0s autopkgtest [12:47:01]: starting date and time: 2025-02-21 12:47:01+0000
  0s autopkgtest [12:47:01]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [12:47:01]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.eht9ijq8/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:build-essential --apt-upgrade fast5 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=build-essential/12.12 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-3.secgroup --name adt-plucky-arm64-fast5-20250221-124701-juju-7f2275-prod-proposed-migration-environment-2-a5cf0ecc-5947-411e-82e4-e6de4cdfc34a --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 98s autopkgtest [12:48:39]: testbed dpkg architecture: arm64
 99s autopkgtest [12:48:40]: testbed apt version: 2.9.30ubuntu1
100s autopkgtest [12:48:41]: @@@@@@@@@@@@@@@@@@@@ test bed setup
100s autopkgtest [12:48:41]: testbed release detected to be: None
102s autopkgtest [12:48:43]: updating testbed package index (apt update)
102s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB]
102s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
103s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
103s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
103s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [90.3 kB]
103s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [719 kB]
103s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B]
103s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.8 kB]
103s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [132 kB]
103s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [7960 B]
103s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [677 kB]
103s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [10.7 kB]
103s Fetched 1765 kB in 1s (1501 kB/s)
104s Reading package lists...
105s Reading package lists...
106s Building dependency tree...
106s Reading state information...
107s Calculating upgrade...
107s Calculating upgrade...
108s The following packages will be upgraded:
108s   base-files cloud-init cloud-init-base gcc-14-base motd-news-config
108s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
108s Need to get 752 kB of archives.
108s After this operation, 19.5 kB of additional disk space will be used.
108s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 motd-news-config all 13.6ubuntu1 [5168 B]
108s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 base-files arm64 13.6ubuntu1 [75.6 kB]
108s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-base arm64 14.2.0-17ubuntu3 [53.6 kB]
108s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cloud-init-base all 25.1-0ubuntu1 [616 kB]
109s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cloud-init all 25.1-0ubuntu1 [2088 B]
109s Preconfiguring packages ...
109s Fetched 752 kB in 1s (1233 kB/s)
110s (Reading database ... 
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(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 116668 files and directories currently installed.)
110s Preparing to unpack .../motd-news-config_13.6ubuntu1_all.deb ...
110s Unpacking motd-news-config (13.6ubuntu1) over (13.5ubuntu3) ...
110s Preparing to unpack .../base-files_13.6ubuntu1_arm64.deb ...
110s Unpacking base-files (13.6ubuntu1) over (13.5ubuntu3) ...
110s Setting up base-files (13.6ubuntu1) ...
110s Updating /root/.profile to current default.
111s motd-news.service is a disabled or a static unit not running, not starting it.
111s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 116668 files and directories currently installed.)
111s Preparing to unpack .../gcc-14-base_14.2.0-17ubuntu3_arm64.deb ...
111s Unpacking gcc-14-base:arm64 (14.2.0-17ubuntu3) over (14.2.0-17ubuntu1) ...
111s Preparing to unpack .../cloud-init-base_25.1-0ubuntu1_all.deb ...
111s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead.
111s   for fn in glob1(directory, "%s.*" % fname):
112s Unpacking cloud-init-base (25.1-0ubuntu1) over (25.1~3geb1965a4-0ubuntu1) ...
112s Preparing to unpack .../cloud-init_25.1-0ubuntu1_all.deb ...
112s Unpacking cloud-init (25.1-0ubuntu1) over (25.1~3geb1965a4-0ubuntu1) ...
112s Setting up motd-news-config (13.6ubuntu1) ...
112s Setting up gcc-14-base:arm64 (14.2.0-17ubuntu3) ...
112s Setting up cloud-init-base (25.1-0ubuntu1) ...
114s Setting up cloud-init (25.1-0ubuntu1) ...
114s Processing triggers for man-db (2.13.0-1) ...
115s Processing triggers for plymouth-theme-ubuntu-text (24.004.60-2ubuntu5) ...
