093886135 16.160598 1.5002751 406s 2000 0.019411054 0.029087464 -5.2936665 -1019.5497 41.77353 17.564044 8.8958463 -1.0142851 0.11811209 16.853902 1.687248 406s 3000 0.047492482 0.071167484 -5.3441861 -971.66654 39.02349 16.097707 8.9321705 -0.96639352 0.073376741 16.597136 1.600557 406s 4000 0.12096417 0.18126481 -5.2102393 -1315.5664 40.846153 16.436163 8.9200987 -1.3105374 0.017574117 16.873813 1.6478442 406s 5000 0.1272463 0.19067858 -5.2517864 -1192.2753 39.105833 15.560562 8.9406854 -1.1872142 -0.00025457398 16.689339 1.5950732 407s 6000 0.14515651 0.21751704 -5.1820215 -1372.0064 40.682715 16.119979 8.9220924 -1.3670419 -0.0066818447 16.857436 1.6428451 407s 7000 0.12286771 0.18411727 -5.2596973 -1200.0518 39.255412 15.703071 8.938111 -1.1949762 0.0073588891 16.698492 1.6002966 407s 8000 0.1428801 0.21410583 -5.1748689 -1340.8702 40.704199 16.116121 8.9238602 -1.3359094 -0.0085191302 16.877378 1.6417704 408s 9000 0.12012635 0.18000933 -5.2541332 -1187.2981 39.322347 15.708304 8.9368444 -1.182224 0.0081737382 16.701561 1.6027307 408s 10000 0.1485814 0.22264922 -5.184468 -1359.9408 40.542555 16.055637 8.9246711 -1.3549789 -0.010330357 16.85094 1.6378163 408s Loop time of 2.724 on 2 procs for 10000 steps with 1000 atoms 408s 408s Performance: 317180.209 tau/day, 3671.067 timesteps/s, 3.671 Matom-step/s 408s 94.7% CPU use with 2 MPI tasks x 1 OpenMP threads 408s 408s MPI task timing breakdown: 408s Section | min time | avg time | max time |%varavg| %total 408s --------------------------------------------------------------- 408s Pair | 1.8252 | 1.8507 | 1.8763 | 1.9 | 67.94 408s Neigh | 0.042407 | 0.043195 | 0.043983 | 0.4 | 1.59 408s Comm | 0.33363 | 0.36009 | 0.38654 | 4.4 | 13.22 408s Output | 0.00055611 | 0.0017051 | 0.002854 | 2.8 | 0.06 408s Modify | 0.41713 | 0.41962 | 0.42211 | 0.4 | 15.40 408s Other | | 0.04865 | | | 1.79 408s 408s Nlocal: 500 ave 510 max 490 min 408s Histogram: 1 0 0 0 0 0 0 0 0 1 408s Nghost: 1216.5 ave 1227 max 1206 min 408s Histogram: 1 0 0 0 0 0 0 0 0 1 408s Neighs: 10311 ave 10520 max 10102 min 408s Histogram: 1 0 0 0 0 0 0 0 0 1 408s 408s Total # of neighbors = 20622 408s Ave neighs/atom = 20.622 408s Neighbor list builds = 95 408s Dangerous builds = 0 408s Total wall time: 0:00:08 408s LAMMPS (7 Feb 2024 - Update 1) 408s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 408s using 1 OpenMP thread(s) per MPI task 408s Lattice spacing in x,y,z = 1.4142135 2 2 408s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 408s 1 by 1 by 1 MPI processor grid 408s Created 1000 atoms 408s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 408s create_atoms CPU = 0.000 seconds 408s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 408s Neighbor list info ... 408s update: every = 1 steps, delay = 0 steps, check = yes 408s max neighbors/atom: 2000, page size: 100000 408s master list distance cutoff = 1.8475372 408s ghost atom cutoff = 1.8475372 408s binsize = 0.92376862, bins = 8 11 11 408s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 408s (1) pair lj/cubic, perpetual 408s attributes: half, newton on 408s pair build: half/bin/atomonly/newton 408s stencil: half/bin/3d 408s bin: standard 408s Setting up cg style minimization ... 408s Unit style : lj 408s Current step : 0 408s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 408s (src/min.cpp:219) 408s Per MPI rank memory allocation (min/avg/max) = 4.247 | 4.247 | 4.247 Mbytes 408s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 408s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 408s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 408s 134 0 -6.3344253 -6.3344253 -4.3566216e-13 -4.7438184e-13 -4.6860149e-13 6.9780267 9.8684199 9.8684199 408s Loop time of 0.0556694 on 1 procs for 134 steps with 1000 atoms 408s 408s 99.5% CPU use with 1 MPI tasks x 1 OpenMP threads 408s 408s Minimization stats: 408s Stopping criterion = force tolerance 408s Energy initial, next-to-last, final = 408s -6.29375358358556 -6.33442531515503 -6.33442531515503 408s Force two-norm initial, final = 3395.2895 5.6047601e-10 408s Force max component initial, final = 1960.2713 3.2666928e-10 408s Final line search alpha, max atom move = 1 3.2666928e-10 408s Iterations, force evaluations = 134 137 408s 408s MPI task timing breakdown: 408s Section | min time | avg time | max time |%varavg| %total 408s --------------------------------------------------------------- 408s Pair | 0.044646 | 0.044646 | 0.044646 | 0.0 | 80.20 408s Neigh | 0.0008253 | 0.0008253 | 0.0008253 | 0.0 | 1.48 408s Comm | 0.0012221 | 0.0012221 | 0.0012221 | 0.0 | 2.20 408s Output | 2.2272e-05 | 2.2272e-05 | 2.2272e-05 | 0.0 | 0.04 408s Modify | 0 | 0 | 0 | 0.0 | 0.00 408s Other | | 0.008954 | | | 16.08 408s 408s Nlocal: 1000 ave 1000 max 1000 min 408s Histogram: 1 0 0 0 0 0 0 0 0 0 408s Nghost: 1724 ave 1724 max 1724 min 408s Histogram: 1 0 0 0 0 0 0 0 0 0 408s Neighs: 21000 ave 21000 max 21000 min 408s Histogram: 1 0 0 0 0 0 0 0 0 0 408s 408s Total # of neighbors = 21000 408s Ave neighs/atom = 21 408s Neighbor list builds = 1 408s Dangerous builds = 0 408s System init for write_restart ... 408s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 408s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 408s using 1 OpenMP thread(s) per MPI task 408s Reading restart file ... 408s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 408s restoring atom style atomic from restart 408s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 408s 1 by 1 by 1 MPI processor grid 408s restoring pair style lj/cubic from restart 408s 1000 atoms 408s read_restart CPU = 0.001 seconds 408s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 408s Neighbor list info ... 408s update: every = 1 steps, delay = 0 steps, check = yes 408s max neighbors/atom: 2000, page size: 100000 408s master list distance cutoff = 1.7475372 408s ghost atom cutoff = 1.7475372 408s binsize = 0.87376862, bins = 8 12 12 408s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 413s (1) pair lj/cubic, perpetual 413s attributes: half, newton on 413s pair build: half/bin/atomonly/newton 413s stencil: half/bin/3d 413s bin: standard 413s Setting up Verlet run ... 413s Unit style : lj 413s Current step : 0 413s Time step : 0.001 413s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 413s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 413s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 413s 1000 0.0093381492 0.013993217 -2.1704431 -4183.8284 129.15284 58.544409 8.3142517 -4.1816719 0.93744212 23.519052 3.7381985 413s 2000 0.24794859 0.37155095 -5.8915826 -528.38691 8.3849811 1.3744297 9.5938806 -0.52286688 -0.24350394 13.910493 0.41033425 413s 3000 0.3892042 0.5832225 -3.7686896 -3442.3257 72.742382 28.486576 8.6238082 -3.4391402 0.0038227739 19.697354 2.5139569 413s 4000 0.67010303 1.0041494 -4.2080956 -2935.8105 35.596234 3.9346859 8.7508489 -2.9326065 -0.58038927 14.529876 1.6677093 413s 5000 0.41845028 0.62704774 -4.8392822 -1894.6664 30.624319 4.6370699 8.7827304 -1.8904542 -0.31998377 13.670423 1.5249748 413s 6000 0.22409652 0.33580864 -3.7653422 -2666.4156 50.804071 7.220865 8.25496 -2.6629861 -0.017448126 14.48017 2.3883779 413s 7000 0.094832865 0.14210705 -4.5432169 -2337.0271 35.853414 3.4750842 8.4475655 -2.332626 -0.052659777 12.95347 1.8841809 413s 8000 0.043338745 0.06494311 -4.6249402 -1687.4892 39.679004 6.7256868 8.4321684 -1.6829292 0.070571417 13.554654 1.9927395 413s 9000 0.018233343 0.027322664 -4.425909 -1916.4941 41.680023 5.9079935 8.3470382 -1.9120955 0.090887676 13.502397 2.1013348 413s 10000 0.0082616415 0.01238007 -4.6221264 -1723.6542 39.842157 6.5678795 8.41093 -1.7190444 0.099616538 13.484322 2.0113699 413s Loop time of 5.0516 on 1 procs for 10000 steps with 1000 atoms 413s 413s Performance: 171034.851 tau/day, 1979.570 timesteps/s, 1.980 Matom-step/s 413s 99.4% CPU use with 1 MPI tasks x 1 OpenMP threads 413s 413s MPI task timing breakdown: 413s Section | min time | avg time | max time |%varavg| %total 413s --------------------------------------------------------------- 413s Pair | 4.1335 | 4.1335 | 4.1335 | 0.0 | 81.83 413s Neigh | 0.16471 | 0.16471 | 0.16471 | 0.0 | 3.26 413s Comm | 0.098241 | 0.098241 | 0.098241 | 0.0 | 1.94 413s Output | 0.00057825 | 0.00057825 | 0.00057825 | 0.0 | 0.01 413s Modify | 0.60974 | 0.60974 | 0.60974 | 0.0 | 12.07 413s Other | | 0.04479 | | | 0.89 413s 413s Nlocal: 1000 ave 1000 max 1000 min 413s Histogram: 1 0 0 0 0 0 0 0 0 0 413s Nghost: 1886 ave 1886 max 1886 min 413s Histogram: 1 0 0 0 0 0 0 0 0 0 413s Neighs: 20874 ave 20874 max 20874 min 413s Histogram: 1 0 0 0 0 0 0 0 0 0 413s 413s Total # of neighbors = 20874 413s Ave neighs/atom = 20.874 413s Neighbor list builds = 188 413s Dangerous builds = 0 413s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 413s using 1 OpenMP thread(s) per MPI task 413s Reading restart file ... 