0s autopkgtest [02:39:41]: starting date and time: 2025-03-16 02:39:41+0000 0s autopkgtest [02:39:41]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [02:39:41]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.74i5wi41/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:scikit-learn --apt-upgrade gudhi --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=scikit-learn/1.4.2+dfsg-8 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-4.secgroup --name adt-plucky-arm64-gudhi-20250316-012659-juju-7f2275-prod-proposed-migration-environment-20-53e6744d-5b58-40ff-bacb-0bbf63f0ab87 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 82s autopkgtest [02:41:03]: testbed dpkg architecture: arm64 82s autopkgtest [02:41:03]: testbed apt version: 2.9.33 83s autopkgtest [02:41:03]: @@@@@@@@@@@@@@@@@@@@ test bed setup 83s autopkgtest [02:41:03]: testbed release detected to be: None 83s autopkgtest [02:41:04]: updating testbed package index (apt update) 83s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 84s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 84s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 84s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 84s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.7 kB] 84s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [382 kB] 84s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [42.9 kB] 84s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [72.2 kB] 84s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1760 B] 84s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 84s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [338 kB] 84s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [13.6 kB] 84s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [16.8 kB] 84s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [436 B] 84s Fetched 1012 kB in 1s (1303 kB/s) 85s Reading package lists... 85s Reading package lists... 86s Building dependency tree... 86s Reading state information... 86s Calculating upgrade... 86s Calculating upgrade... 87s The following packages will be upgraded: 87s cron cron-daemon-common 87s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 87s Need to get 101 kB of archives. 87s After this operation, 0 B of additional disk space will be used. 87s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 cron arm64 3.0pl1-194ubuntu1 [86.6 kB] 87s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 cron-daemon-common all 3.0pl1-194ubuntu1 [14.6 kB] 88s Fetched 101 kB in 0s (299 kB/s) 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 88s Preparing to unpack .../cron_3.0pl1-194ubuntu1_arm64.deb ... 88s Unpacking cron (3.0pl1-194ubuntu1) over (3.0pl1-192ubuntu1) ... 88s Preparing to unpack .../cron-daemon-common_3.0pl1-194ubuntu1_all.deb ... 88s Unpacking cron-daemon-common (3.0pl1-194ubuntu1) over (3.0pl1-192ubuntu1) ... 88s Setting up cron-daemon-common (3.0pl1-194ubuntu1) ... 88s Setting up cron (3.0pl1-194ubuntu1) ... 89s Processing triggers for man-db (2.13.0-1) ... 90s Reading package lists... 90s Building dependency tree... 90s Reading state information... 91s Solving dependencies... 91s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 91s autopkgtest [02:41:12]: upgrading testbed (apt dist-upgrade and autopurge) 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 92s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 92s Starting 2 pkgProblemResolver with broken count: 0 92s Done 93s Entering ResolveByKeep 93s 93s Calculating upgrade... 94s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 94s Starting pkgProblemResolver with broken count: 0 95s Starting 2 pkgProblemResolver with broken count: 0 95s Done 95s Solving dependencies... 95s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 96s autopkgtest [02:41:17]: rebooting testbed after setup commands that affected boot 118s autopkgtest [02:41:39]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 121s autopkgtest [02:41:42]: @@@@@@@@@@@@@@@@@@@@ apt-source gudhi 125s Get:1 http://ftpmaster.internal/ubuntu plucky/universe gudhi 3.10.1+dfsg-3build1 (dsc) [3091 B] 125s Get:2 http://ftpmaster.internal/ubuntu plucky/universe gudhi 3.10.1+dfsg-3build1 (tar) [17.8 MB] 125s Get:3 http://ftpmaster.internal/ubuntu plucky/universe gudhi 3.10.1+dfsg-3build1 (diff) [11.9 kB] 126s gpgv: Signature made Tue Mar 4 15:47:17 2025 UTC 126s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 126s gpgv: Can't check signature: No public key 126s dpkg-source: warning: cannot verify inline signature for ./gudhi_3.10.1+dfsg-3build1.dsc: no acceptable signature found 127s autopkgtest [02:41:48]: testing package gudhi version 3.10.1+dfsg-3build1 127s autopkgtest [02:41:48]: build not needed 131s autopkgtest [02:41:52]: test python-upstream.sh: preparing testbed 131s Reading package lists... 