0s autopkgtest [09:19:47]: starting date and time: 2024-11-13 09:19:47+0000 0s autopkgtest [09:19:47]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [09:19:47]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.q4s0p0lb/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade gudhi --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-29.secgroup --name adt-plucky-arm64-gudhi-20241113-091947-juju-7f2275-prod-proposed-migration-environment-20-f12a53ad-3c7f-4d89-a844-bed71bfb1bd5 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 85s autopkgtest [09:21:12]: testbed dpkg architecture: arm64 85s autopkgtest [09:21:12]: testbed apt version: 2.9.8 85s autopkgtest [09:21:12]: @@@@@@@@@@@@@@@@@@@@ test bed setup 86s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 86s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 87s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 87s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 87s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 87s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB] 87s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 87s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB] 88s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB] 88s Fetched 1793 kB in 2s (974 kB/s) 88s Reading package lists... 90s Reading package lists... 91s Building dependency tree... 91s Reading state information... 92s Calculating upgrade... 92s The following NEW packages will be installed: 92s python3.13-gdbm 92s The following packages will be upgraded: 92s libpython3-stdlib python3 python3-gdbm python3-minimal 92s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 92s Need to get 101 kB of archives. 92s After this operation, 141 kB of additional disk space will be used. 92s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB] 92s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB] 93s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB] 93s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB] 93s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B] 93s Fetched 101 kB in 0s (260 kB/s) 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 94s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ... 94s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 94s Setting up python3-minimal (3.12.7-1) ... 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 94s Preparing to unpack .../python3_3.12.7-1_arm64.deb ... 94s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 94s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ... 94s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 94s Selecting previously unselected package python3.13-gdbm. 94s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ... 94s Unpacking python3.13-gdbm (3.13.0-2) ... 94s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ... 94s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 94s Setting up python3.13-gdbm (3.13.0-2) ... 94s Setting up libpython3-stdlib:arm64 (3.12.7-1) ... 94s Setting up python3 (3.12.7-1) ... 95s Setting up python3-gdbm:arm64 (3.12.7-1) ... 95s Processing triggers for man-db (2.12.1-3) ... 95s Reading package lists... 96s Building dependency tree... 96s Reading state information... 97s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 97s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 97s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 97s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 97s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 98s Reading package lists... 98s Reading package lists... 99s Building dependency tree... 99s Reading state information... 100s Calculating upgrade... 101s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 101s Reading package lists... 101s Building dependency tree... 101s Reading state information... 102s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 104s autopkgtest [09:21:31]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 105s autopkgtest [09:21:32]: @@@@@@@@@@@@@@@@@@@@ apt-source gudhi 111s Get:1 http://ftpmaster.internal/ubuntu plucky/universe gudhi 3.10.1+dfsg-1 (dsc) [3273 B] 111s Get:2 http://ftpmaster.internal/ubuntu plucky/universe gudhi 3.10.1+dfsg-1 (tar) [17.8 MB] 111s Get:3 http://ftpmaster.internal/ubuntu plucky/universe gudhi 3.10.1+dfsg-1 (diff) [11.5 kB] 111s gpgv: Signature made Thu Jul 4 13:27:51 2024 UTC 111s gpgv: using RSA key CFC5EF8510851E7355B55E809D11582AFD548CFA 111s gpgv: issuer "gspr@nonempty.org" 111s gpgv: Can't check signature: No public key 111s dpkg-source: warning: cannot verify inline signature for ./gudhi_3.10.1+dfsg-1.dsc: no acceptable signature found 112s autopkgtest [09:21:39]: testing package gudhi version 3.10.1+dfsg-1 113s autopkgtest [09:21:40]: build not needed 116s autopkgtest [09:21:43]: test python-upstream.sh: preparing testbed 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 123s Starting pkgProblemResolver with broken count: 0 123s Starting 2 pkgProblemResolver with broken count: 0 123s Done 124s The following additional packages will be installed: 124s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libblas3 124s libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 124s libharfbuzz0b libhwloc15 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 124s libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblerc4 124s libopenjp2-7 libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 124s libraqm0 libsharpyuv0 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 124s libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1 124s libxslt1.1 libxss1 python-matplotlib-data python3-all python3-appdirs 124s python3-brotli python3-contourpy python3-cycler python3-dateutil 124s python3-decorator python3-eagerpy python3-fonttools python3-fs python3-gudhi 124s python3-iniconfig python3-joblib python3-kiwisolver python3-lxml python3-lz4 124s python3-matplotlib python3-mpmath python3-numpy python3-packaging 124s python3-pil python3-pil.imagetk python3-pluggy python3-pot python3-pytest 124s python3-scipy python3-six python3-sklearn python3-sklearn-lib python3-sympy 124s python3-threadpoolctl python3-tk python3-tz python3-ufolib2 python3.12-tk 124s python3.13 python3.13-minimal python3.13-tk tk8.6-blt2.5 unicode-data 124s x11-common 124s Suggested packages: 124s blt-demo libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 python-cycler-doc 124s python3-torch python-joblib-doc python-lxml-doc cm-super-minimal dvipng 124s ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 124s librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi-cairo 124s python3-gobject python3-pyqt5 python3-sip python3-tornado 124s texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc 124s gfortran python-numpy-doc python3-dev python-pil-doc python-scipy-doc 124s python3-dap python-sklearn-doc texlive-fonts-extra python-sympy-doc tix 124s python3-tk-dbg python3.13-venv python3.13-doc binfmt-support 124s Recommended packages: 124s libhwloc-plugins javascript-common python3-simplejson python3-psutil 124s python3-bs4 python3-cssselect python3-html5lib python3-olefile g++ 124s | c++-compiler isympy-common 124s The following NEW packages will be installed: 124s autopkgtest-satdep blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 124s fonts-lyx libblas3 libdeflate0 libfontconfig1 libgfortran5 libgomp1 124s libgraphite2-3 libharfbuzz0b libhwloc15 libimagequant0 libjbig0 124s libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 124s liblcms2-2 liblerc4 libopenjp2-7 libpython3.13-minimal libpython3.13-stdlib 124s libqhull-r8.0 libraqm0 libsharpyuv0 libtbb12 libtbbbind-2-5 libtbbmalloc2 124s libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libxft2 124s libxrender1 libxslt1.1 libxss1 python-matplotlib-data python3-all 124s python3-appdirs python3-brotli python3-contourpy python3-cycler 124s python3-dateutil python3-decorator python3-eagerpy python3-fonttools 124s python3-fs python3-gudhi python3-iniconfig python3-joblib python3-kiwisolver 124s python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-numpy 124s python3-packaging python3-pil python3-pil.imagetk python3-pluggy python3-pot 124s python3-pytest python3-scipy python3-six python3-sklearn python3-sklearn-lib 124s python3-sympy python3-threadpoolctl python3-tk python3-tz python3-ufolib2 124s python3.12-tk python3.13 python3.13-minimal python3.13-tk tk8.6-blt2.5 124s unicode-data x11-common 124s 0 upgraded, 85 newly installed, 0 to remove and 0 not upgraded. 124s Need to get 69.5 MB/69.5 MB of archives. 