413s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 413s restoring atom style atomic from restart 413s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 413s 1 by 1 by 1 MPI processor grid 413s restoring pair style lj/cubic from restart 413s 1000 atoms 413s read_restart CPU = 0.001 seconds 413s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 413s Neighbor list info ... 418s update: every = 1 steps, delay = 0 steps, check = yes 418s max neighbors/atom: 2000, page size: 100000 418s master list distance cutoff = 1.7475372 418s ghost atom cutoff = 1.7475372 418s binsize = 0.87376862, bins = 8 12 12 418s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 418s (1) pair lj/cubic, perpetual 418s attributes: half, newton on 418s pair build: half/bin/atomonly/newton 418s stencil: half/bin/3d 418s bin: standard 418s Setting up Verlet run ... 418s Unit style : lj 418s Current step : 0 418s Time step : 0.001 418s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 418s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 418s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 418s 1000 0.0062572988 0.0093765623 -5.989087 -1670.9191 18.918118 7.5844401 9.2338165 -1.6649394 0.023419337 13.976997 0.92138738 418s 2000 0.0068451081 0.010257394 -5.456581 -2537.81 37.064253 15.537266 8.9496405 -2.5323637 0.10230605 16.325406 1.5455016 418s 3000 0.0073276099 0.010980423 -5.3663421 -2643.8751 39.907292 16.807489 8.9154852 -2.6385198 0.11818116 16.63905 1.6326832 418s 4000 0.0069296906 0.010384141 -5.36234 -2655.7228 40.010742 16.851482 8.9144328 -2.6503709 0.11868137 16.651571 1.6356847 418s 5000 0.0076142461 0.011409948 -5.3631443 -2664.4499 39.997648 16.846756 8.9145416 -2.6590982 0.1184114 16.649779 1.6353254 418s 6000 0.0077053831 0.011546517 -5.3628538 -2673.2444 39.991598 16.840314 8.9145803 -2.667893 0.11818361 16.648852 1.6351691 418s 7000 0.0077405663 0.011599239 -5.3623531 -2682.1589 40.000448 16.844009 8.9145774 -2.6768081 0.11809899 16.650669 1.6353525 418s 8000 0.0080673569 0.012088934 -5.3623755 -2691.0104 39.995327 16.840134 8.9146099 -2.6856601 0.11787103 16.649882 1.6352204 418s 9000 0.0083223083 0.012470979 -5.3622988 -2699.8929 40.00571 16.847764 8.9146503 -2.6945431 0.11781523 16.652389 1.6353987 418s 10000 0.0091249116 0.01367368 -5.3630138 -2708.966 39.987197 16.837314 8.9146848 -2.7036167 0.11743014 16.648832 1.6349911 418s Loop time of 4.46882 on 1 procs for 10000 steps with 1000 atoms 418s 418s Performance: 193339.709 tau/day, 2237.728 timesteps/s, 2.238 Matom-step/s 418s 99.1% CPU use with 1 MPI tasks x 1 OpenMP threads 418s 418s MPI task timing breakdown: 418s Section | min time | avg time | max time |%varavg| %total 418s --------------------------------------------------------------- 418s Pair | 3.7143 | 3.7143 | 3.7143 | 0.0 | 83.12 418s Neigh | 0.0098089 | 0.0098089 | 0.0098089 | 0.0 | 0.22 418s Comm | 0.088375 | 0.088375 | 0.088375 | 0.0 | 1.98 418s Output | 0.00067393 | 0.00067393 | 0.00067393 | 0.0 | 0.02 418s Modify | 0.61184 | 0.61184 | 0.61184 | 0.0 | 13.69 418s Other | | 0.04386 | | | 0.98 418s 418s Nlocal: 1000 ave 1000 max 1000 min 418s Histogram: 1 0 0 0 0 0 0 0 0 0 418s Nghost: 1724 ave 1724 max 1724 min 418s Histogram: 1 0 0 0 0 0 0 0 0 0 418s Neighs: 21000 ave 21000 max 21000 min 418s Histogram: 1 0 0 0 0 0 0 0 0 0 418s 418s Total # of neighbors = 21000 418s Ave neighs/atom = 21 418s Neighbor list builds = 11 418s Dangerous builds = 0 418s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 418s using 1 OpenMP thread(s) per MPI task 418s Reading restart file ... 418s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 418s restoring atom style atomic from restart 422s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 422s 1 by 1 by 1 MPI processor grid 422s restoring pair style lj/cubic from restart 422s 1000 atoms 422s read_restart CPU = 0.001 seconds 422s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 422s Neighbor list info ... 422s update: every = 1 steps, delay = 0 steps, check = yes 422s max neighbors/atom: 2000, page size: 100000 422s master list distance cutoff = 1.7475372 422s ghost atom cutoff = 1.7475372 422s binsize = 0.87376862, bins = 8 12 12 422s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 422s (1) pair lj/cubic, perpetual 422s attributes: half, newton on 422s pair build: half/bin/atomonly/newton 422s stencil: half/bin/3d 422s bin: standard 422s Setting up Verlet run ... 422s Unit style : lj 422s Current step : 0 422s Time step : 0.001 422s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 422s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 422s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 422s 1000 0.0083300318 0.012482553 -5.5023183 -838.99233 35.610078 14.886668 8.9677982 -0.83350249 0.093761717 16.159482 1.500112 422s 2000 0.020386436 0.030549075 -5.294934 -1021.4347 41.760404 17.563313 8.8960328 -1.0161703 0.1178086 16.852842 1.6868239 422s 3000 0.049693082 0.074465084 -5.3469418 -982.1922 39.030412 16.123502 8.9325589 -0.97691972 0.073097533 16.601991 1.6003728 422s 4000 0.11859524 0.17771497 -5.207074 -1299.948 40.941639 16.507821 8.9213137 -1.2949186 0.018189971 16.904165 1.6487306 422s 5000 0.130146 0.19502378 -5.261025 -1208.3405 39.059595 15.609328 8.9431689 -1.2032745 -0.00023811036 16.701434 1.5920334 422s 6000 0.13812959 0.20698719 -5.1710048 -1334.1421 40.904888 16.242199 8.9222846 -1.329178 -0.0044756362 16.90509 1.6471606 422s 7000 0.12107441 0.18143001 -5.2602562 -1170.0585 39.060849 15.577606 8.9397535 -1.1649797 0.005587398 16.671517 1.5949415 422s 8000 0.14333426 0.21478639 -5.1717109 -1352.635 40.876285 16.205871 8.9218128 -1.3476781 -0.0069373292 16.895041 1.6469877 422s 9000 0.12159783 0.18221435 -5.2591928 -1186.8604 39.22852 15.6778 8.9376658 -1.1817834 0.0077335044 16.68885 1.6001243 422s 10000 0.15321647 0.22959488 -5.188176 -1391.2245 40.666599 16.146259 8.9228489 -1.3862659 -0.0091900905 16.860718 1.6418747 422s Loop time of 4.52679 on 1 procs for 10000 steps with 1000 atoms 422s 422s Performance: 190863.915 tau/day, 2209.073 timesteps/s, 2.209 Matom-step/s 422s 99.5% CPU use with 1 MPI tasks x 1 OpenMP threads 422s 422s MPI task timing breakdown: 422s Section | min time | avg time | max time |%varavg| %total 422s --------------------------------------------------------------- 422s Pair | 3.7073 | 3.7073 | 3.7073 | 0.0 | 81.90 422s Neigh | 0.083431 | 0.083431 | 0.083431 | 0.0 | 1.84 422s Comm | 0.087958 | 0.087958 | 0.087958 | 0.0 | 1.94 422s Output | 0.00047292 | 0.00047292 | 0.00047292 | 0.0 | 0.01 422s Modify | 0.60463 | 0.60463 | 0.60463 | 0.0 | 13.36 422s Other | | 0.04301 | | | 0.95 422s 422s Nlocal: 1000 ave 1000 max 1000 min 422s Histogram: 1 0 0 0 0 0 0 0 0 0 422s Nghost: 1724 ave 1724 max 1724 min 422s Histogram: 1 0 0 0 0 0 0 0 0 0 422s Neighs: 20654 ave 20654 max 20654 min 422s Histogram: 1 0 0 0 0 0 0 0 0 0 422s 422s Total # of neighbors = 20654 422s Ave neighs/atom = 20.654 422s Neighbor list builds = 94 422s Dangerous builds = 0 422s Total wall time: 0:00:14 422s run: OK 422s autopkgtest [01:24:33]: test hugo: -----------------------] 423s autopkgtest [01:24:34]: test hugo: - - - - - - - - - - results - - - - - - - - - - 423s hugo PASS 423s autopkgtest [01:24:34]: test command1: preparing testbed 572s autopkgtest [01:27:03]: testbed dpkg architecture: arm64 572s autopkgtest [01:27:03]: testbed apt version: 2.9.33 573s autopkgtest [01:27:04]: @@@@@@@@@@@@@@@@@@@@ test bed setup 573s autopkgtest [01:27:04]: testbed release detected to be: plucky 574s autopkgtest [01:27:05]: updating testbed package index (apt update) 574s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 574s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 574s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 574s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 575s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [365 kB] 575s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [41.4 kB] 575s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.7 kB] 575s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [72.2 kB] 575s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1816 B] 575s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 575s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [316 kB] 575s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [13.9 kB] 575s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [16.8 kB] 575s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B] 575s Fetched 972 kB in 1s (1047 kB/s) 576s Reading package lists... 