0s autopkgtest [10:43:08]: starting date and time: 2025-01-21 10:43:08+0000 0s autopkgtest [10:43:08]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [10:43:08]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.7hbhnvr2/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:libisal --apt-upgrade fastp --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=libisal/2.31.1-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-28.secgroup --name adt-plucky-arm64-fastp-20250121-104308-juju-7f2275-prod-proposed-migration-environment-20-3d88d21f-aa91-4b67-8c1f-3d20c0746d84 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 120s autopkgtest [10:45:08]: testbed dpkg architecture: arm64 120s autopkgtest [10:45:08]: testbed apt version: 2.9.18 121s autopkgtest [10:45:09]: @@@@@@@@@@@@@@@@@@@@ test bed setup 121s autopkgtest [10:45:09]: testbed release detected to be: None 122s autopkgtest [10:45:10]: updating testbed package index (apt update) 122s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 122s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 122s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 122s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 123s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [119 kB] 123s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9736 B] 123s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [791 kB] 123s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.6 kB] 123s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [232 kB] 123s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [62.6 kB] 123s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [868 kB] 123s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [9768 B] 123s Fetched 2179 kB in 1s (2199 kB/s) 124s Reading package lists... 125s Reading package lists... 126s Building dependency tree... 126s Reading state information... 127s Calculating upgrade... 127s The following packages will be upgraded: 127s binutils binutils-aarch64-linux-gnu binutils-common e2fsprogs e2fsprogs-l10n 127s gir1.2-glib-2.0 libbinutils libcom-err2 libctf-nobfd0 libctf0 libext2fs2t64 127s libglib2.0-0t64 libglib2.0-data libgprofng0 libpolkit-agent-1-0 127s libpolkit-gobject-1-0 libpython3.12-minimal libpython3.12-stdlib 127s libpython3.12t64 libselinux1 libsframe1 libss2 libwrap0 logsave publicsuffix 127s python3-attr python3-gi python3-jinja2 python3.12 python3.12-gdbm 127s python3.12-minimal 128s 31 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 128s Need to get 17.1 MB of archives. 128s After this operation, 175 kB of additional disk space will be used. 128s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 e2fsprogs-l10n all 1.47.2-1ubuntu1 [7030 B] 128s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 logsave arm64 1.47.2-1ubuntu1 [26.2 kB] 128s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libext2fs2t64 arm64 1.47.2-1ubuntu1 [231 kB] 128s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 e2fsprogs arm64 1.47.2-1ubuntu1 [608 kB] 128s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.12t64 arm64 3.12.8-5 [2314 kB] 128s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12 arm64 3.12.8-5 [667 kB] 128s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.12-stdlib arm64 3.12.8-5 [2052 kB] 128s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-minimal arm64 3.12.8-5 [2236 kB] 128s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.12-minimal