0s autopkgtest [09:21:10]: starting date and time: 2024-11-13 09:21:10+0000 0s autopkgtest [09:21:10]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [09:21:10]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.992a34nb/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade hdmf --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-15.secgroup --name adt-plucky-arm64-hdmf-20241113-092110-juju-7f2275-prod-proposed-migration-environment-15-de8e3770-6499-4ce4-87f3-322dbcd71df2 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 76s autopkgtest [09:22:26]: testbed dpkg architecture: arm64 76s autopkgtest [09:22:26]: testbed apt version: 2.9.8 76s autopkgtest [09:22:26]: @@@@@@@@@@@@@@@@@@@@ test bed setup 77s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 77s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 77s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 77s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 77s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 77s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB] 77s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 77s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB] 77s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB] 78s Fetched 1793 kB in 1s (2051 kB/s) 78s Reading package lists... 80s Reading package lists... 80s Building dependency tree... 80s Reading state information... 81s Calculating upgrade... 81s The following NEW packages will be installed: 81s python3.13-gdbm 81s The following packages will be upgraded: 81s libpython3-stdlib python3 python3-gdbm python3-minimal 82s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 82s Need to get 101 kB of archives. 82s After this operation, 141 kB of additional disk space will be used. 82s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB] 82s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB] 82s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB] 82s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB] 82s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B] 82s Fetched 101 kB in 0s (270 kB/s) 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 83s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ... 83s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 83s Setting up python3-minimal (3.12.7-1) ... 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 83s Preparing to unpack .../python3_3.12.7-1_arm64.deb ... 83s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 83s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ... 83s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 83s Selecting previously unselected package python3.13-gdbm. 83s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ... 83s Unpacking python3.13-gdbm (3.13.0-2) ... 83s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ... 83s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 83s Setting up python3.13-gdbm (3.13.0-2) ... 83s Setting up libpython3-stdlib:arm64 (3.12.7-1) ... 83s Setting up python3 (3.12.7-1) ... 83s Setting up python3-gdbm:arm64 (3.12.7-1) ... 83s Processing triggers for man-db (2.12.1-3) ... 84s Reading package lists... 84s Building dependency tree... 84s Reading state information... 85s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 86s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 86s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 86s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 86s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 87s Reading package lists... 87s Reading package lists... 87s Building dependency tree... 87s Reading state information... 87s Calculating upgrade... 88s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 88s Reading package lists... 88s Building dependency tree... 88s Reading state information... 89s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 92s autopkgtest [09:22:42]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 92s autopkgtest [09:22:42]: @@@@@@@@@@@@@@@@@@@@ apt-source hdmf 95s Get:1 http://ftpmaster.internal/ubuntu plucky/universe hdmf 3.14.5-1 (dsc) [2399 B] 95s Get:2 http://ftpmaster.internal/ubuntu plucky/universe hdmf 3.14.5-1 (tar) [15.8 MB] 95s Get:3 http://ftpmaster.internal/ubuntu plucky/universe hdmf 3.14.5-1 (diff) [6460 B] 95s gpgv: Signature made Sat Nov 2 15:04:50 2024 UTC 95s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 95s gpgv: issuer "emollier@debian.org" 95s gpgv: Can't check signature: No public key 95s dpkg-source: warning: cannot verify inline signature for ./hdmf_3.14.5-1.dsc: no acceptable signature found 95s autopkgtest [09:22:45]: testing package hdmf version 3.14.5-1 96s autopkgtest [09:22:46]: build not needed 97s autopkgtest [09:22:47]: test run-unit-test: preparing testbed 105s Reading package lists... 106s Building dependency tree... 106s Reading state information... 106s Starting pkgProblemResolver with broken count: 0 106s Starting 2 pkgProblemResolver with broken count: 0 106s Done 107s The following additional packages will be installed: 107s libaec0 libblas3 libgfortran5 libhdf5-103-1t64 libhdf5-hl-100t64 liblapack3 107s liblbfgsb0 liblzf1 libpython3.13-minimal libpython3.13-stdlib libsz2 107s python3-all python3-dateutil python3-decorator python3-h5py 107s python3-h5py-serial python3-hdmf python3-numpy python3-pandas 107s python3-pandas-lib python3-ruamel.yaml python3-ruamel.yaml.clib 107s python3-scipy python3-six python3-tz python3.13 python3.13-minimal 107s Suggested packages: 107s python-h5py-doc gcc gfortran python-numpy-doc python3-dev python3-pytest 107s python-pandas-doc python3-statsmodels python-scipy-doc python3.13-venv 107s python3.13-doc binfmt-support 107s Recommended packages: 107s python3-matplotlib python3-bottleneck python3-numexpr python3-odf 107s python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables 107s g++ | c++-compiler python3-pil 107s The following NEW packages will be installed: 107s autopkgtest-satdep libaec0 libblas3 libgfortran5 libhdf5-103-1t64 107s libhdf5-hl-100t64 liblapack3 liblbfgsb0 liblzf1 libpython3.13-minimal 107s libpython3.13-stdlib libsz2 python3-all python3-dateutil python3-decorator 107s python3-h5py python3-h5py-serial python3-hdmf python3-numpy python3-pandas 107s python3-pandas-lib python3-ruamel.yaml python3-ruamel.yaml.clib 107s python3-scipy python3-six python3-tz python3.13 python3.13-minimal 107s 0 upgraded, 28 newly installed, 0 to remove and 0 not upgraded. 107s Need to get 39.2 MB/39.2 MB of archives. 