577s Reading package lists... 577s Building dependency tree... 577s Reading state information... 578s Calculating upgrade... 578s Calculating upgrade... 578s The following packages will be upgraded: 578s pinentry-curses python3-jinja2 strace 578s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 578s Need to get 647 kB of archives. 578s After this operation, 11.3 kB of additional disk space will be used. 578s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 579s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB] 579s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 579s Fetched 647 kB in 1s (957 kB/s) 580s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 580s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 580s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 580s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ... 580s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 580s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 580s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 580s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 580s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 581s Setting up strace (6.13+ds-1ubuntu1) ... 581s Processing triggers for man-db (2.13.0-1) ... 582s Reading package lists... 583s Building dependency tree... 583s Reading state information... 583s Solving dependencies... 584s The following packages will be REMOVED: 584s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 584s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 584s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 584s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 584s 0 upgraded, 0 newly installed, 11 to remove and 1 not upgraded. 584s After this operation, 267 MB disk space will be freed. 585s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 585s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 585s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 585s Removing libpython3.12t64:arm64 (3.12.9-1) ... 585s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 585s Removing libnsl2:arm64 (1.3.0-3build3) ... 585s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 585s Removing libunwind8:arm64 (1.6.2-3.1) ... 585s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 585s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 588s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 588s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 588s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 588s /etc/kernel/postrm.d/initramfs-tools: 588s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 588s /etc/kernel/postrm.d/zz-flash-kernel: 588s flash-kernel: Kernel 6.11.0-8-generic has been removed. 588s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 588s /etc/kernel/postrm.d/zz-update-grub: 588s Sourcing file `/etc/default/grub' 588s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 588s Generating grub configuration file ... 589s Found linux image: /boot/vmlinuz-6.14.0-10-generic 589s Found initrd image: /boot/initrd.img-6.14.0-10-generic 589s Warning: os-prober will not be executed to detect other bootable partitions. 589s Systems on them will not be added to the GRUB boot configuration. 589s Check GRUB_DISABLE_OS_PROBER documentation entry. 589s Adding boot menu entry for UEFI Firmware Settings ... 589s done 589s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 590s Processing triggers for libc-bin (2.41-1ubuntu1) ... 590s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 590s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 590s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 590s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 590s autopkgtest [01:27:21]: upgrading testbed (apt dist-upgrade and autopurge) 591s Reading package lists... 591s Building dependency tree... 591s Reading state information... 592s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 592s Starting 2 pkgProblemResolver with broken count: 0 592s Done 594s Entering ResolveByKeep 594s 595s Calculating upgrade... 595s The following packages will be upgraded: 595s libpng16-16t64 596s 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 596s Need to get 186 kB of archives. 596s After this operation, 0 B of additional disk space will be used. 596s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpng16-16t64 arm64 1.6.47-1.1 [186 kB] 597s Fetched 186 kB in 0s (409 kB/s) 597s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 597s Preparing to unpack .../libpng16-16t64_1.6.47-1.1_arm64.deb ... 597s Unpacking libpng16-16t64:arm64 (1.6.47-1.1) over (1.6.47-1) ... 597s Setting up libpng16-16t64:arm64 (1.6.47-1.1) ... 597s Processing triggers for libc-bin (2.41-1ubuntu1) ... 597s Reading package lists... 598s Building dependency tree... 598s Reading state information... 598s Starting pkgProblemResolver with broken count: 0 599s Starting 2 pkgProblemResolver with broken count: 0 599s Done 599s Solving dependencies... 600s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 600s autopkgtest [01:27:31]: rebooting testbed after setup commands that affected boot 628s Reading package lists... 628s Building dependency tree... 628s Reading state information... 629s Starting pkgProblemResolver with broken count: 0 629s Starting 2 pkgProblemResolver with broken count: 0 629s Done 631s The following NEW packages will be installed: 631s autoconf automake autotools-dev cpp-14 cpp-14-aarch64-linux-gnu 631s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-14 631s gcc-14-aarch64-linux-gnu gfortran-14 gfortran-14-aarch64-linux-gnu libaec0 631s libamd-comgr2 libamdhip64-5 libasan8 libblas3 libcairo2 libcc1-0 libdeflate0 631s libdouble-conversion3 libevent-2.1-7t64 libevent-dev libevent-extra-2.1-7t64 631s libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 631s libfftw3-double3 libfontconfig1 libgbm1 libgcc-14-dev libgfortran-14-dev 631s libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglew2.2 libglvnd0 631s libglx-mesa0 libglx0 libgomp1 libhdf5-310 libhdf5-hl-310 libhsa-runtime64-1 631s libhsakmt1 libhwasan0 libhwloc-dev libhwloc-plugins libhwloc15 libibmad5 631s libibumad3 libibverbs-dev libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 631s libjs-jquery libjs-jquery-ui libjsoncpp26 libkim-api2 liblammps-dev 631s liblammps0t64 liblapack3 liblerc4 libllvm17t64 liblsan0 libltdl-dev libltdl7 631s libmpc3 libmunge2 libnetcdf22 libnl-3-dev libnl-route-3-dev libnuma-dev 631s libogg0 libopengl0 libopenmpi-dev libopenmpi40 libpciaccess0 libpixman-1-0 631s libpmix-dev libpmix2t64 libpnetcdf6 libproj25 librdmacm1t64 libsharpyuv0 631s libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheoradec1 631s libtheoraenc1 libtiff6 libtk8.6 libtsan2 libubsan1 libucx0 libvoro++1 631s libvtk9.3 libvulkan1 libwayland-server0 libwebp7 libx11-xcb1 libxcb-dri3-0 631s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 631s libxcb-sync1 libxcb-xfixes0 libxft2 libxnvctrl0 libxrender1 libxshmfence1 631s libxss1 libxxf86vm1 m4 mesa-libgallium mpi-default-bin mpi-default-dev 631s ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data python3-lammps 631s x11-common zlib1g-dev 631s 0 upgraded, 130 newly installed, 0 to remove and 0 not upgraded. 631s Need to get 185 MB of archives. 