131s Building dependency tree... 131s Reading state information... 131s Starting pkgProblemResolver with broken count: 0 131s Starting 2 pkgProblemResolver with broken count: 0 131s Done 132s The following NEW packages will be installed: 132s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libblas3 132s libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 132s libharfbuzz0b libhwloc15 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 132s libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblerc4 132s libopenjp2-7 libqhull-r8.0 libraqm0 libsharpyuv0 libtbb12 libtbbbind-2-5 132s libtbbmalloc2 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 132s libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data python3-all 132s python3-brotli python3-contourpy python3-cycler python3-dateutil 132s python3-decorator python3-eagerpy python3-fonttools python3-fs python3-gudhi 132s python3-iniconfig python3-joblib python3-kiwisolver python3-lxml python3-lz4 132s python3-matplotlib python3-mpmath python3-numpy python3-numpy-dev 132s python3-packaging python3-pil python3-pil.imagetk python3-platformdirs 132s python3-pluggy python3-pot python3-pytest python3-scipy python3-sklearn 132s python3-sklearn-lib python3-sympy python3-threadpoolctl python3-tk 132s python3-ufolib2 python3.12-tk python3.13-tk tk8.6-blt2.5 unicode-data 132s x11-common 132s 0 upgraded, 79 newly installed, 0 to remove and 0 not upgraded. 132s Need to get 78.3 MB of archives. 132s After this operation, 324 MB of additional disk space will be used. 132s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy-dev arm64 1:2.2.3+ds-5 [146 kB] 133s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 133s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 133s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 133s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:2.2.3+ds-5 [3981 kB] 133s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 133s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 133s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 133s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 133s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 133s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 133s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 133s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 133s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 133s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 133s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-8 [624 kB] 133s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 blt arm64 2.5.3+dfsg-8 [4824 B] 133s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lyx all 2.4.3-1 [171 kB] 133s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 133s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 133s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 133s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 133s Get:23 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhwloc15 arm64 2.12.0-1 [162 kB] 133s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 133s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 133s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 133s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 133s Get:28 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 133s Get:29 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 133s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 133s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 134s Get:32 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 134s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libraqm0 arm64 0.10.2-1 [14.9 kB] 134s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 134s Get:35 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtbbbind-2-5 arm64 2022.0.0-2 [15.1 kB] 134s Get:36 