arm64 3.12.8-5 [835 kB] 128s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libselinux1 arm64 3.7-3ubuntu2 [81.7 kB] 128s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libcom-err2 arm64 1.47.2-1ubuntu1 [26.4 kB] 128s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libss2 arm64 1.47.2-1ubuntu1 [17.6 kB] 128s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 gir1.2-glib-2.0 arm64 2.83.2-2 [184 kB] 128s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libglib2.0-0t64 arm64 2.83.2-2 [1568 kB] 128s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libglib2.0-data all 2.83.2-2 [52.7 kB] 128s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-gi arm64 3.50.0-4 [279 kB] 128s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 publicsuffix all 20250108.1153-0.1 [134 kB] 128s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-gdbm arm64 3.12.8-5 [30.3 kB] 128s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libgprofng0 arm64 2.43.50.20250108-1ubuntu1 [779 kB] 128s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libctf0 arm64 2.43.50.20250108-1ubuntu1 [99.0 kB] 128s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libctf-nobfd0 arm64 2.43.50.20250108-1ubuntu1 [102 kB] 128s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 binutils-aarch64-linux-gnu arm64 2.43.50.20250108-1ubuntu1 [3422 kB] 128s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 binutils arm64 2.43.50.20250108-1ubuntu1 [3248 B] 128s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libbinutils arm64 2.43.50.20250108-1ubuntu1 [782 kB] 129s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 binutils-common arm64 2.43.50.20250108-1ubuntu1 [245 kB] 129s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libsframe1 arm64 2.43.50.20250108-1ubuntu1 [14.4 kB] 129s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libpolkit-agent-1-0 arm64 126-2 [16.7 kB] 129s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libpolkit-gobject-1-0 arm64 126-2 [49.6 kB] 129s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libwrap0 arm64 7.6.q-35 [48.8 kB] 129s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-attr all 24.3.0-1 [50.5 kB] 129s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.3-2 [108 kB] 129s Fetched 17.1 MB in 1s (14.4 MB/s) 129s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80201 files and directories currently installed.) 129s Preparing to unpack .../e2fsprogs-l10n_1.47.2-1ubuntu1_all.deb ... 129s Unpacking e2fsprogs-l10n (1.47.2-1ubuntu1) over (1.47.1-1ubuntu1) ... 129s Preparing to unpack .../logsave_1.47.2-1ubuntu1_arm64.deb ... 129s Unpacking logsave (1.47.2-1ubuntu1) over (1.47.1-1ubuntu1) ... 130s Preparing to unpack .../libext2fs2t64_1.47.2-1ubuntu1_arm64.deb ... 130s Leaving 'diversion of /lib/aarch64-linux-gnu/libe2p.so.2 to /lib/aarch64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64' 130s Leaving 'diversion of /lib/aarch64-linux-gnu/libe2p.so.2.3 to /lib/aarch64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64' 130s Leaving 'diversion of /lib/aarch64-linux-gnu/libext2fs.so.2 to /lib/aarch64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64' 130s Leaving 'diversion of /lib/aarch64-linux-gnu/libext2fs.so.2.4 to /lib/aarch64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' 130s Unpacking libext2fs2t64:arm64 (1.47.2-1ubuntu1) over (1.47.1-1ubuntu1) ... 