0s autopkgtest [09:33:22]: starting date and time: 2024-11-26 09:33:22+0000 0s autopkgtest [09:33:22]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [09:33:22]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.nw0untca/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:astropy --apt-upgrade imexam --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=astropy/7.0.0-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-15.secgroup --name adt-plucky-arm64-imexam-20241126-093322-juju-7f2275-prod-proposed-migration-environment-15-55a78d0f-71c9-41bb-9351-e463f09029b6 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 72s autopkgtest [09:34:34]: testbed dpkg architecture: arm64 73s autopkgtest [09:34:35]: testbed apt version: 2.9.8 73s autopkgtest [09:34:35]: @@@@@@@@@@@@@@@@@@@@ test bed setup 74s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 74s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 74s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [58.7 kB] 74s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.2 kB] 74s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [811 kB] 74s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [88.7 kB] 74s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [58.2 kB] 74s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [654 kB] 74s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [19.5 kB] 75s Fetched 1788 kB in 1s (1815 kB/s) 75s Reading package lists... 78s Reading package lists... 78s Building dependency tree... 78s Reading state information... 79s Calculating upgrade... 80s The following package was automatically installed and is no longer required: 80s libsgutils2-1.46-2 80s Use 'sudo apt autoremove' to remove it. 80s The following NEW packages will be installed: 80s libsgutils2-1.48 80s The following packages will be upgraded: 80s apt apt-utils bash bpftrace curl debconf debconf-i18n distro-info 80s dracut-install fwupd-signed gir1.2-girepository-2.0 gir1.2-glib-2.0 hostname 80s init init-system-helpers libapt-pkg6.0t64 libaudit-common libaudit1 80s libcurl3t64-gnutls libcurl4t64 libgirepository-1.0-1 libglib2.0-0t64 80s libglib2.0-data liblzma5 libpam-modules libpam-modules-bin libpam-runtime 80s libpam0g libplymouth5 libpolkit-agent-1-0 libpolkit-gobject-1-0 libselinux1 80s libsemanage-common libsemanage2 linux-base lto-disabled-list lxd-installer 80s openssh-client openssh-server openssh-sftp-server pinentry-curses plymouth 80s plymouth-theme-ubuntu-text python-apt-common python3-apt python3-blinker 80s python3-dbus python3-debconf python3-gi python3-jsonschema-specifications 80s python3-rpds-py python3-yaml sg3-utils sg3-utils-udev vim-common vim-tiny 80s xxd xz-utils 80s 58 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 80s Need to get 15.0 MB of archives. 80s After this operation, 2697 kB of additional disk space will be used. 80s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 bash arm64 5.2.32-1ubuntu2 [791 kB] 81s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 hostname arm64 3.25 [11.0 kB] 81s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 init-system-helpers all 1.67ubuntu1 [39.1 kB] 81s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma5 arm64 5.6.3-1 [138 kB] 81s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libapt-pkg6.0t64 arm64 2.9.14ubuntu1 [1015 kB] 82s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 apt arm64 2.9.14ubuntu1 [1323 kB] 82s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 apt-utils arm64 2.9.14ubuntu1 [207 kB] 82s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libaudit-common all 1:4.0.2-2ubuntu1 [6578 B] 82s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libaudit1 arm64 1:4.0.2-2ubuntu1 [54.2 kB] 82s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 debconf-i18n all 1.5.87ubuntu1 [204 kB] 83s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-debconf all 1.5.87ubuntu1 [4156 B] 83s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 debconf all 1.5.87ubuntu1 [124 kB] 83s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libpam0g arm64 1.5.3-7ubuntu4 [68.6 kB] 83s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libselinux1 arm64 3.7-3ubuntu1 [81.6 kB] 83s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libpam-modules-bin arm64 1.5.3-7ubuntu4 [50.4 kB] 83s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libpam-modules arm64 1.5.3-7ubuntu4 [285 kB] 83s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 init arm64 1.67ubuntu1 [6428 B] 83s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 openssh-sftp-server arm64 1:9.9p1-3ubuntu2 [36.8 kB] 83s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 openssh-server arm64 1:9.9p1-3ubuntu2 [524 kB] 83s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 openssh-client arm64 1:9.9p1-3ubuntu2 [920 kB] 83s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libpam-runtime all 1.5.3-7ubuntu4 [40.8 kB] 83s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libsemanage-common all 3.7-2build1 [7186 B] 83s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libsemanage2 arm64 3.7-2build1 [92.2 kB] 83s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 distro-info arm64 1.12 [19.4 kB] 83s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 gir1.2-girepository-2.0 arm64 1.82.0-2 [25.2 kB] 83s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 gir1.2-glib-2.0 arm64 2.82.2-3 [182 kB] 83s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libglib2.0-0t64 arm64 2.82.2-3 [1560 kB] 84s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libgirepository-1.0-1 arm64 1.82.0-2 [83.0 kB] 84s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libglib2.0-data all 2.82.2-3 [51.7 kB] 84s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 python-apt-common all 2.9.0ubuntu2 [20.3 kB] 84s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-apt arm64 2.9.0ubuntu2 [188 kB] 84s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dbus arm64 1.3.2-5build4 [109 kB] 84s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-gi arm64 3.50.0-3build1 [279 kB] 84s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-yaml arm64 6.0.2-1build1 [164 kB] 84s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 vim-tiny arm64 2:9.1.0861-1ubuntu1 [805 kB] 84s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 vim-common all 2:9.1.0861-1ubuntu1 [395 kB] 85s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 xxd arm64 2:9.1.0861-1ubuntu1 [67.3 kB] 85s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libplymouth5 arm64 24.004.60-2ubuntu4 [141 kB] 85s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 plymouth-theme-ubuntu-text arm64 24.004.60-2ubuntu4 [9904 B] 85s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 plymouth arm64 24.004.60-2ubuntu4 [135 kB] 85s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 xz-utils arm64 5.6.3-1 [272 kB] 85s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 bpftrace arm64 0.21.2-2ubuntu3 [1854 kB] 86s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 curl arm64 8.11.0-1ubuntu2 [243 kB] 86s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libcurl4t64 arm64 8.11.0-1ubuntu2 [372 kB] 86s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 dracut-install arm64 105-2ubuntu2 [34.7 kB] 86s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 fwupd-signed arm64 1.55+1.7-1 [30.9 kB] 86s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libcurl3t64-gnutls arm64 8.11.0-1ubuntu2 [367 kB] 86s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libpolkit-agent-1-0 arm64 125-2ubuntu1 [16.7 kB] 86s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libpolkit-gobject-1-0 arm64 125-2ubuntu1 [49.4 kB] 86s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libsgutils2-1.48 arm64 1.48-0ubuntu1 [118 kB] 86s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 linux-base all 4.10.1ubuntu1 [34.8 kB] 86s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 lto-disabled-list all 54 [12.2 kB] 86s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 lxd-installer all 10 [5264 B] 86s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-0ubuntu2 [38.5 kB] 86s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-blinker all 1.9.0-1 [10.7 kB] 86s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-rpds-py arm64 0.21.0-2ubuntu1 [302 kB] 86s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jsonschema-specifications all 2023.12.1-2 [9116 B] 86s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 sg3-utils arm64 1.48-0ubuntu1 [999 kB] 87s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 sg3-utils-udev all 1.48-0ubuntu1 [6608 B] 87s Preconfiguring packages ... 87s Fetched 15.0 MB in 7s (2303 kB/s) 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80002 files and directories currently installed.) 88s Preparing to unpack .../bash_5.2.32-1ubuntu2_arm64.deb ... 88s Unpacking bash (5.2.32-1ubuntu2) over (5.2.32-1ubuntu1) ... 88s Setting up bash (5.2.32-1ubuntu2) ... 88s update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80002 files and directories currently installed.) 88s Preparing to unpack .../hostname_3.25_arm64.deb ... 88s Unpacking hostname (3.25) over (3.23+nmu2ubuntu2) ... 88s Setting up hostname (3.25) ... 88s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80002 files and directories currently installed.) 88s Preparing to unpack .../liblzma5_5.6.3-1_arm64.deb ... 88s Unpacking liblzma5:arm64 (5.6.3-1) over (5.6.2-2) ... 88s Setting up liblzma5:arm64 (5.6.3-1) ... 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80002 files and directories currently installed.) 88s Preparing to unpack .../libapt-pkg6.0t64_2.9.14ubuntu1_arm64.deb ... 88s Unpacking libapt-pkg6.0t64:arm64 (2.9.14ubuntu1) over (2.9.8) ... 88s Setting up libapt-pkg6.0t64:arm64 (2.9.14ubuntu1) ... 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80002 files and directories currently installed.) 89s Preparing to unpack .../apt_2.9.14ubuntu1_arm64.deb ... 89s Unpacking apt (2.9.14ubuntu1) over (2.9.8) ... 89s Setting up apt (2.9.14ubuntu1) ... 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79994 files and directories currently installed.) 90s Preparing to unpack .../apt-utils_2.9.14ubuntu1_arm64.deb ... 90s Unpacking apt-utils (2.9.14ubuntu1) over (2.9.8) ... 