115s Processing triggers for install-info (7.1.1-1) ...
115s Processing triggers for rsyslog (8.2412.0-2ubuntu1) ...
115s Processing triggers for initramfs-tools (0.145ubuntu2) ...
115s update-initramfs: Generating /boot/initrd.img-6.12.0-15-generic
115s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
138s System running in EFI mode, skipping.
138s Reading package lists...
139s Building dependency tree...
139s Reading state information...
139s Solving dependencies...
139s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
140s autopkgtest [12:49:21]: upgrading testbed (apt dist-upgrade and autopurge)
140s Reading package lists...
140s Building dependency tree...
140s Reading state information...
141s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
141s Starting 2 pkgProblemResolver with broken count: 0
141s Done
142s Entering ResolveByKeep
142s 
142s Calculating upgrade...
143s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
143s Reading package lists...
143s Building dependency tree...
143s Reading state information...
144s Starting pkgProblemResolver with broken count: 0
144s Starting 2 pkgProblemResolver with broken count: 0
144s Done
144s Solving dependencies...
145s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
145s autopkgtest [12:49:26]: rebooting testbed after setup commands that affected boot
169s autopkgtest [12:49:50]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Tue Feb  4 15:49:33 UTC 2025
173s autopkgtest [12:49:54]: @@@@@@@@@@@@@@@@@@@@ apt-source fast5
176s Get:1 http://ftpmaster.internal/ubuntu plucky/universe fast5 0.6.5-9build1 (dsc) [2223 B]
176s Get:2 http://ftpmaster.internal/ubuntu plucky/universe fast5 0.6.5-9build1 (tar) [93.6 kB]
176s Get:3 http://ftpmaster.internal/ubuntu plucky/universe fast5 0.6.5-9build1 (diff) [5912 B]
176s gpgv: Signature made Sun Jan 26 10:53:00 2025 UTC
176s gpgv:                using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2
176s gpgv: Can't check signature: No public key
176s dpkg-source: warning: cannot verify inline signature for ./fast5_0.6.5-9build1.dsc: no acceptable signature found
176s autopkgtest [12:49:57]: testing package fast5 version 0.6.5-9build1
177s autopkgtest [12:49:58]: build not needed
177s autopkgtest [12:49:58]: test command1: preparing testbed
178s Reading package lists...
178s Building dependency tree...
178s Reading state information...
178s Starting pkgProblemResolver with broken count: 0
179s Starting 2 pkgProblemResolver with broken count: 0
179s Done
179s The following NEW packages will be installed:
179s   build-essential comerr-dev cpp cpp-14 cpp-14-aarch64-linux-gnu
179s   cpp-aarch64-linux-gnu g++ g++-14 g++-14-aarch64-linux-gnu
179s   g++-aarch64-linux-gnu gcc gcc-14 gcc-14-aarch64-linux-gnu
179s   gcc-aarch64-linux-gnu hdf5-helpers krb5-multidev libaec-dev libaec0 libasan8
179s   libbrotli-dev libcc1-0 libcurl4-openssl-dev libevent-2.1-7t64 libfast5-dev
179s   libgcc-14-dev libgfortran5 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64
179s   libgnutls-openssl27t64 libgnutls28-dev libgomp1 libgssrpc4t64 libhdf5-310
179s   libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310
179s   libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libhwasan0 libidn2-dev libisl23
179s   libitm1 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev
179s   libkadm5clnt-mit12 libkadm5srv-mit12 libkdb5-10t64 libkrb5-dev libldap-dev
179s   liblsan0 libmpc3 libnghttp2-dev libp11-kit-dev libpkgconf3 libpsl-dev
179s   librtmp-dev libssh2-1-dev libssl-dev libstdc++-14-dev libsz2 libtasn1-6-dev
179s   libtsan2 libubsan1 libunbound8 libzstd-dev nettle-dev pkgconf pkgconf-bin
179s   zlib1g-dev
180s 0 upgraded, 74 newly installed, 0 to remove and 0 not upgraded.
