0s autopkgtest [08:36:46]: starting date and time: 2024-11-15 08:36:46+0000
  0s autopkgtest [08:36:46]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [08:36:46]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.rlxhn9vq/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:gudhi --apt-upgrade gudhi --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=gudhi/3.10.1+dfsg-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-8.secgroup --name adt-plucky-arm64-gudhi-20241115-083646-juju-7f2275-prod-proposed-migration-environment-20-ad596efe-82bf-4fbd-8e45-997ab91fcf71 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 60s autopkgtest [08:37:46]: testbed dpkg architecture: arm64
 61s autopkgtest [08:37:47]: testbed apt version: 2.9.8
 61s autopkgtest [08:37:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 62s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
 62s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [95.8 kB]
 62s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.1 kB]
 62s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
 62s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1060 kB]
 62s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [170 kB]
 62s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB]
 62s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [802 kB]
 62s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [6680 B]
 63s Fetched 2282 kB in 1s (2295 kB/s)
 63s Reading package lists...
 66s Reading package lists...
 66s Building dependency tree...
 66s Reading state information...
 67s Calculating upgrade...
 68s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 68s Reading package lists...
 68s Building dependency tree...
 68s Reading state information...
 69s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 70s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
 70s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
 70s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 70s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
 71s Reading package lists...
 71s Reading package lists...
 72s Building dependency tree...
 72s Reading state information...
 73s Calculating upgrade...
 73s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 73s Reading package lists...
 74s Building dependency tree...
 74s Reading state information...
 75s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 78s autopkgtest [08:38:04]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024
 78s autopkgtest [08:38:04]: @@@@@@@@@@@@@@@@@@@@ apt-source gudhi
 82s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/universe gudhi 3.10.1+dfsg-2build1 (dsc) [3091 B]
 82s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe gudhi 3.10.1+dfsg-2build1 (tar) [17.8 MB]
 82s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe gudhi 3.10.1+dfsg-2build1 (diff) [11.8 kB]
 83s gpgv: Signature made Fri Nov 15 03:39:28 2024 UTC
 83s gpgv:                using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37
 83s gpgv: Can't check signature: No public key
 83s dpkg-source: warning: cannot verify inline signature for ./gudhi_3.10.1+dfsg-2build1.dsc: no acceptable signature found
 84s autopkgtest [08:38:10]: testing package gudhi version 3.10.1+dfsg-2build1
 85s autopkgtest [08:38:11]: build not needed
 88s autopkgtest [08:38:14]: test python-upstream.sh: preparing testbed
 90s Reading package lists...
 90s Building dependency tree...
 90s Reading state information...
 91s Starting pkgProblemResolver with broken count: 0
 91s Starting 2 pkgProblemResolver with broken count: 0
 91s Done
 92s The following additional packages will be installed:
 92s   blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libblas3
 92s   libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3
 92s   libharfbuzz0b libhwloc15 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8
 92s   libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblerc4
 92s   libopenjp2-7 libqhull-r8.0 libraqm0 libsharpyuv0 libtbb12 libtbbbind-2-5
 92s   libtbbmalloc2 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3
 92s   libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data python3-all
 92s   python3-appdirs python3-brotli python3-contourpy python3-cycler
 92s   python3-dateutil python3-decorator python3-eagerpy python3-fonttools
 93s   python3-fs python3-gudhi python3-iniconfig python3-joblib python3-kiwisolver
 93s   python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-numpy
 93s   python3-packaging python3-pil python3-pil.imagetk python3-pluggy python3-pot
 93s   python3-pytest python3-scipy python3-six python3-sklearn python3-sklearn-lib
 93s   python3-sympy python3-threadpoolctl python3-tk python3-tz python3-ufolib2
 93s   python3.12-tk tk8.6-blt2.5 unicode-data x11-common
 93s Suggested packages:
 93s   blt-demo libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 python-cycler-doc
 93s   python3-torch python-joblib-doc python-lxml-doc cm-super-minimal dvipng
 93s   ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3
 93s   librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi-cairo
 93s   python3-gobject python3-pyqt5 python3-sip python3-tornado
 93s   texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc
 93s   gfortran python-numpy-doc python3-dev python-pil-doc python-scipy-doc
 93s   python3-dap python-sklearn-doc texlive-fonts-extra python-sympy-doc tix