90s Preparing to unpack .../libaudit-common_1%3a4.0.2-2ubuntu1_all.deb ... 90s Unpacking libaudit-common (1:4.0.2-2ubuntu1) over (1:4.0.1-1ubuntu2) ... 90s Setting up libaudit-common (1:4.0.2-2ubuntu1) ... 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79994 files and directories currently installed.) 90s Preparing to unpack .../libaudit1_1%3a4.0.2-2ubuntu1_arm64.deb ... 90s Unpacking libaudit1:arm64 (1:4.0.2-2ubuntu1) over (1:4.0.1-1ubuntu2) ... 90s Setting up libaudit1:arm64 (1:4.0.2-2ubuntu1) ... 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79994 files and directories currently installed.) 90s Preparing to unpack .../debconf-i18n_1.5.87ubuntu1_all.deb ... 90s Unpacking debconf-i18n (1.5.87ubuntu1) over (1.5.86ubuntu1) ... 90s Preparing to unpack .../python3-debconf_1.5.87ubuntu1_all.deb ... 90s Unpacking python3-debconf (1.5.87ubuntu1) over (1.5.86ubuntu1) ... 90s Preparing to unpack .../debconf_1.5.87ubuntu1_all.deb ... 90s Unpacking debconf (1.5.87ubuntu1) over (1.5.86ubuntu1) ... 91s Setting up debconf (1.5.87ubuntu1) ... 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79994 files and directories currently installed.) 91s Preparing to unpack .../libpam0g_1.5.3-7ubuntu4_arm64.deb ... 91s Unpacking libpam0g:arm64 (1.5.3-7ubuntu4) over (1.5.3-7ubuntu2) ... 91s Setting up libpam0g:arm64 (1.5.3-7ubuntu4) ... 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79994 files and directories currently installed.) 91s Preparing to unpack .../libselinux1_3.7-3ubuntu1_arm64.deb ... 91s Unpacking libselinux1:arm64 (3.7-3ubuntu1) over (3.5-2ubuntu5) ... 91s Setting up libselinux1:arm64 (3.7-3ubuntu1) ... 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79994 files and directories currently installed.) 91s Preparing to unpack .../libpam-modules-bin_1.5.3-7ubuntu4_arm64.deb ... 91s Unpacking libpam-modules-bin (1.5.3-7ubuntu4) over (1.5.3-7ubuntu2) ... 91s Setting up libpam-modules-bin (1.5.3-7ubuntu4) ... 92s pam_namespace.service is a disabled or a static unit not running, not starting it. 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79994 files and directories currently installed.) 92s Preparing to unpack .../libpam-modules_1.5.3-7ubuntu4_arm64.deb ... 92s Unpacking libpam-modules:arm64 (1.5.3-7ubuntu4) over (1.5.3-7ubuntu2) ... 92s Setting up libpam-modules:arm64 (1.5.3-7ubuntu4) ... 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79994 files and directories currently installed.) 92s Preparing to unpack .../init_1.67ubuntu1_arm64.deb ... 92s Unpacking init (1.67ubuntu1) over (1.66ubuntu1) ... 92s Preparing to unpack .../openssh-sftp-server_1%3a9.9p1-3ubuntu2_arm64.deb ... 92s Unpacking openssh-sftp-server (1:9.9p1-3ubuntu2) over (1:9.7p1-7ubuntu5) ... 92s Preparing to unpack .../openssh-server_1%3a9.9p1-3ubuntu2_arm64.deb ... 92s Unpacking openssh-server (1:9.9p1-3ubuntu2) over (1:9.7p1-7ubuntu5) ... 93s Preparing to unpack .../openssh-client_1%3a9.9p1-3ubuntu2_arm64.deb ... 93s Unpacking openssh-client (1:9.9p1-3ubuntu2) over (1:9.7p1-7ubuntu5) ... 93s Preparing to unpack .../libpam-runtime_1.5.3-7ubuntu4_all.deb ... 93s Unpacking libpam-runtime (1.5.3-7ubuntu4) over (1.5.3-7ubuntu2) ... 93s Setting up libpam-runtime (1.5.3-7ubuntu4) ... 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79996 files and directories currently installed.) 93s Preparing to unpack .../libsemanage-common_3.7-2build1_all.deb ... 93s Unpacking libsemanage-common (3.7-2build1) over (3.5-1build6) ... 93s Setting up libsemanage-common (3.7-2build1) ... 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79995 files and directories currently installed.) 93s Preparing to unpack .../libsemanage2_3.7-2build1_arm64.deb ... 93s Unpacking libsemanage2:arm64 (3.7-2build1) over (3.5-1build6) ... 93s Setting up libsemanage2:arm64 (3.7-2build1) ... 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79995 files and directories currently installed.) 93s Preparing to unpack .../00-distro-info_1.12_arm64.deb ... 93s Unpacking distro-info (1.12) over (1.9) ... 94s Preparing to unpack .../01-gir1.2-girepository-2.0_1.82.0-2_arm64.deb ... 94s Unpacking gir1.2-girepository-2.0:arm64 (1.82.0-2) over (1.80.1-4) ... 94s Preparing to unpack .../02-gir1.2-glib-2.0_2.82.2-3_arm64.deb ... 94s Unpacking gir1.2-glib-2.0:arm64 (2.82.2-3) over (2.82.1-0ubuntu1) ... 94s Preparing to unpack .../03-libglib2.0-0t64_2.82.2-3_arm64.deb ... 94s Unpacking libglib2.0-0t64:arm64 (2.82.2-3) over (2.82.1-0ubuntu1) ... 94s Preparing to unpack .../04-libgirepository-1.0-1_1.82.0-2_arm64.deb ... 94s Unpacking libgirepository-1.0-1:arm64 (1.82.0-2) over (1.80.1-4) ... 94s Preparing to unpack .../05-libglib2.0-data_2.82.2-3_all.deb ... 94s Unpacking libglib2.0-data (2.82.2-3) over (2.82.1-0ubuntu1) ... 94s Preparing to unpack .../06-python-apt-common_2.9.0ubuntu2_all.deb ... 94s Unpacking python-apt-common (2.9.0ubuntu2) over (2.9.0ubuntu1) ... 94s Preparing to unpack .../07-python3-apt_2.9.0ubuntu2_arm64.deb ... 94s Unpacking python3-apt (2.9.0ubuntu2) over (2.9.0ubuntu1) ... 94s Preparing to unpack .../08-python3-dbus_1.3.2-5build4_arm64.deb ... 94s Unpacking python3-dbus (1.3.2-5build4) over (1.3.2-5build3) ... 94s Preparing to unpack .../09-python3-gi_3.50.0-3build1_arm64.deb ... 94s Unpacking python3-gi (3.50.0-3build1) over (3.50.0-3) ... 95s Preparing to unpack .../10-python3-yaml_6.0.2-1build1_arm64.deb ... 95s Unpacking python3-yaml (6.0.2-1build1) over (6.0.2-1) ... 95s Preparing to unpack .../11-vim-tiny_2%3a9.1.0861-1ubuntu1_arm64.deb ... 95s Unpacking vim-tiny (2:9.1.0861-1ubuntu1) over (2:9.1.0777-1ubuntu1) ... 95s Preparing to unpack .../12-vim-common_2%3a9.1.0861-1ubuntu1_all.deb ... 95s Unpacking vim-common (2:9.1.0861-1ubuntu1) over (2:9.1.0777-1ubuntu1) ... 95s Preparing to unpack .../13-xxd_2%3a9.1.0861-1ubuntu1_arm64.deb ... 95s Unpacking xxd (2:9.1.0861-1ubuntu1) over (2:9.1.0777-1ubuntu1) ... 95s Preparing to unpack .../14-libplymouth5_24.004.60-2ubuntu4_arm64.deb ... 95s Unpacking libplymouth5:arm64 (24.004.60-2ubuntu4) over (24.004.60-1ubuntu11) ... 95s Preparing to unpack .../15-plymouth-theme-ubuntu-text_24.004.60-2ubuntu4_arm64.deb ... 95s Unpacking plymouth-theme-ubuntu-text (24.004.60-2ubuntu4) over (24.004.60-1ubuntu11) ... 95s Preparing to unpack .../16-plymouth_24.004.60-2ubuntu4_arm64.deb ... 95s Unpacking plymouth (24.004.60-2ubuntu4) over (24.004.60-1ubuntu11) ... 95s Preparing to unpack .../17-xz-utils_5.6.3-1_arm64.deb ... 95s Unpacking xz-utils (5.6.3-1) over (5.6.2-2) ... 95s Preparing to unpack .../18-bpftrace_0.21.2-2ubuntu3_arm64.deb ... 95s Unpacking bpftrace (0.21.2-2ubuntu3) over (0.21.2-2ubuntu2) ... 96s Preparing to unpack .../19-curl_8.11.0-1ubuntu2_arm64.deb ... 96s Unpacking curl (8.11.0-1ubuntu2) over (8.9.1-2ubuntu2) ... 96s Preparing to unpack .../20-libcurl4t64_8.11.0-1ubuntu2_arm64.deb ... 96s Unpacking libcurl4t64:arm64 (8.11.0-1ubuntu2) over (8.9.1-2ubuntu2) ... 96s Preparing to unpack .../21-dracut-install_105-2ubuntu2_arm64.deb ... 96s Unpacking dracut-install (105-2ubuntu2) over (105-1ubuntu1) ... 96s Preparing to unpack .../22-fwupd-signed_1.55+1.7-1_arm64.deb ... 96s Unpacking fwupd-signed (1.55+1.7-1) over (1.54+1.6-1build1) ... 96s Preparing to unpack .../23-libcurl3t64-gnutls_8.11.0-1ubuntu2_arm64.deb ... 96s Unpacking libcurl3t64-gnutls:arm64 (8.11.0-1ubuntu2) over (8.9.1-2ubuntu2) ... 96s Preparing to unpack .../24-libpolkit-agent-1-0_125-2ubuntu1_arm64.deb ... 96s Unpacking libpolkit-agent-1-0:arm64 (125-2ubuntu1) over (124-2ubuntu1) ... 96s Preparing to unpack .../25-libpolkit-gobject-1-0_125-2ubuntu1_arm64.deb ... 96s Unpacking libpolkit-gobject-1-0:arm64 (125-2ubuntu1) over (124-2ubuntu1) ... 96s Selecting previously unselected package libsgutils2-1.48:arm64. 96s Preparing to unpack .../26-libsgutils2-1.48_1.48-0ubuntu1_arm64.deb ... 96s Unpacking libsgutils2-1.48:arm64 (1.48-0ubuntu1) ... 96s Preparing to unpack .../27-linux-base_4.10.1ubuntu1_all.deb ... 96s Unpacking linux-base (4.10.1ubuntu1) over (4.5ubuntu9) ... 96s Preparing to unpack .../28-lto-disabled-list_54_all.deb ... 96s Unpacking lto-disabled-list (54) over (53) ... 96s Preparing to unpack .../29-lxd-installer_10_all.deb ... 96s Unpacking lxd-installer (10) over (9) ... 96s Preparing to unpack .../30-pinentry-curses_1.3.1-0ubuntu2_arm64.deb ... 96s Unpacking pinentry-curses (1.3.1-0ubuntu2) over (1.2.1-3ubuntu5) ... 96s Preparing to unpack .../31-python3-blinker_1.9.0-1_all.deb ... 96s Unpacking python3-blinker (1.9.0-1) over (1.8.2-1) ... 96s Preparing to unpack .../32-python3-rpds-py_0.21.0-2ubuntu1_arm64.deb ... 97s Unpacking python3-rpds-py (0.21.0-2ubuntu1) over (0.20.0-0ubuntu3) ... 97s Preparing to unpack .../33-python3-jsonschema-specifications_2023.12.1-2_all.deb ... 97s Unpacking python3-jsonschema-specifications (2023.12.1-2) over (2023.12.1-1ubuntu1) ... 97s Preparing to unpack .../34-sg3-utils_1.48-0ubuntu1_arm64.deb ... 97s Unpacking sg3-utils (1.48-0ubuntu1) over (1.46-3ubuntu5) ... 97s Preparing to unpack .../35-sg3-utils-udev_1.48-0ubuntu1_all.deb ... 97s Unpacking sg3-utils-udev (1.48-0ubuntu1) over (1.46-3ubuntu5) ... 97s Setting up pinentry-curses (1.3.1-0ubuntu2) ... 97s Setting up distro-info (1.12) ... 97s Setting up lto-disabled-list (54) ... 97s Setting up apt-utils (2.9.14ubuntu1) ... 97s Setting up linux-base (4.10.1ubuntu1) ... 97s Setting up init (1.67ubuntu1) ... 97s Setting up libcurl4t64:arm64 (8.11.0-1ubuntu2) ... 97s Setting up bpftrace (0.21.2-2ubuntu3) ... 97s Setting up openssh-client (1:9.9p1-3ubuntu2) ... 97s Setting up python3-debconf (1.5.87ubuntu1) ... 98s Setting up libcurl3t64-gnutls:arm64 (8.11.0-1ubuntu2) ... 98s Setting up fwupd-signed (1.55+1.7-1) ... 98s Setting up libsgutils2-1.48:arm64 (1.48-0ubuntu1) ... 98s Setting up python3-yaml (6.0.2-1build1) ... 98s Setting up debconf-i18n (1.5.87ubuntu1) ... 98s Setting up xxd (2:9.1.0861-1ubuntu1) ... 98s Setting up libglib2.0-0t64:arm64 (2.82.2-3) ... 98s No schema files found: doing nothing. 98s Setting up libglib2.0-data (2.82.2-3) ... 98s Setting up vim-common (2:9.1.0861-1ubuntu1) ... 98s Setting up xz-utils (5.6.3-1) ... 98s Setting up gir1.2-glib-2.0:arm64 (2.82.2-3) ... 98s Setting up lxd-installer (10) ... 99s Setting up python3-rpds-py (0.21.0-2ubuntu1) ... 