124s After this operation, 303 MB of additional disk space will be used. 124s Get:1 /tmp/autopkgtest.TUVrVC/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [756 B] 125s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB] 125s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.0-2 [2100 kB] 125s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [987 kB] 125s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 126s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 126s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB] 126s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB] 126s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 126s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 126s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 126s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 126s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.15-1 [774 kB] 126s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7build1 [618 kB] 126s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 blt arm64 2.5.3+dfsg-7build1 [4840 B] 126s Get:16 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lyx all 2.4.2.1-1 [171 kB] 126s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 126s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.22-1 [46.2 kB] 126s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB] 126s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB] 126s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 126s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.0.1-1 [487 kB] 126s Get:23 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhwloc15 arm64 2.11.2-1 [162 kB] 126s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 126s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu2 [163 kB] 126s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 126s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 126s Get:28 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 126s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 126s Get:30 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 126s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 126s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu2 [154 kB] 126s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [2073 kB] 126s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 126s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libraqm0 arm64 0.10.1-1build1 [14.7 kB] 126s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [16.3 kB] 126s Get:37 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtbbmalloc2 arm64 2021.12.0-1ubuntu2 [38.5 kB] 126s Get:38 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtbbbind-2-5 arm64 2021.12.0-1ubuntu2 [14.9 kB] 126s Get:39 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtbb12 arm64 2021.12.0-1ubuntu2 [68.1 kB] 126s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 126s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.4.0-0.1 [192 kB] 126s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 126s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [12.3 kB] 126s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpmux3 arm64 1.4.0-0.1 [25.1 kB] 126s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libxslt1.1 arm64 1.1.39-0exp1ubuntu1 [167 kB] 126s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-matplotlib-data all 3.8.3-3 [2928 kB] 127s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.0-2 [719 kB] 127s Get:48 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all arm64 3.12.7-1 [890 B] 127s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-appdirs all 1.4.4-4 [10.9 kB] 127s Get:50 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-brotli arm64 1.1.0-2build2 [340 kB] 127s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB] 127s Get:52 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-contourpy arm64 1.3.0-2 [179 kB] 127s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-cycler all 0.12.1-1 [9716 B] 127s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-six all 1.16.0-7 [13.1 kB] 127s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-2 [80.3 kB] 127s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 127s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-eagerpy all 0.30.0-3 [19.0 kB] 127s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.13.1-5 [16.3 MB] 127s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 127s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mpmath all 1.3.0-1 [425 kB] 127s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sympy all 1.13.3-1 [4228 kB] 128s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tz all 2024.1-2 [31.4 kB] 128s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fs all 2.4.16-4 [91.3 kB] 128s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-lxml arm64 5.3.0-1 [1205 kB] 128s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-lz4 arm64 4.0.2+dfsg-1build4 [26.7 kB] 128s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 unicode-data all 15.1.0-1 [8878 kB] 128s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fonttools arm64 4.46.0-1build2 [1398 kB] 128s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-gudhi arm64 3.10.1+dfsg-1 [1523 kB] 128s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 128s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-joblib all 1.3.2-5 [206 kB] 128s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-kiwisolver arm64 1.4.7-2 [50.4 kB] 128s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libopenjp2-7 arm64 2.5.0-2ubuntu1 [182 kB] 128s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pil arm64 10.4.0-1ubuntu1 [456 kB] 128s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-tk arm64 3.12.7-3 [115 kB] 128s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-tk arm64 3.13.0-2 [105 kB] 128s Get:76 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-tk arm64 3.12.7-1 [9752 B] 128s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pil.imagetk arm64 10.4.0-1ubuntu1 [9504 B] 128s Get:78 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.1-1 [41.4 kB] 128s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-matplotlib arm64 3.8.3-3 [4515 kB] 128s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 128s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pot arm64 0.9.4+dfsg-1 [219 kB] 128s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB] 128s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 128s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sklearn-lib arm64 1.4.2+dfsg-6 [3806 kB] 128s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sklearn all 1.4.2+dfsg-6 [2257 kB] 129s Fetched 69.5 MB in 4s (18.2 MB/s) 129s Selecting previously unselected package libpython3.13-minimal:arm64. 129s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79931 files and directories currently installed.) 129s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_arm64.deb ... 129s Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ... 129s Selecting previously unselected package python3.13-minimal. 129s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_arm64.deb ... 129s Unpacking python3.13-minimal (3.13.0-2) ... 129s Selecting previously unselected package libtcl8.6:arm64. 129s Preparing to 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Setting up libdeflate0:arm64 (1.22-1) ... 137s Setting up libqhull-r8.0:arm64 (2020.2-6build1) ... 137s Setting up libgomp1:arm64 (14.2.0-8ubuntu1) ... 137s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 137s Setting up python3-tz (2024.1-2) ... 137s Setting up unicode-data (15.1.0-1) ... 137s Setting up python3-six (1.16.0-7) ... 137s Setting up libpython3.13-minimal:arm64 (3.13.0-2) ... 137s Setting up python3-decorator (5.1.1-5) ... 138s Setting up libblas3:arm64 (3.12.0-3build2) ... 138s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 138s Setting up python3-packaging (24.1-1) ... 138s Setting up python3-brotli (1.1.0-2build2) ... 138s Setting up python3-cycler (0.12.1-1) ... 138s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 138s Setting up fonts-dejavu-mono (2.37-8) ... 138s Setting up python3-kiwisolver (1.4.7-2) ... 139s Setting up libhwloc15:arm64 (2.11.2-1) ... 139s Setting up libtcl8.6:arm64 (8.6.15+dfsg-2) ... 139s Setting up fonts-dejavu-core (2.37-8) ... 139s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ... 139s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ... 139s Setting up python3-pluggy (1.5.0-1) ... 139s Setting up libwebp7:arm64 (1.4.0-0.1) ... 139s Setting up libxslt1.1:arm64 (1.1.39-0exp1ubuntu1) ... 139s Setting up libopenjp2-7:arm64 (2.5.0-2ubuntu1) ... 139s Setting up python3.13-minimal (3.13.0-2) ... 140s Setting up libharfbuzz0b:arm64 (10.0.1-1) ... 140s Setting up python3-dateutil (2.9.0-2) ... 140s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 140s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 140s Setting up python3-mpmath (1.3.0-1) ... 141s Setting up python-matplotlib-data (3.8.3-3) ... 141s Setting up libwebpmux3:arm64 (1.4.0-0.1) ... 141s Setting up python3-appdirs (1.4.4-4) ... 142s Setting up libpython3.13-stdlib:arm64 (3.13.0-2) ... 142s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 142s Setting up python3-sympy (1.13.3-1) ... 