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtbbmalloc2 arm64 2022.0.0-2 [38.9 kB] 134s Get:37 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtbb12 arm64 2022.0.0-2 [71.3 kB] 134s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 134s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 134s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 134s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [12.5 kB] 134s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpmux3 arm64 1.5.0-0.1 [25.4 kB] 134s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libxslt1.1 arm64 1.1.39-0exp1ubuntu2 [168 kB] 134s Get:44 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-matplotlib-data all 3.8.3-7build1 [2934 kB] 134s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-all arm64 3.13.2-2 [886 B] 134s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-brotli arm64 1.1.0-2build4 [342 kB] 134s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-contourpy arm64 1.3.1-1build1 [182 kB] 134s Get:48 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-cycler all 0.12.1-1 [9716 B] 134s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-3 [80.2 kB] 134s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 134s Get:51 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-eagerpy all 0.30.0-3 [19.0 kB] 134s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-platformdirs all 4.3.6-1 [16.8 kB] 134s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fs all 2.4.16-7 [90.8 kB] 134s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-lxml arm64 5.3.1-1build1 [1258 kB] 134s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-lz4 arm64 4.4.0+dfsg-1build1 [27.1 kB] 134s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.14.1-4ubuntu2 [16.7 MB] 135s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mpmath all 1.3.0-1 [425 kB] 135s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sympy all 1.13.3-5 [4229 kB] 135s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB] 135s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 unicode-data all 15.1.0-1 [8878 kB] 135s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fonttools arm64 4.55.3-2build1 [1466 kB] 136s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-gudhi arm64 3.10.1+dfsg-3build1 [2001 kB] 136s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 136s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-joblib all 1.4.2-3 [205 kB] 136s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-kiwisolver arm64 1.4.7-3build1 [50.7 kB] 136s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libopenjp2-7 arm64 2.5.3-2 [183 kB] 136s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pil arm64 11.1.0-5build1 [463 kB] 136s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-tk arm64 3.12.9-1 [115 kB] 136s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-tk arm64 3.13.2-2 [106 kB] 136s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tk arm64 3.13.1-1 [9770 B] 136s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pil.imagetk arm64 11.1.0-5build1 [9892 B] 136s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.2-1 [51.5 kB] 136s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-matplotlib arm64 3.8.3-7build1 [17.3 MB] 136s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 136s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pot arm64 0.9.5+dfsg-1 [238 kB] 136s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.5-1 [252 kB] 136s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 136s Get:78 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 python3-sklearn-lib arm64 1.4.2+dfsg-8 [4109 kB] 137s Get:79 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 python3-sklearn all 1.4.2+dfsg-8 [2258 kB] 137s Fetched 78.3 MB in 4s (17.5 MB/s) 137s Selecting previously unselected package python3-numpy-dev:arm64. 137s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 137s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_arm64.deb ... 137s Unpacking python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 137s Selecting previously unselected package libblas3:arm64. 137s Preparing to unpack .../01-libblas3_3.12.1-2_arm64.deb ... 137s Unpacking libblas3:arm64 (3.12.1-2) ... 137s Selecting previously unselected package libgfortran5:arm64. 