631s After this operation, 743 MB of additional disk space will be used. 631s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 m4 arm64 1.4.19-7 [244 kB] 631s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 autoconf all 2.72-3ubuntu1 [383 kB] 631s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 autotools-dev all 20220109.1 [44.9 kB] 631s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 automake all 1:1.17-3ubuntu1 [572 kB] 631s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 631s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 631s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 632s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 632s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 632s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 632s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 632s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 632s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 632s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 632s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 632s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 633s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 633s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 633s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 633s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 633s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 636s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 636s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 636s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 636s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 636s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 636s Get:27 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 636s Get:28 http://ftpmaster.internal/ubuntu plucky/universe arm64 libllvm17t64 arm64 1:17.0.6-21 [24.9 MB] 638s Get:29 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3build2 [14.1 MB] 639s Get:30 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhsakmt1 arm64 5.7.0-1build1 [63.6 kB] 639s Get:31 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhsa-runtime64-1 arm64 5.7.1-2build1 [286 kB] 639s Get:32 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamdhip64-5 arm64 5.7.1-5 [9704 kB] 640s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 640s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 640s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 640s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 640s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 640s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 640s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 640s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 640s Get:41 http://ftpmaster.internal/ubuntu plucky/universe arm64 libdouble-conversion3 arm64 3.3.1-1 [38.8 kB] 640s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10 [140 kB] 640s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-extra-2.1-7t64 arm64 2.1.12-stable-10 [62.0 kB] 640s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10 [7922 B] 640s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-openssl-2.1-7t64 arm64 2.1.12-stable-10 [14.7 kB] 640s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-dev arm64 2.1.12-stable-10 [283 kB] 640s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 librdmacm1t64 arm64 55.0-1ubuntu1 [71.5 kB] 640s Get:48 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfabric1 arm64 1.17.0-3.1 [542 kB] 640s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libfftw3-double3 arm64 3.3.10-2fakesync1build1 [392 kB] 640s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libwayland-server0 arm64 1.23.1-3 [36.1 kB] 640s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libx11-xcb1 arm64 2:1.8.10-2 [8020 B] 640s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-dri3-0 arm64 1.17.0-2 [7606 B] 640s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-present0 arm64 1.17.0-2 [6224 B] 640s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-randr0 arm64 1.17.0-2 [18.5 kB] 640s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-sync1 arm64 1.17.0-2 [9688 B] 640s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-xfixes0 arm64 1.17.0-2 [10.6 kB] 640s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libxshmfence1 arm64 1.3-1build5 [4938 B] 640s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 mesa-libgallium arm64 25.0.1-2ubuntu1 [9450 kB] 641s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libgbm1 arm64 25.0.1-2ubuntu1 [33.7 kB] 641s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libvulkan1 arm64 1.4.304.0-1 [158 kB] 641s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libgl1-mesa-dri arm64 25.0.1-2ubuntu1 [34.5 kB] 641s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 libglvnd0 arm64 1.7.0-1build1 [60.6 kB] 641s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-glx0 arm64 1.17.0-2 [25.5 kB] 641s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libxxf86vm1 arm64 1:1.1.4-1build4 [9130 B] 641s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libglx-mesa0 arm64 25.0.1-2ubuntu1 [151 kB] 641s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libglx0 arm64 1.7.0-1build1 [33.2 kB] 641s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libgl1 arm64 1.7.0-1build1 [106 kB] 641s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgl2ps1.4 arm64 1.4.2+dfsg1-2build1 [40.6 kB] 641s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 libglew2.2 arm64 2.2.0-4build1 [191 kB] 641s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 641s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-310 arm64 1.14.5+repack-3 [1331 kB] 641s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [59.8 kB] 641s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhwloc15 arm64 2.12.0-1 [162 kB] 641s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 641s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 641s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 641s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 641s Get:78 http://ftpmaster.internal/ubuntu plucky/main arm64 libjsoncpp26 arm64 1.9.6-3 [78.7 kB] 641s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 libkim-api2 arm64 2.3.0-1ubuntu1 [565 kB] 642s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 642s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 libnetcdf22 arm64 1:4.9.3-1 [504 kB] 642s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmunge2 arm64 0.5.16-1 [15.2 kB] 642s Get:83 http://ftpmaster.internal/ubuntu plucky/main arm64 libpciaccess0 arm64 0.17-3build1 [18.9 kB] 642s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu4 [12.4 kB] 642s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1build1 [37.6 kB] 642s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhwloc-plugins arm64 2.12.0-1 [15.9 kB] 642s Get:87 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpmix2t64 arm64 5.0.6-5 [666 kB] 642s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 libibumad3 arm64 55.0-1ubuntu1 [29.8 kB] 642s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 libibmad5 arm64 55.0-1ubuntu1 [43.3 kB] 642s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 libucx0 arm64 1.18.1+ds-2 [1161 kB] 642s Get:91 http://ftpmaster.internal/ubuntu plucky/universe arm64 libopenmpi40 arm64 5.0.7-1 [2419 kB] 642s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpnetcdf6 arm64 1.14.0-2 [971 kB] 642s Get:93 http://ftpmaster.internal/ubuntu plucky/universe arm64 libvoro++1 arm64 0.5+revert-to-0.4.6+dfsg1-1 [101 kB] 642s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 libogg0 arm64 1.3.5-3build1 [22.6 kB] 642s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 libopengl0 arm64 1.7.0-1build1 [35.1 kB] 642s Get:96 http://ftpmaster.internal/ubuntu plucky/universe arm64 proj-data all 9.5.1-1 [7924 kB] 643s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 643s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 643s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 643s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 643s Get:101 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 643s Get:102 http://ftpmaster.internal/ubuntu plucky/universe arm64 libproj25 arm64 9.5.1-1 [1342 kB] 644s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtbbbind-2-5 arm64 2022.0.0-2 [15.1 kB] 644s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtbbmalloc2 arm64 2022.0.0-2 [38.9 kB] 644s Get:105 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtbb12 arm64 2022.0.0-2 [71.3 kB] 644s Get:106 