157s Setting up liblapack3:arm64 (3.12.0-3build2) ... 157s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 157s Setting up python3.13 (3.13.0-2) ... 158s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 158s Setting up python3-pytest (8.3.3-1) ... 159s Setting up libwebpdemux2:arm64 (1.4.0-0.1) ... 159s Setting up python3-all (3.12.7-1) ... 159s Setting up libtbbbind-2-5:arm64 (2021.12.0-1ubuntu2) ... 159s Setting up python3-fs (2.4.16-4) ... 159s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 159s Setting up libraqm0:arm64 (0.10.1-1build1) ... 159s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 163s Setting up python3-lxml:arm64 (5.3.0-1) ... 164s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 164s Setting up python3-contourpy (1.3.0-2) ... 164s Setting up libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... 164s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 164s Setting up libxft2:arm64 (2.3.6-1build1) ... 164s Setting up python3-scipy (1.13.1-5) ... 172s Setting up python3-pot (0.9.4+dfsg-1) ... 172s Setting up libtk8.6:arm64 (8.6.15-1) ... 172s Setting up python3.12-tk (3.12.7-3) ... 172s Setting up python3-sklearn-lib:arm64 (1.4.2+dfsg-6) ... 172s Setting up libtbb12:arm64 (2021.12.0-1ubuntu2) ... 172s Setting up python3.13-tk (3.13.0-2) ... 172s Setting up python3-pil:arm64 (10.4.0-1ubuntu1) ... 173s Setting up python3-eagerpy (0.30.0-3) ... 174s Setting up python3-sklearn (1.4.2+dfsg-6) ... 178s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 178s Setting up blt (2.5.3+dfsg-7build1) ... 178s Setting up python3-tk:arm64 (3.12.7-1) ... 178s Setting up python3-gudhi (3.10.1+dfsg-1) ... 178s Setting up python3-pil.imagetk:arm64 (10.4.0-1ubuntu1) ... 179s Setting up python3-fonttools (4.46.0-1build2) ... 181s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... 181s Setting up python3-matplotlib (3.8.3-3) ... 184s Setting up autopkgtest-satdep (0) ... 184s Processing triggers for libc-bin (2.40-1ubuntu3) ... 184s Processing triggers for systemd (256.5-2ubuntu4) ... 184s Processing triggers for man-db (2.12.1-3) ... 190s (Reading database ... 89022 files and directories currently installed.) 190s Removing autopkgtest-satdep (0) ... 191s autopkgtest [09:22:58]: test python-upstream.sh: [----------------------- 191s Running tests with Python 3.13. 193s Blacklist: ['test_knn.py', 'test_representations.py', 'test_wasserstein_distance.py::test_wasserstein_distance_grad', 'test_remote_datasets.py'] 193s Ignorelist: ['test_diff.py', 'test_dtm.py', 'test_perslay.py', 'test_wasserstein_with_tensors.py'] 193s ============================= test session starts ============================== 193s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 193s rootdir: /tmp/autopkgtest.TUVrVC/autopkgtest_tmp 193s plugins: typeguard-4.4.1 193s collected 4 items / 29 errors 193s 193s ==================================== ERRORS ==================================== 193s _________________ ERROR collecting test/test_alpha_complex.py __________________ 193s ImportError while importing test module '/tmp/autopkgtest.TUVrVC/autopkgtest_tmp/test/test_alpha_complex.py'. 193s Hint: make sure your test modules/packages have valid Python names. 193s Traceback: 193s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 193s return _bootstrap._gcd_import(name[level:], package, level) 193s test/test_alpha_complex.py:11: in 193s from gudhi import AlphaComplex 193s E ImportError: cannot import name 'AlphaComplex' from 'gudhi' (/usr/lib/python3/dist-packages/gudhi/__init__.py) 193s __________ ERROR collecting test/test_betti_curve_representations.py ___________ 193s ImportError while importing test module '/tmp/autopkgtest.TUVrVC/autopkgtest_tmp/test/test_betti_curve_representations.py'. 193s Hint: make sure your test modules/packages have valid Python names. 193s Traceback: 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 193s from . import multiarray 193s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 193s from . import overrides 193s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 193s from numpy.core._multiarray_umath import ( 193s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 193s 193s During handling of the above exception, another exception occurred: 193s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 193s from numpy.__config__ import show as show_config 193s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 193s from numpy.core._multiarray_umath import ( 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 193s raise ImportError(msg) 193s E ImportError: 193s E 193s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 193s E 193s E Importing the numpy C-extensions failed. This error can happen for 193s E many reasons, often due to issues with your setup or how NumPy was 193s E installed. 193s E 193s E We have compiled some common reasons and troubleshooting tips at: 193s E 193s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 193s E 193s E Please note and check the following: 193s E 193s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 193s E * The NumPy version is: "1.26.4" 193s E 193s E and make sure that they are the versions you expect. 193s E Please carefully study the documentation linked above for further help. 193s E 193s E Original error was: No module named 'numpy.core._multiarray_umath' 193s 193s The above exception was the direct cause of the following exception: 193s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 193s return _bootstrap._gcd_import(name[level:], package, level) 193s test/test_betti_curve_representations.py:1: in 193s import numpy as np 193s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 193s raise ImportError(msg) from e 193s E ImportError: Error importing numpy: you should not try to import numpy from 193s E its source directory; please exit the numpy source tree, and relaunch 193s E your python interpreter from there. 193s ______________ ERROR collecting test/test_bottleneck_distance.py _______________ 193s ImportError while importing test module '/tmp/autopkgtest.TUVrVC/autopkgtest_tmp/test/test_bottleneck_distance.py'. 193s Hint: make sure your test modules/packages have valid Python names. 193s Traceback: 193s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 193s return _bootstrap._gcd_import(name[level:], package, level) 193s test/test_bottleneck_distance.py:12: in 193s import gudhi.hera 193s /usr/lib/python3/dist-packages/gudhi/hera/__init__.py:1: in 193s from .wasserstein import wasserstein_distance 193s E ModuleNotFoundError: No module named 'gudhi.hera.wasserstein' 193s _________________ ERROR collecting test/test_collapse_edges.py _________________ 193s ImportError while importing test module '/tmp/autopkgtest.TUVrVC/autopkgtest_tmp/test/test_collapse_edges.py'. 193s Hint: make sure your test modules/packages have valid Python names. 193s Traceback: 193s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 193s return _bootstrap._gcd_import(name[level:], package, level) 193s test/test_collapse_edges.py:11: in 193s from gudhi.flag_filtration.edge_collapse import reduce_graph as collapse_edges 193s /usr/lib/python3/dist-packages/gudhi/flag_filtration/edge_collapse.py:10: in 193s from .._edge_collapse import _collapse_edges 193s E ModuleNotFoundError: No module named 'gudhi._edge_collapse' 193s _________________ ERROR collecting test/test_cover_complex.py __________________ 193s ImportError while importing test module '/tmp/autopkgtest.TUVrVC/autopkgtest_tmp/test/test_cover_complex.py'. 193s Hint: make sure your test modules/packages have valid Python names. 193s Traceback: 193s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 193s return _bootstrap._gcd_import(name[level:], package, level) 193s test/test_cover_complex.py:11: in 193s from gudhi import CoverComplex 193s E ImportError: cannot import name 'CoverComplex' from 'gudhi' (/usr/lib/python3/dist-packages/gudhi/__init__.py) 193s ________________ ERROR collecting test/test_cubical_complex.py _________________ 193s ImportError while importing test module '/tmp/autopkgtest.TUVrVC/autopkgtest_tmp/test/test_cubical_complex.py'. 193s Hint: make sure your test modules/packages have valid Python names. 193s Traceback: 193s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 193s return _bootstrap._gcd_import(name[level:], package, level) 193s test/test_cubical_complex.py:11: in 193s from gudhi import CubicalComplex, PeriodicCubicalComplex 193s E ImportError: cannot import name 'CubicalComplex' from 'gudhi' (/usr/lib/python3/dist-packages/gudhi/__init__.py) 193s ______________ ERROR collecting test/test_datasets_generators.py _______________ 193s ImportError while importing test module '/tmp/autopkgtest.TUVrVC/autopkgtest_tmp/test/test_datasets_generators.py'. 193s Hint: make sure your test modules/packages have valid Python names. 