1s autopkgtest [09:07:21]: starting date and time: 2024-11-30 09:07:21+0000 1s autopkgtest [09:07:21]: git checkout: be626eda Fix armhf LXD image generation for plucky 1s autopkgtest [09:07:21]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.jjwx0w7j/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:fftw3,src:openmpi --apt-upgrade glam2 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=fftw3/3.3.10-2fakesync1build1 openmpi/5.0.6-2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-28.secgroup --name adt-plucky-arm64-glam2-20241130-090720-juju-7f2275-prod-proposed-migration-environment-15-8e8506e2-fcd7-4e30-9588-e416fcf4309d --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 144s autopkgtest [09:09:44]: testbed dpkg architecture: arm64 144s autopkgtest [09:09:44]: testbed apt version: 2.9.14ubuntu1 145s autopkgtest [09:09:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup 145s autopkgtest [09:09:45]: testbed release detected to be: None 146s autopkgtest [09:09:46]: updating testbed package index (apt update) 146s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 146s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 146s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 147s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 147s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.1 kB] 147s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 147s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [788 kB] 147s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [64.6 kB] 147s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [114 kB] 147s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [58.2 kB] 147s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [666 kB] 147s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [21.2 kB] 147s Fetched 1810 kB in 1s (1889 kB/s) 148s Reading package lists... 149s Reading package lists... 149s Building dependency tree... 149s Reading state information... 150s Calculating upgrade... 150s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 151s Reading package lists... 151s Building dependency tree... 151s Reading state information... 152s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 152s autopkgtest [09:09:52]: upgrading testbed (apt dist-upgrade and autopurge) 152s Reading package lists... 153s Building dependency tree... 153s Reading state information... 154s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 154s Starting 2 pkgProblemResolver with broken count: 0 154s Done 156s Entering ResolveByKeep 156s 157s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 158s Reading package lists... 158s Building dependency tree... 158s Reading state information... 159s Starting pkgProblemResolver with broken count: 0 159s Starting 2 pkgProblemResolver with broken count: 0 159s Done 160s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 163s autopkgtest [09:10:03]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 163s autopkgtest [09:10:03]: @@@@@@@@@@@@@@@@@@@@ apt-source glam2 165s Get:1 http://ftpmaster.internal/ubuntu plucky/universe glam2 1064-9 (dsc) [2006 B] 165s Get:2 http://ftpmaster.internal/ubuntu plucky/universe glam2 1064-9 (tar) [238 kB] 165s Get:3 http://ftpmaster.internal/ubuntu plucky/universe glam2 1064-9 (diff) [12.6 kB] 165s gpgv: Signature made Mon Dec 7 21:41:36 2020 UTC 165s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 165s gpgv: issuer "tille@debian.org" 165s gpgv: Can't check signature: No public key 165s dpkg-source: warning: cannot verify inline signature for ./glam2_1064-9.dsc: no acceptable signature found 165s autopkgtest [09:10:05]: testing package glam2 version 1064-9 166s autopkgtest [09:10:06]: build not needed 166s autopkgtest [09:10:06]: test check-no-args: preparing testbed 166s Reading package lists... 167s Building dependency tree... 167s Reading state information... 167s Starting pkgProblemResolver with broken count: 0 168s Starting 2 pkgProblemResolver with broken count: 0 168s Done 169s The following NEW packages will be installed: 169s glam2 libfftw3-double3 libgomp1 169s 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. 169s Need to get 765 kB of archives. 169s After this operation, 1893 kB of additional disk space will be used. 169s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB] 169s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libfftw3-double3 arm64 3.3.10-2fakesync1build1 [392 kB] 170s Get:3 http://ftpmaster.internal/ubuntu plucky/universe arm64 glam2 arm64 1064-9 [228 kB] 170s Fetched 765 kB in 1s (1379 kB/s) 170s Selecting previously unselected package libgomp1:arm64. 170s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80333 files and directories currently installed.) 170s Preparing to unpack .../libgomp1_14.2.0-8ubuntu1_arm64.deb ... 170s Unpacking libgomp1:arm64 (14.2.0-8ubuntu1) ... 170s Selecting previously unselected package libfftw3-double3:arm64. 