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 644s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 libtheoradec1 arm64 1.2.0~alpha1+dfsg-5 [57.0 kB] 644s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 libtheoraenc1 arm64 1.2.0~alpha1+dfsg-5 [107 kB] 644s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 644s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 644s Get:111 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 644s Get:112 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 644s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 libvtk9.3 arm64 9.3.0+dfsg1-4ubuntu1 [24.0 MB] 646s Get:114 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblammps0t64 arm64 20240207+dfsg-3build3 [6834 kB] 647s Get:115 http://ftpmaster.internal/ubuntu plucky/universe arm64 openmpi-common all 5.0.7-1 [97.9 kB] 647s Get:116 http://ftpmaster.internal/ubuntu plucky/main arm64 libnl-3-dev arm64 3.7.0-1 [105 kB] 647s Get:117 http://ftpmaster.internal/ubuntu plucky/main arm64 libnl-route-3-dev arm64 3.7.0-1 [226 kB] 647s Get:118 http://ftpmaster.internal/ubuntu plucky/main arm64 libibverbs-dev arm64 55.0-1ubuntu1 [698 kB] 647s Get:119 http://ftpmaster.internal/ubuntu plucky/main arm64 libnuma-dev arm64 2.0.18-1build1 [39.6 kB] 647s Get:120 http://ftpmaster.internal/ubuntu plucky/main arm64 libltdl7 arm64 2.5.4-4 [43.0 kB] 647s Get:121 http://ftpmaster.internal/ubuntu plucky/main arm64 libltdl-dev arm64 2.5.4-4 [173 kB] 647s Get:122 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhwloc-dev arm64 2.12.0-1 [266 kB] 647s Get:123 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 647s Get:124 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpmix-dev arm64 5.0.6-5 [4055 kB] 648s Get:125 http://ftpmaster.internal/ubuntu plucky/universe arm64 openmpi-bin arm64 5.0.7-1 [195 kB] 648s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 libopenmpi-dev arm64 5.0.7-1 [1085 kB] 648s Get:127 http://ftpmaster.internal/ubuntu plucky/universe arm64 mpi-default-dev arm64 1.18 [3324 B] 648s Get:128 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblammps-dev arm64 20240207+dfsg-3build3 [112 kB] 648s Get:129 http://ftpmaster.internal/ubuntu plucky/universe arm64 mpi-default-bin arm64 1.18 [2510 B] 648s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-lammps arm64 20240207+dfsg-3build3 [70.5 kB] 648s Fetched 185 MB in 17s (10.6 MB/s) 649s Selecting previously unselected package m4. 649s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 649s Preparing to unpack .../000-m4_1.4.19-7_arm64.deb ... 649s Unpacking m4 (1.4.19-7) ... 649s Selecting previously unselected package autoconf. 649s Preparing to unpack .../001-autoconf_2.72-3ubuntu1_all.deb ... 649s Unpacking autoconf (2.72-3ubuntu1) ... 649s Selecting previously unselected package autotools-dev. 649s Preparing to unpack .../002-autotools-dev_20220109.1_all.deb ... 649s Unpacking autotools-dev (20220109.1) ... 649s Selecting previously unselected package automake. 649s Preparing to unpack .../003-automake_1%3a1.17-3ubuntu1_all.deb ... 649s Unpacking automake (1:1.17-3ubuntu1) ... 649s Selecting previously unselected package libisl23:arm64. 649s Preparing to unpack .../004-libisl23_0.27-1_arm64.deb ... 649s Unpacking libisl23:arm64 (0.27-1) ... 649s Selecting previously unselected package libmpc3:arm64. 649s Preparing to unpack .../005-libmpc3_1.3.1-1build2_arm64.deb ... 649s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 649s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 649s Preparing to unpack .../006-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 649s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 650s Selecting previously unselected package cpp-14. 650s Preparing to unpack .../007-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 650s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 650s Selecting previously unselected package fonts-dejavu-mono. 650s Preparing to unpack .../008-fonts-dejavu-mono_2.37-8_all.deb ... 650s Unpacking fonts-dejavu-mono (2.37-8) ... 650s Selecting previously unselected package fonts-dejavu-core. 650s Preparing to unpack .../009-fonts-dejavu-core_2.37-8_all.deb ... 650s Unpacking fonts-dejavu-core (2.37-8) ... 650s Selecting previously unselected package fontconfig-config. 650s Preparing to unpack .../010-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 650s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 650s Selecting previously unselected package libcc1-0:arm64. 650s Preparing to unpack .../011-libcc1-0_15-20250222-0ubuntu1_arm64.deb ... 650s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ... 650s Selecting previously unselected package libgomp1:arm64. 650s Preparing to unpack .../012-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 650s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 650s Selecting previously unselected package libitm1:arm64. 650s Preparing to unpack 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to unpack .../023-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ... 652s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 652s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 652s Preparing to unpack .../024-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 652s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 653s Selecting previously unselected package gfortran-14. 653s Preparing to unpack .../025-gfortran-14_14.2.0-17ubuntu3_arm64.deb ... 653s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 653s Selecting previously unselected package libaec0:arm64. 653s Preparing to unpack .../026-libaec0_1.1.3-1_arm64.deb ... 653s Unpacking libaec0:arm64 (1.1.3-1) ... 653s Selecting previously unselected package libllvm17t64:arm64. 653s Preparing to unpack .../027-libllvm17t64_1%3a17.0.6-21_arm64.deb ... 653s Unpacking libllvm17t64:arm64 (1:17.0.6-21) ... 654s Selecting previously unselected package libamd-comgr2:arm64. 654s Preparing to unpack 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Unpacking libcairo2:arm64 (1.18.2-2) ... 655s Selecting previously unselected package libdeflate0:arm64. 655s Preparing to unpack .../039-libdeflate0_1.23-1_arm64.deb ... 655s Unpacking libdeflate0:arm64 (1.23-1) ... 655s Selecting previously unselected package libdouble-conversion3:arm64. 655s Preparing to unpack .../040-libdouble-conversion3_3.3.1-1_arm64.deb ... 655s Unpacking libdouble-conversion3:arm64 (3.3.1-1) ... 655s Selecting previously unselected package libevent-2.1-7t64:arm64. 655s Preparing to unpack .../041-libevent-2.1-7t64_2.1.12-stable-10_arm64.deb ... 655s Unpacking libevent-2.1-7t64:arm64 (2.1.12-stable-10) ... 655s Selecting previously unselected package libevent-extra-2.1-7t64:arm64. 655s Preparing to unpack .../042-libevent-extra-2.1-7t64_2.1.12-stable-10_arm64.deb ... 655s Unpacking libevent-extra-2.1-7t64:arm64 (2.1.12-stable-10) ... 655s Selecting previously unselected package libevent-pthreads-2.1-7t64:arm64. 655s Preparing to unpack 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libfftw3-double3:arm64. 656s Preparing to unpack .../048-libfftw3-double3_3.3.10-2fakesync1build1_arm64.deb ... 656s Unpacking libfftw3-double3:arm64 (3.3.10-2fakesync1build1) ... 656s Selecting previously unselected package libwayland-server0:arm64. 656s Preparing to unpack .../049-libwayland-server0_1.23.1-3_arm64.deb ... 656s Unpacking libwayland-server0:arm64 (1.23.1-3) ... 656s Selecting previously unselected package libx11-xcb1:arm64. 656s Preparing to unpack .../050-libx11-xcb1_2%3a1.8.10-2_arm64.deb ... 656s Unpacking libx11-xcb1:arm64 (2:1.8.10-2) ... 656s Selecting previously unselected package libxcb-dri3-0:arm64. 656s Preparing to unpack .../051-libxcb-dri3-0_1.17.0-2_arm64.deb ... 656s Unpacking libxcb-dri3-0:arm64 (1.17.0-2) ... 656s Selecting previously unselected package libxcb-present0:arm64. 656s Preparing to unpack .../052-libxcb-present0_1.17.0-2_arm64.deb ... 656s Unpacking libxcb-present0:arm64 (1.17.0-2) ... 656s Selecting previously unselected package libxcb-randr0:arm64. 656s Preparing to unpack .../053-libxcb-randr0_1.17.0-2_arm64.deb ... 656s Unpacking libxcb-randr0:arm64 (1.17.0-2) ... 656s Selecting previously unselected package libxcb-sync1:arm64. 656s Preparing to unpack .../054-libxcb-sync1_1.17.0-2_arm64.deb ... 656s Unpacking libxcb-sync1:arm64 (1.17.0-2) ... 