99s Setting up python-apt-common (2.9.0ubuntu2) ... 99s Setting up dracut-install (105-2ubuntu2) ... 99s Setting up libplymouth5:arm64 (24.004.60-2ubuntu4) ... 99s Setting up libgirepository-1.0-1:arm64 (1.82.0-2) ... 99s Setting up curl (8.11.0-1ubuntu2) ... 99s Setting up python3-jsonschema-specifications (2023.12.1-2) ... 99s Setting up libpolkit-gobject-1-0:arm64 (125-2ubuntu1) ... 99s Setting up sg3-utils (1.48-0ubuntu1) ... 99s Setting up python3-blinker (1.9.0-1) ... 99s Setting up openssh-sftp-server (1:9.9p1-3ubuntu2) ... 99s Setting up python3-dbus (1.3.2-5build4) ... 100s Setting up openssh-server (1:9.9p1-3ubuntu2) ... 100s Installing new version of config file /etc/ssh/moduli ... 100s Replacing config file /etc/ssh/sshd_config with new version 101s Setting up plymouth (24.004.60-2ubuntu4) ... 101s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 102s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 102s Setting up python3-apt (2.9.0ubuntu2) ... 102s Setting up vim-tiny (2:9.1.0861-1ubuntu1) ... 102s Setting up sg3-utils-udev (1.48-0ubuntu1) ... 102s update-initramfs: deferring update (trigger activated) 102s Setting up gir1.2-girepository-2.0:arm64 (1.82.0-2) ... 102s Setting up python3-gi (3.50.0-3build1) ... 103s Setting up libpolkit-agent-1-0:arm64 (125-2ubuntu1) ... 103s Processing triggers for debianutils (5.21) ... 103s Processing triggers for install-info (7.1.1-1) ... 103s Processing triggers for initramfs-tools (0.142ubuntu35) ... 103s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic 103s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 126s System running in EFI mode, skipping. 126s Processing triggers for libc-bin (2.40-1ubuntu3) ... 127s Processing triggers for ufw (0.36.2-8) ... 127s Processing triggers for man-db (2.13.0-1) ... 129s Setting up plymouth-theme-ubuntu-text (24.004.60-2ubuntu4) ... 129s Processing triggers for initramfs-tools (0.142ubuntu35) ... 129s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic 129s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 149s System running in EFI mode, skipping. 150s Reading package lists... 151s Building dependency tree... 151s Reading state information... 152s The following packages will be REMOVED: 152s libsgutils2-1.46-2* 152s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. 152s After this operation, 314 kB disk space will be freed. 152s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80030 files and directories currently installed.) 152s Removing libsgutils2-1.46-2:arm64 (1.46-3ubuntu5) ... 152s Processing triggers for libc-bin (2.40-1ubuntu3) ... 154s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 154s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 154s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 154s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 155s Reading package lists... 155s Reading package lists... 156s Building dependency tree... 156s Reading state information... 157s Calculating upgrade... 157s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 158s Reading package lists... 158s Building dependency tree... 158s Reading state information... 160s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 160s autopkgtest [09:36:02]: rebooting testbed after setup commands that affected boot 164s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 186s autopkgtest [09:36:28]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 189s autopkgtest [09:36:31]: @@@@@@@@@@@@@@@@@@@@ apt-source imexam 195s Get:1 http://ftpmaster.internal/ubuntu plucky/universe imexam 0.9.1-6 (dsc) [2361 B] 195s Get:2 http://ftpmaster.internal/ubuntu plucky/universe imexam 0.9.1-6 (tar) [21.4 MB] 195s Get:3 http://ftpmaster.internal/ubuntu plucky/universe imexam 0.9.1-6 (diff) [7756 B] 195s gpgv: Signature made Tue Nov 28 09:16:30 2023 UTC 195s gpgv: using RSA key BAFC6C85F7CB143FEEB6FB157115AFD07710DCF7 195s gpgv: Can't check signature: No public key 195s dpkg-source: warning: cannot verify inline signature for ./imexam_0.9.1-6.dsc: no acceptable signature found 195s autopkgtest [09:36:37]: testing package imexam version 0.9.1-6 196s autopkgtest [09:36:38]: build not needed 197s autopkgtest [09:36:39]: test command1: preparing testbed 199s Reading package lists... 200s Building dependency tree... 200s Reading state information... 200s Starting pkgProblemResolver with broken count: 0 201s Starting 2 pkgProblemResolver with broken count: 0 201s Done 202s The following additional packages will be installed: 202s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx ipython3 202s libblas3 libdeflate0 liberfa1 libfontconfig1 libgfortran5 libgomp1 202s libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 202s libjs-jquery libjs-jquery-hotkeys libjs-jquery-isonscreen 202s libjs-jquery-metadata libjs-jquery-tablesorter 202s libjs-jquery-throttle-debounce libjs-jquery-ui libjs-sphinxdoc 202s libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 202s libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0 202s libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwcs8 libwebp7 libwebpdemux2 202s libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data 202s python3-appdirs python3-astropy python3-astropy-iers-data python3-asttokens 202s python3-brotli python3-contourpy python3-coverage python3-cycler 202s python3-dateutil python3-decorator python3-erfa python3-executing 202s python3-fonttools python3-fs python3-hypothesis python3-imexam 202s python3-iniconfig python3-ipython python3-jedi python3-kiwisolver 202s python3-lxml python3-lz4 python3-matplotlib python3-matplotlib-inline 202s python3-mpmath python3-numpy python3-packaging python3-parso python3-pexpect 202s python3-pil python3-pil.imagetk python3-pluggy python3-ply 202s python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-pytest 202s python3-pytest-arraydiff python3-pytest-astropy 202s python3-pytest-astropy-header python3-pytest-cov python3-pytest-doctestplus 202s python3-pytest-filter-subpackage python3-pytest-mock 202s python3-pytest-remotedata python3-scipy python3-six python3-sortedcontainers 202s python3-stack-data python3-sympy python3-tk python3-traitlets 202s python3-typeshed python3-tz python3-ufolib2 python3-unicodedata2 202s python3-wcwidth python3.12-tk python3.13 python3.13-minimal python3.13-tk 202s tk8.6-blt2.5 unicode-data x11-common 202s Suggested packages: 202s blt-demo libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 libxml2-utils 202s python-astropy-doc python3-astropy-affiliated python3-bs4 python3-h5py 202s python3-pandas python-coverage-doc python-cycler-doc python-hypothesis-doc 202s python-imexam-doc python-ipython-doc python-lxml-doc cm-super-minimal dvipng 202s ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape librsvg2-common 202s python-matplotlib-doc python3-cairocffi python3-gi-cairo python3-gobject 202s python3-pyqt5 python3-sip python3-tornado texlive-extra-utils 202s texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc gfortran 202s python-numpy-doc python3-dev python-pexpect-doc python-pil-doc 202s python-ply-doc python-pytest-mock-doc python-scipy-doc 202s python-sortedcontainers-doc texlive-fonts-extra python-sympy-doc tix 202s python3-tk-dbg python-traitlets-doc python3.13-venv python3.13-doc 202s binfmt-support 202s Recommended packages: 202s javascript-common libjs-jquery-datatables python3-click python3-ginga 202s | saods9 python3-ginga | xpa-tools python3-bs4 python3-cssselect 202s python3-html5lib python3-olefile g++ | c++-compiler isympy-common 202s The following NEW packages will be installed: 202s autopkgtest-satdep blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 202s fonts-lyx ipython3 libblas3 libdeflate0 liberfa1 libfontconfig1 libgfortran5 202s libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 202s libjpeg8 libjs-jquery libjs-jquery-hotkeys libjs-jquery-isonscreen 202s libjs-jquery-metadata libjs-jquery-tablesorter 202s libjs-jquery-throttle-debounce libjs-jquery-ui libjs-sphinxdoc 202s libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 202s libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0 202s libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwcs8 libwebp7 libwebpdemux2 202s libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data 202s python3-appdirs python3-astropy python3-astropy-iers-data python3-asttokens 202s python3-brotli python3-contourpy python3-coverage python3-cycler 202s python3-dateutil python3-decorator python3-erfa python3-executing 202s python3-fonttools python3-fs python3-hypothesis python3-imexam 202s python3-iniconfig python3-ipython python3-jedi python3-kiwisolver 202s python3-lxml python3-lz4 python3-matplotlib python3-matplotlib-inline 202s python3-mpmath python3-numpy python3-packaging python3-parso python3-pexpect 202s python3-pil python3-pil.imagetk python3-pluggy python3-ply 202s python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-pytest 202s python3-pytest-arraydiff python3-pytest-astropy 202s python3-pytest-astropy-header python3-pytest-cov python3-pytest-doctestplus 202s python3-pytest-filter-subpackage python3-pytest-mock 202s python3-pytest-remotedata python3-scipy python3-six python3-sortedcontainers 202s python3-stack-data python3-sympy python3-tk python3-traitlets 202s python3-typeshed python3-tz python3-ufolib2 python3-unicodedata2 202s python3-wcwidth python3.12-tk python3.13 python3.13-minimal python3.13-tk 202s tk8.6-blt2.5 unicode-data x11-common 202s 0 upgraded, 114 newly installed, 0 to remove and 0 not upgraded. 202s Need to get 75.8 MB/75.8 MB of archives. 