 93s   python3-tk-dbg python3.13-tk
 93s Recommended packages:
 93s   libhwloc-plugins javascript-common python3-simplejson python3-psutil
 93s   python3-bs4 python3-cssselect python3-html5lib python3-olefile g++
 93s   | c++-compiler isympy-common
 93s The following NEW packages will be installed:
 93s   autopkgtest-satdep blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono
 93s   fonts-lyx libblas3 libdeflate0 libfontconfig1 libgfortran5 libgomp1
 93s   libgraphite2-3 libharfbuzz0b libhwloc15 libimagequant0 libjbig0
 93s   libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0
 93s   liblcms2-2 liblerc4 libopenjp2-7 libqhull-r8.0 libraqm0 libsharpyuv0
 93s   libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtiff6 libtk8.6 libwebp7
 93s   libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1
 93s   python-matplotlib-data python3-all python3-appdirs python3-brotli
 93s   python3-contourpy python3-cycler python3-dateutil python3-decorator
 93s   python3-eagerpy python3-fonttools python3-fs python3-gudhi python3-iniconfig
 93s   python3-joblib python3-kiwisolver python3-lxml python3-lz4
 93s   python3-matplotlib python3-mpmath python3-numpy python3-packaging
 93s   python3-pil python3-pil.imagetk python3-pluggy python3-pot python3-pytest
 93s   python3-scipy python3-six python3-sklearn python3-sklearn-lib python3-sympy
 93s   python3-threadpoolctl python3-tk python3-tz python3-ufolib2 python3.12-tk
 93s   tk8.6-blt2.5 unicode-data x11-common
 93s 0 upgraded, 80 newly installed, 0 to remove and 0 not upgraded.
 93s Need to get 64.8 MB/64.8 MB of archives.
 93s After this operation, 290 MB of additional disk space will be used.
 93s Get:1 /tmp/autopkgtest.D4k3F4/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [756 B]
 93s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [987 kB]
 93s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
 93s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
 93s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB]
 93s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB]
 93s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB]
 93s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB]
 93s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
 93s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B]
 93s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.15-1 [774 kB]
 93s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7build1 [618 kB]
 93s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 blt arm64 2.5.3+dfsg-7build1 [4840 B]
 93s Get:14 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lyx all 2.4.2.1-1 [171 kB]
 93s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB]
 93s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.22-1 [46.2 kB]
 93s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB]
 93s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB]
 93s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB]
 93s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.0.1-1 [487 kB]
 93s Get:21 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhwloc15 arm64 2.11.2-1 [162 kB]
 93s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB]
 93s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu2 [163 kB]
 93s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
 93s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
 93s Get:26 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
 93s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB]
 94s Get:28 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB]
 94s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB]
 94s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu2 [154 kB]
 94s Get:31 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB]
 94s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libraqm0 arm64 0.10.1-1build1 [14.7 kB]
 94s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [16.3 kB]
 94s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtbbmalloc2 arm64 2021.12.0-1ubuntu2 [38.5 kB]
 94s Get:35 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtbbbind-2-5 arm64 2021.12.0-1ubuntu2 [14.9 kB]
 94s Get:36 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtbb12 arm64 2021.12.0-1ubuntu2 [68.1 kB]
 94s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB]
 94s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.4.0-0.1 [192 kB]
 94s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB]
 94s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [12.3 kB]
 94s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpmux3 arm64 1.4.0-0.1 [25.1 kB]
 94s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libxslt1.1 arm64 1.1.39-0exp1ubuntu1 [167 kB]
 94s Get:43 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-matplotlib-data all 3.8.3-3 [2928 kB]
 94s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-all arm64 3.12.6-0ubuntu1 [886 B]
 94s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-appdirs all 1.4.4-4 [10.9 kB]
 94s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-brotli arm64 1.1.0-2build2 [340 kB]
 94s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB]
 94s Get:48 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-contourpy arm64 1.3.0-2 [179 kB]
 94s Get:49 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-cycler all 0.12.1-1 [9716 B]