130s Setting up libext2fs2t64:arm64 (1.47.2-1ubuntu1) ... 130s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80201 files and directories currently installed.) 130s Preparing to unpack .../0-e2fsprogs_1.47.2-1ubuntu1_arm64.deb ... 130s Unpacking e2fsprogs (1.47.2-1ubuntu1) over (1.47.1-1ubuntu1) ... 130s Preparing to unpack .../1-libpython3.12t64_3.12.8-5_arm64.deb ... 130s Unpacking libpython3.12t64:arm64 (3.12.8-5) over (3.12.8-3) ... 130s Preparing to unpack .../2-python3.12_3.12.8-5_arm64.deb ... 130s Unpacking python3.12 (3.12.8-5) over (3.12.8-3) ... 130s Preparing to unpack .../3-libpython3.12-stdlib_3.12.8-5_arm64.deb ... 130s Unpacking libpython3.12-stdlib:arm64 (3.12.8-5) over (3.12.8-3) ... 130s Preparing to unpack .../4-python3.12-minimal_3.12.8-5_arm64.deb ... 130s Unpacking python3.12-minimal (3.12.8-5) over (3.12.8-3) ... 130s Preparing to unpack .../5-libpython3.12-minimal_3.12.8-5_arm64.deb ... 130s Unpacking libpython3.12-minimal:arm64 (3.12.8-5) over (3.12.8-3) ... 131s Preparing to unpack .../6-libselinux1_3.7-3ubuntu2_arm64.deb ... 131s Unpacking libselinux1:arm64 (3.7-3ubuntu2) over (3.7-3ubuntu1) ... 131s Setting up libselinux1:arm64 (3.7-3ubuntu2) ... 131s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80201 files and directories currently installed.) 131s Preparing to unpack .../00-libcom-err2_1.47.2-1ubuntu1_arm64.deb ... 131s Unpacking libcom-err2:arm64 (1.47.2-1ubuntu1) over (1.47.1-1ubuntu1) ... 131s Preparing to unpack .../01-libss2_1.47.2-1ubuntu1_arm64.deb ... 131s Unpacking libss2:arm64 (1.47.2-1ubuntu1) over (1.47.1-1ubuntu1) ... 131s Preparing to unpack .../02-gir1.2-glib-2.0_2.83.2-2_arm64.deb ... 131s Unpacking gir1.2-glib-2.0:arm64 (2.83.2-2) over (2.82.4-2) ... 131s Preparing to unpack .../03-libglib2.0-0t64_2.83.2-2_arm64.deb ... 131s Unpacking libglib2.0-0t64:arm64 (2.83.2-2) over (2.82.4-2) ... 131s Preparing to unpack .../04-libglib2.0-data_2.83.2-2_all.deb ... 131s Unpacking libglib2.0-data (2.83.2-2) over (2.82.4-2) ... 131s Preparing to unpack .../05-python3-gi_3.50.0-4_arm64.deb ... 131s Unpacking python3-gi (3.50.0-4) over (3.50.0-3build1) ... 131s Preparing to unpack .../06-publicsuffix_20250108.1153-0.1_all.deb ... 131s Unpacking publicsuffix (20250108.1153-0.1) over (20241206.1516-0.1) ... 131s Preparing to unpack .../07-python3.12-gdbm_3.12.8-5_arm64.deb ... 131s Unpacking python3.12-gdbm (3.12.8-5) over (3.12.8-3) ... 131s Preparing to unpack .../08-libgprofng0_2.43.50.20250108-1ubuntu1_arm64.deb ... 131s Unpacking libgprofng0:arm64 (2.43.50.20250108-1ubuntu1) over (2.43.50.20241230-1ubuntu1) ... 132s Preparing to unpack .../09-libctf0_2.43.50.20250108-1ubuntu1_arm64.deb ... 132s Unpacking libctf0:arm64 (2.43.50.20250108-1ubuntu1) over (2.43.50.20241230-1ubuntu1) ... 132s Preparing to unpack .../10-libctf-nobfd0_2.43.50.20250108-1ubuntu1_arm64.deb ... 132s Unpacking libctf-nobfd0:arm64 (2.43.50.20250108-1ubuntu1) over (2.43.50.20241230-1ubuntu1) ... 132s Preparing to unpack .../11-binutils-aarch64-linux-gnu_2.43.50.20250108-1ubuntu1_arm64.deb ... 132s Unpacking binutils-aarch64-linux-gnu (2.43.50.20250108-1ubuntu1) over (2.43.50.20241230-1ubuntu1) ... 132s Preparing to unpack .../12-binutils_2.43.50.20250108-1ubuntu1_arm64.deb ... 132s Unpacking binutils (2.43.50.20250108-1ubuntu1) over (2.43.50.20241230-1ubuntu1) ... 132s Preparing to unpack .../13-libbinutils_2.43.50.20250108-1ubuntu1_arm64.deb ... 