656s Selecting previously unselected package libxcb-xfixes0:arm64. 656s Preparing to unpack .../055-libxcb-xfixes0_1.17.0-2_arm64.deb ... 656s Unpacking libxcb-xfixes0:arm64 (1.17.0-2) ... 656s Selecting previously unselected package libxshmfence1:arm64. 656s Preparing to unpack .../056-libxshmfence1_1.3-1build5_arm64.deb ... 656s Unpacking libxshmfence1:arm64 (1.3-1build5) ... 656s Selecting previously unselected package mesa-libgallium:arm64. 656s Preparing to unpack .../057-mesa-libgallium_25.0.1-2ubuntu1_arm64.deb ... 656s Unpacking mesa-libgallium:arm64 (25.0.1-2ubuntu1) ... 657s Selecting previously unselected package libgbm1:arm64. 657s Preparing to unpack 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Unpacking libxxf86vm1:arm64 (1:1.1.4-1build4) ... 657s Selecting previously unselected package libglx-mesa0:arm64. 657s Preparing to unpack .../064-libglx-mesa0_25.0.1-2ubuntu1_arm64.deb ... 657s Unpacking libglx-mesa0:arm64 (25.0.1-2ubuntu1) ... 657s Selecting previously unselected package libglx0:arm64. 657s Preparing to unpack .../065-libglx0_1.7.0-1build1_arm64.deb ... 657s Unpacking libglx0:arm64 (1.7.0-1build1) ... 657s Selecting previously unselected package libgl1:arm64. 657s Preparing to unpack .../066-libgl1_1.7.0-1build1_arm64.deb ... 657s Unpacking libgl1:arm64 (1.7.0-1build1) ... 657s Selecting previously unselected package libgl2ps1.4. 657s Preparing to unpack .../067-libgl2ps1.4_1.4.2+dfsg1-2build1_arm64.deb ... 657s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 657s Selecting previously unselected package libglew2.2:arm64. 657s Preparing to unpack .../068-libglew2.2_2.2.0-4build1_arm64.deb ... 657s Unpacking libglew2.2:arm64 (2.2.0-4build1) ... 657s Selecting previously unselected package libsz2:arm64. 657s Preparing to unpack .../069-libsz2_1.1.3-1_arm64.deb ... 657s Unpacking libsz2:arm64 (1.1.3-1) ... 657s Selecting previously unselected package libhdf5-310:arm64. 657s Preparing to unpack .../070-libhdf5-310_1.14.5+repack-3_arm64.deb ... 657s Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ... 658s Selecting previously unselected package libhdf5-hl-310:arm64. 658s Preparing to unpack .../071-libhdf5-hl-310_1.14.5+repack-3_arm64.deb ... 658s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 658s Selecting previously unselected package libhwloc15:arm64. 658s Preparing to unpack .../072-libhwloc15_2.12.0-1_arm64.deb ... 658s Unpacking libhwloc15:arm64 (2.12.0-1) ... 658s Selecting previously unselected package libjpeg-turbo8:arm64. 658s Preparing to unpack .../073-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 658s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 658s Selecting previously unselected package libjpeg8:arm64. 658s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_arm64.deb ... 658s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 658s Selecting previously unselected package libjs-jquery. 658s Preparing to unpack .../075-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 658s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 658s Selecting previously unselected package libjs-jquery-ui. 658s Preparing to unpack .../076-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 658s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 658s Selecting previously unselected package libjsoncpp26:arm64. 658s Preparing to unpack .../077-libjsoncpp26_1.9.6-3_arm64.deb ... 658s Unpacking libjsoncpp26:arm64 (1.9.6-3) ... 658s Selecting previously unselected package libkim-api2:arm64. 658s Preparing to unpack .../078-libkim-api2_2.3.0-1ubuntu1_arm64.deb ... 658s Unpacking libkim-api2:arm64 (2.3.0-1ubuntu1) ... 658s Selecting previously unselected package liblapack3:arm64. 658s Preparing to unpack .../079-liblapack3_3.12.1-2_arm64.deb ... 658s Unpacking liblapack3:arm64 (3.12.1-2) ... 658s Selecting previously unselected package libnetcdf22:arm64. 658s Preparing to unpack .../080-libnetcdf22_1%3a4.9.3-1_arm64.deb ... 658s Unpacking libnetcdf22:arm64 (1:4.9.3-1) ... 658s Selecting previously unselected package libmunge2:arm64. 658s Preparing to unpack .../081-libmunge2_0.5.16-1_arm64.deb ... 658s Unpacking libmunge2:arm64 (0.5.16-1) ... 658s Selecting previously unselected package libpciaccess0:arm64. 658s Preparing to unpack .../082-libpciaccess0_0.17-3build1_arm64.deb ... 658s Unpacking libpciaccess0:arm64 (0.17-3build1) ... 658s Selecting previously unselected package libxnvctrl0:arm64. 658s Preparing to unpack .../083-libxnvctrl0_510.47.03-0ubuntu4_arm64.deb ... 658s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 658s Selecting previously unselected package ocl-icd-libopencl1:arm64. 659s Preparing to unpack .../084-ocl-icd-libopencl1_2.3.2-1build1_arm64.deb ... 659s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 659s Selecting previously unselected package libhwloc-plugins:arm64. 659s Preparing to unpack .../085-libhwloc-plugins_2.12.0-1_arm64.deb ... 659s Unpacking libhwloc-plugins:arm64 (2.12.0-1) ... 659s Selecting previously unselected package libpmix2t64:arm64. 659s Preparing to unpack .../086-libpmix2t64_5.0.6-5_arm64.deb ... 659s Unpacking libpmix2t64:arm64 (5.0.6-5) ... 659s Selecting previously unselected package libibumad3:arm64. 659s Preparing to unpack .../087-libibumad3_55.0-1ubuntu1_arm64.deb ... 659s Unpacking libibumad3:arm64 (55.0-1ubuntu1) ... 659s Selecting previously unselected package libibmad5:arm64. 659s Preparing to unpack .../088-libibmad5_55.0-1ubuntu1_arm64.deb ... 659s Unpacking libibmad5:arm64 (55.0-1ubuntu1) ... 659s Selecting previously unselected package libucx0:arm64. 659s Preparing to unpack .../089-libucx0_1.18.1+ds-2_arm64.deb ... 659s Unpacking libucx0:arm64 (1.18.1+ds-2) ... 659s Selecting previously unselected package libopenmpi40:arm64. 659s Preparing to unpack .../090-libopenmpi40_5.0.7-1_arm64.deb ... 659s Unpacking libopenmpi40:arm64 (5.0.7-1) ... 659s Selecting previously unselected package libpnetcdf6:arm64. 659s Preparing to unpack .../091-libpnetcdf6_1.14.0-2_arm64.deb ... 659s Unpacking libpnetcdf6:arm64 (1.14.0-2) ... 659s Selecting previously unselected package libvoro++1. 659s Preparing to unpack .../092-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_arm64.deb ... 659s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 659s Selecting previously unselected package libogg0:arm64. 659s Preparing to unpack .../093-libogg0_1.3.5-3build1_arm64.deb ... 659s Unpacking libogg0:arm64 (1.3.5-3build1) ... 659s Selecting previously unselected package libopengl0:arm64. 659s Preparing to unpack .../094-libopengl0_1.7.0-1build1_arm64.deb ... 659s Unpacking libopengl0:arm64 (1.7.0-1build1) ... 659s Selecting previously unselected package proj-data. 659s Preparing to unpack .../095-proj-data_9.5.1-1_all.deb ... 659s Unpacking proj-data (9.5.1-1) ... 660s Selecting previously unselected package libjbig0:arm64. 660s Preparing to unpack .../096-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 660s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 660s Selecting previously unselected package liblerc4:arm64. 660s Preparing to unpack .../097-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 660s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 660s Selecting previously unselected package libsharpyuv0:arm64. 660s Preparing to unpack .../098-libsharpyuv0_1.5.0-0.1_arm64.deb ... 660s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 660s Selecting previously unselected package libwebp7:arm64. 660s Preparing to unpack .../099-libwebp7_1.5.0-0.1_arm64.deb ... 660s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 660s Selecting previously unselected package libtiff6:arm64. 660s Preparing to unpack .../100-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 660s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 660s Selecting previously unselected package libproj25:arm64. 660s Preparing to unpack .../101-libproj25_9.5.1-1_arm64.deb ... 660s Unpacking libproj25:arm64 (9.5.1-1) ... 660s Selecting previously unselected package libtbbbind-2-5:arm64. 660s Preparing to unpack .../102-libtbbbind-2-5_2022.0.0-2_arm64.deb ... 660s Unpacking libtbbbind-2-5:arm64 (2022.0.0-2) ... 660s Selecting previously unselected package libtbbmalloc2:arm64. 660s Preparing to unpack .../103-libtbbmalloc2_2022.0.0-2_arm64.deb ... 