193s Traceback: 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 193s from . import multiarray 193s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 193s from . import overrides 193s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 193s from numpy.core._multiarray_umath import ( 193s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 193s 193s During handling of the above exception, another exception occurred: 193s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 193s from numpy.__config__ import show as show_config 193s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 193s from numpy.core._multiarray_umath import ( 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 193s raise ImportError(msg) 193s E ImportError: 193s E 193s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 193s E 193s E Importing the numpy C-extensions failed. This error can happen for 193s E many reasons, often due to issues with your setup or how NumPy was 193s E installed. 193s E 193s E We have compiled some common reasons and troubleshooting tips at: 193s E 193s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 193s E 193s E Please note and check the following: 193s E 193s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 193s E * The NumPy version is: "1.26.4" 193s E 193s E and make sure that they are the versions you expect. 193s E Please carefully study the documentation linked above for further help. 193s E 193s E Original error was: No module named 'numpy.core._multiarray_umath' 193s 193s The above exception was the direct cause of the following exception: 193s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 193s return _bootstrap._gcd_import(name[level:], package, level) 193s test/test_datasets_generators.py:11: in 193s from gudhi.datasets.generators import points 193s /usr/lib/python3/dist-packages/gudhi/datasets/generators/points.py:10: in 193s import numpy as np 193s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 193s raise ImportError(msg) from e 193s E ImportError: Error importing numpy: you should not try to import numpy from 193s E its source directory; please exit the numpy source tree, and relaunch 193s E your python interpreter from there. 193s ________________ ERROR collecting test/test_dtm_rips_complex.py ________________ 193s ImportError while importing test module '/tmp/autopkgtest.TUVrVC/autopkgtest_tmp/test/test_dtm_rips_complex.py'. 193s Hint: make sure your test modules/packages have valid Python names. 193s Traceback: 193s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 193s return _bootstrap._gcd_import(name[level:], package, level) 193s test/test_dtm_rips_complex.py:11: in 193s from gudhi.dtm_rips_complex import DTMRipsComplex 193s /usr/lib/python3/dist-packages/gudhi/dtm_rips_complex.py:11: in 193s from gudhi.weighted_rips_complex import WeightedRipsComplex 193s /usr/lib/python3/dist-packages/gudhi/weighted_rips_complex.py:10: in 193s from gudhi import SimplexTree 193s E ImportError: cannot import name 'SimplexTree' from 'gudhi' (/usr/lib/python3/dist-packages/gudhi/__init__.py) 193s ______________________ ERROR collecting test/test_knn.py _______________________ 193s ImportError while importing test module '/tmp/autopkgtest.TUVrVC/autopkgtest_tmp/test/test_knn.py'. 193s Hint: make sure your test modules/packages have valid Python names. 193s Traceback: 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 193s from . import multiarray 193s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 193s from . import overrides 193s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 193s from numpy.core._multiarray_umath import ( 193s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 193s 193s During handling of the above exception, another exception occurred: 193s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 193s from numpy.__config__ import show as show_config 193s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 193s from numpy.core._multiarray_umath import ( 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 193s raise ImportError(msg) 193s E ImportError: 193s E 193s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 193s E 193s E Importing the numpy C-extensions failed. This error can happen for 193s E many reasons, often due to issues with your setup or how NumPy was 193s E installed. 193s E 193s E We have compiled some common reasons and troubleshooting tips at: 193s E 193s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 193s E 193s E Please note and check the following: 193s E 193s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 193s E * The NumPy version is: "1.26.4" 193s E 193s E and make sure that they are the versions you expect. 193s E Please carefully study the documentation linked above for further help. 193s E 193s E Original error was: No module named 'numpy.core._multiarray_umath' 193s 193s The above exception was the direct cause of the following exception: 193s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 193s return _bootstrap._gcd_import(name[level:], package, level) 193s test/test_knn.py:11: in 193s from gudhi.point_cloud.knn import KNearestNeighbors 193s /usr/lib/python3/dist-packages/gudhi/point_cloud/knn.py:10: in 193s import numpy 193s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 193s raise ImportError(msg) from e 193s E ImportError: Error importing numpy: you should not try to import numpy from 193s E its source directory; please exit the numpy source tree, and relaunch 193s E your python interpreter from there. 193s ______________________ ERROR collecting test/test_off.py _______________________ 193s ImportError while importing test module '/tmp/autopkgtest.TUVrVC/autopkgtest_tmp/test/test_off.py'. 193s Hint: make sure your test modules/packages have valid Python names. 193s Traceback: 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 193s from . import multiarray 193s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 193s from . import overrides 193s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 193s from numpy.core._multiarray_umath import ( 193s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 193s 193s During handling of the above exception, another exception occurred: 193s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 193s from numpy.__config__ import show as show_config 193s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 193s from numpy.core._multiarray_umath import ( 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 193s raise ImportError(msg) 193s E ImportError: 193s E 193s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 193s E 193s E Importing the numpy C-extensions failed. This error can happen for 193s E many reasons, often due to issues with your setup or how NumPy was 193s E installed. 193s E 193s E We have compiled some common reasons and troubleshooting tips at: 193s E 193s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 193s E 193s E Please note and check the following: 193s E 193s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 193s E * The NumPy version is: "1.26.4" 193s E 193s E and make sure that they are the versions you expect. 193s E Please carefully study the documentation linked above for further help. 193s E 193s E Original error was: No module named 'numpy.core._multiarray_umath' 193s 193s The above exception was the direct cause of the following exception: 193s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 193s return _bootstrap._gcd_import(name[level:], package, level) 193s test/test_off.py:12: in 193s import numpy as np 193s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 193s raise ImportError(msg) from e 193s E ImportError: Error importing numpy: you should not try to import numpy from 193s E its source directory; please exit the numpy source tree, and relaunch 193s E your python interpreter from there. 193s __________ ERROR collecting test/test_persistence_graphical_tools.py ___________ 193s ImportError while importing test module '/tmp/autopkgtest.TUVrVC/autopkgtest_tmp/test/test_persistence_graphical_tools.py'. 193s Hint: make sure your test modules/packages have valid Python names. 193s Traceback: 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 193s from . import multiarray 193s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 193s from . import overrides 193s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 193s from numpy.core._multiarray_umath import ( 193s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 193s 193s During handling of the above exception, another exception occurred: 193s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 193s from numpy.