202s After this operation, 383 MB of additional disk space will be used. 202s Get:1 /tmp/autopkgtest.dZR6ho/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [728 B] 203s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB] 203s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.0-2 [2100 kB] 203s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 203s Get:5 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB] 203s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [987 kB] 203s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 203s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 203s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB] 203s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB] 203s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 203s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 203s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 204s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 204s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.15-1 [774 kB] 204s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7build1 [618 kB] 204s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 blt arm64 2.5.3+dfsg-7build1 [4840 B] 204s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lyx all 2.4.2.1-1 [171 kB] 204s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 204s Get:20 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-parso all 0.8.4-1 [67.6 kB] 204s Get:21 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-typeshed all 0.0~git20231111.6764465-3 [1274 kB] 204s Get:22 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-jedi all 0.19.1+ds1-1 [693 kB] 204s Get:23 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 204s Get:24 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-matplotlib-inline all 0.1.6-2 [8784 B] 204s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-wcwidth all 0.2.13+dfsg1-1 [26.3 kB] 204s Get:26 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-prompt-toolkit all 3.0.48-1 [256 kB] 204s Get:27 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-asttokens all 2.4.1-2 [20.8 kB] 204s Get:28 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-executing all 2.1.0-0.1 [24.4 kB] 204s Get:29 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pure-eval all 0.2.3-1 [11.4 kB] 204s Get:30 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-stack-data all 0.6.3-1 [22.0 kB] 204s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-ptyprocess all 0.7.0-6 [14.8 kB] 204s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pexpect all 4.9-3 [48.1 kB] 204s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ipython all 8.29.0-1 [569 kB] 204s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 ipython3 all 8.29.0-1 [4938 B] 204s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-4 [152 kB] 204s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.22-1 [46.2 kB] 204s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB] 204s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB] 204s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 204s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.0.1-1 [487 kB] 204s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 204s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 204s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 204s Get:44 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-metadata all 12-4 [6582 B] 204s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [192 kB] 204s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.5 kB] 204s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 204s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 204s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 204s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-4 [2305 kB] 204s Get:51 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 204s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 204s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 204s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [2073 kB] 204s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 204s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libraqm0 arm64 0.10.1-1build1 [14.7 kB] 204s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [16.3 kB] 204s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 204s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.4.0-0.1 [192 kB] 204s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 204s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 libwcs8 arm64 8.4+ds-1 [262 kB] 204s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [12.3 kB] 204s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpmux3 arm64 1.4.0-0.1 [25.1 kB] 204s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libxslt1.1 arm64 1.1.39-0exp1ubuntu1 [167 kB] 204s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-matplotlib-data all 3.8.3-3ubuntu1 [2928 kB] 205s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-appdirs all 1.4.4-4 [10.9 kB] 205s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 205s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.2-1 [51.5 kB] 205s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 205s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB] 205s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-3 [80.2 kB] 205s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-sortedcontainers all 2.4.0-2 [27.6 kB] 205s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-hypothesis all 6.119.3-1 [329 kB] 205s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11ubuntu1 [4149 kB] 205s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest-arraydiff all 0.6.1-3 [10.2 kB] 205s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest-astropy-header all 0.2.2-2 [8620 B] 205s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.0-2 [719 kB] 205s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-coverage arm64 7.4.4+dfsg1-0ubuntu3 [150 kB] 205s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-isonscreen all 1.2.0-1.1 [3244 B] 205s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest-cov all 5.0.0-1 [21.3 kB] 205s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest-doctestplus all 1.2.1-2 [23.5 kB] 205s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest-filter-subpackage all 0.2.0-1 [6094 B] 205s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest-mock all 3.14.0-2 [11.7 kB] 205s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest-remotedata all 0.4.1-1 [8650 B] 205s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest-astropy all 0.11.0-1 [5902 B] 205s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-ply all 3.11-7 [45.4 kB] 205s Get:87 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-astropy-iers-data all 0.2024.07.22.00.34.13-1 [1198 kB] 205s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 liberfa1 arm64 2.0.1-1build1 [136 kB] 205s Get:89 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-erfa arm64 2.0.1.5+ds-1 [310 kB] 205s Get:90 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 python3-astropy arm64 7.0.0-1 [3991 kB] 205s Get:91 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-brotli arm64 1.1.0-2build3 [342 kB] 205s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-contourpy arm64 1.3.0-2build1 [220 kB] 205s Get:93 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-cycler all 0.12.1-1 [9716 B] 205s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tz all 2024.1-2 [31.4 kB] 205s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-six all 1.16.0-7 [13.1 kB] 205s Get:96 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fs all 2.4.16-4 [91.3 kB] 205s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-lxml arm64 5.3.0-1build1 [1591 kB] 205s Get:98 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-lz4 arm64 4.0.2+dfsg-1build5 [27.5 kB] 205s Get:99 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.13.1-5ubuntu1 [19.1 MB] 206s Get:100 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mpmath all 1.3.0-1 [425 kB] 206s Get:101 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sympy all 1.13.3-1 [4228 kB] 207s Get:102 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 207s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-unicodedata2 arm64 15.1.0+ds-1build2 [360 kB] 207s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 unicode-data all 15.1.0-1 [8878 kB] 208s Get:105 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fonttools arm64 4.55.0-3 [1618 kB] 208s Get:106 http://ftpmaster.internal/ubuntu plucky/main arm64 libopenjp2-7 arm64 2.5.0-2ubuntu1 [182 kB] 208s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pil arm64 10.4.0-1ubuntu2 [473 kB] 208s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-tk arm64 3.12.7-3 [115 kB] 208s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-tk arm64 3.13.0-2 [105 kB] 208s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tk arm64 3.12.7-1 [9752 B] 208s Get:111 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pil.imagetk arm64 10.4.0-1ubuntu2 [9590 B] 208s Get:112 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-kiwisolver arm64 1.4.7-2build1 [62.0 kB] 208s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-matplotlib arm64 3.8.3-3ubuntu1 [4612 kB] 208s Get:114 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-imexam arm64 0.9.1-6 [50.5 kB] 209s Fetched 75.8 MB in 6s (13.5 MB/s) 209s Selecting previously unselected package libpython3.13-minimal:arm64. 209s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80025 files and directories currently installed.) 209s Preparing to unpack .../000-libpython3.13-minimal_3.13.0-2_arm64.deb ... 209s Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ... 209s Selecting previously unselected package python3.13-minimal. 209s Preparing to unpack .../001-python3.13-minimal_3.13.0-2_arm64.deb ... 209s Unpacking python3.13-minimal (3.13.0-2) ... 209s Selecting previously unselected package libjs-jquery. 209s Preparing to unpack .../002-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 209s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 209s Selecting previously unselected package libjs-jquery-hotkeys. 209s Preparing to unpack .../003-libjs-jquery-hotkeys_0~20130707+git2d51e3a9+dfsg-2.1_all.deb ... 209s Unpacking libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... 209s Selecting previously unselected package libtcl8.6:arm64. 209s Preparing to unpack .../004-libtcl8.6_8.6.15+dfsg-2_arm64.deb ... 209s Unpacking libtcl8.6:arm64 (8.6.15+dfsg-2) ... 210s Selecting previously unselected package fonts-dejavu-mono. 210s Preparing to unpack .../005-fonts-dejavu-mono_2.37-8_all.deb ... 210s Unpacking fonts-dejavu-mono (2.37-8) ... 210s Selecting previously unselected package fonts-dejavu-core. 210s Preparing to unpack .../006-fonts-dejavu-core_2.37-8_all.deb ... 210s Unpacking fonts-dejavu-core (2.37-8) ... 210s Selecting previously unselected package fontconfig-config. 