132s Unpacking libbinutils:arm64 (2.43.50.20250108-1ubuntu1) over (2.43.50.20241230-1ubuntu1) ... 132s Preparing to unpack .../14-binutils-common_2.43.50.20250108-1ubuntu1_arm64.deb ... 132s Unpacking binutils-common:arm64 (2.43.50.20250108-1ubuntu1) over (2.43.50.20241230-1ubuntu1) ... 132s Preparing to unpack .../15-libsframe1_2.43.50.20250108-1ubuntu1_arm64.deb ... 132s Unpacking libsframe1:arm64 (2.43.50.20250108-1ubuntu1) over (2.43.50.20241230-1ubuntu1) ... 132s Preparing to unpack .../16-libpolkit-agent-1-0_126-2_arm64.deb ... 132s Unpacking libpolkit-agent-1-0:arm64 (126-2) over (125-2ubuntu1) ... 132s Preparing to unpack .../17-libpolkit-gobject-1-0_126-2_arm64.deb ... 132s Unpacking libpolkit-gobject-1-0:arm64 (126-2) over (125-2ubuntu1) ... 132s Preparing to unpack .../18-libwrap0_7.6.q-35_arm64.deb ... 132s Unpacking libwrap0:arm64 (7.6.q-35) over (7.6.q-34) ... 132s Preparing to unpack .../19-python3-attr_24.3.0-1_all.deb ... 132s Unpacking python3-attr (24.3.0-1) over (24.2.0-1) ... 133s Preparing to unpack .../20-python3-jinja2_3.1.3-2_all.deb ... 133s Unpacking python3-jinja2 (3.1.3-2) over (3.1.3-1.1) ... 133s Setting up python3-attr (24.3.0-1) ... 133s Setting up python3.12-gdbm (3.12.8-5) ... 133s Setting up libpython3.12-minimal:arm64 (3.12.8-5) ... 133s Setting up binutils-common:arm64 (2.43.50.20250108-1ubuntu1) ... 133s Installing new version of config file /etc/gprofng.rc ... 133s Setting up libctf-nobfd0:arm64 (2.43.50.20250108-1ubuntu1) ... 133s Setting up libcom-err2:arm64 (1.47.2-1ubuntu1) ... 133s Setting up libsframe1:arm64 (2.43.50.20250108-1ubuntu1) ... 133s Setting up python3-jinja2 (3.1.3-2) ... 133s Setting up libglib2.0-0t64:arm64 (2.83.2-2) ... 133s No schema files found: doing nothing. 133s Setting up libglib2.0-data (2.83.2-2) ... 133s Setting up libwrap0:arm64 (7.6.q-35) ... 133s Setting up libss2:arm64 (1.47.2-1ubuntu1) ... 133s Setting up gir1.2-glib-2.0:arm64 (2.83.2-2) ... 133s Setting up logsave (1.47.2-1ubuntu1) ... 133s Setting up libbinutils:arm64 (2.43.50.20250108-1ubuntu1) ... 133s Setting up publicsuffix (20250108.1153-0.1) ... 133s Setting up libpolkit-gobject-1-0:arm64 (126-2) ... 133s Setting up libctf0:arm64 (2.43.50.20250108-1ubuntu1) ... 133s Setting up python3.12-minimal (3.12.8-5) ... 134s Setting up libpython3.12-stdlib:arm64 (3.12.8-5) ... 134s Setting up python3.12 (3.12.8-5) ... 135s Setting up e2fsprogs (1.47.2-1ubuntu1) ... 135s update-initramfs: deferring update (trigger activated) 136s Setting up libpython3.12t64:arm64 (3.12.8-5) ... 136s Setting up libgprofng0:arm64 (2.43.50.20250108-1ubuntu1) ... 136s Setting up python3-gi (3.50.0-4) ... 136s Setting up libpolkit-agent-1-0:arm64 (126-2) ... 136s Setting up e2fsprogs-l10n (1.47.2-1ubuntu1) ... 136s Setting up binutils-aarch64-linux-gnu (2.43.50.20250108-1ubuntu1) ... 136s Setting up binutils (2.43.50.20250108-1ubuntu1) ... 136s Processing triggers for libc-bin (2.40-4ubuntu1) ... 136s Processing triggers for systemd (257-2ubuntu1) ... 136s Processing triggers for man-db (2.13.0-1) ... 137s Processing triggers for initramfs-tools (0.142ubuntu35) ... 137s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic 137s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 157s System running in EFI mode, skipping. 157s Reading package lists... 158s Building dependency tree... 158s Reading state information... 