__config__ import show as show_config 193s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 193s from numpy.core._multiarray_umath import ( 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 193s raise ImportError(msg) 193s E ImportError: 193s E 193s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 193s E 193s E Importing the numpy C-extensions failed. This error can happen for 193s E many reasons, often due to issues with your setup or how NumPy was 193s E installed. 193s E 193s E We have compiled some common reasons and troubleshooting tips at: 193s E 193s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 193s E 193s E Please note and check the following: 193s E 193s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 193s E * The NumPy version is: "1.26.4" 193s E 193s E and make sure that they are the versions you expect. 193s E Please carefully study the documentation linked above for further help. 193s E 193s E Original error was: No module named 'numpy.core._multiarray_umath' 193s 193s The above exception was the direct cause of the following exception: 193s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 193s return _bootstrap._gcd_import(name[level:], package, level) 193s test/test_persistence_graphical_tools.py:12: in 193s import numpy as np 193s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 193s raise ImportError(msg) from e 193s E ImportError: Error importing numpy: you should not try to import numpy from 193s E its source directory; please exit the numpy source tree, and relaunch 193s E your python interpreter from there. 193s __________________ ERROR collecting test/test_reader_utils.py __________________ 193s ImportError while importing test module '/tmp/autopkgtest.TUVrVC/autopkgtest_tmp/test/test_reader_utils.py'. 193s Hint: make sure your test modules/packages have valid Python names. 193s Traceback: 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 193s from . import multiarray 193s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 193s from . import overrides 193s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 193s from numpy.core._multiarray_umath import ( 193s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 193s 193s During handling of the above exception, another exception occurred: 193s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 193s from numpy.__config__ import show as show_config 193s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 193s from numpy.core._multiarray_umath import ( 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 193s raise ImportError(msg) 193s E ImportError: 193s E 193s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 193s E 193s E Importing the numpy C-extensions failed. This error can happen for 193s E many reasons, often due to issues with your setup or how NumPy was 193s E installed. 193s E 193s E We have compiled some common reasons and troubleshooting tips at: 193s E 193s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 193s E 193s E Please note and check the following: 193s E 193s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 193s E * The NumPy version is: "1.26.4" 193s E 193s E and make sure that they are the versions you expect. 193s E Please carefully study the documentation linked above for further help. 193s E 193s E Original error was: No module named 'numpy.core._multiarray_umath' 193s 193s The above exception was the direct cause of the following exception: 193s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 193s return _bootstrap._gcd_import(name[level:], package, level) 193s test/test_reader_utils.py:12: in 193s import numpy as np 193s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 193s raise ImportError(msg) from e 193s E ImportError: Error importing numpy: you should not try to import numpy from 193s E its source directory; please exit the numpy source tree, and relaunch 193s E your python interpreter from there. 193s ________________ ERROR collecting test/test_remote_datasets.py _________________ 193s ImportError while importing test module '/tmp/autopkgtest.TUVrVC/autopkgtest_tmp/test/test_remote_datasets.py'. 193s Hint: make sure your test modules/packages have valid Python names. 193s Traceback: 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 193s from . import multiarray 193s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 193s from . import overrides 193s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 193s from numpy.core._multiarray_umath import ( 193s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 193s 193s During handling of the above exception, another exception occurred: 193s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 193s from numpy.__config__ import show as show_config 193s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 193s from numpy.core._multiarray_umath import ( 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 193s raise ImportError(msg) 193s E ImportError: 193s E 193s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 193s E 193s E Importing the numpy C-extensions failed. This error can happen for 193s E many reasons, often due to issues with your setup or how NumPy was 193s E installed. 193s E 193s E We have compiled some common reasons and troubleshooting tips at: 193s E 193s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 193s E 193s E Please note and check the following: 193s E 193s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 193s E * The NumPy version is: "1.26.4" 193s E 193s E and make sure that they are the versions you expect. 193s E Please carefully study the documentation linked above for further help. 193s E 193s E Original error was: No module named 'numpy.core._multiarray_umath' 193s 193s The above exception was the direct cause of the following exception: 193s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 193s return _bootstrap._gcd_import(name[level:], package, level) 193s test/test_remote_datasets.py:12: in 193s from gudhi.datasets import remote 193s /usr/lib/python3/dist-packages/gudhi/datasets/remote.py:20: in 193s import numpy as np 193s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 193s raise ImportError(msg) from e 193s E ImportError: Error importing numpy: you should not try to import numpy from 193s E its source directory; please exit the numpy source tree, and relaunch 193s E your python interpreter from there. 193s ________________ ERROR collecting test/test_representations.py _________________ 193s ImportError while importing test module '/tmp/autopkgtest.TUVrVC/autopkgtest_tmp/test/test_representations.py'. 193s Hint: make sure your test modules/packages have valid Python names. 193s Traceback: 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 193s from . import multiarray 193s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 193s from . import overrides 193s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 193s from numpy.core._multiarray_umath import ( 193s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 193s 193s During handling of the above exception, another exception occurred: 193s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 193s from numpy.__config__ import show as show_config 193s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 193s from numpy.core._multiarray_umath import ( 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 193s raise ImportError(msg) 193s E ImportError: 193s E 193s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 193s E 193s E Importing the numpy C-extensions failed. This error can happen for 193s E many reasons, often due to issues with your setup or how NumPy was 193s E installed. 193s E 193s E We have compiled some common reasons and troubleshooting tips at: 193s E 193s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 193s E 193s E Please note and check the following: 193s E 193s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 193s E * The NumPy version is: "1.26.4" 193s E 193s E and make sure that they are the versions you expect. 193s E Please carefully study the documentation linked above for further help. 193s E 193s E Original error was: No module named 'numpy.core._multiarray_umath' 193s 193s The above exception was the direct cause of the following exception: 193s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 193s return _bootstrap._gcd_import(name[level:], package, level) 193s test/test_representations.py:3: in 193s import matplotlib.pyplot as plt 193s /usr/lib/python3/dist-packages/matplotlib/__init__.py:156: in 193s import numpy 193s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 193s raise ImportError(msg) from e 193s E ImportError: Error importing numpy: you should not try to import numpy from 193s E its source directory; please exit the numpy source tree, and relaunch 193s E your python interpreter from there. 193s _________ ERROR collecting test/test_representations_preprocessing.py __________ 193s ImportError while importing test module '/tmp/autopkgtest.TUVrVC/autopkgtest_tmp/test/test_representations_preprocessing.py'. 