107s After this operation, 174 MB of additional disk space will be used. 107s Get:1 /tmp/autopkgtest.yHSnw7/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [712 B] 107s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB] 107s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.0-2 [2100 kB] 108s Get:4 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 108s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 108s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB] 108s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 108s Get:8 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4ubuntu3 [1207 kB] 108s Get:9 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4ubuntu3 [56.9 kB] 108s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 108s Get:11 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 108s Get:12 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 108s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [2073 kB] 108s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.0-2 [719 kB] 108s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all arm64 3.12.7-1 [890 B] 108s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-six all 1.16.0-7 [13.1 kB] 108s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-2 [80.3 kB] 108s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 108s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB] 108s Get:20 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py-serial arm64 3.11.0-5ubuntu1 [1064 kB] 108s Get:21 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py all 3.11.0-5ubuntu1 [7974 B] 108s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tz all 2024.1-2 [31.4 kB] 108s Get:23 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas-lib arm64 2.2.3+dfsg-5 [4422 kB] 108s Get:24 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas all 2.2.3+dfsg-5 [3112 kB] 108s Get:25 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.13.1-5 [16.3 MB] 109s Get:26 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ruamel.yaml.clib arm64 0.2.8+ds-2 [129 kB] 109s Get:27 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ruamel.yaml all 0.18.6+ds-3 [126 kB] 109s Get:28 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-hdmf all 3.14.5-1 [235 kB] 109s Fetched 39.2 MB in 2s (18.0 MB/s) 109s Selecting previously unselected package libpython3.13-minimal:arm64. 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79931 files and directories currently installed.) 109s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_arm64.deb ... 109s Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ... 109s Selecting previously unselected package python3.13-minimal. 109s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_arm64.deb ... 109s Unpacking python3.13-minimal (3.13.0-2) ... 110s Selecting previously unselected package libaec0:arm64. 110s Preparing to unpack .../02-libaec0_1.1.3-1_arm64.deb ... 110s Unpacking libaec0:arm64 (1.1.3-1) ... 110s Selecting previously unselected package libblas3:arm64. 110s Preparing to unpack .../03-libblas3_3.12.0-3build2_arm64.deb ... 110s Unpacking libblas3:arm64 (3.12.0-3build2) ... 110s Selecting previously unselected package libgfortran5:arm64. 110s Preparing to unpack .../04-libgfortran5_14.2.0-8ubuntu1_arm64.deb ... 110s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ... 110s Selecting previously unselected package libsz2:arm64. 110s Preparing to unpack .../05-libsz2_1.1.3-1_arm64.deb ... 110s Unpacking libsz2:arm64 (1.1.3-1) ... 110s Selecting previously unselected package libhdf5-103-1t64:arm64. 110s Preparing to unpack .../06-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_arm64.deb ... 110s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 110s Selecting previously unselected package libhdf5-hl-100t64:arm64. 110s Preparing to unpack .../07-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_arm64.deb ... 110s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 110s Selecting previously unselected package liblapack3:arm64. 110s Preparing to unpack .../08-liblapack3_3.12.0-3build2_arm64.deb ... 110s Unpacking liblapack3:arm64 (3.12.0-3build2) ... 110s Selecting previously unselected package liblbfgsb0:arm64. 110s Preparing to unpack .../09-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 110s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 110s Selecting previously unselected package liblzf1:arm64. 110s Preparing to unpack .../10-liblzf1_3.6-4_arm64.deb ... 110s Unpacking liblzf1:arm64 (3.6-4) ... 110s Selecting previously unselected package libpython3.13-stdlib:arm64. 110s Preparing to unpack .../11-libpython3.13-stdlib_3.13.0-2_arm64.deb ... 110s Unpacking libpython3.13-stdlib:arm64 (3.13.0-2) ... 110s Selecting previously unselected package python3.13. 110s Preparing to unpack .../12-python3.13_3.13.0-2_arm64.deb ... 110s Unpacking python3.13 (3.13.0-2) ... 110s Selecting previously unselected package python3-all. 110s Preparing to unpack .../13-python3-all_3.12.7-1_arm64.deb ... 110s Unpacking python3-all (3.12.7-1) ... 110s Selecting previously unselected package python3-six. 110s Preparing to unpack .../14-python3-six_1.16.0-7_all.deb ... 110s Unpacking python3-six (1.16.0-7) ... 110s Selecting previously unselected package python3-dateutil. 110s Preparing to unpack .../15-python3-dateutil_2.9.0-2_all.deb ... 110s Unpacking python3-dateutil (2.9.0-2) ... 110s Selecting previously unselected package python3-decorator. 110s Preparing to unpack .../16-python3-decorator_5.1.1-5_all.deb ... 110s Unpacking python3-decorator (5.1.1-5) ... 110s Selecting previously unselected package python3-numpy. 110s Preparing to unpack .../17-python3-numpy_1%3a1.26.4+ds-11build1_arm64.deb ... 110s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 110s Selecting previously unselected package python3-h5py-serial. 110s Preparing to unpack .../18-python3-h5py-serial_3.11.0-5ubuntu1_arm64.deb ... 110s Unpacking python3-h5py-serial (3.11.0-5ubuntu1) ... 110s Selecting previously unselected package python3-h5py. 110s Preparing to unpack .../19-python3-h5py_3.11.0-5ubuntu1_all.deb ... 110s Unpacking python3-h5py (3.11.0-5ubuntu1) ... 111s Selecting previously unselected package python3-tz. 111s Preparing to unpack .../20-python3-tz_2024.1-2_all.deb ... 111s Unpacking python3-tz (2024.1-2) ... 111s Selecting previously unselected package python3-pandas-lib:arm64. 111s Preparing to unpack .../21-python3-pandas-lib_2.2.3+dfsg-5_arm64.deb ... 111s Unpacking python3-pandas-lib:arm64 (2.2.3+dfsg-5) ... 111s Selecting previously unselected package python3-pandas. 111s Preparing to unpack .../22-python3-pandas_2.2.3+dfsg-5_all.deb ... 111s Unpacking python3-pandas (2.2.3+dfsg-5) ... 111s Selecting previously unselected package python3-scipy. 111s Preparing to unpack .../23-python3-scipy_1.13.1-5_arm64.deb ... 111s Unpacking python3-scipy (1.13.1-5) ... 111s Selecting previously unselected package python3-ruamel.yaml.clib:arm64. 111s Preparing to unpack .../24-python3-ruamel.yaml.clib_0.2.8+ds-2_arm64.deb ... 111s Unpacking python3-ruamel.yaml.clib:arm64 (0.2.8+ds-2) ... 111s Selecting previously unselected package python3-ruamel.yaml. 111s Preparing to unpack .../25-python3-ruamel.yaml_0.18.6+ds-3_all.deb ... 111s Unpacking python3-ruamel.yaml (0.18.6+ds-3) ... 111s Selecting previously unselected package python3-hdmf. 111s Preparing to unpack .../26-python3-hdmf_3.14.5-1_all.deb ... 111s Unpacking python3-hdmf (3.14.5-1) ... 111s Selecting previously unselected package autopkgtest-satdep. 111s Preparing to unpack .../27-1-autopkgtest-satdep.deb ... 111s Unpacking autopkgtest-satdep (0) ... 112s Setting up python3-ruamel.yaml.clib:arm64 (0.2.8+ds-2) ... 