 94s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-six all 1.16.0-7 [13.1 kB]
 94s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-2 [80.3 kB]
 94s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB]
 94s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-eagerpy all 0.30.0-3 [19.0 kB]
 94s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.13.1-5 [16.3 MB]
 94s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB]
 94s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mpmath all 1.3.0-1 [425 kB]
 94s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sympy all 1.13.3-1 [4228 kB]
 94s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tz all 2024.1-2 [31.4 kB]
 94s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fs all 2.4.16-4 [91.3 kB]
 94s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-lxml arm64 5.3.0-1 [1205 kB]
 95s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-lz4 arm64 4.0.2+dfsg-1build4 [26.7 kB]
 95s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 unicode-data all 15.1.0-1 [8878 kB]
 95s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fonttools arm64 4.46.0-1build2 [1398 kB]
 95s Get:64 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 python3-gudhi arm64 3.10.1+dfsg-2build1 [2735 kB]
 95s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B]
 95s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-joblib all 1.3.2-5 [206 kB]
 95s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-kiwisolver arm64 1.4.7-2build1 [62.0 kB]
 95s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libopenjp2-7 arm64 2.5.0-2ubuntu1 [182 kB]
 95s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pil arm64 10.4.0-1ubuntu1 [456 kB]
 95s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-tk arm64 3.12.7-3 [115 kB]
 95s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tk arm64 3.12.6-1ubuntu1 [9806 B]
 95s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pil.imagetk arm64 10.4.0-1ubuntu1 [9504 B]
 95s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.1-1 [41.4 kB]
 95s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-matplotlib arm64 3.8.3-3 [4515 kB]
 95s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB]
 95s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pot arm64 0.9.4+dfsg-1 [219 kB]
 95s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB]
 95s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-threadpoolctl all 3.1.0-1 [21.3 kB]
 95s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sklearn-lib arm64 1.4.2+dfsg-6 [3806 kB]
 95s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sklearn all 1.4.2+dfsg-6 [2257 kB]
 96s Fetched 64.8 MB in 3s (24.9 MB/s)
 96s Selecting previously unselected package libtcl8.6:arm64.
 96s (Reading database ... 
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(Reading database ... 79957 files and directories currently installed.)
 96s Preparing to unpack .../00-libtcl8.6_8.6.15+dfsg-2_arm64.deb ...
 96s Unpacking libtcl8.6:arm64 (8.6.15+dfsg-2) ...
 96s Selecting previously unselected package fonts-dejavu-mono.
 96s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ...
 96s Unpacking fonts-dejavu-mono (2.37-8) ...
 96s Selecting previously unselected package fonts-dejavu-core.
 96s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ...
 96s Unpacking fonts-dejavu-core (2.37-8) ...
 96s Selecting previously unselected package fontconfig-config.
 96s Preparing to unpack .../03-fontconfig-config_2.15.0-1.1ubuntu2_arm64.deb ...
 97s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ...
 97s Selecting previously unselected package libfontconfig1:arm64.
 97s Preparing to unpack .../04-libfontconfig1_2.15.0-1.1ubuntu2_arm64.deb ...
 97s Unpacking libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ...
 97s Selecting previously unselected package libxrender1:arm64.
 97s Preparing to unpack .../05-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ...
 97s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ...
 97s Selecting previously unselected package libxft2:arm64.
 97s Preparing to unpack .../06-libxft2_2.3.6-1build1_arm64.deb ...
 97s Unpacking libxft2:arm64 (2.3.6-1build1) ...
 97s Selecting previously unselected package x11-common.
 97s Preparing to unpack .../07-x11-common_1%3a7.7+23ubuntu3_all.deb ...
 97s Unpacking x11-common (1:7.7+23ubuntu3) ...
 97s Selecting previously unselected package libxss1:arm64.
 97s Preparing to unpack .../08-libxss1_1%3a1.2.3-1build3_arm64.deb ...
 97s Unpacking libxss1:arm64 (1:1.2.3-1build3) ...
 97s Selecting previously unselected package libtk8.6:arm64.
 97s Preparing to unpack .../09-libtk8.6_8.6.15-1_arm64.deb ...
 97s Unpacking libtk8.6:arm64 (8.6.15-1) ...
 97s Selecting previously unselected package tk8.6-blt2.5.
 97s Preparing to unpack .../10-tk8.6-blt2.5_2.5.3+dfsg-7build1_arm64.deb ...
 97s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ...
 97s Selecting previously unselected package blt.
 97s Preparing to unpack .../11-blt_2.5.3+dfsg-7build1_arm64.deb ...
 97s Unpacking blt (2.5.3+dfsg-7build1) ...
 97s Selecting previously unselected package fonts-lyx.
 97s Preparing to unpack .../12-fonts-lyx_2.4.2.1-1_all.deb ...
 97s Unpacking fonts-lyx (2.4.2.1-1) ...
 97s Selecting previously unselected package libblas3:arm64.
 97s Preparing to unpack .../13-libblas3_3.12.0-3build2_arm64.deb ...
 97s Unpacking libblas3:arm64 (3.12.0-3build2) ...