180s Need to get 76.5 MB of archives.
180s After this operation, 277 MB of additional disk space will be used.
180s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB]
180s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB]
180s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB]
181s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B]
181s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B]
181s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB]
181s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250213-1ubuntu1 [44.2 kB]
182s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250213-1ubuntu1 [146 kB]
182s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250213-1ubuntu1 [28.0 kB]
182s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250213-1ubuntu1 [2928 kB]
182s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250213-1ubuntu1 [1319 kB]
182s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250213-1ubuntu1 [2695 kB]
182s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250213-1ubuntu1 [1178 kB]
182s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250213-1ubuntu1 [1642 kB]
182s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB]
182s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB]
183s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB]
183s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B]
183s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B]
183s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB]
183s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB]
184s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB]
184s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B]
184s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B]
184s Get:25 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 build-essential arm64 12.12 [4610 B]
184s Get:26 http://ftpmaster.internal/ubuntu plucky/universe arm64 hdf5-helpers arm64 1.14.5+repack-3 [17.0 kB]
184s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 comerr-dev arm64 2.1-1.47.2-1ubuntu1 [45.1 kB]
184s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libgssrpc4t64 arm64 1.21.3-4ubuntu1 [58.5 kB]
184s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libkadm5clnt-mit12 arm64 1.21.3-4ubuntu1 [40.3 kB]
184s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libkdb5-10t64 arm64 1.21.3-4ubuntu1 [40.8 kB]
184s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libkadm5srv-mit12 arm64 1.21.3-4ubuntu1 [53.8 kB]
184s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 krb5-multidev arm64 1.21.3-4ubuntu1 [125 kB]
184s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB]
184s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libbrotli-dev arm64 1.1.0-2build3 [359 kB]
184s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libidn2-dev arm64 2.3.7-2build2 [120 kB]
184s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libkrb5-dev arm64 1.21.3-4ubuntu1 [11.9 kB]
184s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libldap-dev arm64 2.6.9+dfsg-1~exp2ubuntu1 [318 kB]
184s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB]
184s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB]
184s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB]
184s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libnghttp2-dev arm64 1.64.0-1 [120 kB]
184s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libpsl-dev arm64 0.21.2-1.1build1 [77.2 kB]
184s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-2ubuntu7 [10.1 kB]
184s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-2ubuntu7 [335 kB]
184s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10 [140 kB]
184s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libunbound8 arm64 1.22.0-1ubuntu1 [437 kB]
184s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libgnutls-dane0t64 arm64 3.8.9-2ubuntu1 [24.4 kB]
184s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libgnutls-openssl27t64 arm64 3.8.9-2ubuntu1 [24.4 kB]
184s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libp11-kit-dev arm64 0.25.5-2ubuntu3 [23.5 kB]
184s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libtasn1-6-dev arm64 4.20.0-2 [91.1 kB]
184s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 nettle-dev arm64 3.10.1-1 [1190 kB]
184s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libgnutls28-dev arm64 3.8.9-2ubuntu1 [1143 kB]
184s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB]
184s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2build7 [69.4 kB]
184s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libssl-dev arm64 3.4.1-1ubuntu1 [3287 kB]
184s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libssh2-1-dev arm64 1.11.1-1 [286 kB]
184s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libzstd-dev arm64 1.5.6+dfsg-2 [353 kB]
184s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libcurl4-openssl-dev arm64 8.12.0+git20250209.89ed161+ds-1ubuntu1 [506 kB]
184s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B]
184s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-310 arm64 1.14.5+repack-3 [1331 kB]
184s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250213-1ubuntu1 [443 kB]
184s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-fortran-310 arm64 1.14.5+repack-3 [109 kB]
184s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [59.8 kB]
184s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-fortran-310 arm64 1.14.5+repack-3 [31.8 kB]
184s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-cpp-310 arm64 1.14.5+repack-3 [117 kB]
184s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-cpp-310 arm64 1.14.5+repack-3 [11.6 kB]
184s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB]
184s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB]
184s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
184s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
184s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
184s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec-dev arm64 1.1.3-1 [19.3 kB]
184s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-dev arm64 1.14.5+repack-3 [3581 kB]
185s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfast5-dev all 0.6.5-9build1 [50.5 kB]
185s Fetched 76.5 MB in 5s (14.3 MB/s)
185s Selecting previously unselected package libisl23:arm64.