193s Hint: make sure your test modules/packages have valid Python names. 193s Traceback: 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 193s from . import multiarray 193s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 193s from . import overrides 193s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 193s from numpy.core._multiarray_umath import ( 193s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 193s 193s During handling of the above exception, another exception occurred: 193s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 193s from numpy.__config__ import show as show_config 193s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 193s from numpy.core._multiarray_umath import ( 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 193s raise ImportError(msg) 193s E ImportError: 193s E 193s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 193s E 193s E Importing the numpy C-extensions failed. This error can happen for 193s E many reasons, often due to issues with your setup or how NumPy was 193s E installed. 193s E 193s E We have compiled some common reasons and troubleshooting tips at: 193s E 193s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 193s E 193s E Please note and check the following: 193s E 193s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 193s E * The NumPy version is: "1.26.4" 193s E 193s E and make sure that they are the versions you expect. 193s E Please carefully study the documentation linked above for further help. 193s E 193s E Original error was: No module named 'numpy.core._multiarray_umath' 193s 193s The above exception was the direct cause of the following exception: 193s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 193s return _bootstrap._gcd_import(name[level:], package, level) 193s test/test_representations_preprocessing.py:11: in 193s from gudhi.representations.preprocessing import DimensionSelector 193s /usr/lib/python3/dist-packages/gudhi/representations/__init__.py:1: in 193s from .kernel_methods import * 193s /usr/lib/python3/dist-packages/gudhi/representations/kernel_methods.py:10: in 193s import numpy as np 193s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 193s raise ImportError(msg) from e 193s E ImportError: Error importing numpy: you should not try to import numpy from 193s E its source directory; please exit the numpy source tree, and relaunch 193s E your python interpreter from there. 193s __________________ ERROR collecting test/test_rips_complex.py __________________ 193s ImportError while importing test module '/tmp/autopkgtest.TUVrVC/autopkgtest_tmp/test/test_rips_complex.py'. 193s Hint: make sure your test modules/packages have valid Python names. 193s Traceback: 193s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 193s return _bootstrap._gcd_import(name[level:], package, level) 193s test/test_rips_complex.py:11: in 193s from gudhi import RipsComplex 193s E ImportError: cannot import name 'RipsComplex' from 'gudhi' (/usr/lib/python3/dist-packages/gudhi/__init__.py) 193s _______________ ERROR collecting test/test_simplex_generators.py _______________ 193s ImportError while importing test module '/tmp/autopkgtest.TUVrVC/autopkgtest_tmp/test/test_simplex_generators.py'. 193s Hint: make sure your test modules/packages have valid Python names. 193s Traceback: 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 193s from . import multiarray 193s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 193s from . import overrides 193s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 193s from numpy.core._multiarray_umath import ( 193s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 193s 193s During handling of the above exception, another exception occurred: 193s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 193s from numpy.__config__ import show as show_config 193s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 193s from numpy.core._multiarray_umath import ( 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 193s raise ImportError(msg) 193s E ImportError: 193s E 193s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 193s E 193s E Importing the numpy C-extensions failed. This error can happen for 193s E many reasons, often due to issues with your setup or how NumPy was 193s E installed. 193s E 193s E We have compiled some common reasons and troubleshooting tips at: 193s E 193s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 193s E 193s E Please note and check the following: 193s E 193s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 193s E * The NumPy version is: "1.26.4" 193s E 193s E and make sure that they are the versions you expect. 193s E Please carefully study the documentation linked above for further help. 193s E 193s E Original error was: No module named 'numpy.core._multiarray_umath' 193s 193s The above exception was the direct cause of the following exception: 193s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 193s return _bootstrap._gcd_import(name[level:], package, level) 193s test/test_simplex_generators.py:12: in 193s import numpy as np 193s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 193s raise ImportError(msg) from e 193s E ImportError: Error importing numpy: you should not try to import numpy from 193s E its source directory; please exit the numpy source tree, and relaunch 193s E your python interpreter from there. 193s __________________ ERROR collecting test/test_simplex_tree.py __________________ 193s ImportError while importing test module '/tmp/autopkgtest.TUVrVC/autopkgtest_tmp/test/test_simplex_tree.py'. 193s Hint: make sure your test modules/packages have valid Python names. 193s Traceback: 193s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 193s return _bootstrap._gcd_import(name[level:], package, level) 193s test/test_simplex_tree.py:11: in 193s from gudhi import SimplexTree 193s E ImportError: cannot import name 'SimplexTree' from 'gudhi' (/usr/lib/python3/dist-packages/gudhi/__init__.py) 193s ___________ ERROR collecting test/test_simplex_tree_serialization.py ___________ 193s ImportError while importing test module '/tmp/autopkgtest.TUVrVC/autopkgtest_tmp/test/test_simplex_tree_serialization.py'. 193s Hint: make sure your test modules/packages have valid Python names. 193s Traceback: 193s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 193s return _bootstrap._gcd_import(name[level:], package, level) 193s test/test_simplex_tree_serialization.py:11: in 193s from gudhi import SimplexTree 193s E ImportError: cannot import name 'SimplexTree' from 'gudhi' (/usr/lib/python3/dist-packages/gudhi/__init__.py) 193s __________ ERROR collecting test/test_sklearn_cubical_persistence.py ___________ 193s ImportError while importing test module '/tmp/autopkgtest.TUVrVC/autopkgtest_tmp/test/test_sklearn_cubical_persistence.py'. 193s Hint: make sure your test modules/packages have valid Python names. 193s Traceback: 193s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 193s return _bootstrap._gcd_import(name[level:], package, level) 193s test/test_sklearn_cubical_persistence.py:11: in 193s from gudhi.sklearn.cubical_persistence import CubicalPersistence 193s /usr/lib/python3/dist-packages/gudhi/sklearn/cubical_persistence.py:10: in 193s from .. import CubicalComplex 193s E ImportError: cannot import name 'CubicalComplex' from 'gudhi' (/usr/lib/python3/dist-packages/gudhi/__init__.py) 193s ____________ ERROR collecting test/test_sklearn_rips_persistence.py ____________ 193s ImportError while importing test module '/tmp/autopkgtest.TUVrVC/autopkgtest_tmp/test/test_sklearn_rips_persistence.py'. 193s Hint: make sure your test modules/packages have valid Python names. 193s Traceback: 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 193s from . import multiarray 193s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 193s from . import overrides 193s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 193s from numpy.core._multiarray_umath import ( 193s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 193s 193s During handling of the above exception, another exception occurred: 193s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 193s from numpy.__config__ import show as show_config 193s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 193s from numpy.core._multiarray_umath import ( 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 193s raise ImportError(msg) 193s E ImportError: 193s E 193s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 193s E 193s E Importing the numpy C-extensions failed. This error can happen for 193s E many reasons, often due to issues with your setup or how NumPy was 193s E installed. 193s E 193s E We have compiled some common reasons and troubleshooting tips at: 193s E 193s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 193s E 193s E Please note and check the following: 193s E 193s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 193s E * The NumPy version is: "1.26.4" 193s E 193s E and make sure that they are the versions you expect. 