 97s Selecting previously unselected package libdeflate0:arm64.
 97s Preparing to unpack .../14-libdeflate0_1.22-1_arm64.deb ...
 97s Unpacking libdeflate0:arm64 (1.22-1) ...
 97s Selecting previously unselected package libgfortran5:arm64.
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129s Setting up autopkgtest-satdep (0) ...
129s Processing triggers for libc-bin (2.40-1ubuntu3) ...
129s Processing triggers for man-db (2.13.0-1) ...
137s (Reading database ... 88315 files and directories currently installed.)
137s Removing autopkgtest-satdep (0) ...
138s autopkgtest [08:39:04]: test python-upstream.sh: [-----------------------
138s Running tests with Python 3.12.
142s Blacklist: ['test_knn.py', 'test_representations.py', 'test_wasserstein_distance.py::test_wasserstein_distance_grad', 'test_remote_datasets.py']
142s Ignorelist: ['test_diff.py', 'test_dtm.py', 'test_perslay.py', 'test_wasserstein_with_tensors.py']
142s ============================= test session starts ==============================
142s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0
142s rootdir: /tmp/autopkgtest.D4k3F4/autopkgtest_tmp
142s plugins: typeguard-4.4.1
142s collected 165 items / 31 deselected / 134 selected
142s 
142s test/test_alpha_complex.py .............                                 [  9%]
142s test/test_betti_curve_representations.py ....                            [ 12%]
142s test/test_bottleneck_distance.py .                                       [ 13%]
142s test/test_collapse_edges.py ..                                           [ 14%]
142s test/test_cover_complex.py .......                                       [ 20%]
142s test/test_cubical_complex.py ..................                          [ 33%]
142s test/test_datasets_generators.py ..                                      [ 35%]
142s test/test_dtm_rips_complex.py ...                                        [ 37%]
142s test/test_euclidean_witness_complex.py ....                              [ 40%]
142s test/test_off.py ....                                                    [ 43%]
142s test/test_persistence_graphical_tools.py ......                          [ 47%]
142s test/test_reader_utils.py ......                                         [ 52%]
142s test/test_representations_preprocessing.py .                             [ 52%]
142s test/test_rips_complex.py .......                                        [ 58%]
142s test/test_simplex_generators.py ...                                      [ 60%]
142s test/test_simplex_tree.py ....................                           [ 75%]
142s test/test_simplex_tree_serialization.py ..                               [ 76%]
142s test/test_sklearn_cubical_persistence.py ...                             [ 79%]
144s test/test_sklearn_rips_persistence.py ....                               [ 82%]
144s test/test_subsampling.py .....                                           [ 85%]
144s test/test_tangential_complex.py .                                        [ 86%]
144s test/test_time_delay.py .                                                [ 87%]
144s test/test_tomato.py ..                                                   [ 88%]
144s test/test_wasserstein_barycenter.py .                                    [ 89%]
144s test/test_wasserstein_distance.py ......Fatal Python error: Aborted
144s 
144s Current thread 0x0000f7de269bb740 (most recent call first):
144s   File "/tmp/autopkgtest.D4k3F4/autopkgtest_tmp/test/test_wasserstein_distance.py", line 191 in fun
144s   File "/tmp/autopkgtest.D4k3F4/autopkgtest_tmp/test/test_wasserstein_distance.py", line 181 in _basic_wasserstein
144s   File "/tmp/autopkgtest.D4k3F4/autopkgtest_tmp/test/test_wasserstein_distance.py", line 207 in test_wasserstein_distance_hera
144s   File "/usr/lib/python3/dist-packages/_pytest/python.py", line 159 in pytest_pyfunc_call
144s   File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in _multicall
144s   File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec
144s   File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
144s   File "/usr/lib/python3/dist-packages/_pytest/python.py", line 1627 in runtest