159s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 159s autopkgtest [10:45:47]: upgrading testbed (apt dist-upgrade and autopurge) 159s Reading package lists... 160s Building dependency tree... 160s Reading state information... 161s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 161s Starting 2 pkgProblemResolver with broken count: 0 161s Done 162s Entering ResolveByKeep 163s 164s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 164s Reading package lists... 165s Building dependency tree... 165s Reading state information... 165s Starting pkgProblemResolver with broken count: 0 165s Starting 2 pkgProblemResolver with broken count: 0 166s Done 166s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 167s autopkgtest [10:45:55]: rebooting testbed after setup commands that affected boot 190s autopkgtest [10:46:18]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 193s autopkgtest [10:46:21]: @@@@@@@@@@@@@@@@@@@@ apt-source fastp 195s Get:1 http://ftpmaster.internal/ubuntu plucky/universe fastp 0.23.4+dfsg-1 (dsc) [1993 B] 195s Get:2 http://ftpmaster.internal/ubuntu plucky/universe fastp 0.23.4+dfsg-1 (tar) [83.0 kB] 195s Get:3 http://ftpmaster.internal/ubuntu plucky/universe fastp 0.23.4+dfsg-1 (diff) [8504 B] 195s gpgv: Signature made Tue Jul 11 15:26:05 2023 UTC 195s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 195s gpgv: issuer "tille@debian.org" 195s gpgv: Can't check signature: No public key 195s dpkg-source: warning: cannot verify inline signature for ./fastp_0.23.4+dfsg-1.dsc: no acceptable signature found 195s autopkgtest [10:46:23]: testing package fastp version 0.23.4+dfsg-1 195s autopkgtest [10:46:23]: build not needed 196s autopkgtest [10:46:24]: test run-sample-analysis: preparing testbed 196s Reading package lists... 196s Building dependency tree... 196s Reading state information... 197s Starting pkgProblemResolver with broken count: 0 197s Starting 2 pkgProblemResolver with broken count: 0 197s Done 197s The following NEW packages will be installed: 197s fastp libdeflate0 libisal2 197s 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. 197s Need to get 283 kB of archives. 197s After this operation, 916 kB of additional disk space will be used. 197s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 198s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 libisal2 arm64 2.31.1-1 [87.9 kB] 198s Get:3 http://ftpmaster.internal/ubuntu plucky/universe arm64 fastp arm64 0.23.4+dfsg-1 [149 kB] 198s Fetched 283 kB in 0s (567 kB/s) 198s Selecting previously unselected package libdeflate0:arm64. 199s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80201 files and directories currently installed.) 199s Preparing to unpack .../libdeflate0_1.23-1_arm64.deb ... 199s Unpacking libdeflate0:arm64 (1.23-1) ... 199s Selecting previously unselected package libisal2. 199s Preparing to unpack .../libisal2_2.31.1-1_arm64.deb ... 199s Unpacking libisal2 (2.31.1-1) ... 199s Selecting previously unselected package fastp. 199s Preparing to unpack .../fastp_0.23.4+dfsg-1_arm64.deb ... 199s Unpacking fastp (0.23.4+dfsg-1) ... 199s Setting up libisal2 (2.31.1-1) ... 199s Setting up libdeflate0:arm64 (1.23-1) ... 199s Setting up fastp (0.23.4+dfsg-1) ... 199s Processing triggers for man-db (2.13.0-1) ... 199s Processing triggers for libc-bin (2.40-4ubuntu1) ... 201s autopkgtest [10:46:29]: test run-sample-analysis: [----------------------- 201s Detecting adapter sequence for read1... 