210s Preparing to unpack .../007-fontconfig-config_2.15.0-1.1ubuntu2_arm64.deb ... 210s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 210s Selecting previously unselected package libfontconfig1:arm64. 210s Preparing to unpack .../008-libfontconfig1_2.15.0-1.1ubuntu2_arm64.deb ... 210s Unpacking libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... 210s Selecting previously unselected package libxrender1:arm64. 210s Preparing to unpack .../009-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 210s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 210s Selecting previously unselected package libxft2:arm64. 210s Preparing to unpack .../010-libxft2_2.3.6-1build1_arm64.deb ... 210s Unpacking libxft2:arm64 (2.3.6-1build1) ... 210s Selecting previously unselected package x11-common. 210s Preparing to unpack .../011-x11-common_1%3a7.7+23ubuntu3_all.deb ... 210s Unpacking x11-common (1:7.7+23ubuntu3) ... 210s Selecting previously unselected package libxss1:arm64. 210s Preparing to unpack .../012-libxss1_1%3a1.2.3-1build3_arm64.deb ... 210s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 210s Selecting previously unselected package libtk8.6:arm64. 210s Preparing to unpack .../013-libtk8.6_8.6.15-1_arm64.deb ... 210s Unpacking libtk8.6:arm64 (8.6.15-1) ... 210s Selecting previously unselected package tk8.6-blt2.5. 210s Preparing to unpack .../014-tk8.6-blt2.5_2.5.3+dfsg-7build1_arm64.deb ... 210s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 210s Selecting previously unselected package blt. 211s Preparing to unpack .../015-blt_2.5.3+dfsg-7build1_arm64.deb ... 211s Unpacking blt (2.5.3+dfsg-7build1) ... 211s Selecting previously unselected package fonts-lyx. 211s Preparing to unpack .../016-fonts-lyx_2.4.2.1-1_all.deb ... 211s Unpacking fonts-lyx (2.4.2.1-1) ... 211s Selecting previously unselected package python3-decorator. 211s Preparing to unpack .../017-python3-decorator_5.1.1-5_all.deb ... 211s Unpacking python3-decorator (5.1.1-5) ... 211s Selecting previously unselected package python3-parso. 211s Preparing to unpack .../018-python3-parso_0.8.4-1_all.deb ... 211s Unpacking python3-parso (0.8.4-1) ... 211s Selecting previously unselected package python3-typeshed. 211s Preparing to unpack .../019-python3-typeshed_0.0~git20231111.6764465-3_all.deb ... 211s Unpacking python3-typeshed (0.0~git20231111.6764465-3) ... 211s Selecting previously unselected package python3-jedi. 211s Preparing to unpack .../020-python3-jedi_0.19.1+ds1-1_all.deb ... 211s Unpacking python3-jedi (0.19.1+ds1-1) ... 211s Selecting previously unselected package python3-traitlets. 211s Preparing to unpack .../021-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 211s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 211s Selecting previously unselected package python3-matplotlib-inline. 212s Preparing to unpack .../022-python3-matplotlib-inline_0.1.6-2_all.deb ... 212s Unpacking python3-matplotlib-inline (0.1.6-2) ... 212s Selecting previously unselected package python3-wcwidth. 212s Preparing to unpack .../023-python3-wcwidth_0.2.13+dfsg1-1_all.deb ... 212s Unpacking python3-wcwidth (0.2.13+dfsg1-1) ... 212s Selecting previously unselected package python3-prompt-toolkit. 212s Preparing to unpack .../024-python3-prompt-toolkit_3.0.48-1_all.deb ... 212s Unpacking python3-prompt-toolkit (3.0.48-1) ... 212s Selecting previously unselected package python3-asttokens. 212s Preparing to unpack .../025-python3-asttokens_2.4.1-2_all.deb ... 212s Unpacking python3-asttokens (2.4.1-2) ... 212s Selecting previously unselected package python3-executing. 212s Preparing to unpack .../026-python3-executing_2.1.0-0.1_all.deb ... 212s Unpacking python3-executing (2.1.0-0.1) ... 212s Selecting previously unselected package python3-pure-eval. 212s Preparing to unpack .../027-python3-pure-eval_0.2.3-1_all.deb ... 212s Unpacking python3-pure-eval (0.2.3-1) ... 212s Selecting previously unselected package python3-stack-data. 212s Preparing to unpack .../028-python3-stack-data_0.6.3-1_all.deb ... 212s Unpacking python3-stack-data (0.6.3-1) ... 212s Selecting previously unselected package python3-ptyprocess. 212s Preparing to unpack .../029-python3-ptyprocess_0.7.0-6_all.deb ... 212s Unpacking python3-ptyprocess (0.7.0-6) ... 212s Selecting previously unselected package python3-pexpect. 212s Preparing to unpack .../030-python3-pexpect_4.9-3_all.deb ... 212s Unpacking python3-pexpect (4.9-3) ... 212s Selecting previously unselected package python3-ipython. 212s Preparing to unpack .../031-python3-ipython_8.29.0-1_all.deb ... 212s Unpacking python3-ipython (8.29.0-1) ... 212s Selecting previously unselected package ipython3. 212s Preparing to unpack .../032-ipython3_8.29.0-1_all.deb ... 212s Unpacking ipython3 (8.29.0-1) ... 212s Selecting previously unselected package libblas3:arm64. 212s Preparing to unpack .../033-libblas3_3.12.0-4_arm64.deb ... 212s Unpacking libblas3:arm64 (3.12.0-4) ... 212s Selecting previously unselected package libdeflate0:arm64. 212s Preparing to unpack .../034-libdeflate0_1.22-1_arm64.deb ... 212s Unpacking libdeflate0:arm64 (1.22-1) ... 212s Selecting previously unselected package libgfortran5:arm64. 212s Preparing to unpack .../035-libgfortran5_14.2.0-8ubuntu1_arm64.deb ... 212s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ... 212s Selecting previously unselected package libgomp1:arm64. 212s Preparing to unpack .../036-libgomp1_14.2.0-8ubuntu1_arm64.deb ... 212s Unpacking libgomp1:arm64 (14.2.0-8ubuntu1) ... 212s Selecting previously unselected package libgraphite2-3:arm64. 212s Preparing to unpack .../037-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 212s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 212s Selecting previously unselected package libharfbuzz0b:arm64. 212s Preparing to unpack .../038-libharfbuzz0b_10.0.1-1_arm64.deb ... 212s Unpacking libharfbuzz0b:arm64 (10.0.1-1) ... 212s Selecting previously unselected package libimagequant0:arm64. 213s Preparing to unpack .../039-libimagequant0_2.18.0-1build1_arm64.deb ... 213s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 213s Selecting previously unselected package libjpeg-turbo8:arm64. 213s Preparing to unpack .../040-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 213s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 213s Selecting previously unselected package libjpeg8:arm64. 213s Preparing to unpack .../041-libjpeg8_8c-2ubuntu11_arm64.deb ... 213s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 213s Selecting previously unselected package libjs-jquery-metadata. 213s Preparing to unpack .../042-libjs-jquery-metadata_12-4_all.deb ... 213s Unpacking libjs-jquery-metadata (12-4) ... 213s Selecting previously unselected package libjs-jquery-tablesorter. 213s Preparing to unpack .../043-libjs-jquery-tablesorter_1%3a2.31.3+dfsg1-4_all.deb ... 213s Unpacking libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 213s Selecting previously unselected package libjs-jquery-throttle-debounce. 213s Preparing to unpack .../044-libjs-jquery-throttle-debounce_1.1+dfsg.1-2_all.deb ... 213s Unpacking libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... 213s Selecting previously unselected package libjs-jquery-ui. 213s Preparing to unpack .../045-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 213s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 213s Selecting previously unselected package libjs-underscore. 213s Preparing to unpack .../046-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 213s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 213s Selecting previously unselected package libjs-sphinxdoc. 213s Preparing to unpack .../047-libjs-sphinxdoc_7.4.7-4_all.deb ... 213s Unpacking libjs-sphinxdoc (7.4.7-4) ... 213s Selecting previously unselected package liblapack3:arm64. 213s Preparing to unpack .../048-liblapack3_3.12.0-4_arm64.deb ... 213s Unpacking liblapack3:arm64 (3.12.0-4) ... 213s Selecting previously unselected package liblbfgsb0:arm64. 213s Preparing to unpack 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(8.4+ds-1) ... 214s Selecting previously unselected package libwebpdemux2:arm64. 214s Preparing to unpack .../060-libwebpdemux2_1.4.0-0.1_arm64.deb ... 214s Unpacking libwebpdemux2:arm64 (1.4.0-0.1) ... 214s Selecting previously unselected package libwebpmux3:arm64. 214s Preparing to unpack .../061-libwebpmux3_1.4.0-0.1_arm64.deb ... 214s Unpacking libwebpmux3:arm64 (1.4.0-0.1) ... 214s Selecting previously unselected package libxslt1.1:arm64. 214s Preparing to unpack .../062-libxslt1.1_1.1.39-0exp1ubuntu1_arm64.deb ... 214s Unpacking libxslt1.1:arm64 (1.1.39-0exp1ubuntu1) ... 214s Selecting previously unselected package python-matplotlib-data. 214s Preparing to unpack .../063-python-matplotlib-data_3.8.3-3ubuntu1_all.deb ... 214s Unpacking python-matplotlib-data (3.8.3-3ubuntu1) ... 214s Selecting previously unselected package python3-appdirs. 214s Preparing to unpack .../064-python3-appdirs_1.4.4-4_all.deb ... 214s Unpacking python3-appdirs (1.4.4-4) ... 214s Selecting previously unselected package python3-iniconfig. 214s Preparing to unpack .../065-python3-iniconfig_1.1.1-2_all.deb ... 214s Unpacking python3-iniconfig (1.1.1-2) ... 214s Selecting previously unselected package python3-packaging. 214s Preparing to unpack .../066-python3-packaging_24.2-1_all.deb ... 214s Unpacking python3-packaging (24.2-1) ... 215s Selecting previously unselected package python3-pluggy. 215s Preparing to unpack .../067-python3-pluggy_1.5.0-1_all.deb ... 215s Unpacking python3-pluggy (1.5.0-1) ... 215s Selecting previously unselected package python3-pytest. 215s Preparing to unpack .../068-python3-pytest_8.3.3-1_all.deb ... 215s Unpacking python3-pytest (8.3.3-1) ... 215s Selecting previously unselected package python3-dateutil. 215s Preparing to unpack .../069-python3-dateutil_2.9.0-3_all.deb ... 215s Unpacking python3-dateutil (2.9.0-3) ... 215s Selecting previously unselected package python3-sortedcontainers. 215s Preparing to unpack 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.../080-python3-pytest-filter-subpackage_0.2.0-1_all.deb ... 215s Unpacking python3-pytest-filter-subpackage (0.2.0-1) ... 