137s Preparing to unpack .../02-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 137s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 138s Selecting previously unselected package liblapack3:arm64. 138s Preparing to unpack .../03-liblapack3_3.12.1-2_arm64.deb ... 138s Unpacking liblapack3:arm64 (3.12.1-2) ... 138s Selecting previously unselected package python3-numpy. 138s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_arm64.deb ... 138s Unpacking python3-numpy (1:2.2.3+ds-5) ... 138s Selecting previously unselected package libtcl8.6:arm64. 138s Preparing to unpack .../05-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 138s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 138s Selecting previously unselected package fonts-dejavu-mono. 138s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 138s Unpacking fonts-dejavu-mono (2.37-8) ... 138s Selecting previously unselected package fonts-dejavu-core. 138s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 138s Unpacking fonts-dejavu-core (2.37-8) ... 138s Selecting previously unselected package fontconfig-config. 138s Preparing to unpack .../08-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 138s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 138s Selecting previously unselected package libfontconfig1:arm64. 138s Preparing to unpack .../09-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 138s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 138s Selecting previously unselected package libxrender1:arm64. 138s Preparing to unpack .../10-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 138s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 138s Selecting previously unselected package libxft2:arm64. 138s Preparing to unpack .../11-libxft2_2.3.6-1build1_arm64.deb ... 138s Unpacking libxft2:arm64 (2.3.6-1build1) ... 138s Selecting previously unselected package x11-common. 138s Preparing to unpack .../12-x11-common_1%3a7.7+23ubuntu3_all.deb ... 138s Unpacking x11-common (1:7.7+23ubuntu3) ... 138s Selecting previously unselected package libxss1:arm64. 138s Preparing to unpack .../13-libxss1_1%3a1.2.3-1build3_arm64.deb ... 138s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 138s Selecting previously unselected package libtk8.6:arm64. 138s Preparing to unpack .../14-libtk8.6_8.6.16-1_arm64.deb ... 138s Unpacking libtk8.6:arm64 (8.6.16-1) ... 138s Selecting previously unselected package tk8.6-blt2.5. 138s Preparing to unpack .../15-tk8.6-blt2.5_2.5.3+dfsg-8_arm64.deb ... 138s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 138s Selecting previously unselected package blt. 138s Preparing to unpack .../16-blt_2.5.3+dfsg-8_arm64.deb ... 138s Unpacking blt (2.5.3+dfsg-8) ... 138s Selecting previously unselected package fonts-lyx. 138s Preparing to unpack .../17-fonts-lyx_2.4.3-1_all.deb ... 138s Unpacking fonts-lyx (2.4.3-1) ... 139s Selecting previously unselected package libdeflate0:arm64. 139s Preparing to unpack .../18-libdeflate0_1.23-1_arm64.deb ... 139s Unpacking libdeflate0:arm64 (1.23-1) ... 139s Selecting previously unselected package libgomp1:arm64. 139s Preparing to unpack .../19-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 139s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 139s Selecting previously unselected package libgraphite2-3:arm64. 139s Preparing to unpack .../20-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 139s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 139s Selecting previously unselected package libharfbuzz0b:arm64. 139s Preparing to unpack .../21-libharfbuzz0b_10.2.0-1_arm64.deb ... 139s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 139s Selecting previously unselected package libhwloc15:arm64. 139s Preparing to unpack .../22-libhwloc15_2.12.0-1_arm64.deb ... 139s Unpacking libhwloc15:arm64 (2.12.0-1) ... 139s Selecting previously unselected package libimagequant0:arm64. 139s Preparing to unpack .../23-libimagequant0_2.18.0-1build1_arm64.deb ... 139s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 139s Selecting previously unselected package libjpeg-turbo8:arm64. 139s Preparing to unpack .../24-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 139s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 139s Selecting previously unselected package libjpeg8:arm64. 139s Preparing to unpack .../25-libjpeg8_8c-2ubuntu11_arm64.deb ... 