193s E Please carefully study the documentation linked above for further help. 193s E 193s E Original error was: No module named 'numpy.core._multiarray_umath' 193s 193s The above exception was the direct cause of the following exception: 193s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 193s return _bootstrap._gcd_import(name[level:], package, level) 193s test/test_sklearn_rips_persistence.py:11: in 193s from gudhi.datasets.generators import points 193s /usr/lib/python3/dist-packages/gudhi/datasets/generators/points.py:10: in 193s import numpy as np 193s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 193s raise ImportError(msg) from e 193s E ImportError: Error importing numpy: you should not try to import numpy from 193s E its source directory; please exit the numpy source tree, and relaunch 193s E your python interpreter from there. 193s __________________ ERROR collecting test/test_subsampling.py ___________________ 193s ImportError while importing test module '/tmp/autopkgtest.TUVrVC/autopkgtest_tmp/test/test_subsampling.py'. 193s Hint: make sure your test modules/packages have valid Python names. 193s Traceback: 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 193s from . import multiarray 193s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 193s from . import overrides 193s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 193s from numpy.core._multiarray_umath import ( 193s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 193s 193s During handling of the above exception, another exception occurred: 193s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 193s from numpy.__config__ import show as show_config 193s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 193s from numpy.core._multiarray_umath import ( 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 193s raise ImportError(msg) 193s E ImportError: 193s E 193s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 193s E 193s E Importing the numpy C-extensions failed. This error can happen for 193s E many reasons, often due to issues with your setup or how NumPy was 193s E installed. 193s E 193s E We have compiled some common reasons and troubleshooting tips at: 193s E 193s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 193s E 193s E Please note and check the following: 193s E 193s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 193s E * The NumPy version is: "1.26.4" 193s E 193s E and make sure that they are the versions you expect. 193s E Please carefully study the documentation linked above for further help. 193s E 193s E Original error was: No module named 'numpy.core._multiarray_umath' 193s 193s The above exception was the direct cause of the following exception: 193s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 193s return _bootstrap._gcd_import(name[level:], package, level) 193s test/test_subsampling.py:13: in 193s import numpy as np 193s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 193s raise ImportError(msg) from e 193s E ImportError: Error importing numpy: you should not try to import numpy from 193s E its source directory; please exit the numpy source tree, and relaunch 193s E your python interpreter from there. 193s _______________ ERROR collecting test/test_tangential_complex.py _______________ 193s ImportError while importing test module '/tmp/autopkgtest.TUVrVC/autopkgtest_tmp/test/test_tangential_complex.py'. 193s Hint: make sure your test modules/packages have valid Python names. 193s Traceback: 193s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 193s return _bootstrap._gcd_import(name[level:], package, level) 193s test/test_tangential_complex.py:11: in 193s from gudhi import TangentialComplex, SimplexTree 193s E ImportError: cannot import name 'TangentialComplex' from 'gudhi' (/usr/lib/python3/dist-packages/gudhi/__init__.py) 193s ___________________ ERROR collecting test/test_time_delay.py ___________________ 193s ImportError while importing test module '/tmp/autopkgtest.TUVrVC/autopkgtest_tmp/test/test_time_delay.py'. 193s Hint: make sure your test modules/packages have valid Python names. 193s Traceback: 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 193s from . import multiarray 193s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 193s from . import overrides 193s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 193s from numpy.core._multiarray_umath import ( 193s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 193s 193s During handling of the above exception, another exception occurred: 193s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 193s from numpy.__config__ import show as show_config 193s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 193s from numpy.core._multiarray_umath import ( 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 193s raise ImportError(msg) 193s E ImportError: 193s E 193s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 193s E 193s E Importing the numpy C-extensions failed. This error can happen for 193s E many reasons, often due to issues with your setup or how NumPy was 193s E installed. 193s E 193s E We have compiled some common reasons and troubleshooting tips at: 193s E 193s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 193s E 193s E Please note and check the following: 193s E 193s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 193s E * The NumPy version is: "1.26.4" 193s E 193s E and make sure that they are the versions you expect. 193s E Please carefully study the documentation linked above for further help. 193s E 193s E Original error was: No module named 'numpy.core._multiarray_umath' 193s 193s The above exception was the direct cause of the following exception: 193s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 193s return _bootstrap._gcd_import(name[level:], package, level) 193s test/test_time_delay.py:1: in 193s from gudhi.point_cloud.timedelay import TimeDelayEmbedding 193s /usr/lib/python3/dist-packages/gudhi/point_cloud/timedelay.py:9: in 193s import numpy as np 193s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 193s raise ImportError(msg) from e 193s E ImportError: Error importing numpy: you should not try to import numpy from 193s E its source directory; please exit the numpy source tree, and relaunch 193s E your python interpreter from there. 193s _____________________ ERROR collecting test/test_tomato.py _____________________ 193s ImportError while importing test module '/tmp/autopkgtest.TUVrVC/autopkgtest_tmp/test/test_tomato.py'. 193s Hint: make sure your test modules/packages have valid Python names. 193s Traceback: 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 193s from . import multiarray 193s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 193s from . import overrides 193s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 193s from numpy.core._multiarray_umath import ( 193s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 193s 193s During handling of the above exception, another exception occurred: 193s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 193s from numpy.__config__ import show as show_config 193s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 193s from numpy.core._multiarray_umath import ( 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 193s raise ImportError(msg) 193s E ImportError: 193s E 193s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 193s E 193s E Importing the numpy C-extensions failed. This error can happen for 193s E many reasons, often due to issues with your setup or how NumPy was 193s E installed. 193s E 193s E We have compiled some common reasons and troubleshooting tips at: 193s E 193s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 193s E 193s E Please note and check the following: 193s E 193s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 193s E * The NumPy version is: "1.26.4" 193s E 193s E and make sure that they are the versions you expect. 193s E Please carefully study the documentation linked above for further help. 193s E 193s E Original error was: No module named 'numpy.core._multiarray_umath' 193s 193s The above exception was the direct cause of the following exception: 193s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 193s return _bootstrap._gcd_import(name[level:], package, level) 193s test/test_tomato.py:11: in 193s from gudhi.clustering.tomato import Tomato 193s /usr/lib/python3/dist-packages/gudhi/clustering/tomato.py:10: in 193s import numpy 193s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 193s raise ImportError(msg) from e 193s E ImportError: Error importing numpy: you should not try to import numpy from 193s E its source directory; please exit the numpy source tree, and relaunch 193s E your python interpreter from there. 