171s Preparing to unpack .../libfftw3-double3_3.3.10-2fakesync1build1_arm64.deb ... 171s Unpacking libfftw3-double3:arm64 (3.3.10-2fakesync1build1) ... 171s Selecting previously unselected package glam2. 171s Preparing to unpack .../glam2_1064-9_arm64.deb ... 171s Unpacking glam2 (1064-9) ... 171s Setting up libgomp1:arm64 (14.2.0-8ubuntu1) ... 171s Setting up libfftw3-double3:arm64 (3.3.10-2fakesync1build1) ... 171s Setting up glam2 (1064-9) ... 171s Processing triggers for man-db (2.13.0-1) ... 171s Processing triggers for libc-bin (2.40-1ubuntu3) ... 172s autopkgtest [09:10:12]: test check-no-args: [----------------------- 173s Usage: glam2 [options] alphabet my_seqs.fa 173s Alphabets: p = proteins, n = nucleotides, other = alphabet file 173s Options (default settings): 173s -h: show all options and their default settings 173s -o: output file (stdout) 173s -r: number of alignment runs (10) 173s -n: end each run after this many iterations without improvement (10000) 173s -2: examine both strands - forward and reverse complement 173s -z: minimum number of sequences in the alignment (2) 173s -a: minimum number of aligned columns (2) 173s -b: maximum number of aligned columns (50) 173s -w: initial number of aligned columns (20) 173s -d: Dirichlet mixture file 173s -D: deletion pseudocount (0.1) 173s -E: no-deletion pseudocount (2.0) 173s -I: insertion pseudocount (0.02) 173s -J: no-insertion pseudocount (1.0) 173s -q: weight for generic versus sequence-set-specific residue abundances (1e+99) 173s -t: initial temperature (1.2) 173s -c: cooling factor per n iterations (1.44) 173s -u: temperature lower bound (0.1) 173s -p: print progress information at each iteration 173s -m: column-sampling moves per site-sampling move (1.0) 173s -x: site sampling algorithm: 0=FAST 1=SLOW 2=FFT (0) 173s -s: seed for pseudo-random numbers (1) 173s SUCCESS: Help text is there! 173s autopkgtest [09:10:13]: test check-no-args: -----------------------] 174s autopkgtest [09:10:14]: test check-no-args: - - - - - - - - - - results - - - - - - - - - - 174s check-no-args PASS 174s autopkgtest [09:10:14]: test run-unit-test: preparing testbed 174s Reading package lists... 175s Building dependency tree... 175s Reading state information... 175s Starting pkgProblemResolver with broken count: 0 175s Starting 2 pkgProblemResolver with broken count: 0 175s Done 177s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 178s autopkgtest [09:10:18]: test run-unit-test: [----------------------- 178s Run 1... 12350 iterations 179s Run 2... 17270 iterations 180s Run 3... 19781 iterations 181s Run 4... 12220 iterations 182s Run 5... 18950 iterations 183s Run 6... 15650 iterations 185s Run 7... 31104 iterations 187s Run 8... 21854 iterations 187s Run 9... 11813 iterations 188s Run 10... 11182 iterations 188s 188s GLAM2: Gapped Local Alignment of Motifs 188s Version 1064 188s 188s glam2 p lipocalin.s 188s Sequences: 5 188s Greatest sequence length: 189 188s Residue counts: A=65 C=26 D=62 E=70 F=39 G=52 H=23 I=43 K=78 L=79 M=16 N=48 P=29 Q=26 R=28 S=53 T=43 V=63 W=15 Y=45 x=0 188s 188s Score: 80.3660 Columns: 20 Sequences: 5 188s 188s ******************** 188s ICYA_MANSE 13 KPVNDFDLSAFAGAWHEIAK 32 + 33.3 188s LACB_BOVIN 21 QTMKGLDIQKVAGTWYSLAM 40 + 18.8 188s BBP_PIEBR 12 KPVDNFDWSNYHGKWWEVAK 31 + 27.9 188s RETB_BOVIN 10 RVKENFDKARFAGTWYAMAK 29 + 25.5 188s MUP2_MOUSE 23 STGRNFNVEKINGEWHTIIL 42 + 13.4 188s 188s KPVDNFDISKFAGTWHEIAK 188s QTGEDLNKAAIH A YALIL 188s RVKKG LENVN E WSM M 188s S MN VQRY K TV 188s R W 188s 188s A C D E F G H I K L M N P Q R S T V W Y Del Ins Score 188s 0 0 0 0 0 0 0 0 2 0 0 0 0 1 1 1 0 0 0 0 0 1.51 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 2 1 0 0 0 1.06 188s 0 -0.0655 188s 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 2 0 0 0 -2.00 188s 0 -0.0655 188s 0 0 1 1 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0.233 188s 0 -0.0655 188s 0 0 1 0 0 1 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 4.91 188s 0 -0.0655 188s 0 0 0 0 4 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 9.87 188s 0 -0.0655 188s 0 0 4 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 9.08 188s 0 -0.0655 188s 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 1 1 0 0 -1.61 188s 0 -0.0655 188s 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 -0.0557 188s 0 -0.0655 188s 1 0 0 0 0 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 0 0.836 188s 0 -0.0655 188s 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 2.40 188s 0 -0.0655 188s 3 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1.35 188s 0 -0.0655 188s 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12.9 188s 0 -0.0655 188s 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0.355 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 22.5 188s 0 -0.0655 188s 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 2 0 7.34 188s 0 -0.0655 188s 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 -0.00544 188s 0 -0.0655 