186s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 116669 files and directories currently installed.)
186s Preparing to unpack .../00-libisl23_0.27-1_arm64.deb ...
186s Unpacking libisl23:arm64 (0.27-1) ...
186s Selecting previously unselected package libmpc3:arm64.
186s Preparing to unpack .../01-libmpc3_1.3.1-1build2_arm64.deb ...
186s Unpacking libmpc3:arm64 (1.3.1-1build2) ...
186s Selecting previously unselected package cpp-14-aarch64-linux-gnu.
186s Preparing to unpack .../02-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
186s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
186s Selecting previously unselected package cpp-14.
186s Preparing to unpack .../03-cpp-14_14.2.0-17ubuntu3_arm64.deb ...
186s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
186s Selecting previously unselected package cpp-aarch64-linux-gnu.
186s Preparing to unpack .../04-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
186s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
186s Selecting previously unselected package cpp.
186s Preparing to unpack .../05-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ...
186s Unpacking cpp (4:14.2.0-1ubuntu1) ...
186s Selecting previously unselected package libcc1-0:arm64.
186s Preparing to unpack .../06-libcc1-0_15-20250213-1ubuntu1_arm64.deb ...
186s Unpacking libcc1-0:arm64 (15-20250213-1ubuntu1) ...
186s Selecting previously unselected package libgomp1:arm64.
186s Preparing to unpack .../07-libgomp1_15-20250213-1ubuntu1_arm64.deb ...
186s Unpacking libgomp1:arm64 (15-20250213-1ubuntu1) ...
187s Selecting previously unselected package libitm1:arm64.
187s Preparing to unpack .../08-libitm1_15-20250213-1ubuntu1_arm64.deb ...
187s Unpacking libitm1:arm64 (15-20250213-1ubuntu1) ...
187s Selecting previously unselected package libasan8:arm64.
187s Preparing to unpack .../09-libasan8_15-20250213-1ubuntu1_arm64.deb ...
187s Unpacking libasan8:arm64 (15-20250213-1ubuntu1) ...
187s Selecting previously unselected package liblsan0:arm64.
187s Preparing to unpack .../10-liblsan0_15-20250213-1ubuntu1_arm64.deb ...
187s Unpacking liblsan0:arm64 (15-20250213-1ubuntu1) ...
187s Selecting previously unselected package libtsan2:arm64.
187s Preparing to unpack .../11-libtsan2_15-20250213-1ubuntu1_arm64.deb ...
187s Unpacking libtsan2:arm64 (15-20250213-1ubuntu1) ...
187s Selecting previously unselected package libubsan1:arm64.
187s Preparing to unpack .../12-libubsan1_15-20250213-1ubuntu1_arm64.deb ...
187s Unpacking libubsan1:arm64 (15-20250213-1ubuntu1) ...
187s Selecting previously unselected package libhwasan0:arm64.
187s Preparing to unpack .../13-libhwasan0_15-20250213-1ubuntu1_arm64.deb ...
187s Unpacking libhwasan0:arm64 (15-20250213-1ubuntu1) ...
187s Selecting previously unselected package libgcc-14-dev:arm64.
187s Preparing to unpack .../14-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ...
187s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ...
187s Selecting previously unselected package gcc-14-aarch64-linux-gnu.
187s Preparing to unpack .../15-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
187s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
188s Selecting previously unselected package gcc-14.