193s _____________ ERROR collecting test/test_wasserstein_barycenter.py _____________ 193s ImportError while importing test module '/tmp/autopkgtest.TUVrVC/autopkgtest_tmp/test/test_wasserstein_barycenter.py'. 193s Hint: make sure your test modules/packages have valid Python names. 193s Traceback: 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 193s from . import multiarray 193s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 193s from . import overrides 193s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 193s from numpy.core._multiarray_umath import ( 193s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 193s 193s During handling of the above exception, another exception occurred: 193s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 193s from numpy.__config__ import show as show_config 193s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 193s from numpy.core._multiarray_umath import ( 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 193s raise ImportError(msg) 193s E ImportError: 193s E 193s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 193s E 193s E Importing the numpy C-extensions failed. This error can happen for 193s E many reasons, often due to issues with your setup or how NumPy was 193s E installed. 193s E 193s E We have compiled some common reasons and troubleshooting tips at: 193s E 193s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 193s E 193s E Please note and check the following: 193s E 193s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 193s E * The NumPy version is: "1.26.4" 193s E 193s E and make sure that they are the versions you expect. 193s E Please carefully study the documentation linked above for further help. 193s E 193s E Original error was: No module named 'numpy.core._multiarray_umath' 193s 193s The above exception was the direct cause of the following exception: 193s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 193s return _bootstrap._gcd_import(name[level:], package, level) 193s test/test_wasserstein_barycenter.py:1: in 193s from gudhi.wasserstein.barycenter import lagrangian_barycenter 193s /usr/lib/python3/dist-packages/gudhi/wasserstein/__init__.py:1: in 193s from .wasserstein import wasserstein_distance 193s /usr/lib/python3/dist-packages/gudhi/wasserstein/wasserstein.py:10: in 193s import numpy as np 193s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 193s raise ImportError(msg) from e 193s E ImportError: Error importing numpy: you should not try to import numpy from 193s E its source directory; please exit the numpy source tree, and relaunch 193s E your python interpreter from there. 193s ______________ ERROR collecting test/test_wasserstein_distance.py ______________ 193s ImportError while importing test module '/tmp/autopkgtest.TUVrVC/autopkgtest_tmp/test/test_wasserstein_distance.py'. 193s Hint: make sure your test modules/packages have valid Python names. 193s Traceback: 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 193s from . import multiarray 193s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 193s from . import overrides 193s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 193s from numpy.core._multiarray_umath import ( 193s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 193s 193s During handling of the above exception, another exception occurred: 193s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 193s from numpy.__config__ import show as show_config 193s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 193s from numpy.core._multiarray_umath import ( 193s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 193s raise ImportError(msg) 193s E ImportError: 193s E 193s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 193s E 193s E Importing the numpy C-extensions failed. This error can happen for 193s E many reasons, often due to issues with your setup or how NumPy was 193s E installed. 193s E 193s E We have compiled some common reasons and troubleshooting tips at: 193s E 193s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 193s E 193s E Please note and check the following: 193s E 193s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 193s E * The NumPy version is: "1.26.4" 193s E 193s E and make sure that they are the versions you expect. 193s E Please carefully study the documentation linked above for further help. 193s E 193s E Original error was: No module named 'numpy.core._multiarray_umath' 193s 193s The above exception was the direct cause of the following exception: 193s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 193s return _bootstrap._gcd_import(name[level:], package, level) 193s test/test_wasserstein_distance.py:12: in 193s from gudhi.wasserstein.wasserstein import _proj_on_diag, _finite_part, _handle_essential_parts, _get_essential_parts 193s /usr/lib/python3/dist-packages/gudhi/wasserstein/__init__.py:1: in 193s from .wasserstein import wasserstein_distance 193s /usr/lib/python3/dist-packages/gudhi/wasserstein/wasserstein.py:10: in 193s import numpy as np 193s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 193s raise ImportError(msg) from e 193s E ImportError: Error importing numpy: you should not try to import numpy from 193s E its source directory; please exit the numpy source tree, and relaunch 193s E your python interpreter from there. 193s _____________ ERROR collecting test/test_weighted_rips_complex.py ______________ 193s ImportError while importing test module '/tmp/autopkgtest.TUVrVC/autopkgtest_tmp/test/test_weighted_rips_complex.py'. 193s Hint: make sure your test modules/packages have valid Python names. 193s Traceback: 193s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 193s return _bootstrap._gcd_import(name[level:], package, level) 193s test/test_weighted_rips_complex.py:11: in 193s from gudhi.weighted_rips_complex import WeightedRipsComplex 193s /usr/lib/python3/dist-packages/gudhi/weighted_rips_complex.py:10: in 193s from gudhi import SimplexTree 193s E ImportError: cannot import name 'SimplexTree' from 'gudhi' (/usr/lib/python3/dist-packages/gudhi/__init__.py) 193s ________________ ERROR collecting test/test_witness_complex.py _________________ 193s ImportError while importing test module '/tmp/autopkgtest.TUVrVC/autopkgtest_tmp/test/test_witness_complex.py'. 193s Hint: make sure your test modules/packages have valid Python names. 193s Traceback: 193s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 193s return _bootstrap._gcd_import(name[level:], package, level) 193s test/test_witness_complex.py:11: in 193s from gudhi import WitnessComplex, StrongWitnessComplex, SimplexTree 193s E ImportError: cannot import name 'WitnessComplex' from 'gudhi' (/usr/lib/python3/dist-packages/gudhi/__init__.py) 193s =========================== short test summary info ============================ 193s ERROR test/test_alpha_complex.py 193s ERROR test/test_betti_curve_representations.py 193s ERROR test/test_bottleneck_distance.py 193s ERROR test/test_collapse_edges.py 193s ERROR test/test_cover_complex.py 193s ERROR test/test_cubical_complex.py 193s ERROR test/test_datasets_generators.py 193s ERROR test/test_dtm_rips_complex.py 193s ERROR test/test_knn.py 193s ERROR test/test_off.py 193s ERROR test/test_persistence_graphical_tools.py 193s ERROR test/test_reader_utils.py 193s ERROR test/test_remote_datasets.py 193s ERROR test/test_representations.py 193s ERROR test/test_representations_preprocessing.py 193s ERROR test/test_rips_complex.py 193s ERROR test/test_simplex_generators.py 193s ERROR test/test_simplex_tree.py 193s ERROR test/test_simplex_tree_serialization.py 193s ERROR test/test_sklearn_cubical_persistence.py 193s ERROR test/test_sklearn_rips_persistence.py 193s ERROR test/test_subsampling.py 193s ERROR test/test_tangential_complex.py 193s ERROR test/test_time_delay.py 193s ERROR test/test_tomato.py 193s ERROR test/test_wasserstein_barycenter.py 193s ERROR test/test_wasserstein_distance.py 193s ERROR test/test_weighted_rips_complex.py 193s ERROR test/test_witness_complex.py 193s !!!!!!!!!!!!!!!!!!! Interrupted: 29 errors during collection !!!!!!!!!!!!!!!!!!! 193s ============================== 29 errors in 1.43s ============================== 193s autopkgtest [09:23:00]: test python-upstream.sh: -----------------------] 194s autopkgtest [09:23:01]: test python-upstream.sh: - - - - - - - - - - results - - - - - - - - - - 194s python-upstream.sh FAIL non-zero exit status 2 194s autopkgtest [09:23:01]: @@@@@@@@@@@@@@@@@@@@ summary 194s python-upstream.sh FAIL non-zero exit status 2 207s nova [W] Skipping flock in bos03-arm64 207s Creating nova instance adt-plucky-arm64-gudhi-20241113-091947-juju-7f2275-prod-proposed-migration-environment-20-f12a53ad-3c7f-4d89-a844-bed71bfb1bd5 from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)...