139s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 139s Selecting previously unselected package libjs-jquery. 139s Preparing to unpack .../26-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 139s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 139s Selecting previously unselected package libjs-jquery-ui. 139s Preparing to unpack .../27-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 139s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 139s Selecting previously unselected package liblbfgsb0:arm64. 139s Preparing to unpack .../28-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 139s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 139s Selecting previously unselected package liblcms2-2:arm64. 139s Preparing to unpack .../29-liblcms2-2_2.16-2_arm64.deb ... 139s Unpacking liblcms2-2:arm64 (2.16-2) ... 139s Selecting previously unselected package liblerc4:arm64. 139s Preparing to unpack .../30-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 139s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 139s Selecting previously unselected package libqhull-r8.0:arm64. 139s Preparing to unpack .../31-libqhull-r8.0_2020.2-6build1_arm64.deb ... 139s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ... 139s Selecting previously unselected package libraqm0:arm64. 139s Preparing to unpack .../32-libraqm0_0.10.2-1_arm64.deb ... 139s Unpacking libraqm0:arm64 (0.10.2-1) ... 139s Selecting previously unselected package libsharpyuv0:arm64. 139s Preparing to unpack .../33-libsharpyuv0_1.5.0-0.1_arm64.deb ... 139s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 139s Selecting previously unselected package libtbbbind-2-5:arm64. 139s Preparing to unpack .../34-libtbbbind-2-5_2022.0.0-2_arm64.deb ... 139s Unpacking libtbbbind-2-5:arm64 (2022.0.0-2) ... 139s Selecting previously unselected package libtbbmalloc2:arm64. 139s Preparing to unpack .../35-libtbbmalloc2_2022.0.0-2_arm64.deb ... 139s Unpacking libtbbmalloc2:arm64 (2022.0.0-2) ... 139s Selecting previously unselected package libtbb12:arm64. 139s Preparing to unpack .../36-libtbb12_2022.0.0-2_arm64.deb ... 139s Unpacking libtbb12:arm64 (2022.0.0-2) ... 139s Selecting previously unselected package libjbig0:arm64. 139s Preparing to unpack .../37-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 139s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 139s Selecting previously unselected package libwebp7:arm64. 139s Preparing to unpack .../38-libwebp7_1.5.0-0.1_arm64.deb ... 139s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 139s Selecting previously unselected package libtiff6:arm64. 139s Preparing to unpack .../39-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 139s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 139s Selecting previously unselected package libwebpdemux2:arm64. 139s Preparing to unpack .../40-libwebpdemux2_1.5.0-0.1_arm64.deb ... 139s Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... 139s Selecting previously unselected package libwebpmux3:arm64. 139s Preparing to unpack .../41-libwebpmux3_1.5.0-0.1_arm64.deb ... 139s Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... 139s Selecting previously unselected package libxslt1.1:arm64. 139s Preparing to unpack .../42-libxslt1.1_1.1.39-0exp1ubuntu2_arm64.deb ... 139s Unpacking libxslt1.1:arm64 (1.1.39-0exp1ubuntu2) ... 139s Selecting previously unselected package python-matplotlib-data. 139s Preparing to unpack .../43-python-matplotlib-data_3.8.3-7build1_all.deb ... 139s Unpacking python-matplotlib-data (3.8.3-7build1) ... 140s Selecting previously unselected package python3-all. 140s Preparing to unpack .../44-python3-all_3.13.2-2_arm64.deb ... 140s Unpacking python3-all (3.13.2-2) ... 140s Selecting previously unselected package python3-brotli. 140s Preparing to unpack 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python3.12-tk. 141s Preparing to unpack .../67-python3.12-tk_3.12.9-1_arm64.deb ... 141s Unpacking python3.12-tk (3.12.9-1) ... 141s Selecting previously unselected package python3.13-tk. 141s Preparing to unpack .../68-python3.13-tk_3.13.2-2_arm64.deb ... 141s Unpacking python3.13-tk (3.13.2-2) ... 141s Selecting previously unselected package python3-tk:arm64. 141s Preparing to unpack .../69-python3-tk_3.13.1-1_arm64.deb ... 141s Unpacking python3-tk:arm64 (3.13.1-1) ... 