660s Unpacking libtbbmalloc2:arm64 (2022.0.0-2) ... 660s Selecting previously unselected package libtbb12:arm64. 660s Preparing to unpack .../104-libtbb12_2022.0.0-2_arm64.deb ... 660s Unpacking libtbb12:arm64 (2022.0.0-2) ... 660s Selecting previously unselected package libtcl8.6:arm64. 660s Preparing to unpack .../105-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 660s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 660s Selecting previously unselected package libtheoradec1:arm64. 660s Preparing to unpack .../106-libtheoradec1_1.2.0~alpha1+dfsg-5_arm64.deb ... 660s Unpacking libtheoradec1:arm64 (1.2.0~alpha1+dfsg-5) ... 660s Selecting previously unselected package libtheoraenc1:arm64. 660s Preparing to unpack .../107-libtheoraenc1_1.2.0~alpha1+dfsg-5_arm64.deb ... 660s Unpacking libtheoraenc1:arm64 (1.2.0~alpha1+dfsg-5) ... 660s Selecting previously unselected package libxft2:arm64. 660s Preparing to unpack .../108-libxft2_2.3.6-1build1_arm64.deb ... 660s Unpacking libxft2:arm64 (2.3.6-1build1) ... 660s Selecting previously unselected package x11-common. 660s Preparing to unpack .../109-x11-common_1%3a7.7+23ubuntu3_all.deb ... 660s Unpacking x11-common (1:7.7+23ubuntu3) ... 660s Selecting previously unselected package libxss1:arm64. 660s Preparing to unpack .../110-libxss1_1%3a1.2.3-1build3_arm64.deb ... 660s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 660s Selecting previously unselected package libtk8.6:arm64. 660s Preparing to unpack .../111-libtk8.6_8.6.16-1_arm64.deb ... 660s Unpacking libtk8.6:arm64 (8.6.16-1) ... 660s Selecting previously unselected package libvtk9.3:arm64. 660s Preparing to unpack .../112-libvtk9.3_9.3.0+dfsg1-4ubuntu1_arm64.deb ... 660s Unpacking libvtk9.3:arm64 (9.3.0+dfsg1-4ubuntu1) ... 662s Selecting previously unselected package liblammps0t64:arm64. 662s Preparing to unpack .../113-liblammps0t64_20240207+dfsg-3build3_arm64.deb ... 662s Unpacking liblammps0t64:arm64 (20240207+dfsg-3build3) ... 662s Selecting previously unselected package openmpi-common. 662s Preparing to unpack .../114-openmpi-common_5.0.7-1_all.deb ... 662s Unpacking openmpi-common (5.0.7-1) ... 662s Selecting previously unselected package libnl-3-dev:arm64. 662s Preparing to unpack .../115-libnl-3-dev_3.7.0-1_arm64.deb ... 662s Unpacking libnl-3-dev:arm64 (3.7.0-1) ... 662s Selecting previously unselected package libnl-route-3-dev:arm64. 662s Preparing to unpack .../116-libnl-route-3-dev_3.7.0-1_arm64.deb ... 662s Unpacking libnl-route-3-dev:arm64 (3.7.0-1) ... 662s Selecting previously unselected package libibverbs-dev:arm64. 662s Preparing to unpack .../117-libibverbs-dev_55.0-1ubuntu1_arm64.deb ... 662s Unpacking libibverbs-dev:arm64 (55.0-1ubuntu1) ... 662s Selecting previously unselected package libnuma-dev:arm64. 662s Preparing to unpack .../118-libnuma-dev_2.0.18-1build1_arm64.deb ... 662s Unpacking libnuma-dev:arm64 (2.0.18-1build1) ... 662s Selecting previously unselected package libltdl7:arm64. 662s Preparing to unpack .../119-libltdl7_2.5.4-4_arm64.deb ... 662s Unpacking libltdl7:arm64 (2.5.4-4) ... 662s Selecting previously unselected package libltdl-dev:arm64. 662s Preparing to unpack .../120-libltdl-dev_2.5.4-4_arm64.deb ... 662s Unpacking libltdl-dev:arm64 (2.5.4-4) ... 662s Selecting previously unselected package libhwloc-dev:arm64. 662s Preparing to unpack .../121-libhwloc-dev_2.12.0-1_arm64.deb ... 662s Unpacking libhwloc-dev:arm64 (2.12.0-1) ... 662s Selecting previously unselected package zlib1g-dev:arm64. 662s Preparing to unpack .../122-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 662s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 663s Selecting previously unselected package libpmix-dev:arm64. 663s Preparing to unpack .../123-libpmix-dev_5.0.6-5_arm64.deb ... 663s Unpacking libpmix-dev:arm64 (5.0.6-5) ... 663s Selecting previously unselected package openmpi-bin. 663s Preparing to unpack .../124-openmpi-bin_5.0.7-1_arm64.deb ... 663s Unpacking openmpi-bin (5.0.7-1) ... 663s Selecting previously unselected package libopenmpi-dev:arm64. 663s Preparing to unpack .../125-libopenmpi-dev_5.0.7-1_arm64.deb ... 663s Unpacking libopenmpi-dev:arm64 (5.0.7-1) ... 663s Selecting previously unselected package mpi-default-dev. 663s Preparing to unpack .../126-mpi-default-dev_1.18_arm64.deb ... 663s Unpacking mpi-default-dev (1.18) ... 663s Selecting previously unselected package liblammps-dev. 663s Preparing to unpack .../127-liblammps-dev_20240207+dfsg-3build3_arm64.deb ... 663s Unpacking liblammps-dev (20240207+dfsg-3build3) ... 663s Selecting previously unselected package mpi-default-bin. 663s Preparing to unpack .../128-mpi-default-bin_1.18_arm64.deb ... 663s Unpacking mpi-default-bin (1.18) ... 663s Selecting previously unselected package python3-lammps. 663s Preparing to unpack .../129-python3-lammps_20240207+dfsg-3build3_arm64.deb ... 663s Unpacking python3-lammps (20240207+dfsg-3build3) ... 663s Setting up libxcb-dri3-0:arm64 (1.17.0-2) ... 663s Setting up libtbbmalloc2:arm64 (2022.0.0-2) ... 663s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 663s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 663s Setting up libwayland-server0:arm64 (1.23.1-3) ... 663s Setting up libx11-xcb1:arm64 (2:1.8.10-2) ... 663s Setting up libpciaccess0:arm64 (0.17-3build1) ... 663s Setting up libdouble-conversion3:arm64 (3.3.1-1) ... 663s Setting up libxcb-xfixes0:arm64 (1.17.0-2) ... 663s Setting up libogg0:arm64 (1.3.5-3build1) ... 663s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 663s Setting up proj-data (9.5.1-1) ... 663s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 663s Setting up libxcb-render0:arm64 (1.17.0-2) ... 663s Setting up libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 663s Setting up libglvnd0:arm64 (1.7.0-1build1) ... 663s Setting up libxcb-glx0:arm64 (1.17.0-2) ... 663s Setting up libevent-openssl-2.1-7t64:arm64 (2.1.12-stable-10) ... 663s Setting up x11-common (1:7.7+23ubuntu3) ... 664s Setting up libibumad3:arm64 (55.0-1ubuntu1) ... 664s Setting up libdeflate0:arm64 (1.23-1) ... 664s Setting up m4 (1.4.19-7) ... 664s Setting up libevent-2.1-7t64:arm64 (2.1.12-stable-10) ... 664s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 664s Setting up libibmad5:arm64 (55.0-1ubuntu1) ... 664s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 664s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 664s Setting up libaec0:arm64 (1.1.3-1) ... 664s Setting up libopengl0:arm64 (1.7.0-1build1) ... 664s Setting up libxxf86vm1:arm64 (1:1.1.4-1build4) ... 664s Setting up libnuma-dev:arm64 (2.0.18-1build1) ... 664s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 664s Setting up libxcb-present0:arm64 (1.17.0-2) ... 664s Setting up libtheoraenc1:arm64 (1.2.0~alpha1+dfsg-5) ... 664s Setting up autotools-dev (20220109.1) ... 664s Setting up libblas3:arm64 (3.12.1-2) ... 664s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 664s Setting up libmunge2:arm64 (0.5.16-1) ... 664s Setting up libllvm17t64:arm64 (1:17.0.6-21) ... 664s Setting up libxcb-sync1:arm64 (1.17.0-2) ... 664s Setting up libjsoncpp26:arm64 (1.9.6-3) ... 664s Setting up fonts-dejavu-mono (2.37-8) ... 664s Setting up libhwloc15:arm64 (2.12.0-1) ... 664s Setting up libmpc3:arm64 (1.3.1-1build2) ... 664s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... 664s Setting up fonts-dejavu-core (2.37-8) ... 664s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 664s Setting up libltdl7:arm64 (2.5.4-4) ... 664s Setting up libfftw3-double3:arm64 (3.3.10-2fakesync1build1) ... 664s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ... 664s Setting up libvulkan1:arm64 (1.4.304.0-1) ... 664s Setting up autoconf (2.72-3ubuntu1) ... 664s Setting up libevent-extra-2.1-7t64:arm64 (2.1.12-stable-10) ... 664s Setting up libwebp7:arm64 (1.5.0-0.1) ... 664s Setting up libubsan1:arm64 (15-20250222-0ubuntu1) ... 664s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 664s Setting up libnl-3-dev:arm64 (3.7.0-1) ... 664s Setting up ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 664s Setting up libxshmfence1:arm64 (1.3-1build5) ... 664s Setting up libhwasan0:arm64 (15-20250222-0ubuntu1) ... 664s Setting up libxcb-randr0:arm64 (1.17.0-2) ... 664s Setting up libasan8:arm64 (15-20250222-0ubuntu1) ... 664s Setting up openmpi-common (5.0.7-1) ... 