216s Selecting previously unselected package python3-pytest-mock. 216s Preparing to unpack .../081-python3-pytest-mock_3.14.0-2_all.deb ... 216s Unpacking python3-pytest-mock (3.14.0-2) ... 216s Selecting previously unselected package python3-pytest-remotedata. 216s Preparing to unpack .../082-python3-pytest-remotedata_0.4.1-1_all.deb ... 216s Unpacking python3-pytest-remotedata (0.4.1-1) ... 216s Selecting previously unselected package python3-pytest-astropy. 216s Preparing to unpack .../083-python3-pytest-astropy_0.11.0-1_all.deb ... 216s Unpacking python3-pytest-astropy (0.11.0-1) ... 216s Selecting previously unselected package python3-ply. 216s Preparing to unpack .../084-python3-ply_3.11-7_all.deb ... 216s Unpacking python3-ply (3.11-7) ... 216s Selecting previously unselected package python3-astropy-iers-data. 216s Preparing to unpack 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unselected package python3-lz4. 217s Preparing to unpack .../096-python3-lz4_4.0.2+dfsg-1build5_arm64.deb ... 217s Unpacking python3-lz4 (4.0.2+dfsg-1build5) ... 217s Selecting previously unselected package python3-scipy. 217s Preparing to unpack .../097-python3-scipy_1.13.1-5ubuntu1_arm64.deb ... 217s Unpacking python3-scipy (1.13.1-5ubuntu1) ... 218s Selecting previously unselected package python3-mpmath. 218s Preparing to unpack .../098-python3-mpmath_1.3.0-1_all.deb ... 218s Unpacking python3-mpmath (1.3.0-1) ... 218s Selecting previously unselected package python3-sympy. 218s Preparing to unpack .../099-python3-sympy_1.13.3-1_all.deb ... 218s Unpacking python3-sympy (1.13.3-1) ... 218s Selecting previously unselected package python3-ufolib2. 218s Preparing to unpack .../100-python3-ufolib2_0.16.1+dfsg1-1_all.deb ... 218s Unpacking python3-ufolib2 (0.16.1+dfsg1-1) ... 218s Selecting previously unselected package python3-unicodedata2. 218s Preparing to unpack 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python3-unicodedata2 (15.1.0+ds-1build2) ... 220s Setting up fonts-lyx (2.4.2.1-1) ... 220s Setting up python3-ply (3.11-7) ... 221s Setting up x11-common (1:7.7+23ubuntu3) ... 221s Setting up libdeflate0:arm64 (1.22-1) ... 221s Setting up libqhull-r8.0:arm64 (2020.2-6build1) ... 221s Setting up python3-sortedcontainers (2.4.0-2) ... 221s Setting up libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... 221s Setting up libgomp1:arm64 (14.2.0-8ubuntu1) ... 221s Setting up python3-astropy-iers-data (0.2024.07.22.00.34.13-1) ... 221s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 221s Setting up python3-tz (2024.1-2) ... 222s Setting up unicode-data (15.1.0-1) ... 222s Setting up python3-six (1.16.0-7) ... 222s Setting up libpython3.13-minimal:arm64 (3.13.0-2) ... 222s Setting up python3-decorator (5.1.1-5) ... 222s Setting up libblas3:arm64 (3.12.0-4) ... 222s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 222s Setting up python3-packaging (24.2-1) ... 222s Setting up python3-wcwidth (0.2.13+dfsg1-1) ... 222s Setting up python3-typeshed (0.0~git20231111.6764465-3) ... 222s Setting up python3-executing (2.1.0-0.1) ... 223s Setting up python3-brotli (1.1.0-2build3) ... 223s Setting up python3-cycler (0.12.1-1) ... 223s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 223s Setting up fonts-dejavu-mono (2.37-8) ... 223s Setting up python3-kiwisolver (1.4.7-2build1) ... 223s Setting up libtcl8.6:arm64 (8.6.15+dfsg-2) ... 223s Setting up fonts-dejavu-core (2.37-8) ... 223s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 223s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ... 223s Setting up python3-pluggy (1.5.0-1) ... 223s Setting up libwebp7:arm64 (1.4.0-0.1) ... 223s Setting up python3-traitlets (5.14.3+really5.14.3-1) ... 224s Setting up libxslt1.1:arm64 (1.1.39-0exp1ubuntu1) ... 224s Setting up libopenjp2-7:arm64 (2.5.0-2ubuntu1) ... 224s Setting up python3.13-minimal (3.13.0-2) ... 225s Setting up libharfbuzz0b:arm64 (10.0.1-1) ... 225s Setting up python3-dateutil (2.9.0-3) ... 225s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 225s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 225s Setting up python3-mpmath (1.3.0-1) ... 226s Setting up libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... 226s Setting up python-matplotlib-data (3.8.3-3ubuntu1) ... 226s Setting up libwebpmux3:arm64 (1.4.0-0.1) ... 226s Setting up python3-appdirs (1.4.4-4) ... 226s Setting up libpython3.13-stdlib:arm64 (3.13.0-2) ... 226s Setting up python3-stack-data (0.6.3-1) ... 226s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 226s Setting up python3-ptyprocess (0.7.0-6) ... 226s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 226s Setting up python3-prompt-toolkit (3.0.48-1) ... 227s Setting up python3-sympy (1.13.3-1) ... 238s Setting up liblapack3:arm64 (3.12.0-4) ... 238s update-alternatives: using 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262s autopkgtest [09:37:44]: test command1: cd $AUTOPKGTEST_TMP && MPLBACKEND=Agg python3 -m pytest --pyargs imexam 262s autopkgtest [09:37:44]: test command1: [----------------------- 265s ============================= test session starts ============================== 265s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 265s rootdir: /tmp/autopkgtest.dZR6ho/autopkgtest_tmp 265s plugins: mock-3.14.0, cov-5.0.0, remotedata-0.4.1, astropy-header-0.2.2, doctestplus-1.2.1, hypothesis-6.119.3, typeguard-4.4.1, astropy-0.11.0, arraydiff-0.6.1, filter-subpackage-0.2.0 265s collected 21 items 265s 266s tests/test_imexamine.py ..sFFxFFs [ 42%] 266s tests/test_util.py ............ [100%] 266s 266s =================================== FAILURES =================================== 266s ________________________________ test_line_fit _________________________________ 266s 266s def test_line_fit(): 266s """Fit a Gaussian1D line to the data.""" 266s plots = Imexamine() 266s in_amp = 3. 266s in_mean = 50. 266s in_stddev = 2. 266s in_const = 20. 266s 266s # Set all the lines to be Gaussians 266s line_gauss = in_const + in_amp * np.exp(-0.5 * ((xx - in_mean) / in_stddev)**2) 266s plots.set_data(line_gauss) 266s > fit = plots.line_fit(50, 50, form='Gaussian1D', genplot=False) 266s 266s /usr/lib/python3/dist-packages/imexam/tests/test_imexamine.py:86: 266s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 266s /usr/lib/python3/dist-packages/imexam/imexamine.py:765: in line_fit 266s amp, xout, yout, sigma, sigmay = self.gauss_center(xx, 266s /usr/lib/python3/dist-packages/imexam/imexamine.py:1007: in gauss_center 266s fit = math_helper.fit_gaussian_2d(chunk, sigma_factor=sigma_factor) 266s /usr/lib/python3/dist-packages/imexam/math_helper.py:254: in fit_gaussian_2d 266s results = fit(model, xx, yy, data) 266s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:303: in wrapper 266s return func(self, model, x, y, z=z, **kwargs) 266s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1434: in __call__ 266s init_values, fitparams, cov_x = self._run_fitter( 266s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1509: in _run_fitter 266s fitparams, cov_x, dinfo, mess, ierr = optimize.leastsq( 266s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:437: in leastsq 266s _check_func('leastsq', 'Dfun', Dfun, x0, args, n, (n, m)) 266s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:29: in _check_func 266s res = atleast_1d(thefunc(*((x0[:numinputs],) + args))) 266s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 266s 266s params = array([ 3., 15., 15., 3., 3., 0., 20.]) 266s model = 266s weights = 1.0 266s x = array([[ 0., 1., 2., 3., 4., 5., 6., 7., 8., 9., 10., 11., 12., 266s 13., 14., 15., 16., 17., 18., 19., 20..., 10., 11., 12., 266s 13., 14., 15., 16., 17., 18., 19., 20., 21., 22., 23., 24., 25., 266s 26., 27., 28., 29.]]) 266s y = array([[ 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 266s 0., 0., 0., 0., 0., 0., 0., 0..., 29., 29., 29., 266s 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 266s 29., 29., 29., 29.]]) 266s z = array([[20. , 20. , 20. , 20.00000005, 20.00000081, 266s 20.00001118, 20.0001202 , 20.00100639...2699, 20.00656247, 20.00100639, 20.0001202 , 266s 20.00001118, 20.00000081, 20.00000005, 20. , 20. ]]) 266s fit_param_indices = None 266s 266s @staticmethod 266s def _wrap_deriv(params, model, weights, x, y, z=None, fit_param_indices=None): 266s """ 266s Wraps the method calculating the Jacobian of the function to account 266s for model constraints. 266s `scipy.optimize.leastsq` expects the function derivative to have the 266s above signature (parlist, (argtuple)). In order to accommodate model 266s constraints, instead of using p directly, we set the parameter list in 266s this function. 266s """ 266s if weights is None: 266s weights = 1.0 266s 266s if model.has_fixed or model.has_tied: 266s # update the parameters with the current values from the fitter 266s fitter_to_model_params(model, params) 266s if z is None: 266s full = np.array(model.fit_deriv(x, *model.parameters)) 266s if not model.col_fit_deriv: 266s full_deriv = np.ravel(weights) * full.T 266s else: 266s full_deriv = np.ravel(weights) * full 266s else: 266s full = np.array( 266s [np.ravel(_) for _ in model.fit_deriv(x, y, *model.parameters)] 266s ) 266s if not model.col_fit_deriv: 266s full_deriv = np.ravel(weights) * full.T 266s else: 266s full_deriv = np.ravel(weights) * full 266s 266s pars = [getattr(model, name) for name in model.param_names] 266s fixed = [par.fixed for par in pars] 266s tied = [par.tied for par in pars] 266s tied = list(np.where([par.tied is not False for par in pars], True, tied)) 266s fix_and_tie = np.logical_or(fixed, tied) 266s ind = np.logical_not(fix_and_tie) 266s 266s if not model.col_fit_deriv: 266s residues = np.asarray(full_deriv[np.nonzero(ind)]).T 266s else: 266s residues = full_deriv[np.nonzero(ind)] 266s 266s return [np.ravel(_) for _ in residues] 266s else: 266s if z is None: 266s fit_deriv = np.array(model.fit_deriv(x, *params)) 266s try: 266s output = np.array( 266s [np.ravel(_) for _ in np.array(weights) * fit_deriv] 266s ) 266s if output.shape != fit_deriv.shape: 266s output = np.array( 266s [np.ravel(_) for _ in np.atleast_2d(weights).T * fit_deriv] 266s ) 266s return output 266s except ValueError: 266s return np.array( 266s [ 266s np.ravel(_) 266s for _ in np.array(weights) * np.moveaxis(fit_deriv, -1, 0) 266s ] 266s ).transpose() 266s else: 266s if not model.col_fit_deriv: 266s return [ 266s np.ravel(_) 266s for _ in ( 266s np.ravel(weights) 266s * np.array(model.fit_deriv(x, y, *params)).T 266s ).T 266s ] 266s return [ 266s np.ravel(_) 266s > for _ in weights * np.array(model.fit_deriv(x, y, *params)) 266s ] 266s E ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (7,) + inhomogeneous part. 266s 266s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1287: ValueError 266s ----------------------------- Captured stdout call ----------------------------- 266s using model: 266s Name: Gaussian1D 266s N_inputs: 1 266s N_outputs: 1 266s Fittable parameters: ('amplitude', 'mean', 'stddev') 266s ------------------------------ Captured log call ------------------------------- 266s INFO imexam.util:imexamine.py:749 using model: 266s Name: Gaussian1D 266s N_inputs: 1 266s N_outputs: 1 266s Fittable parameters: ('amplitude', 'mean', 'stddev') 266s _______________________________ test_column_fit ________________________________ 266s 266s def test_column_fit(): 266s """Fit a Gaussian1D column to the data.""" 266s plots = Imexamine() 266s in_amp = 3. 