188s 0 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 0 1 0 0 0 4.05 188s 0 -0.0655 188s 4 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 5.12 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 3 1 1 0 0 0 0 0 0 0 0 0 0 1.70 188s 188s Score: 80.3660 Columns: 20 Sequences: 5 188s 188s ******************** 188s ICYA_MANSE 13 KPVNDFDLSAFAGAWHEIAK 32 + 33.3 188s LACB_BOVIN 21 QTMKGLDIQKVAGTWYSLAM 40 + 18.8 188s BBP_PIEBR 12 KPVDNFDWSNYHGKWWEVAK 31 + 27.9 188s RETB_BOVIN 10 RVKENFDKARFAGTWYAMAK 29 + 25.5 188s MUP2_MOUSE 23 STGRNFNVEKINGEWHTIIL 42 + 13.4 188s 188s KPVDNFDISKFAGTWHEIAK 188s QTGEDLNKAAIH A YALIL 188s RVKKG LENVN E WSM M 188s S MN VQRY K TV 188s R W 188s 188s A C D E F G H I K L M N P Q R S T V W Y Del Ins Score 188s 0 0 0 0 0 0 0 0 2 0 0 0 0 1 1 1 0 0 0 0 0 1.51 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 2 1 0 0 0 1.06 188s 0 -0.0655 188s 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 2 0 0 0 -2.00 188s 0 -0.0655 188s 0 0 1 1 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0.233 188s 0 -0.0655 188s 0 0 1 0 0 1 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 4.91 188s 0 -0.0655 188s 0 0 0 0 4 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 9.87 188s 0 -0.0655 188s 0 0 4 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 9.08 188s 0 -0.0655 188s 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 1 1 0 0 -1.61 188s 0 -0.0655 188s 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 -0.0557 188s 0 -0.0655 188s 1 0 0 0 0 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 0 0.836 188s 0 -0.0655 188s 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 2.40 188s 0 -0.0655 188s 3 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1.35 188s 0 -0.0655 188s 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12.9 188s 0 -0.0655 188s 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0.355 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 22.5 188s 0 -0.0655 188s 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 2 0 7.34 188s 0 -0.0655 188s 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 -0.00544 188s 0 -0.0655 188s 0 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 0 1 0 0 0 4.05 188s 0 -0.0655 188s 4 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 5.12 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 3 1 1 0 0 0 0 0 0 0 0 0 0 1.70 188s 188s Score: 80.3660 Columns: 20 Sequences: 5 188s 188s ******************** 188s ICYA_MANSE 13 KPVNDFDLSAFAGAWHEIAK 32 + 33.3 188s LACB_BOVIN 21 QTMKGLDIQKVAGTWYSLAM 40 + 18.8 188s BBP_PIEBR 12 KPVDNFDWSNYHGKWWEVAK 31 + 27.9 188s RETB_BOVIN 10 RVKENFDKARFAGTWYAMAK 29 + 25.5 188s MUP2_MOUSE 23 STGRNFNVEKINGEWHTIIL 42 + 13.4 188s 188s KPVDNFDISKFAGTWHEIAK 188s QTGEDLNKAAIH A YALIL 188s RVKKG LENVN E WSM M 188s S MN VQRY K TV 188s R W 188s 188s A C D E F G H I K L M N P Q R S T V W Y Del Ins Score 188s 0 0 0 0 0 0 0 0 2 0 0 0 0 1 1 1 0 0 0 0 0 1.51 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 2 1 0 0 0 1.06 188s 0 -0.0655 188s 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 2 0 0 0 -2.00 188s 0 -0.0655 188s 0 0 1 1 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0.233 188s 0 -0.0655 188s 0 0 1 0 0 1 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 4.91 188s 0 -0.0655 188s 0 0 0 0 4 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 9.87 188s 0 -0.0655 188s 0 0 4 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 9.08 188s 0 -0.0655 188s 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 1 1 0 0 -1.61 188s 0 -0.0655 188s 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 -0.0557 188s 0 -0.0655 188s 1 0 0 0 0 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 0 0.836 188s 0 -0.0655 188s 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 2.40 188s 0 -0.0655 188s 3 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1.35 188s 0 -0.0655 188s 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12.9 188s 0 -0.0655 188s 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0.355 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 22.5 188s 0 -0.0655 188s 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 2 0 7.34 188s 0 -0.0655 188s 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 -0.00544 188s 0 -0.0655 188s 0 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 0 1 0 0 0 4.05 188s 0 -0.0655 188s 4 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 5.12 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 3 1 1 0 0 0 0 0 0 0 0 0 0 1.70 188s 188s Score: 77.3362 Columns: 21 Sequences: 5 188s 188s ********************* 188s ICYA_MANSE 100 NLVPWVLATDYKNYAINYNCD 120 + 37.8 188s LACB_BOVIN 106 NKVL.VLDTDYKKYLLFCMEN 125 + 20.1 188s BBP_PIEBR 97 NVFN.VLSTDNKNYIIGYYCK 116 + 27.2 188s RETB_BOVIN 101 NDDHWIIDTDYETFAVQYSCR 121 + 26.7 188s MUP2_MOUSE 106 NTFT.IPKTDYDNFLMAHLIN 125 + 18.6 188s 188s NDFHWVLDTDYKNYAIAYLCN 188s KVL IIA NDKFLLFCMED 188s LDN PK ET IMGHNIK 188s T P S VN S R 