201s No adapter detected for read1 201s 201s Read1 before filtering: 201s total reads: 9 201s total bases: 1208 201s Q20 bases: 1078(89.2384%) 201s Q30 bases: 1005(83.1954%) 201s 201s Read1 after filtering: 201s total reads: 8 201s total bases: 1208 201s Q20 bases: 1078(89.2384%) 201s Q30 bases: 1005(83.1954%) 201s 201s Filtering result: 201s reads passed filter: 8 201s reads failed due to low quality: 0 201s reads failed due to too many N: 0 201s reads failed due to too short: 1 201s reads with adapter trimmed: 0 201s bases trimmed due to adapters: 0 201s 201s Duplication rate (may be overestimated since this is SE data): 55.5556% 201s 201s JSON report: fastp.json 201s HTML report: fastp.html 201s 201s fastp -i R1.fq -o out.R1.fq 201s fastp v0.23.4, time used: 1 seconds 202s Read1 before filtering: 202s total reads: 9 202s total bases: 1208 202s Q20 bases: 1078(89.2384%) 202s Q30 bases: 1005(83.1954%) 202s 202s Read2 before filtering: 202s total reads: 9 202s total bases: 1359 202s Q20 bases: 1100(80.9419%) 202s Q30 bases: 959(70.5666%) 202s 202s Read1 after filtering: 202s total reads: 8 202s total bases: 1208 202s Q20 bases: 1078(89.2384%) 202s Q30 bases: 1005(83.1954%) 202s 202s Read2 after filtering: 202s total reads: 8 202s total bases: 1208 202s Q20 bases: 991(82.0364%) 202s Q30 bases: 874(72.351%) 202s 202s Filtering result: 202s reads passed filter: 16 202s reads failed due to low quality: 0 202s reads failed due to too many N: 0 202s reads failed due to too short: 2 202s reads with adapter trimmed: 0 202s bases trimmed due to adapters: 0 202s 202s Duplication rate: 55.5556% 202s 202s Insert size peak (evaluated by paired-end reads): 187 202s 202s JSON report: fastp.json 202s HTML report: fastp.html 202s 202s fastp -i R1.fq.gz -I R2.fq.gz -o out.R1.fq.gz -O out.R2.fq.gz 202s fastp v0.23.4, time used: 0 seconds 202s Detecting adapter sequence for read1... 202s No adapter detected for read1 202s 202s Read1 before filtering: 202s total reads: 9 202s total bases: 1359 202s Q20 bases: 1100(80.9419%) 202s Q30 bases: 959(70.5666%) 202s 202s Read1 after filtering: 202s total reads: 9 202s total bases: 1287 202s Q20 bases: 1032(80.1865%) 202s Q30 bases: 891(69.2308%) 202s 202s Filtering result: 202s reads passed filter: 9 202s reads failed due to low quality: 0 202s reads failed due to too many N: 0 202s reads failed due to too short: 0 202s reads with adapter trimmed: 0 202s bases trimmed due to adapters: 0 202s 202s Duplication rate (may be overestimated since this is SE data): 66.6667% 202s 202s JSON report: fastp.json 202s HTML report: fastp.html 202s 202s fastp -i R2.fq -o out.R2.fq -U --umi_loc=read1 --umi_len=8 202s fastp v0.23.4, time used: 0 seconds 202s autopkgtest [10:46:30]: test run-sample-analysis: -----------------------] 203s run-sample-analysis PASS 203s autopkgtest [10:46:31]: test run-sample-analysis: - - - - - - - - - - results - - - - - - - - - - 203s autopkgtest [10:46:31]: @@@@@@@@@@@@@@@@@@@@ summary 203s run-sample-analysis PASS 233s nova [W] Using flock in prodstack6-arm64 233s Creating nova instance adt-plucky-arm64-fastp-20250121-104308-juju-7f2275-prod-proposed-migration-environment-20-3d88d21f-aa91-4b67-8c1f-3d20c0746d84 from image adt/ubuntu-plucky-arm64-server-20250120.img (UUID 2289192e-755c-4ccc-8729-a2438b644539)... 233s nova [W] Timed out waiting for 2e728d1f-216e-429c-bfdb-dedbfcdc9b68 to get deleted.