266s in_mean = 50. 266s in_stddev = 2. 266s in_const = 20. 266s # Set all the columns to be Gaussians 266s col_gauss = in_const + in_amp * np.exp(-0.5 * ((yy - in_mean) / in_stddev)**2) 266s plots.set_data(col_gauss) 266s > fit = plots.column_fit(50, 50, form='Gaussian1D', genplot=False) 266s 266s /usr/lib/python3/dist-packages/imexam/tests/test_imexamine.py:104: 266s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 266s /usr/lib/python3/dist-packages/imexam/imexamine.py:917: in column_fit 266s result = self.line_fit(x, y, data=data, form=form, 266s /usr/lib/python3/dist-packages/imexam/imexamine.py:765: in line_fit 266s amp, xout, yout, sigma, sigmay = self.gauss_center(xx, 266s /usr/lib/python3/dist-packages/imexam/imexamine.py:1007: in gauss_center 266s fit = math_helper.fit_gaussian_2d(chunk, sigma_factor=sigma_factor) 266s /usr/lib/python3/dist-packages/imexam/math_helper.py:254: in fit_gaussian_2d 266s results = fit(model, xx, yy, data) 266s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:303: in wrapper 266s return func(self, model, x, y, z=z, **kwargs) 266s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1434: in __call__ 266s init_values, fitparams, cov_x = self._run_fitter( 266s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1509: in _run_fitter 266s fitparams, cov_x, dinfo, mess, ierr = optimize.leastsq( 266s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:437: in leastsq 266s _check_func('leastsq', 'Dfun', Dfun, x0, args, n, (n, m)) 266s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:29: in _check_func 266s res = atleast_1d(thefunc(*((x0[:numinputs],) + args))) 266s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 266s 266s params = array([ 3., 15., 15., 3., 3., 0., 20.]) 266s model = 266s weights = 1.0 266s x = array([[ 0., 1., 2., 3., 4., 5., 6., 7., 8., 9., 10., 11., 12., 266s 13., 14., 15., 16., 17., 18., 19., 20..., 10., 11., 12., 266s 13., 14., 15., 16., 17., 18., 19., 20., 21., 22., 23., 24., 25., 266s 26., 27., 28., 29.]]) 266s y = array([[ 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 266s 0., 0., 0., 0., 0., 0., 0., 0..., 29., 29., 29., 266s 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 266s 29., 29., 29., 29.]]) 266s z = array([[20. , 20. , 20. , 20. , 20. , 266s 20. , 20. , 20. ... , 20. , 20. , 20. , 266s 20. , 20. , 20. , 20. , 20. ]]) 266s fit_param_indices = None 266s 266s @staticmethod 266s def _wrap_deriv(params, model, weights, x, y, z=None, fit_param_indices=None): 266s """ 266s Wraps the method calculating the Jacobian of the function to account 266s for model constraints. 266s `scipy.optimize.leastsq` expects the function derivative to have the 266s above signature (parlist, (argtuple)). In order to accommodate model 266s constraints, instead of using p directly, we set the parameter list in 266s this function. 266s """ 266s if weights is None: 266s weights = 1.0 266s 266s if model.has_fixed or model.has_tied: 266s # update the parameters with the current values from the fitter 266s fitter_to_model_params(model, params) 266s if z is None: 266s full = np.array(model.fit_deriv(x, *model.parameters)) 266s if not model.col_fit_deriv: 266s full_deriv = np.ravel(weights) * full.T 266s else: 266s full_deriv = np.ravel(weights) * full 266s else: 266s full = np.array( 266s [np.ravel(_) for _ in model.fit_deriv(x, y, *model.parameters)] 266s ) 266s if not model.col_fit_deriv: 266s full_deriv = np.ravel(weights) * full.T 266s else: 266s full_deriv = np.ravel(weights) * full 266s 266s pars = [getattr(model, name) for name in model.param_names] 266s fixed = [par.fixed for par in pars] 266s tied = [par.tied for par in pars] 266s tied = list(np.where([par.tied is not False for par in pars], True, tied)) 266s fix_and_tie = np.logical_or(fixed, tied) 266s ind = np.logical_not(fix_and_tie) 266s 266s if not model.col_fit_deriv: 266s residues = np.asarray(full_deriv[np.nonzero(ind)]).T 266s else: 266s residues = full_deriv[np.nonzero(ind)] 266s 266s return [np.ravel(_) for _ in residues] 266s else: 266s if z is None: 266s fit_deriv = np.array(model.fit_deriv(x, *params)) 266s try: 266s output = np.array( 266s [np.ravel(_) for _ in np.array(weights) * fit_deriv] 266s ) 266s if output.shape != fit_deriv.shape: 266s output = np.array( 266s [np.ravel(_) for _ in np.atleast_2d(weights).T * fit_deriv] 266s ) 266s return output 266s except ValueError: 266s return np.array( 266s [ 266s np.ravel(_) 266s for _ in np.array(weights) * np.moveaxis(fit_deriv, -1, 0) 266s ] 266s ).transpose() 266s else: 266s if not model.col_fit_deriv: 266s return [ 266s np.ravel(_) 266s for _ in ( 266s np.ravel(weights) 266s * np.array(model.fit_deriv(x, y, *params)).T 266s ).T 266s ] 266s return [ 266s np.ravel(_) 266s > for _ in weights * np.array(model.fit_deriv(x, y, *params)) 266s ] 266s E ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (7,) + inhomogeneous part. 266s 266s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1287: ValueError 266s ----------------------------- Captured stdout call ----------------------------- 266s using model: 266s Name: Gaussian1D 266s N_inputs: 1 266s N_outputs: 1 266s Fittable parameters: ('amplitude', 'mean', 'stddev') 266s ------------------------------ Captured log call ------------------------------- 266s INFO imexam.util:imexamine.py:749 using model: 266s Name: Gaussian1D 266s N_inputs: 1 266s N_outputs: 1 266s Fittable parameters: ('amplitude', 'mean', 'stddev') 266s _____________________________ test_radial_profile ______________________________ 266s 266s def test_radial_profile(): 266s """Test the radial profile function 266s No background subtraction 266s individual pixel results used 266s """ 266s from astropy.convolution import Gaussian2DKernel 266s data = Gaussian2DKernel(1.5, x_size=25, y_size=25) 266s xx, yy = np.meshgrid(np.arange(25), np.arange(25)) 266s x0, y0 = np.where(data.array == data.array.max()) 266s 266s rad_in = np.sqrt((xx - x0)**2 + (yy - y0)**2) 266s rad_in = rad_in.ravel() 266s flux_in = data.array.ravel() 266s 266s order = np.argsort(rad_in) 266s rad_in = rad_in[order] 266s flux_in = flux_in[order] 266s 266s plots = Imexamine() 266s plots.set_data(data.array) 266s 266s plots.radial_profile_pars['pixels'][0] = True 266s plots.radial_profile_pars['background'][0] = False 266s plots.radial_profile_pars['clip'][0] = False 266s > rad_out, flux_out = plots.radial_profile(x0, y0, genplot=False) 266s 266s /usr/lib/python3/dist-packages/imexam/tests/test_imexamine.py:160: 266s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 266s /usr/lib/python3/dist-packages/imexam/imexamine.py:1102: in radial_profile 266s amp, centerx, centery, sigmax, sigmay = self.gauss_center(xx, yy, data, delta=datasize) 266s /usr/lib/python3/dist-packages/imexam/imexamine.py:1007: in gauss_center 266s fit = math_helper.fit_gaussian_2d(chunk, sigma_factor=sigma_factor) 266s /usr/lib/python3/dist-packages/imexam/math_helper.py:254: in fit_gaussian_2d 266s results = fit(model, xx, yy, data) 266s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:303: in wrapper 266s return func(self, model, x, y, z=z, **kwargs) 266s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1434: in __call__ 266s init_values, fitparams, cov_x = self._run_fitter( 266s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1509: in _run_fitter 266s fitparams, cov_x, dinfo, mess, ierr = optimize.leastsq( 266s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:437: in leastsq 266s _check_func('leastsq', 'Dfun', Dfun, x0, args, n, (n, m)) 266s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:29: in _check_func 266s res = atleast_1d(thefunc(*((x0[:numinputs],) + args))) 266s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 266s 266s params = array([7.06778109e-02, 4.00000000e+00, 4.00000000e+00, 3.00000000e+00, 266s 3.00000000e+00, 0.00000000e+00, 5.77193322e-05]) 266s model = 266s weights = 1.0 266s x = array([[0., 1., 2., 3., 4., 5., 6., 7.], 266s [0., 1., 2., 3., 4., 5., 6., 7.], 266s [0., 1., 2., 3., 4., 5., 6., ... [0., 1., 2., 3., 4., 5., 6., 7.], 266s [0., 1., 2., 3., 4., 5., 6., 7.], 266s [0., 1., 2., 3., 4., 5., 6., 7.]]) 266s y = array([[0., 0., 0., 0., 0., 0., 0., 0.], 266s [1., 1., 1., 1., 1., 1., 1., 1.], 266s [2., 2., 2., 2., 2., 2., 2., ... [5., 5., 5., 5., 5., 5., 5., 5.], 266s [6., 6., 6., 6., 6., 6., 6., 6.], 266s [7., 7., 7., 7., 7., 7., 7., 7.]]) 266s z = array([[5.77193322e-05, 2.73457911e-04, 8.30691786e-04, 1.61796667e-03, 266s 2.02059585e-03, 1.61796667e-03, 8.3069...29556643e-03, 3.93558331e-03, 7.66546959e-03, 266s 9.57301302e-03, 7.66546959e-03, 3.93558331e-03, 1.29556643e-03]]) 266s fit_param_indices = None 266s 266s @staticmethod 266s def _wrap_deriv(params, model, weights, x, y, z=None, fit_param_indices=None): 266s """ 266s Wraps the method calculating the Jacobian of the function to account 266s for model constraints. 266s `scipy.optimize.leastsq` expects the function derivative to have the 266s above signature (parlist, (argtuple)). In order to accommodate model 266s constraints, instead of using p directly, we set the parameter list in 266s this function. 