141s Selecting previously unselected package python3-pil.imagetk:arm64. 141s Preparing to unpack .../70-python3-pil.imagetk_11.1.0-5build1_arm64.deb ... 141s Unpacking python3-pil.imagetk:arm64 (11.1.0-5build1) ... 141s Selecting previously unselected package python3-packaging. 141s Preparing to unpack .../71-python3-packaging_24.2-1_all.deb ... 141s Unpacking python3-packaging (24.2-1) ... 142s Selecting previously unselected package python3-matplotlib. 142s Preparing to unpack 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python3-sklearn-lib:arm64 (1.4.2+dfsg-8) ... 142s Selecting previously unselected package python3-sklearn. 142s Preparing to unpack .../78-python3-sklearn_1.4.2+dfsg-8_all.deb ... 142s Unpacking python3-sklearn (1.4.2+dfsg-8) ... 143s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 143s Setting up liblcms2-2:arm64 (2.16-2) ... 143s Setting up python3-iniconfig (1.1.1-2) ... 143s Setting up libtbbmalloc2:arm64 (2022.0.0-2) ... 143s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 143s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 143s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 143s Setting up python3-joblib (1.4.2-3) ... 143s Setting up python3-lz4 (4.4.0+dfsg-1build1) ... 143s Setting up fonts-lyx (2.4.3-1) ... 143s Setting up python3-threadpoolctl (3.1.0-1) ... 143s Setting up x11-common (1:7.7+23ubuntu3) ... 144s Setting up libdeflate0:arm64 (1.23-1) ... 144s Setting up libqhull-r8.0:arm64 (2020.2-6build1) ... 144s Setting up python3-all (3.13.2-2) ... 144s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 144s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 144s Setting up python3-platformdirs (4.3.6-1) ... 144s Setting up python3-fs (2.4.16-7) ... 144s Setting up unicode-data (15.1.0-1) ... 144s Setting up python3-decorator (5.1.1-5) ... 144s Setting up libblas3:arm64 (3.12.1-2) ... 144s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 144s Setting up python3-packaging (24.2-1) ... 144s Setting up python3-brotli (1.1.0-2build4) ... 144s Setting up python3-cycler (0.12.1-1) ... 144s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 144s Setting up fonts-dejavu-mono (2.37-8) ... 144s Setting up python3-kiwisolver (1.4.7-3build1) ... 145s Setting up libhwloc15:arm64 (2.12.0-1) ... 145s Setting up python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 145s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... 145s Setting up fonts-dejavu-core (2.37-8) ... 145s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 145s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ... 145s Setting up python3-pluggy (1.5.0-1) ... 145s Setting up libwebp7:arm64 (1.5.0-0.1) ... 145s Setting up libxslt1.1:arm64 (1.1.39-0exp1ubuntu2) ... 145s Setting up libopenjp2-7:arm64 (2.5.3-2) ... 145s Setting up libharfbuzz0b:arm64 (10.2.0-1) ... 145s Setting up python3-dateutil (2.9.0-3) ... 145s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 145s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 145s Setting up python3-mpmath (1.3.0-1) ... 145s Setting up python-matplotlib-data (3.8.3-7build1) ... 145s Setting up libwebpmux3:arm64 (1.5.0-0.1) ... 145s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 145s Setting up python3-sympy (1.13.3-5) ... 151s Setting up liblapack3:arm64 (3.12.1-2) ... 151s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 151s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 152s Setting up python3-pytest (8.3.5-1) ... 152s Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... 152s Setting up libtbbbind-2-5:arm64 (2022.0.0-2) ... 152s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 152s Setting up libraqm0:arm64 (0.10.2-1) ... 152s Setting up python3-numpy (1:2.2.3+ds-5) ... 154s Setting up python3-lxml:arm64 (5.3.1-1build1) ... 154s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 154s Setting up python3-contourpy (1.3.1-1build1) ... 154s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 154s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 154s Setting up libxft2:arm64 (2.3.6-1build1) ... 154s Setting up python3-scipy (1.14.1-4ubuntu2) ... 157s Setting up python3-pot (0.9.5+dfsg-1) ... 157s /usr/lib/python3/dist-packages/ot/unbalanced/_lbfgs.py:38: SyntaxWarning: invalid escape sequence '\m' 157s If None, then use :math:`\mathbf{c} = \mathbf{a} \mathbf{b}^T`. 