112s Setting up libaec0:arm64 (1.1.3-1) ... 112s Setting up python3-tz (2024.1-2) ... 112s Setting up python3-six (1.16.0-7) ... 112s Setting up libpython3.13-minimal:arm64 (3.13.0-2) ... 112s Setting up python3-decorator (5.1.1-5) ... 113s Setting up libblas3:arm64 (3.12.0-3build2) ... 113s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 113s Setting up liblzf1:arm64 (3.6-4) ... 113s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ... 113s Setting up python3-ruamel.yaml (0.18.6+ds-3) ... 113s Setting up python3.13-minimal (3.13.0-2) ... 114s Setting up python3-dateutil (2.9.0-2) ... 114s Setting up libpython3.13-stdlib:arm64 (3.13.0-2) ... 114s Setting up libsz2:arm64 (1.1.3-1) ... 114s Setting up liblapack3:arm64 (3.12.0-3build2) ... 114s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 114s Setting up python3.13 (3.13.0-2) ... 115s Setting up python3-all (3.12.7-1) ... 115s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 120s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 120s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 120s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 120s Setting up python3-scipy (1.13.1-5) ... 127s Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-5) ... 127s Setting up python3-h5py-serial (3.11.0-5ubuntu1) ... 127s Setting up python3-pandas (2.2.3+dfsg-5) ... 138s Setting up python3-h5py (3.11.0-5ubuntu1) ... 139s Setting up python3-hdmf (3.14.5-1) ... 139s Setting up autopkgtest-satdep (0) ... 139s Processing triggers for systemd (256.5-2ubuntu4) ... 139s Processing triggers for man-db (2.12.1-3) ... 139s Processing triggers for libc-bin (2.40-1ubuntu3) ... 143s (Reading database ... 85145 files and directories currently installed.) 143s Removing autopkgtest-satdep (0) ... 144s autopkgtest [09:23:34]: test run-unit-test: [----------------------- 145s Testing with python3.13 in /tmp/autopkgtest.yHSnw7/autopkgtest_tmp: 145s tests.unit.back_compat_tests.test_1_1_0 (unittest.loader._FailedTest.tests.unit.back_compat_tests.test_1_1_0) ... ERROR 145s tests.unit.build_tests.mapper_tests.test_build (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build) ... ERROR 145s tests.unit.build_tests.mapper_tests.test_build_datetime (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build_datetime) ... ERROR 145s tests.unit.build_tests.mapper_tests.test_build_quantity (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build_quantity) ... ERROR 145s tests.unit.build_tests.test_builder (unittest.loader._FailedTest.tests.unit.build_tests.test_builder) ... ERROR 145s tests.unit.build_tests.test_classgenerator (unittest.loader._FailedTest.tests.unit.build_tests.test_classgenerator) ... ERROR 145s tests.unit.build_tests.test_convert_dtype (unittest.loader._FailedTest.tests.unit.build_tests.test_convert_dtype) ... ERROR 145s tests.unit.build_tests.test_io_manager (unittest.loader._FailedTest.tests.unit.build_tests.test_io_manager) ... ERROR 145s tests.unit.build_tests.test_io_map (unittest.loader._FailedTest.tests.unit.build_tests.test_io_map) ... ERROR 145s tests.unit.build_tests.test_io_map_data (unittest.loader._FailedTest.tests.unit.build_tests.test_io_map_data) ... ERROR 145s tests.unit.common.test_alignedtable (unittest.loader._FailedTest.tests.unit.common.test_alignedtable) ... ERROR 145s tests.unit.common.test_common (unittest.loader._FailedTest.tests.unit.common.test_common) ... ERROR 145s tests.unit.common.test_common_io (unittest.loader._FailedTest.tests.unit.common.test_common_io) ... ERROR 145s tests.unit.common.test_generate_table (unittest.loader._FailedTest.tests.unit.common.test_generate_table) ... ERROR 145s tests.unit.common.test_linkedtables (unittest.loader._FailedTest.tests.unit.common.test_linkedtables) ... ERROR 145s tests.unit.common.test_multi (unittest.loader._FailedTest.tests.unit.common.test_multi) ... ERROR 145s tests.unit.common.test_resources (unittest.loader._FailedTest.tests.unit.common.test_resources) ... ERROR 145s tests.unit.common.test_sparse (unittest.loader._FailedTest.tests.unit.common.test_sparse) ... ERROR 145s tests.unit.common.test_table (unittest.loader._FailedTest.tests.unit.common.test_table) ... ERROR 145s tests.unit.spec_tests.test_attribute_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_attribute_spec) ... ERROR 145s tests.unit.spec_tests.test_dataset_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_dataset_spec) ... ERROR 145s tests.unit.spec_tests.test_dtype_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_dtype_spec) ... ERROR 145s tests.unit.spec_tests.test_group_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_group_spec) ... ERROR 145s tests.unit.spec_tests.test_link_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_link_spec) ... ERROR 145s tests.unit.spec_tests.test_load_namespace (unittest.loader._FailedTest.tests.unit.spec_tests.test_load_namespace) ... ERROR 145s tests.unit.spec_tests.test_ref_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_ref_spec) ... ERROR 145s tests.unit.spec_tests.test_spec_catalog (unittest.loader._FailedTest.tests.unit.spec_tests.test_spec_catalog) ... ERROR 145s tests.unit.spec_tests.test_spec_write (unittest.loader._FailedTest.tests.unit.spec_tests.test_spec_write) ... ERROR 145s tests.unit.test_container (unittest.loader._FailedTest.tests.unit.test_container) ... ERROR 145s tests.unit.test_io_hdf5 (unittest.loader._FailedTest.tests.unit.test_io_hdf5) ... ERROR 145s tests.unit.test_io_hdf5_h5tools (unittest.loader._FailedTest.tests.unit.test_io_hdf5_h5tools) ... ERROR 145s tests.unit.test_io_hdf5_streaming (unittest.loader._FailedTest.tests.unit.test_io_hdf5_streaming) ... ERROR 145s tests.unit.test_multicontainerinterface (unittest.loader._FailedTest.tests.unit.test_multicontainerinterface) ... ERROR 145s tests.unit.test_query (unittest.loader._FailedTest.tests.unit.test_query) ... ERROR 145s tests.unit.test_table (unittest.loader._FailedTest.tests.unit.test_table) ... ERROR 145s tests.unit.test_term_set (unittest.loader._FailedTest.tests.unit.test_term_set) ... ERROR 145s tests.unit.utils_test.test_core_DataChunk (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataChunk) ... ERROR 145s tests.unit.utils_test.test_core_DataChunkIterator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataChunkIterator) ... ERROR 145s tests.unit.utils_test.test_core_DataIO (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataIO) ... ERROR 145s tests.unit.utils_test.test_core_GenericDataChunkIterator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_GenericDataChunkIterator) ... ERROR 145s tests.unit.utils_test.test_core_ShapeValidator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_ShapeValidator) ... ERROR 145s tests.unit.utils_test.test_data_utils (unittest.loader._FailedTest.tests.unit.utils_test.test_data_utils) ... ERROR 145s tests.unit.utils_test.test_docval (unittest.loader._FailedTest.tests.unit.utils_test.test_docval) ... ERROR 145s tests.unit.utils_test.test_labelleddict (unittest.loader._FailedTest.tests.unit.utils_test.test_labelleddict) ... ERROR 145s tests.unit.utils_test.test_utils (unittest.loader._FailedTest.tests.unit.utils_test.test_utils) ... ERROR 145s tests.unit.validator_tests.test_errors (unittest.loader._FailedTest.tests.unit.validator_tests.test_errors) ... ERROR 145s tests.unit.validator_tests.test_validate (unittest.loader._FailedTest.tests.unit.validator_tests.test_validate) ... ERROR 145s 145s ====================================================================== 145s ERROR: tests.unit.back_compat_tests.test_1_1_0 (unittest.loader._FailedTest.tests.unit.back_compat_tests.test_1_1_0) 145s ---------------------------------------------------------------------- 145s ImportError: Failed to import test module: tests.unit.back_compat_tests.test_1_1_0 145s Traceback (most recent call last): 145s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 145s from . import multiarray 145s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 145s from . import overrides 145s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 145s from numpy.core._multiarray_umath import ( 145s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 145s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 145s 145s During handling of the above exception, another exception occurred: 145s 145s Traceback (most recent call last): 145s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 145s from numpy.__config__ import show as show_config 145s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 145s from numpy.core._multiarray_umath import ( 145s ...<3 lines>... 145s ) 145s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 145s raise ImportError(msg) 145s ImportError: 145s 145s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 145s 145s Importing the numpy C-extensions failed. This error can happen for 145s many reasons, often due to issues with your setup or how NumPy was 145s installed. 145s 145s We have compiled some common reasons and troubleshooting tips at: 145s 145s https://numpy.org/devdocs/user/troubleshooting-importerror.html 145s 145s Please note and check the following: 145s 145s * The Python version is: Python3.13 from "/usr/bin/python3.13" 145s * The NumPy version is: "1.26.4" 145s 145s and make sure that they are the versions you expect. 145s Please carefully study the documentation linked above for further help. 145s 145s Original error was: No module named 'numpy.core._multiarray_umath' 145s 145s 145s The above exception was the direct cause of the following exception: 145s 145s Traceback (most recent call last): 145s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 145s module = self._get_module_from_name(name) 145s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 145s __import__(name) 145s ~~~~~~~~~~^^^^^^ 145s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/back_compat_tests/test_1_1_0.py", line 4, in 145s from hdmf.backends.hdf5.h5tools import HDF5IO 145s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 145s from . import query 145s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 145s import numpy as np 145s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 145s raise ImportError(msg) from e 145s ImportError: Error importing numpy: you should not try to import numpy from 145s its source directory; please exit the numpy source tree, and relaunch 145s your python interpreter from there. 145s 145s 145s ====================================================================== 145s ERROR: tests.unit.build_tests.mapper_tests.test_build (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build) 145s ---------------------------------------------------------------------- 145s ImportError: Failed to import test module: tests.unit.build_tests.mapper_tests.test_build 145s Traceback (most recent call last): 145s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 145s from . import multiarray 145s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 145s from . import overrides 145s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 145s from numpy.core._multiarray_umath import ( 145s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 145s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 145s 145s During handling of the above exception, another exception occurred: 145s 145s Traceback (most recent call last): 145s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 145s from numpy.__config__ import show as show_config 145s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 145s from numpy.core._multiarray_umath import ( 145s ...<3 lines>... 145s ) 145s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 145s raise ImportError(msg) 145s ImportError: 145s 145s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 145s 145s Importing the numpy C-extensions failed. This error can happen for 145s many reasons, often due to issues with your setup or how NumPy was 145s installed. 145s 145s We have compiled some common reasons and troubleshooting tips at: 145s 145s https://numpy.org/devdocs/user/troubleshooting-importerror.html 145s 145s Please note and check the following: 145s 145s * The Python version is: Python3.13 from "/usr/bin/python3.13" 145s * The NumPy version is: "1.26.4" 145s 145s and make sure that they are the versions you expect. 145s Please carefully study the documentation linked above for further help. 145s 145s Original error was: No module named 'numpy.core._multiarray_umath' 145s 145s 145s The above exception was the direct cause of the following exception: 145s 145s Traceback (most recent call last): 145s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 145s module = self._get_module_from_name(name) 145s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 145s __import__(name) 145s ~~~~~~~~~~^^^^^^ 145s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/build_tests/mapper_tests/test_build.py", line 3, in 145s import numpy as np 145s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 145s raise ImportError(msg) from e 145s ImportError: Error importing numpy: you should not try to import numpy from 145s its source directory; please exit the numpy source tree, and relaunch 145s your python interpreter from there. 145s 145s 145s ====================================================================== 145s ERROR: tests.unit.build_tests.mapper_tests.test_build_datetime (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build_datetime) 145s ---------------------------------------------------------------------- 145s ImportError: Failed to import test module: tests.unit.build_tests.mapper_tests.test_build_datetime 145s Traceback (most recent call last): 145s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 145s from . import multiarray 145s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 145s from . import overrides 145s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 145s from numpy.core._multiarray_umath import ( 145s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 145s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 145s 145s During handling of the above exception, another exception occurred: 145s 145s Traceback (most recent call last): 145s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 145s from numpy.