664s Setting up librdmacm1t64:arm64 (55.0-1ubuntu1) ... 664s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 664s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 664s Setting up libtsan2:arm64 (15-20250222-0ubuntu1) ... 664s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 664s Setting up libisl23:arm64 (0.27-1) ... 664s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 664s Setting up libcc1-0:arm64 (15-20250222-0ubuntu1) ... 664s Setting up liblsan0:arm64 (15-20250222-0ubuntu1) ... 664s Setting up libhsakmt1:arm64 (5.7.0-1build1) ... 664s Setting up libsz2:arm64 (1.1.3-1) ... 664s Setting up libitm1:arm64 (15-20250222-0ubuntu1) ... 664s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 664s Setting up automake (1:1.17-3ubuntu1) ... 664s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode 664s Setting up libfabric1:arm64 (1.17.0-3.1) ... 664s Setting up mesa-libgallium:arm64 (25.0.1-2ubuntu1) ... 664s Setting up liblapack3:arm64 (3.12.1-2) ... 664s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 664s Setting up libgbm1:arm64 (25.0.1-2ubuntu1) ... 664s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 664s Setting up libgl1-mesa-dri:arm64 (25.0.1-2ubuntu1) ... 664s Setting up libkim-api2:arm64 (2.3.0-1ubuntu1) ... 664s Setting up libhwloc-plugins:arm64 (2.12.0-1) ... 664s Setting up libtbbbind-2-5:arm64 (2022.0.0-2) ... 664s Setting up libnl-route-3-dev:arm64 (3.7.0-1) ... 664s Setting up libltdl-dev:arm64 (2.5.4-4) ... 664s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 664s Setting up libevent-dev (2.1.12-stable-10) ... 664s Setting up libpmix2t64:arm64 (5.0.6-5) ... 664s Setting up libhdf5-310:arm64 (1.14.5+repack-3) ... 664s Setting up cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 664s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 664s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 664s Setting up libhwloc-dev:arm64 (2.12.0-1) ... 664s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 664s Setting up libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 664s Setting up libpmix-dev:arm64 (5.0.6-5) ... 664s Setting up libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 664s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 664s Setting up libxft2:arm64 (2.3.6-1build1) ... 664s Setting up libglx-mesa0:arm64 (25.0.1-2ubuntu1) ... 664s Setting up libglx0:arm64 (1.7.0-1build1) ... 664s Setting up libproj25:arm64 (9.5.1-1) ... 664s Setting up libtk8.6:arm64 (8.6.16-1) ... 664s Setting up libnetcdf22:arm64 (1:4.9.3-1) ... 664s Setting up libtbb12:arm64 (2022.0.0-2) ... 664s Setting up libibverbs-dev:arm64 (55.0-1ubuntu1) ... 664s Setting up libcairo2:arm64 (1.18.2-2) ... 664s Setting up libgl1:arm64 (1.7.0-1build1) ... 664s Setting up libamdhip64-5 (5.7.1-5) ... 664s Setting up libtheoradec1:arm64 (1.2.0~alpha1+dfsg-5) ... 664s Setting up libglew2.2:arm64 (2.2.0-4build1) ... 664s Setting up cpp-14 (14.2.0-17ubuntu3) ... 664s Setting up gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 664s Setting up libucx0:arm64 (1.18.1+ds-2) ... 664s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 664s Setting up gcc-14 (14.2.0-17ubuntu3) ... 664s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 664s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 664s Setting up libopenmpi40:arm64 (5.0.7-1) ... 664s Setting up libpnetcdf6:arm64 (1.14.0-2) ... 664s Setting up libvtk9.3:arm64 (9.3.0+dfsg1-4ubuntu1) ... 664s Setting up openmpi-bin (5.0.7-1) ... 664s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 664s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 664s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 664s Setting up mpi-default-bin (1.18) ... 664s Setting up liblammps0t64:arm64 (20240207+dfsg-3build3) ... 664s Setting up libopenmpi-dev:arm64 (5.0.7-1) ... 664s update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode 664s Setting up mpi-default-dev (1.18) ... 664s Setting up liblammps-dev (20240207+dfsg-3build3) ... 664s Setting up python3-lammps (20240207+dfsg-3build3) ... 665s Processing triggers for man-db (2.13.0-1) ... 666s Processing triggers for install-info (7.1.1-1) ... 666s Processing triggers for libc-bin (2.41-1ubuntu1) ... 781s autopkgtest [01:30:32]: test command1: cd python/examples; python3 demo.py 781s autopkgtest [01:30:32]: test command1: [----------------------- 782s LAMMPS (7 Feb 2024 - Update 1) 782s 782s Python output: 782s Natoms, mass, x[0][0] coord = 4000 1.0 16.651271530416228 782s Temperature from compute = 0.7683848148006238 782s Energy from equal-style variable = -5.774392400140566 782s Velocity component from atom-style variable = -0.1669643026996425 782s Volume from get_thermo = 4738.213693437576 782s Natoms from get_natoms = 4000 782s Global coords from gather_atoms = 16.651271530416228 16.790010773016775 0.19047524160174037 782s Changed x[0][0] via scatter_atoms = 17.651271530416228 782s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 782s using 1 OpenMP thread(s) per MPI task 782s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 782s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 782s 1 by 1 by 1 MPI processor grid 782s Created 4000 atoms 782s using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 782s create_atoms CPU = 0.002 seconds 782s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 782s Neighbor list info ... 782s update: every = 20 steps, delay = 0 steps, check = no 782s max neighbors/atom: 2000, page size: 100000 782s master list distance cutoff = 2.8 782s ghost atom cutoff = 2.8 782s binsize = 1.4, bins = 12 12 12 782s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 782s (1) pair lj/cut, perpetual 782s attributes: half, newton on 782s pair build: half/bin/atomonly/newton 782s stencil: half/bin/3d 782s bin: standard 782s Setting up Verlet run ... 782s Unit style : lj 782s Current step : 0 782s Time step : 0.005 782s Per MPI rank memory allocation (min/avg/max) = 3.763 | 3.763 | 3.763 Mbytes 782s Step Temp E_pair E_mol TotEng Press 782s 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 782s 100 0.76838481 -5.7743924 0 -4.6221033 0.13682061 782s Loop time of 0.275233 on 1 procs for 100 steps with 4000 atoms 782s 782s Performance: 156958.107 tau/day, 363.329 timesteps/s, 1.453 Matom-step/s 782s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 782s 782s MPI task timing breakdown: 782s Section | min time | avg time | max time |%varavg| %total 782s --------------------------------------------------------------- 782s Pair | 0.23144 | 0.23144 | 0.23144 | 0.0 | 84.09 782s Neigh | 0.028836 | 0.028836 | 0.028836 | 0.0 | 10.48 782s Comm | 0.0077088 | 0.0077088 | 0.0077088 | 0.0 | 2.80 782s Output | 4.3483e-05 | 4.3483e-05 | 4.3483e-05 | 0.0 | 0.02 782s Modify | 0.006263 | 0.006263 | 0.006263 | 0.0 | 2.28 782s Other | | 0.0009423 | | | 0.34 782s 782s Nlocal: 4000 ave 4000 max 4000 min 782s Histogram: 1 0 0 0 0 0 0 0 0 0 782s Nghost: 5758 ave 5758 max 5758 min 782s Histogram: 1 0 0 0 0 0 0 0 0 0 782s Neighs: 150488 ave 150488 max 150488 min 782s Histogram: 1 0 0 0 0 0 0 0 0 0 782s 782s Total # of neighbors = 150488 782s Ave neighs/atom = 37.622 782s Neighbor list builds = 5 782s Dangerous builds not checked 782s Total wall time: 0:00:00 783s autopkgtest [01:30:34]: test command1: -----------------------] 783s autopkgtest [01:30:34]: test command1: - - - - - - - - - - results - - - - - - - - - - 783s command1 PASS 784s autopkgtest [01:30:35]: @@@@@@@@@@@@@@@@@@@@ summary 784s crack PASS 784s dipole PASS 784s ellipse PASS 784s flow PASS 784s friction PASS 784s hugo PASS 784s command1 PASS 789s nova [W] Using flock in prodstack6-arm64 789s flock: timeout while waiting to get lock 789s Creating nova instance adt-plucky-arm64-lammps-20250316-011731-juju-7f2275-prod-proposed-migration-environment-20-03b76f86-06de-447c-b479-4bac9ab4e665 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 789s nova [W] Timed out waiting for 56f383f3-a1e0-46b5-8972-4443d7da4ead to get deleted. 789s nova [W] Using flock in prodstack6-arm64 789s Creating nova instance adt-plucky-arm64-lammps-20250316-011731-juju-7f2275-prod-proposed-migration-environment-20-03b76f86-06de-447c-b479-4bac9ab4e665 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 789s nova [W] Timed out waiting for 86c082cf-7153-49ae-ab09-3305569f79ac to get deleted.