157s Setting up libtk8.6:arm64 (8.6.16-1) ... 157s Setting up python3.12-tk (3.12.9-1) ... 157s Setting up python3-sklearn-lib:arm64 (1.4.2+dfsg-8) ... 157s Setting up libtbb12:arm64 (2022.0.0-2) ... 157s Setting up python3.13-tk (3.13.2-2) ... 158s Setting up python3-pil:arm64 (11.1.0-5build1) ... 158s Setting up python3-eagerpy (0.30.0-3) ... 158s Setting up python3-sklearn (1.4.2+dfsg-8) ... 160s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 160s Setting up blt (2.5.3+dfsg-8) ... 160s Setting up python3-tk:arm64 (3.13.1-1) ... 160s Setting up python3-gudhi (3.10.1+dfsg-3build1) ... 160s Setting up python3-pil.imagetk:arm64 (11.1.0-5build1) ... 160s Setting up python3-fonttools (4.55.3-2build1) ... 161s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... 161s Setting up python3-matplotlib (3.8.3-7build1) ... 163s Processing triggers for libc-bin (2.41-1ubuntu1) ... 163s Processing triggers for man-db (2.13.0-1) ... 164s autopkgtest [02:42:25]: test python-upstream.sh: [----------------------- 165s Running tests with Python 3.13. 167s Blacklist: ['test_knn.py', 'test_representations.py', 'test_wasserstein_distance.py::test_wasserstein_distance_grad', 'test_remote_datasets.py'] 167s Ignorelist: ['test_diff.py', 'test_dtm.py', 'test_perslay.py', 'test_wasserstein_with_tensors.py'] 167s ============================= test session starts ============================== 167s platform linux -- Python 3.13.2, pytest-8.3.5, pluggy-1.5.0 167s rootdir: /tmp/autopkgtest.TmVsyq/autopkgtest_tmp 167s plugins: typeguard-4.4.2 167s collected 158 items / 31 deselected / 127 selected 167s 167s test/test_alpha_complex.py ............. [ 10%] 167s test/test_betti_curve_representations.py .... [ 13%] 167s test/test_bottleneck_distance.py . [ 14%] 167s test/test_collapse_edges.py .. [ 15%] 167s test/test_cover_complex.py ....... [ 21%] 167s test/test_cubical_complex.py .................. [ 35%] 167s test/test_datasets_generators.py .. [ 37%] 167s test/test_dtm_rips_complex.py ... [ 39%] 167s test/test_euclidean_witness_complex.py .... [ 42%] 167s test/test_off.py .... [ 45%] 168s test/test_persistence_graphical_tools.py ...... [ 50%] 168s test/test_reader_utils.py ...... [ 55%] 168s test/test_representations_preprocessing.py . [ 55%] 168s test/test_rips_complex.py ....... [ 61%] 168s test/test_simplex_generators.py ... [ 63%] 168s test/test_simplex_tree.py .................... [ 79%] 168s test/test_simplex_tree_serialization.py .. [ 81%] 168s test/test_sklearn_cubical_persistence.py ... [ 83%] 169s test/test_sklearn_rips_persistence.py .... [ 86%] 169s test/test_subsampling.py ..... [ 90%] 169s test/test_tangential_complex.py . [ 91%] 169s test/test_time_delay.py . [ 92%] 169s test/test_tomato.py .. [ 93%] 170s test/test_wasserstein_barycenter.py . [ 94%] 170s test/test_weighted_rips_complex.py .... [ 97%] 170s test/test_witness_complex.py ... [100%] 170s 170s =============================== warnings summary =============================== 170s test/test_persistence_graphical_tools.py::test_limit_plot_persistence 170s /usr/lib/python3/dist-packages/gudhi/persistence_graphical_tools.py:107: UserWarning: usetex mode requires TeX. 170s warnings.warn("usetex mode requires TeX.") 170s 170s test/test_wasserstein_barycenter.py::test_lagrangian_barycenter 170s /usr/lib/python3/dist-packages/gudhi/wasserstein/barycenter.py:61: UserWarning: Computing barycenter of empty diag set. Returns None. 170s warnings.warn("Computing barycenter of empty diag set. Returns None.") 170s 170s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 170s ================ 127 passed, 31 deselected, 2 warnings in 4.50s ================ 170s ********** 170s autopkgtest [02:42:31]: test python-upstream.sh: -----------------------] 171s python-upstream.sh PASS 171s autopkgtest [02:42:32]: test python-upstream.sh: - - - - - - - - - - results - - - - - - - - - - 171s autopkgtest [02:42:32]: @@@@@@@@@@@@@@@@@@@@ summary 171s python-upstream.sh PASS 189s nova [W] Using flock in prodstack6-arm64 189s Creating nova instance adt-plucky-arm64-gudhi-20250316-012659-juju-7f2275-prod-proposed-migration-environment-20-53e6744d-5b58-40ff-bacb-0bbf63f0ab87 from image adt/ubuntu-plucky-arm64-server-20250316.img (UUID 08b37ce2-d71b-4e08-a72e-06f281931f28)... 189s nova [W] Timed out waiting for 7a7c460c-e30f-4d91-a020-815dceee6741 to get deleted.