266s """ 266s if weights is None: 266s weights = 1.0 266s 266s if model.has_fixed or model.has_tied: 266s # update the parameters with the current values from the fitter 266s fitter_to_model_params(model, params) 266s if z is None: 266s full = np.array(model.fit_deriv(x, *model.parameters)) 266s if not model.col_fit_deriv: 266s full_deriv = np.ravel(weights) * full.T 266s else: 266s full_deriv = np.ravel(weights) * full 266s else: 266s full = np.array( 266s [np.ravel(_) for _ in model.fit_deriv(x, y, *model.parameters)] 266s ) 266s if not model.col_fit_deriv: 266s full_deriv = np.ravel(weights) * full.T 266s else: 266s full_deriv = np.ravel(weights) * full 266s 266s pars = [getattr(model, name) for name in model.param_names] 266s fixed = [par.fixed for par in pars] 266s tied = [par.tied for par in pars] 266s tied = list(np.where([par.tied is not False for par in pars], True, tied)) 266s fix_and_tie = np.logical_or(fixed, tied) 266s ind = np.logical_not(fix_and_tie) 266s 266s if not model.col_fit_deriv: 266s residues = np.asarray(full_deriv[np.nonzero(ind)]).T 266s else: 266s residues = full_deriv[np.nonzero(ind)] 266s 266s return [np.ravel(_) for _ in residues] 266s else: 266s if z is None: 266s fit_deriv = np.array(model.fit_deriv(x, *params)) 266s try: 266s output = np.array( 266s [np.ravel(_) for _ in np.array(weights) * fit_deriv] 266s ) 266s if output.shape != fit_deriv.shape: 266s output = np.array( 266s [np.ravel(_) for _ in np.atleast_2d(weights).T * fit_deriv] 266s ) 266s return output 266s except ValueError: 266s return np.array( 266s [ 266s np.ravel(_) 266s for _ in np.array(weights) * np.moveaxis(fit_deriv, -1, 0) 266s ] 266s ).transpose() 266s else: 266s if not model.col_fit_deriv: 266s return [ 266s np.ravel(_) 266s for _ in ( 266s np.ravel(weights) 266s * np.array(model.fit_deriv(x, y, *params)).T 266s ).T 266s ] 266s return [ 266s np.ravel(_) 266s > for _ in weights * np.array(model.fit_deriv(x, y, *params)) 266s ] 266s E ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (7,) + inhomogeneous part. 266s 266s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1287: ValueError 266s ________________________ test_radial_profile_cumulative ________________________ 266s 266s def test_radial_profile_cumulative(): 266s """Test the radial profile function 266s without background subtraction 266s with each pixel integer binned 266s """ 266s from astropy.convolution import Gaussian2DKernel 266s ksize = 25 266s data = Gaussian2DKernel(1.5, x_size=ksize, y_size=ksize) 266s xx, yy = np.meshgrid(np.arange(ksize), np.arange(ksize)) 266s x0, y0 = np.where(data.array == data.array.max()) 266s rad_in = np.sqrt((xx - x0)**2 + (yy - y0)**2) 266s 266s rad_in = rad_in.ravel() 266s flux_in = data.array.ravel() 266s 266s indices = np.argsort(rad_in) 266s rad_in = rad_in[indices] 266s flux_in = flux_in[indices] 266s 266s # now bin the radflux like we expect 266s rad_in = rad_in.astype(int) 266s flux_in = np.bincount(rad_in, flux_in) / np.bincount(rad_in) 266s rad_in = np.arange(len(flux_in)) 266s assert (data.array[x0, y0] == flux_in[0]) 266s 266s # check the binned results 266s plots = Imexamine() 266s plots.set_data(data.array) 266s plots.radial_profile_pars['pixels'][0] = False 266s plots.radial_profile_pars['background'][0] = False 266s plots.radial_profile_pars['clip'][0] = False 266s > rad_out, flux_out = plots.radial_profile(x0, y0, genplot=False) 266s 266s /usr/lib/python3/dist-packages/imexam/tests/test_imexamine.py:206: 266s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 266s /usr/lib/python3/dist-packages/imexam/imexamine.py:1102: in radial_profile 266s amp, centerx, centery, sigmax, sigmay = self.gauss_center(xx, yy, data, delta=datasize) 266s /usr/lib/python3/dist-packages/imexam/imexamine.py:1007: in gauss_center 266s fit = math_helper.fit_gaussian_2d(chunk, sigma_factor=sigma_factor) 266s /usr/lib/python3/dist-packages/imexam/math_helper.py:254: in fit_gaussian_2d 266s results = fit(model, xx, yy, data) 266s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:303: in wrapper 266s return func(self, model, x, y, z=z, **kwargs) 266s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1434: in __call__ 266s init_values, fitparams, cov_x = self._run_fitter( 266s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1509: in _run_fitter 266s fitparams, cov_x, dinfo, mess, ierr = optimize.leastsq( 266s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:437: in leastsq 266s _check_func('leastsq', 'Dfun', Dfun, x0, args, n, (n, m)) 266s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:29: in _check_func 266s res = atleast_1d(thefunc(*((x0[:numinputs],) + args))) 266s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 266s 266s params = array([7.06778109e-02, 4.00000000e+00, 4.00000000e+00, 3.00000000e+00, 266s 3.00000000e+00, 0.00000000e+00, 5.77193322e-05]) 266s model = 266s weights = 1.0 266s x = array([[0., 1., 2., 3., 4., 5., 6., 7.], 266s [0., 1., 2., 3., 4., 5., 6., 7.], 266s [0., 1., 2., 3., 4., 5., 6., ... [0., 1., 2., 3., 4., 5., 6., 7.], 266s [0., 1., 2., 3., 4., 5., 6., 7.], 266s [0., 1., 2., 3., 4., 5., 6., 7.]]) 266s y = array([[0., 0., 0., 0., 0., 0., 0., 0.], 266s [1., 1., 1., 1., 1., 1., 1., 1.], 266s [2., 2., 2., 2., 2., 2., 2., ... [5., 5., 5., 5., 5., 5., 5., 5.], 266s [6., 6., 6., 6., 6., 6., 6., 6.], 266s [7., 7., 7., 7., 7., 7., 7., 7.]]) 266s z = array([[5.77193322e-05, 2.73457911e-04, 8.30691786e-04, 1.61796667e-03, 266s 2.02059585e-03, 1.61796667e-03, 8.3069...29556643e-03, 3.93558331e-03, 7.66546959e-03, 266s 9.57301302e-03, 7.66546959e-03, 3.93558331e-03, 1.29556643e-03]]) 266s fit_param_indices = None 266s 266s @staticmethod 266s def _wrap_deriv(params, model, weights, x, y, z=None, fit_param_indices=None): 266s """ 266s Wraps the method calculating the Jacobian of the function to account 266s for model constraints. 266s `scipy.optimize.leastsq` expects the function derivative to have the 266s above signature (parlist, (argtuple)). In order to accommodate model 266s constraints, instead of using p directly, we set the parameter list in 266s this function. 266s """ 266s if weights is None: 266s weights = 1.0 266s 266s if model.has_fixed or model.has_tied: 266s # update the parameters with the current values from the fitter 266s fitter_to_model_params(model, params) 266s if z is None: 266s full = np.array(model.fit_deriv(x, *model.parameters)) 266s if not model.col_fit_deriv: 266s full_deriv = np.ravel(weights) * full.T 266s else: 266s full_deriv = np.ravel(weights) * full 266s else: 266s full = np.array( 266s [np.ravel(_) for _ in model.fit_deriv(x, y, *model.parameters)] 266s ) 266s if not model.col_fit_deriv: 266s full_deriv = np.ravel(weights) * full.T 266s else: 266s full_deriv = np.ravel(weights) * full 266s 266s pars = [getattr(model, name) for name in model.param_names] 266s fixed = [par.fixed for par in pars] 266s tied = [par.tied for par in pars] 266s tied = list(np.where([par.tied is not False for par in pars], True, tied)) 266s fix_and_tie = np.logical_or(fixed, tied) 266s ind = np.logical_not(fix_and_tie) 266s 266s if not model.col_fit_deriv: 266s residues = np.asarray(full_deriv[np.nonzero(ind)]).T 266s else: 266s residues = full_deriv[np.nonzero(ind)] 266s 266s return [np.ravel(_) for _ in residues] 266s else: 266s if z is None: 266s fit_deriv = np.array(model.fit_deriv(x, *params)) 266s try: 266s output = np.array( 266s [np.ravel(_) for _ in np.array(weights) * fit_deriv] 266s ) 266s if output.shape != fit_deriv.shape: 266s output = np.array( 266s [np.ravel(_) for _ in np.atleast_2d(weights).T * fit_deriv] 266s ) 266s return output 266s except ValueError: 266s return np.array( 266s [ 266s np.ravel(_) 266s for _ in np.array(weights) * np.moveaxis(fit_deriv, -1, 0) 266s ] 266s ).transpose() 266s else: 266s if not model.col_fit_deriv: 266s return [ 266s np.ravel(_) 266s for _ in ( 266s np.ravel(weights) 266s * np.array(model.fit_deriv(x, y, *params)).T 266s ).T 266s ] 266s return [ 266s np.ravel(_) 266s > for _ in weights * np.array(model.fit_deriv(x, y, *params)) 266s ] 266s E ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (7,) + inhomogeneous part. 266s 266s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1287: ValueError 266s =============================== warnings summary =============================== 266s ../../../usr/lib/python3/dist-packages/imexam/__init__.py:12 266s /usr/lib/python3/dist-packages/imexam/__init__.py:12: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 266s from pkg_resources import get_distribution, DistributionNotFound 266s 266s tests/test_imexamine.py::test_radial_profile 266s tests/test_imexamine.py::test_radial_profile_cumulative 266s /usr/lib/python3/dist-packages/imexam/imexamine.py:1097: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 266s xx = int(x) 266s 266s tests/test_imexamine.py::test_radial_profile 266s tests/test_imexamine.py::test_radial_profile_cumulative 266s /usr/lib/python3/dist-packages/imexam/imexamine.py:1098: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 266s yy = int(y) 266s 266s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 266s =========================== short test summary info ============================ 266s FAILED tests/test_imexamine.py::test_line_fit - ValueError: setting an array ... 266s FAILED tests/test_imexamine.py::test_column_fit - ValueError: setting an arra... 266s FAILED tests/test_imexamine.py::test_radial_profile - ValueError: setting an ... 266s FAILED tests/test_imexamine.py::test_radial_profile_cumulative - ValueError: ... 266s ======== 4 failed, 14 passed, 2 skipped, 1 xfailed, 5 warnings in 2.86s ======== 266s autopkgtest [09:37:48]: test command1: -----------------------] 267s command1 FAIL non-zero exit status 1 267s autopkgtest [09:37:49]: test command1: - - - - - - - - - - results - - - - - - - - - - 267s autopkgtest [09:37:49]: @@@@@@@@@@@@@@@@@@@@ summary 267s command1 FAIL non-zero exit status 1 279s nova [W] Skipping flock in bos03-arm64 279s Creating nova instance adt-plucky-arm64-imexam-20241126-093322-juju-7f2275-prod-proposed-migration-environment-15-55a78d0f-71c9-41bb-9351-e463f09029b6 from image adt/ubuntu-plucky-arm64-server-20241119.img (UUID 254dc414-4366-404b-b85c-a4e26b3194ad)...