__config__ import show as show_config 145s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 145s from numpy.core._multiarray_umath import ( 145s ...<3 lines>... 145s ) 145s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 145s raise ImportError(msg) 145s ImportError: 145s 145s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 145s 145s Importing the numpy C-extensions failed. This error can happen for 145s many reasons, often due to issues with your setup or how NumPy was 145s installed. 145s 145s We have compiled some common reasons and troubleshooting tips at: 145s 145s https://numpy.org/devdocs/user/troubleshooting-importerror.html 145s 145s Please note and check the following: 145s 145s * The Python version is: Python3.13 from "/usr/bin/python3.13" 145s * The NumPy version is: "1.26.4" 145s 145s and make sure that they are the versions you expect. 145s Please carefully study the documentation linked above for further help. 145s 145s Original error was: No module named 'numpy.core._multiarray_umath' 145s 145s 145s The above exception was the direct cause of the following exception: 145s 145s Traceback (most recent call last): 145s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 145s module = self._get_module_from_name(name) 145s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 145s __import__(name) 145s ~~~~~~~~~~^^^^^^ 145s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/build_tests/mapper_tests/test_build_datetime.py", line 1, in 145s from hdmf.utils import docval, getargs 145s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 145s from . import query 145s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 145s import numpy as np 145s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 145s raise ImportError(msg) from e 145s ImportError: Error importing numpy: you should not try to import numpy from 145s its source directory; please exit the numpy source tree, and relaunch 145s your python interpreter from there. 145s 145s 145s ====================================================================== 145s ERROR: tests.unit.build_tests.mapper_tests.test_build_quantity (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build_quantity) 145s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.build_tests.mapper_tests.test_build_quantity 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/build_tests/mapper_tests/test_build_quantity.py", line 1, in 146s from hdmf import Container, Data 146s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 146s from . import query 146s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.build_tests.test_builder (unittest.loader._FailedTest.tests.unit.build_tests.test_builder) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.build_tests.test_builder 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/build_tests/test_builder.py", line 1, in 146s from hdmf.build import GroupBuilder, DatasetBuilder, LinkBuilder, ReferenceBuilder, RegionBuilder 146s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 146s from . import query 146s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.build_tests.test_classgenerator (unittest.loader._FailedTest.tests.unit.build_tests.test_classgenerator) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.build_tests.test_classgenerator 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/build_tests/test_classgenerator.py", line 1, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.build_tests.test_convert_dtype (unittest.loader._FailedTest.tests.unit.build_tests.test_convert_dtype) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.build_tests.test_convert_dtype 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/build_tests/test_convert_dtype.py", line 3, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.build_tests.test_io_manager (unittest.loader._FailedTest.tests.unit.build_tests.test_io_manager) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.build_tests.test_io_manager 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/build_tests/test_io_manager.py", line 3, in 146s from hdmf.build import GroupBuilder, DatasetBuilder, ObjectMapper, BuildManager, TypeMap, ContainerConfigurationError 146s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 146s from . import query 146s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.build_tests.test_io_map (unittest.loader._FailedTest.tests.unit.build_tests.test_io_map) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.build_tests.test_io_map 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/build_tests/test_io_map.py", line 1, in 146s from hdmf.utils import StrDataset, docval, getargs 146s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 146s from . import query 146s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.build_tests.test_io_map_data (unittest.loader._FailedTest.tests.unit.build_tests.test_io_map_data) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.build_tests.test_io_map_data 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 146s from . import _debian_h5py_serial as _h5py 146s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 146s from . import _errors 146s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/build_tests/test_io_map_data.py", line 3, in 146s import h5py 146s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 146s from . import _debian_h5py_mpi as _h5py 146s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.common.test_alignedtable (unittest.loader._FailedTest.tests.unit.common.test_alignedtable) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.common.test_alignedtable 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/common/test_alignedtable.py", line 1, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.common.test_common (unittest.loader._FailedTest.tests.unit.common.test_common) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.common.test_common 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/common/test_common.py", line 1, in 146s from hdmf import Data, Container 146s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 146s from . import query 146s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.common.test_common_io (unittest.loader._FailedTest.tests.unit.common.test_common_io) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.common.test_common_io 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 146s from . import _debian_h5py_serial as _h5py 146s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 146s from . import _errors 146s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/common/test_common_io.py", line 1, in 146s from h5py import File 146s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 146s from . import _debian_h5py_mpi as _h5py 146s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.common.test_generate_table (unittest.loader._FailedTest.tests.unit.common.test_generate_table) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.common.test_generate_table 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/common/test_generate_table.py", line 1, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.common.test_linkedtables (unittest.loader._FailedTest.tests.unit.common.test_linkedtables) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.common.test_linkedtables 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/common/test_linkedtables.py", line 6, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.common.test_multi (unittest.loader._FailedTest.tests.unit.common.test_multi) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.common.test_multi 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/common/test_multi.py", line 1, in 146s from hdmf.common import SimpleMultiContainer 146s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 146s from . import query 146s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.common.test_resources (unittest.loader._FailedTest.tests.unit.common.test_resources) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.common.test_resources 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/common/test_resources.py", line 1, in 146s import pandas as pd 146s File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 19, in 146s raise ImportError( 146s "Unable to import required dependencies:\n" + "\n".join(_missing_dependencies) 146s ) 146s ImportError: Unable to import required dependencies: 146s numpy: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.common.test_sparse (unittest.loader._FailedTest.tests.unit.common.test_sparse) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.common.test_sparse 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/common/test_sparse.py", line 1, in 146s from hdmf.common import CSRMatrix 146s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 146s from . import query 146s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.common.test_table (unittest.loader._FailedTest.tests.unit.common.test_table) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.common.test_table 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 146s from . import _debian_h5py_serial as _h5py 146s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 146s from . import _errors 146s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/common/test_table.py", line 2, in 146s import h5py 146s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 146s from . import _debian_h5py_mpi as _h5py 146s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.spec_tests.test_attribute_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_attribute_spec) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.spec_tests.test_attribute_spec 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/spec_tests/test_attribute_spec.py", line 3, in 146s from hdmf.spec import AttributeSpec, RefSpec 146s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 146s from . import query 146s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.spec_tests.test_dataset_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_dataset_spec) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.spec_tests.test_dataset_spec 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/spec_tests/test_dataset_spec.py", line 3, in 146s from hdmf.spec import GroupSpec, DatasetSpec, AttributeSpec, DtypeSpec, RefSpec 146s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 146s from . import query 146s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.spec_tests.test_dtype_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_dtype_spec) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.spec_tests.test_dtype_spec 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/spec_tests/test_dtype_spec.py", line 1, in 146s from hdmf.spec import DtypeSpec, DtypeHelper, RefSpec 146s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 146s from . import query 146s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.spec_tests.test_group_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_group_spec) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.spec_tests.test_group_spec 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/spec_tests/test_group_spec.py", line 3, in 146s from hdmf.spec import GroupSpec, DatasetSpec, AttributeSpec, LinkSpec 146s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 146s from . import query 146s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.spec_tests.test_link_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_link_spec) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.spec_tests.test_link_spec 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/spec_tests/test_link_spec.py", line 3, in 146s from hdmf.spec import GroupSpec, LinkSpec 146s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 146s from . import query 146s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.spec_tests.test_load_namespace (unittest.loader._FailedTest.tests.unit.spec_tests.test_load_namespace) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.spec_tests.test_load_namespace 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/spec_tests/test_load_namespace.py", line 7, in 146s from hdmf.common import get_type_map 146s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 146s from . import query 146s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.spec_tests.test_ref_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_ref_spec) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.spec_tests.test_ref_spec 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/spec_tests/test_ref_spec.py", line 3, in 146s from hdmf.spec import RefSpec 146s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 146s from . import query 146s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.spec_tests.test_spec_catalog (unittest.loader._FailedTest.tests.unit.spec_tests.test_spec_catalog) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.spec_tests.test_spec_catalog 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/spec_tests/test_spec_catalog.py", line 3, in 146s from hdmf.spec import GroupSpec, DatasetSpec, AttributeSpec, SpecCatalog 146s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 146s from . import query 146s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.spec_tests.test_spec_write (unittest.loader._FailedTest.tests.unit.spec_tests.test_spec_write) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.spec_tests.test_spec_write 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/spec_tests/test_spec_write.py", line 4, in 146s from hdmf.spec.namespace import SpecNamespace, NamespaceCatalog 146s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 146s from . import query 146s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.test_container (unittest.loader._FailedTest.tests.unit.test_container) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.test_container 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/test_container.py", line 1, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.test_io_hdf5 (unittest.loader._FailedTest.tests.unit.test_io_hdf5) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.test_io_hdf5 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/test_io_hdf5.py", line 5, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.test_io_hdf5_h5tools (unittest.loader._FailedTest.tests.unit.test_io_hdf5_h5tools) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.test_io_hdf5_h5tools 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 146s from . import _debian_h5py_serial as _h5py 146s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 146s from . import _errors 146s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/test_io_hdf5_h5tools.py", line 12, in 146s import h5py 146s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 146s from . import _debian_h5py_mpi as _h5py 146s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.test_io_hdf5_streaming (unittest.loader._FailedTest.tests.unit.test_io_hdf5_streaming) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.test_io_hdf5_streaming 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 146s from . import _debian_h5py_serial as _h5py 146s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 146s from . import _errors 146s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/test_io_hdf5_streaming.py", line 4, in 146s import h5py 146s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 146s from . import _debian_h5py_mpi as _h5py 146s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.test_multicontainerinterface (unittest.loader._FailedTest.tests.unit.test_multicontainerinterface) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.test_multicontainerinterface 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/test_multicontainerinterface.py", line 3, in 146s from hdmf.container import Container, Data, MultiContainerInterface 146s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 146s from . import query 146s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.test_query (unittest.loader._FailedTest.tests.unit.test_query) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.test_query 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/test_query.py", line 4, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.test_table (unittest.loader._FailedTest.tests.unit.test_table) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.test_table 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/test_table.py", line 1, in 146s import pandas as pd 146s File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 19, in 146s raise ImportError( 146s "Unable to import required dependencies:\n" + "\n".join(_missing_dependencies) 146s ) 146s ImportError: Unable to import required dependencies: 146s numpy: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.test_term_set (unittest.loader._FailedTest.tests.unit.test_term_set) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.test_term_set 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/test_term_set.py", line 2, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.utils_test.test_core_DataChunk (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataChunk) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.utils_test.test_core_DataChunk 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/utils_test/test_core_DataChunk.py", line 3, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.utils_test.test_core_DataChunkIterator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataChunkIterator) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.utils_test.test_core_DataChunkIterator 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/utils_test/test_core_DataChunkIterator.py", line 1, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.utils_test.test_core_DataIO (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataIO) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.utils_test.test_core_DataIO 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/utils_test/test_core_DataIO.py", line 3, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.utils_test.test_core_GenericDataChunkIterator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_GenericDataChunkIterator) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.utils_test.test_core_GenericDataChunkIterator 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/utils_test/test_core_GenericDataChunkIterator.py", line 3, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.utils_test.test_core_ShapeValidator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_ShapeValidator) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.utils_test.test_core_ShapeValidator 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/utils_test/test_core_ShapeValidator.py", line 1, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.utils_test.test_data_utils (unittest.loader._FailedTest.tests.unit.utils_test.test_data_utils) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.utils_test.test_data_utils 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/utils_test/test_data_utils.py", line 1, in 146s from hdmf.data_utils import append_data 146s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 146s from . import query 146s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.utils_test.test_docval (unittest.loader._FailedTest.tests.unit.utils_test.test_docval) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.utils_test.test_docval 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/utils_test/test_docval.py", line 1, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.utils_test.test_labelleddict (unittest.loader._FailedTest.tests.unit.utils_test.test_labelleddict) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.utils_test.test_labelleddict 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/utils_test/test_labelleddict.py", line 1, in 146s from hdmf.testing import TestCase 146s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 146s from . import query 146s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.utils_test.test_utils (unittest.loader._FailedTest.tests.unit.utils_test.test_utils) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.utils_test.test_utils 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 146s from . import _debian_h5py_serial as _h5py 146s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 146s from . import _errors 146s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/utils_test/test_utils.py", line 3, in 146s import h5py 146s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 146s from . import _debian_h5py_mpi as _h5py 146s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.validator_tests.test_errors (unittest.loader._FailedTest.tests.unit.validator_tests.test_errors) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.validator_tests.test_errors 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/validator_tests/test_errors.py", line 3, in 146s from hdmf.validate.errors import Error 146s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 146s from . import query 146s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ====================================================================== 146s ERROR: tests.unit.validator_tests.test_validate (unittest.loader._FailedTest.tests.unit.validator_tests.test_validate) 146s ---------------------------------------------------------------------- 146s ImportError: Failed to import test module: tests.unit.validator_tests.test_validate 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 146s from . import multiarray 146s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 146s from . import overrides 146s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 146s from numpy.core._multiarray_umath import ( 146s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 146s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 146s 146s During handling of the above exception, another exception occurred: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 146s from numpy.