188s V T Q Y 188s 188s A C D E F G H I K L M N P Q R S T V W Y Del Ins Score 188s 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 14.2 188s 0 -0.0655 188s 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 -3.28 188s 0 -0.0655 188s 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0.278 188s 0 -0.0655 188s 0 0 0 0 0 0 1 0 0 1 0 1 1 0 0 0 1 0 0 0 0 -2.97 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 3 -4.19 188s 0 -0.0655 188s 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 3 0 0 0 8.67 188s 0 -0.0655 188s 0 0 0 0 0 0 0 1 0 3 0 0 1 0 0 0 0 0 0 0 0 1.58 188s 0 -0.0655 188s 1 0 2 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0.395 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 12.2 188s 0 -0.0655 188s 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13.9 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 4 0 8.89 188s 0 -0.0655 188s 0 0 1 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 4.07 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 1 0 0 3 0 0 0 0 1 0 0 0 0 3.33 188s 0 -0.0655 188s 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 11.1 188s 0 -0.0655 188s 2 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 2.04 188s 0 -0.0655 188s 0 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 0 1 0 0 0 4.05 188s 0 -0.0655 188s 1 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 -3.34 188s 0 -0.0655 188s 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 5.78 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 1 0 -2.50 188s 0 -0.0655 188s 0 3 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2.99 188s 0 -0.0655 188s 0 0 1 0 0 0 0 0 1 0 0 2 0 0 1 0 0 0 0 0 0 1.52 188s 188s Score: 77.3362 Columns: 21 Sequences: 5 188s 188s ********************* 188s ICYA_MANSE 100 NLVPWVLATDYKNYAINYNCD 120 + 37.8 188s LACB_BOVIN 106 NKVL.VLDTDYKKYLLFCMEN 125 + 20.1 188s BBP_PIEBR 97 NVFN.VLSTDNKNYIIGYYCK 116 + 27.2 188s RETB_BOVIN 101 NDDHWIIDTDYETFAVQYSCR 121 + 26.7 188s MUP2_MOUSE 106 NTFT.IPKTDYDNFLMAHLIN 125 + 18.6 188s 188s NDFHWVLDTDYKNYAIAYLCN 188s KVL IIA NDKFLLFCMED 188s LDN PK ET IMGHNIK 188s T P S VN S R 188s V T Q Y 188s 188s A C D E F G H I K L M N P Q R S T V W Y Del Ins Score 188s 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 14.2 188s 0 -0.0655 188s 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 -3.28 188s 0 -0.0655 188s 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0.278 188s 0 -0.0655 188s 0 0 0 0 0 0 1 0 0 1 0 1 1 0 0 0 1 0 0 0 0 -2.97 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 3 -4.19 188s 0 -0.0655 188s 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 3 0 0 0 8.67 188s 0 -0.0655 188s 0 0 0 0 0 0 0 1 0 3 0 0 1 0 0 0 0 0 0 0 0 1.58 188s 0 -0.0655 188s 1 0 2 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0.395 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 12.2 188s 0 -0.0655 188s 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13.9 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 4 0 8.89 188s 0 -0.0655 188s 0 0 1 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 4.07 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 1 0 0 3 0 0 0 0 1 0 0 0 0 3.33 188s 0 -0.0655 188s 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 11.1 188s 0 -0.0655 188s 2 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 2.04 188s 0 -0.0655 188s 0 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 0 1 0 0 0 4.05 188s 0 -0.0655 188s 1 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 -3.34 188s 0 -0.0655 188s 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 5.78 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 1 0 -2.50 188s 0 -0.0655 188s 0 3 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2.99 188s 0 -0.0655 188s 0 0 1 0 0 0 0 0 1 0 0 2 0 0 1 0 0 0 0 0 0 1.52 188s 188s Score: 77.3362 Columns: 21 Sequences: 5 188s 188s ********************* 188s ICYA_MANSE 100 NLVPWVLATDYKNYAINYNCD 120 + 37.8 188s LACB_BOVIN 106 NKVL.VLDTDYKKYLLFCMEN 125 + 20.1 188s BBP_PIEBR 97 NVFN.VLSTDNKNYIIGYYCK 116 + 27.2 188s RETB_BOVIN 101 NDDHWIIDTDYETFAVQYSCR 121 + 26.7 188s MUP2_MOUSE 106 NTFT.IPKTDYDNFLMAHLIN 125 + 18.6 188s 188s NDFHWVLDTDYKNYAIAYLCN 188s KVL IIA NDKFLLFCMED 188s LDN PK ET IMGHNIK 188s T P S VN S R 188s V T Q Y 188s 188s A C D E F G H I K L M N P Q R S T V W Y Del Ins Score 188s 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 14.2 188s 0 -0.0655 188s 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 -3.28 188s 0 -0.0655 188s 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0.278 188s 0 -0.0655 188s 0 0 0 0 0 0 1 0 0 1 0 1 1 0 0 0 1 0 0 0 0 -2.97 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 3 -4.19 188s 0 -0.0655 188s 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 3 0 0 0 8.67 188s 0 -0.0655 188s 0 0 0 0 0 0 0 1 0 3 0 0 1 0 0 0 0 0 0 0 0 1.58 188s 0 -0.0655 188s 1 0 2 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0.395 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 12.2 