144s   File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 174 in pytest_runtest_call
144s   File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in _multicall
144s   File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec
144s   File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
144s   File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 242 in <lambda>
144s   File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 341 in from_call
144s   File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 241 in call_and_report
144s   File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 132 in runtestprotocol
144s   File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 113 in pytest_runtest_protocol
144s   File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in _multicall
144s   File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec
144s   File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
144s   File "/usr/lib/python3/dist-packages/_pytest/main.py", line 362 in pytest_runtestloop
144s   File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in _multicall
144s   File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec
144s   File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
144s   File "/usr/lib/python3/dist-packages/_pytest/main.py", line 337 in _main
144s   File "/usr/lib/python3/dist-packages/_pytest/main.py", line 283 in wrap_session
144s   File "/usr/lib/python3/dist-packages/_pytest/main.py", line 330 in pytest_cmdline_main
144s   File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in _multicall
144s   File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec
144s   File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
144s   File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 175 in main
144s   File "/tmp/autopkgtest.D4k3F4/autopkgtest_tmp/upstream.py", line 27 in <module>
144s 
144s Extension modules: numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, gudhi.off_utils, gudhi.simplex_tree, gudhi.rips_complex, gudhi.cubical_complex, gudhi.periodic_cubical_complex, gudhi.reader_utils, gudhi.witness_complex, gudhi.strong_witness_complex, gudhi.nerve_gic, gudhi.subsampling, gudhi.tangential_complex, gudhi.alpha_complex, gudhi.euclidean_witness_complex, gudhi.euclidean_strong_witness_complex, scipy._lib._ccallback_c, scipy.special._ufuncs_cxx, scipy.special._cdflib, scipy.special._ufuncs, scipy.special._specfun, scipy.special._comb, scipy.linalg._fblas, scipy.linalg._flapack, scipy.linalg.cython_lapack, scipy.linalg._cythonized_array_utils, scipy.linalg._solve_toeplitz, scipy.linalg._decomp_lu_cython, scipy.linalg._matfuncs_sqrtm_triu, scipy.linalg.cython_blas, scipy.linalg._matfuncs_expm, scipy.linalg._decomp_update, scipy.sparse._sparsetools, _csparsetools, scipy.sparse._csparsetools, scipy.sparse.linalg._dsolve._superlu, scipy.sparse.linalg._eigen.arpack._arpack, scipy.sparse.linalg._propack._spropack, scipy.sparse.linalg._propack._dpropack, scipy.sparse.linalg._propack._cpropack, scipy.sparse.linalg._propack._zpropack, scipy.sparse.csgraph._tools, scipy.sparse.csgraph._shortest_path, scipy.sparse.csgraph._traversal, scipy.sparse.csgraph._min_spanning_tree, scipy.sparse.csgraph._flow, scipy.sparse.csgraph._matching, scipy.sparse.csgraph._reordering, scipy.special._ellip_harm_2, scipy.interpolate._fitpack, scipy.interpolate.dfitpack, scipy.optimize._minpack2, scipy.optimize._group_columns, scipy._lib.messagestream, scipy.optimize._trlib._trlib, scipy.optimize._lbfgsb, _moduleTNC, scipy.optimize._moduleTNC, scipy.optimize._cobyla, scipy.optimize._slsqp, scipy.optimize._minpack, scipy.optimize._lsq.givens_elimination, scipy.optimize._zeros, scipy.optimize._highs.cython.src._highs_wrapper, scipy.optimize._highs._highs_wrapper, scipy.optimize._highs.cython.src._highs_constants, scipy.optimize._highs._highs_constants, scipy.linalg._interpolative, scipy.optimize._bglu_dense, scipy.optimize._lsap, scipy.spatial._ckdtree, scipy.spatial._qhull, scipy.spatial._voronoi, scipy.spatial._distance_wrap, scipy.spatial._hausdorff, scipy.spatial.transform._rotation, scipy.optimize._direct, scipy.interpolate._bspl, scipy.interpolate._ppoly, scipy.interpolate.interpnd, scipy.interpolate._rbfinterp_pythran, scipy.interpolate._rgi_cython, sklearn.