__config__ import show as show_config 146s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 146s from numpy.core._multiarray_umath import ( 146s ...<3 lines>... 146s ) 146s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 146s raise ImportError(msg) 146s ImportError: 146s 146s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 146s 146s Importing the numpy C-extensions failed. This error can happen for 146s many reasons, often due to issues with your setup or how NumPy was 146s installed. 146s 146s We have compiled some common reasons and troubleshooting tips at: 146s 146s https://numpy.org/devdocs/user/troubleshooting-importerror.html 146s 146s Please note and check the following: 146s 146s * The Python version is: Python3.13 from "/usr/bin/python3.13" 146s * The NumPy version is: "1.26.4" 146s 146s and make sure that they are the versions you expect. 146s Please carefully study the documentation linked above for further help. 146s 146s Original error was: No module named 'numpy.core._multiarray_umath' 146s 146s 146s The above exception was the direct cause of the following exception: 146s 146s Traceback (most recent call last): 146s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 146s module = self._get_module_from_name(name) 146s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 146s __import__(name) 146s ~~~~~~~~~~^^^^^^ 146s File "/tmp/autopkgtest.yHSnw7/autopkgtest_tmp/tests/unit/validator_tests/test_validate.py", line 5, in 146s import numpy as np 146s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 146s raise ImportError(msg) from e 146s ImportError: Error importing numpy: you should not try to import numpy from 146s its source directory; please exit the numpy source tree, and relaunch 146s your python interpreter from there. 146s 146s 146s ---------------------------------------------------------------------- 146s Ran 47 tests in 0.003s 146s 146s FAILED (errors=47) 146s autopkgtest [09:23:36]: test run-unit-test: -----------------------] 148s autopkgtest [09:23:38]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 148s run-unit-test FAIL non-zero exit status 1 148s autopkgtest [09:23:38]: test autodep8-python3: preparing testbed 154s Reading package lists... 154s Building dependency tree... 154s Reading state information... 154s Starting pkgProblemResolver with broken count: 0 155s Starting 2 pkgProblemResolver with broken count: 0 155s Done 155s The following NEW packages will be installed: 155s autopkgtest-satdep 155s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 155s Need to get 0 B/712 B of archives. 155s After this operation, 0 B of additional disk space will be used. 155s Get:1 /tmp/autopkgtest.yHSnw7/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [712 B] 156s Selecting previously unselected package autopkgtest-satdep. 156s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85145 files and directories currently installed.) 156s Preparing to unpack .../2-autopkgtest-satdep.deb ... 156s Unpacking autopkgtest-satdep (0) ... 156s Setting up autopkgtest-satdep (0) ... 158s (Reading database ... 85145 files and directories currently installed.) 158s Removing autopkgtest-satdep (0) ... 159s autopkgtest [09:23:49]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import hdmf; print(hdmf)" ; done 159s autopkgtest [09:23:49]: test autodep8-python3: [----------------------- 159s Testing with python3.13: 160s Traceback (most recent call last): 160s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 160s from . import multiarray 160s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 160s from . import overrides 160s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 160s from numpy.core._multiarray_umath import ( 160s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 160s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 160s 160s During handling of the above exception, another exception occurred: 160s 160s Traceback (most recent call last): 160s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 160s from numpy.__config__ import show as show_config 160s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 160s from numpy.core._multiarray_umath import ( 160s ...<3 lines>... 160s ) 160s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 160s raise ImportError(msg) 160s ImportError: 160s 160s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 160s 160s Importing the numpy C-extensions failed. This error can happen for 160s many reasons, often due to issues with your setup or how NumPy was 160s installed. 160s 160s We have compiled some common reasons and troubleshooting tips at: 160s 160s https://numpy.org/devdocs/user/troubleshooting-importerror.html 160s 160s Please note and check the following: 160s 160s * The Python version is: Python3.13 from "/usr/bin/python3.13" 160s * The NumPy version is: "1.26.4" 160s 160s and make sure that they are the versions you expect. 160s Please carefully study the documentation linked above for further help. 160s 160s Original error was: No module named 'numpy.core._multiarray_umath' 160s 160s 160s The above exception was the direct cause of the following exception: 160s 160s Traceback (most recent call last): 160s File "", line 1, in 160s import hdmf; print(hdmf) 160s ^^^^^^^^^^^ 160s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 160s from . import query 160s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 160s import numpy as np 160s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 160s raise ImportError(msg) from e 160s ImportError: Error importing numpy: you should not try to import numpy from 160s its source directory; please exit the numpy source tree, and relaunch 160s your python interpreter from there. 160s autopkgtest [09:23:50]: test autodep8-python3: -----------------------] 160s autopkgtest [09:23:50]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 160s autodep8-python3 FAIL non-zero exit status 1 161s autopkgtest [09:23:51]: @@@@@@@@@@@@@@@@@@@@ summary 161s run-unit-test FAIL non-zero exit status 1 161s autodep8-python3 FAIL non-zero exit status 1 176s nova [W] Skipping flock in bos03-arm64 176s Creating nova instance adt-plucky-arm64-hdmf-20241113-092110-juju-7f2275-prod-proposed-migration-environment-15-de8e3770-6499-4ce4-87f3-322dbcd71df2 from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)...