188s 0 -0.0655 188s 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13.9 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 4 0 8.89 188s 0 -0.0655 188s 0 0 1 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 4.07 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 1 0 0 3 0 0 0 0 1 0 0 0 0 3.33 188s 0 -0.0655 188s 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 11.1 188s 0 -0.0655 188s 2 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 2.04 188s 0 -0.0655 188s 0 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 0 1 0 0 0 4.05 188s 0 -0.0655 188s 1 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 -3.34 188s 0 -0.0655 188s 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 5.78 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 1 0 -2.50 188s 0 -0.0655 188s 0 3 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2.99 188s 0 -0.0655 188s 0 0 1 0 0 0 0 0 1 0 0 2 0 0 1 0 0 0 0 0 0 1.52 188s 188s Score: 77.3362 Columns: 21 Sequences: 5 188s 188s ********************* 188s ICYA_MANSE 100 NLVPWVLATDYKNYAINYNCD 120 + 37.8 188s LACB_BOVIN 106 NKVL.VLDTDYKKYLLFCMEN 125 + 20.1 188s BBP_PIEBR 97 NVFN.VLSTDNKNYIIGYYCK 116 + 27.2 188s RETB_BOVIN 101 NDDHWIIDTDYETFAVQYSCR 121 + 26.7 188s MUP2_MOUSE 106 NTFT.IPKTDYDNFLMAHLIN 125 + 18.6 188s 188s NDFHWVLDTDYKNYAIAYLCN 188s KVL IIA NDKFLLFCMED 188s LDN PK ET IMGHNIK 188s T P S VN S R 188s V T Q Y 188s 188s A C D E F G H I K L M N P Q R S T V W Y Del Ins Score 188s 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 14.2 188s 0 -0.0655 188s 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 -3.28 188s 0 -0.0655 188s 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0.278 188s 0 -0.0655 188s 0 0 0 0 0 0 1 0 0 1 0 1 1 0 0 0 1 0 0 0 0 -2.97 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 3 -4.19 188s 0 -0.0655 188s 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 3 0 0 0 8.67 188s 0 -0.0655 188s 0 0 0 0 0 0 0 1 0 3 0 0 1 0 0 0 0 0 0 0 0 1.58 188s 0 -0.0655 188s 1 0 2 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0.395 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 12.2 188s 0 -0.0655 188s 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13.9 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 4 0 8.89 188s 0 -0.0655 188s 0 0 1 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 4.07 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 1 0 0 3 0 0 0 0 1 0 0 0 0 3.33 188s 0 -0.0655 188s 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 11.1 188s 0 -0.0655 188s 2 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 2.04 188s 0 -0.0655 188s 0 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 0 1 0 0 0 4.05 188s 0 -0.0655 188s 1 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 -3.34 188s 0 -0.0655 188s 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 5.78 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 1 0 -2.50 188s 0 -0.0655 188s 0 3 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2.99 188s 0 -0.0655 188s 0 0 1 0 0 0 0 0 1 0 0 2 0 0 1 0 0 0 0 0 0 1.52 188s 188s Score: 75.7471 Columns: 26 Sequences: 5 188s 188s ************************** 188s ICYA_MANSE 100 NLVPWVLATDYKNYAINYNCDYHPDK 125 + 40.6 188s LACB_BOVIN 106 NKVL.VLDTDYKKYLLFCMENSAEPE 130 + 20.6 188s BBP_PIEBR 97 NVFN.VLSTDNKNYIIGYYCKYDEDK 121 + 32.0 188s RETB_BOVIN 101 NDDHWIIDTDYETFAVQYSCRLLNLD 126 + 20.6 188s MUP2_MOUSE 106 NTFT.IPKTDYDNFLMAHLINEKDGE 130 + 18.1 188s 188s NDFHWVLDTDYKNYAIAYLCNYAEDE 188s KVL IIA NDKFLLFCMEDEDDGK 188s LDN PK ET IMGHNIKLHNLD 188s T P S VN S RSKPP 188s V T Q Y L 188s 188s A C D E F G H I K L M N P Q R S T V W Y Del Ins Score 188s 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 14.2 188s 0 -0.0655 188s 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 -3.28 188s 0 -0.0655 188s 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0.278 188s 0 -0.0655 188s 0 0 0 0 0 0 1 0 0 1 0 1 1 0 0 0 1 0 0 0 0 -2.97 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 3 -4.19 188s 0 -0.0655 188s 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 3 0 0 0 8.67 188s 0 -0.0655 188s 0 0 0 0 0 0 0 1 0 3 0 0 1 0 0 0 0 0 0 0 0 1.58 188s 0 -0.0655 188s 1 0 2 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0.395 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 12.2 188s 0 -0.0655 188s 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13.9 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 4 0 8.89 188s 0 -0.0655 188s 0 0 1 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 4.07 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 1 0 0 3 0 0 0 0 1 0 0 0 0 3.33 188s 0 -0.0655 188s 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 11.1 188s 0 -0.0655 188s 2 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 2.04 188s 0 -0.0655 188s 0 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 0 1 0 0 0 4.05 188s 0 -0.0655 188s 1 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 -3.34 188s 0 -0.0655 188s 