__check_build._check_build, lz4._version, lz4.frame._frame, scipy.ndimage._nd_image, _ni_label, scipy.ndimage._ni_label, scipy.integrate._odepack, scipy.integrate._quadpack, scipy.integrate._vode, scipy.integrate._dop, scipy.integrate._lsoda, scipy.special.cython_special, scipy.stats._stats, scipy.stats.beta_ufunc, scipy.stats._boost.beta_ufunc, scipy.stats.binom_ufunc, scipy.stats._boost.binom_ufunc, scipy.stats.nbinom_ufunc, scipy.stats._boost.nbinom_ufunc, scipy.stats.hypergeom_ufunc, scipy.stats._boost.hypergeom_ufunc, scipy.stats.ncf_ufunc, scipy.stats._boost.ncf_ufunc, scipy.stats.ncx2_ufunc, scipy.stats._boost.ncx2_ufunc, scipy.stats.nct_ufunc, scipy.stats._boost.nct_ufunc, scipy.stats.skewnorm_ufunc, scipy.stats._boost.skewnorm_ufunc, scipy.stats.invgauss_ufunc, scipy.stats._boost.invgauss_ufunc, scipy.stats._biasedurn, scipy.stats._levy_stable.levyst, scipy.stats._stats_pythran, scipy._lib._uarray._uarray, scipy.stats._ansari_swilk_statistics, scipy.stats._sobol, scipy.stats._qmc_cy, scipy.stats._mvn, scipy.stats._rcont.rcont, scipy.stats._unuran.unuran_wrapper, sklearn.utils._isfinite, sklearn.utils.murmurhash, sklearn.utils._openmp_helpers, sklearn.metrics.cluster._expected_mutual_info_fast, sklearn.utils.sparsefuncs_fast, sklearn.preprocessing._csr_polynomial_expansion, sklearn.preprocessing._target_encoder_fast, sklearn.metrics._dist_metrics, sklearn.metrics._pairwise_distances_reduction._datasets_pair, sklearn.utils._cython_blas, sklearn.metrics._pairwise_distances_reduction._base, sklearn.metrics._pairwise_distances_reduction._middle_term_computer, sklearn.utils._heap, sklearn.utils._sorting, sklearn.metrics._pairwise_distances_reduction._argkmin, sklearn.metrics._pairwise_distances_reduction._argkmin_classmode, sklearn.utils._vector_sentinel, sklearn.metrics._pairwise_distances_reduction._radius_neighbors, sklearn.metrics._pairwise_distances_reduction._radius_neighbors_classmode, sklearn.metrics._pairwise_fast, sklearn.utils._fast_dict, sklearn.cluster._hierarchical_fast, sklearn.cluster._k_means_common, sklearn.cluster._k_means_elkan, sklearn.cluster._k_means_lloyd, sklearn.cluster._k_means_minibatch, sklearn.neighbors._partition_nodes, sklearn.neighbors._ball_tree, sklearn.neighbors._kd_tree, sklearn.utils.arrayfuncs, sklearn.utils._random, sklearn.utils._seq_dataset, sklearn.linear_model._cd_fast, sklearn._loss._loss, sklearn.svm._liblinear, sklearn.svm._libsvm, sklearn.svm._libsvm_sparse, sklearn.utils._weight_vector, sklearn.linear_model._sgd_fast, sklearn.linear_model._sag_fast, sklearn.decomposition._online_lda_fast, sklearn.decomposition._cdnmf_fast, sklearn.cluster._dbscan_inner, sklearn.cluster._hdbscan._tree, sklearn.cluster._hdbscan._linkage, sklearn.cluster._hdbscan._reachability, sklearn._isotonic, sklearn.tree._utils, sklearn.tree._tree, sklearn.tree._splitter, sklearn.tree._criterion, sklearn.neighbors._quad_tree, sklearn.manifold._barnes_hut_tsne, sklearn.manifold._utils, matplotlib._c_internal_utils, PIL._imaging, matplotlib._path, kiwisolver._cext, matplotlib._image, scipy.io.matlab._mio_utils, scipy.io.matlab._streams, scipy.io.matlab._mio5_utils, sklearn.datasets._svmlight_format_fast, sklearn.feature_extraction._hashing_fast, ot.lp.emd_wrap, scipy.cluster._vq, scipy.cluster._hierarchy, scipy.cluster._optimal_leaf_ordering (total: 202)
149s /tmp/autopkgtest.D4k3F4/build.l6H/src/debian/tests/python-upstream.sh: line 14:  3458 Aborted                 (core dumped) /usr/bin/python${py3ver} -B upstream.py test
149s autopkgtest [08:39:15]: test python-upstream.sh: -----------------------]
150s autopkgtest [08:39:16]: test python-upstream.sh:  - - - - - - - - - - results - - - - - - - - - -
150s python-upstream.sh   FAIL non-zero exit status 134
150s autopkgtest [08:39:16]: @@@@@@@@@@@@@@@@@@@@ summary
150s python-upstream.sh   FAIL non-zero exit status 134
161s nova [W] Skipping flock in bos03-arm64
161s Creating nova instance adt-plucky-arm64-gudhi-20241115-083646-juju-7f2275-prod-proposed-migration-environment-20-ad596efe-82bf-4fbd-8e45-997ab91fcf71 from image adt/ubuntu-plucky-arm64-server-20241115.img (UUID bf337bb2-b8c9-4fc7-87ba-f6e99408dba6)...