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 5.78 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 1 0 -2.50 188s 0 -0.0655 188s 0 3 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2.99 188s 0 -0.0655 188s 0 0 1 0 0 0 0 0 1 0 0 2 0 0 1 0 0 0 0 0 0 1.52 188s 0 -0.0655 188s 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 2 0 -0.975 188s 0 -0.0655 188s 1 0 1 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 -2.88 188s 0 -0.0655 188s 0 0 1 2 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1.18 188s 0 -0.0655 188s 0 0 2 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 -2.32 188s 0 -0.0655 188s 0 0 1 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 3.72 188s 188s Score: 75.7471 Columns: 26 Sequences: 5 188s 188s ************************** 188s ICYA_MANSE 100 NLVPWVLATDYKNYAINYNCDYHPDK 125 + 40.6 188s LACB_BOVIN 106 NKVL.VLDTDYKKYLLFCMENSAEPE 130 + 20.6 188s BBP_PIEBR 97 NVFN.VLSTDNKNYIIGYYCKYDEDK 121 + 32.0 188s RETB_BOVIN 101 NDDHWIIDTDYETFAVQYSCRLLNLD 126 + 20.6 188s MUP2_MOUSE 106 NTFT.IPKTDYDNFLMAHLINEKDGE 130 + 18.1 188s 188s NDFHWVLDTDYKNYAIAYLCNYAEDE 188s KVL IIA NDKFLLFCMEDEDDGK 188s LDN PK ET IMGHNIKLHNLD 188s T P S VN S RSKPP 188s V T Q Y L 188s 188s A C D E F G H I K L M N P Q R S T V W Y Del Ins Score 188s 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 14.2 188s 0 -0.0655 188s 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 -3.28 188s 0 -0.0655 188s 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0.278 188s 0 -0.0655 188s 0 0 0 0 0 0 1 0 0 1 0 1 1 0 0 0 1 0 0 0 0 -2.97 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 3 -4.19 188s 0 -0.0655 188s 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 3 0 0 0 8.67 188s 0 -0.0655 188s 0 0 0 0 0 0 0 1 0 3 0 0 1 0 0 0 0 0 0 0 0 1.58 188s 0 -0.0655 188s 1 0 2 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0.395 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 12.2 188s 0 -0.0655 188s 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13.9 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 4 0 8.89 188s 0 -0.0655 188s 0 0 1 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 4.07 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 1 0 0 3 0 0 0 0 1 0 0 0 0 3.33 188s 0 -0.0655 188s 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 11.1 188s Run 1... 0 -0.0655 188s 2 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 2.04 188s 0 -0.0655 188s 0 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 0 1 0 0 0 4.05 188s 0 -0.0655 188s 1 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 -3.34 188s 0 -0.0655 188s 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 5.78 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 1 0 -2.50 188s 0 -0.0655 188s 0 3 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2.99 188s 0 -0.0655 188s 0 0 1 0 0 0 0 0 1 0 0 2 0 0 1 0 0 0 0 0 0 1.52 188s 0 -0.0655 188s 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 2 0 -0.975 188s 0 -0.0655 188s 1 0 1 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 -2.88 188s 0 -0.0655 188s 0 0 1 2 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1.18 188s 0 -0.0655 188s 0 0 2 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 -2.32 188s 0 -0.0655 188s 0 0 1 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 3.72 188s 188s Score: 73.5314 Columns: 41 Sequences: 5 188s 188s ********.*******.......************************** 188s ICYA_MANSE 81 KYTKQGKY.VMTFK.FGQRVV..NLVPWVLATDYKNYAINYNCDYHPDK 125 + 38.9 188s LACB_BOVIN 91 KTKIPAVF.KIDALNE.......NKVL.VLDTDYKKYLLFCMENSAEPE 130 + 21.8 188s BBP_PIEBR 78 DSKIGKIYHKLTYGGVTKE....NVFN.VLSTDNKNYIIGYYCKYDEDK 121 + 32.8 188s RETB_BOVIN 79 DTEDPAKF.KMKYWGVASFLQKGNDDHWIIDTDYETFAVQYSCRLLNLD 126 + 34.1 188s MUP2_MOUSE 91 KTEKAGEY.SVTYDGF.......NTFT.IPKTDYDNFLMAHLINEKDGE 130 + 33.6 188s 188s KTEIPAKY KMTYDGF NDFHWVLDTDYKNYAIAYLCNYAEDE 188s DSKKAGEF SIDAGNV KVL IIA NDKFLLFCMEDEDDGK 188s YTDGKI VLKFK E LDN PK ET IMGHNIKLHNLD 188s Q V V L T P S VN S RSKPP 188s W V T Q Y L 188s 188s A C D E F G H I K L M N P Q R S T V W Y Del Ins Score 188s 0 0 2 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 5.22 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 1 0 2.46 188s 0 -0.0655 188s 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 2.94 188s 0 -0.0655 188s 0 0 1 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0.216 188s 0 -0.0655 188s 1 0 0 0 0 1 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 -1.06 188s 0 -0.0655 188s 2 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0.824 188s 0 -0.0655 188s 0 0 0 1 0 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 0 -0.808 188s 0 -0.0655 188s 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 11.1 188s 1 -8.30 188s 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 1 0 1 0 0 0 1.49 188s 0 -0.0655 188s 0 0 0 0 0 0 0 1 0 1 2 0 0 0 0 0 0 1 0 0 0 4.57 188s 0 -0.0655 188s 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 3 0 0 0 0 2.41 188s 0 -0.0655 188s 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 5.65 188s 0 -0.0655 188s 0 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 -4.16 188s 0 -0.0655 188s 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 -1.19 188s 0 -0.0655 188s 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0.743 188s 15 -23.5 188s 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 14.2 188s 0 -0.0655 188s 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 -3.28 188s 0 -0.0655 188s 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0.278 188s 0 -0.0655 188s 0 0 0 0 0 0 1 0 0 1 0 1 1 0 0 0 1 0 0 0 0 -2.97 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 3 -4.19 188s 0 -0.0655 188s 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 3 0 0 0 8.67 188s 0 -0.0655 188s 0 0 0 0 0 0 0 1 0 3 0 0 1 0 0 0 0 0 0 0 0 1.58 188s 0 -0.0655 188s 1 0 2 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0.395 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 12.2 188s 0 -0.0655 188s 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13.9 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 4 0 8.89 188s 0 -0.0655 188s 0 0 1 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 4.07 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 1 0 0 3 0 0 0 0 1 0 0 0 0 3.33 188s 0 -0.0655 188s 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 11.1 188s 0 -0.0655 188s 2 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 2.04 188s 0 -0.0655 188s 0 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 0 1 0 0 0 4.05 188s 0 -0.0655 188s 1 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 -3.34 188s 0 -0.0655 188s 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 5.78 188s 0 -0.0655 188s 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 1 0 -2.50 188s 0 -0.0655 188s 0 3 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2.99 188s 0 -0.0655 188s 0 0 1 0 0 0 0 0 1 0 0 2 0 0 1 0 0 0 0 0 0 1.52 188s 0 -0.0655 188s 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 2 0 -0.975 188s 0 -0.0655 188s 1 0 1 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 -2.88 188s 0 -0.0655 188s 0 0 1 2 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1.18 188s 0 -0.0655 188s 0 0 2 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 -2.32 188s 0 -0.0655 188s 0 0 1 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 3.72 188s 188s 4122 iterations 188s 188s GLAM2: Gapped Local Alignment of Motifs 188s Version 1064 188s 188s glam2 -r 1 -n 1000 p crp0.s 188s Sequences: 18 188s Greatest sequence length: 105 188s Residue counts: A=572 C=345 D=0 E=0 F=0 G=395 H=0 I=0 K=0 L=0 M=0 N=0 P=0 Q=0 R=0 S=0 T=578 V=0 W=0 Y=0 x=0 188s 188s Score: 1431.87 Columns: 46 Sequences: 18 188s 188s *********.......*****.................********...............********........***.........****..********* 188s ce1cg 31 GCGAGAATAG......CGCGTGGTG.............TGAAAGACTGTTTTTTTGATCGTTTTCACAAAAA.....TGGAA.......GTCC..ACAGTCTTG 101 + 95.1 188s ara 31 TCACGGCAGAAAAGTCCACATTGATTATT.........TGCACGGCG..............TCACACTT........TGCTA.......TGCC..ATAGCATTT 94 + 114. 188s bglr1 37 ATATAACTTTATAAA.TTCCTAAAAT............TACACAAA...............GTTAATAAC.......TGTG........AGCAT.GGTCATATT 96 + 99.8 188s crp 46 ACATTGATG.......TACTGCATG.............TATGCAAAGGACG..........TCACATTACCG.....TGCAG.......TACA..GTTGATAGC 105 + 109. 188s cya 1 ACGGTGCTA.......CACTTG................TATGTAGCGCATC..........TTTCTTTACGG.....TCA.........ATCA..GCAAGGTGT 55 + 109. 188s deop2 18 AGATCGCAT.......TACAGTGATGCAAACTTG....TAAGTAGA...............TTTCCTTAAT......TGTGATGTG...TATC..GAAGTGTGT 84 + 105. 188s gale 10 AAACGGCTAAA.....TTCTTG................TGTAAACGA..............TTCCACTAATTTAT..TCCA........TGTC..ACACTTTTC 66 + 117. 188s ilv 21 TATCTGCAA.......TTCAG.................TACAAAACGTGATCA........ACCCCTCAATTT....TCCCTT......TGCT..GAAAAATTT 80 + 112. 188s lac 16 AGTTAGCTCA......CTCAT.................TAGGCACCCCAGGCT........TTACACTTTA......TGC.........TTCCG.GCTCGTATG 72 + 111. 188s male 4 TTACCGCCAA......TTCTG.................TAACAGAGA..............TCACACAAAGCGACGGTGGGGCGTAGG.GGCAA.GGAGGATGG 68 + 95.1 188s malk 22 ACACGGCTT.......CTGTGAACTAAACCGAGGTCA.TGTAAGGAA..............TTTCGTGA........TGT.........TGCTT.GCAAAAATC 85 + 109. 188s malt 50 ACAGTGCAAA......TTCAGACACA............TAAAAAAAC..............GTCATCGCT.......TGC.........ATTA..GAAAGGTTT 103 + 107. 188s ompa 30 ACAAGACTTTTTT...TTCATA................TGCCTGACGGA............GTTCACACT.......TGTAAGTT....TTCA..ACTACGTTG 89 + 113. 188s tnaa 9 ACATTAAAA.......TTCTTACGTAATTTATAATCTTTAAAAAAAGCA............TTTAATAT........TGC.........TCCCC.GAACGATTG 75 + 109. 188s uxu1 32 AACCCAATTAGAA...TTCGGGATTGACATGTCT....TACCAAAAGGTAGAACTT.....ATACGCCA........TCTC........ATCC..GATGCAAGC 105 + 101. 188s pbr322 12 ATGCGGCAT.......CAGAGCAGATTG..........TACTGAGA...............GTGCACCATA......TGCGGTGTGAAATACC..GCACAGATG 75 + 108. 188s trn9cat 11 AGATCACTT.......CGCAGAA...............TAAATAAATCCTGGT........GTCCCTGT........TGA.........TACCGGGAAGCCCTG 67 + 107. 188s tdc 47 ATAACGATA.......CTCTGGAAAG............TATTGAAA...............GTTAATTTG.......TGAGT.......GGTC..GCACATATC 100 + 107. 188s 188s ACACGGCTA TTCAG TAAAAAAA TTTCACTA TGC TGCC GCAGAATTG 188s T TCAAAT CA TT GCGCGGC GCAA TAT CT ATTA AATCGGAGT 188s T T T C A ACT C 188s 188s A C D E F G H I K L M N P Q R S T V W Y Del Ins Score 188s 14 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 37.3 188s 0 -0.100 188s 3 8 0 0 0 3 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 32.9 188s 0 -0.100 188s 12 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 29.5 188s 0 -0.100 188s 3 7 0 0 0 2 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 31.9 188s 0 -0.100 188s 2 5 0 0 0 6 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 26.4 188s 0 -0.100 188s 6 0 0 0 0 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 40.1 188s 0 -0.100 188s 5 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 62.9 188s 0 -0.100 188s 6 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 0 0 0 0 34.9 188s 0 -0.100 188s 8 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 26.2 188s 27 -51.1 188s 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 52.5 188s 0 -0.100 188s 5 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 11 0 0 0 0 32.4 188s 0 -0.100 188s 0 16 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 75.8 188s 0 -0.100 188s 8 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 26.2 188s 0 -0.100 188s 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 38.4 188s 102 -82.2 188s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18 0 0 0 0 64.5 188s 0 -0.100 188s 13 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39.7 188s 0 -0.100 188s 6 6 0 0 0 1 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 31.2 188s 0 -0.100 188s 9 3 0 0 0 4 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 26.2 188s 0 -0.100 188s 8 4 0 0 0 2 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 26.9 188s 0 -0.100 188s 13 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39.7 188s 0 -0.100 188s 11 2 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33.5 188s 0 -0.100 188s 10 6 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39.7 188s 67 -71.8 188s 2 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 30.8 188s 0 -0.100 188s 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 0 0 0 0 49.3 188s 0 -0.100 188s 5 4 0 0 0 1 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 29.1 188s 0 -0.100 188s 4 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 66.8 188s 0 -0.100 188s 11 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 29.8 188s 0 -0.100 188s 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 0 0 0 0 54.3 188s 0 -0.100 188s 5 3 0 0 0 3 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 24.3 188s 0 -0.100 188s 11 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 33.0 188s 37 -57.9 188s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18 0 0 0 0 64.5 188s 0 -0.100 188s 0 4 0 0 0 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 47.7 188s 0 -0.100 188s 3 8 0 0 0 2 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 34.0 188s 42 -60.8 188s 4 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 11 0 0 0 0 31.4 188s 0 -0.100 188s 4 1 0 0 0 7 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 22.9 188s 0 -0.100 188s 0 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 68.5 188s 0 -0.100 188s 6 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 45.9 188s 7 -27.4 188s 4 0 0 0 0 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 43.6 188s 0 -0.100 188s 6 8 0 0 0 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 35.2 188s 0 -0.100 188s 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 39.1 188s 0 -0.100 188s 5 6 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35.3 188s 0 -0.100 188s 6 4 0 0 0 5 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 24.4 188s 0 -0.100 188s 6 2 0 0 0 5 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 22.2 188s 0 -0.100 188s 7 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 33.9 188s 0 -0.100 188s 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 13 0 0 0 0 40.8 188s 0 -0.100 188s 0 5 0 0 0 7 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 31.3 188s 188s PASS 189s autopkgtest [09:10:29]: test run-unit-test: -----------------------] 189s autopkgtest [09:10:29]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 189s run-unit-test PASS 190s autopkgtest [09:10:30]: @@@@@@@@@@@@@@@@@@@@ summary 190s check-no-args PASS 190s run-unit-test PASS 203s nova [W] Using flock in prodstack6-arm64 203s flock: timeout while waiting to get lock 203s Creating nova instance adt-plucky-arm64-glam2-20241130-090720-juju-7f2275-prod-proposed-migration-environment-15-8e8506e2-fcd7-4e30-9588-e416fcf4309d from image adt/ubuntu-plucky-arm64-server-20241130.img (UUID 5a199882-8d99-4e1d-af9c-ac9cb6ffd919)...