188s Preparing to unpack .../16-gcc-14_14.2.0-17ubuntu3_arm64.deb ...
188s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
188s Selecting previously unselected package gcc-aarch64-linux-gnu.
188s Preparing to unpack .../17-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
188s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
188s Selecting previously unselected package gcc.
188s Preparing to unpack .../18-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ...
188s Unpacking gcc (4:14.2.0-1ubuntu1) ...
188s Selecting previously unselected package libstdc++-14-dev:arm64.
188s Preparing to unpack .../19-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ...
188s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ...
189s Selecting previously unselected package g++-14-aarch64-linux-gnu.
189s Preparing to unpack .../20-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
189s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
189s Selecting previously unselected package g++-14.
189s Preparing to unpack .../21-g++-14_14.2.0-17ubuntu3_arm64.deb ...
189s Unpacking g++-14 (14.2.0-17ubuntu3) ...
189s Selecting previously unselected package g++-aarch64-linux-gnu.
189s Preparing to unpack .../22-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
189s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
189s Selecting previously unselected package g++.
189s Preparing to unpack .../23-g++_4%3a14.2.0-1ubuntu1_arm64.deb ...
189s Unpacking g++ (4:14.2.0-1ubuntu1) ...
189s Selecting previously unselected package build-essential.
189s Preparing to unpack .../24-build-essential_12.12_arm64.deb ...
189s Unpacking build-essential (12.12) ...
189s Selecting previously unselected package hdf5-helpers.
189s Preparing to unpack .../25-hdf5-helpers_1.14.5+repack-3_arm64.deb ...
189s Unpacking hdf5-helpers (1.14.5+repack-3) ...
189s Selecting previously unselected package comerr-dev:arm64.
189s Preparing to unpack .../26-comerr-dev_2.1-1.47.2-1ubuntu1_arm64.deb ...
189s Unpacking comerr-dev:arm64 (2.1-1.47.2-1ubuntu1) ...
189s Selecting previously unselected package libgssrpc4t64:arm64.
189s Preparing to unpack .../27-libgssrpc4t64_1.21.3-4ubuntu1_arm64.deb ...
189s Unpacking libgssrpc4t64:arm64 (1.21.3-4ubuntu1) ...
189s Selecting previously unselected package libkadm5clnt-mit12:arm64.
189s Preparing to unpack .../28-libkadm5clnt-mit12_1.21.3-4ubuntu1_arm64.deb ...
189s Unpacking libkadm5clnt-mit12:arm64 (1.21.3-4ubuntu1) ...
189s Selecting previously unselected package libkdb5-10t64:arm64.
189s Preparing to unpack .../29-libkdb5-10t64_1.21.3-4ubuntu1_arm64.deb ...
189s Unpacking libkdb5-10t64:arm64 (1.21.3-4ubuntu1) ...
189s Selecting previously unselected package libkadm5srv-mit12:arm64.
190s Preparing to unpack .../30-libkadm5srv-mit12_1.21.3-4ubuntu1_arm64.deb ...
190s Unpacking libkadm5srv-mit12:arm64 (1.21.3-4ubuntu1) ...
190s Selecting previously unselected package krb5-multidev:arm64.
190s Preparing to unpack .../31-krb5-multidev_1.21.3-4ubuntu1_arm64.deb ...
190s Unpacking krb5-multidev:arm64 (1.21.3-4ubuntu1) ...
190s Selecting previously unselected package libaec0:arm64.
190s Preparing to unpack .../32-libaec0_1.1.3-1_arm64.deb ...
190s Unpacking libaec0:arm64 (1.1.3-1) ...
190s Selecting previously unselected package libbrotli-dev:arm64.
190s Preparing to unpack .../33-libbrotli-dev_1.1.0-2build3_arm64.deb ...
190s Unpacking libbrotli-dev:arm64 (1.1.0-2build3) ...
190s Selecting previously unselected package libidn2-dev:arm64.
190s Preparing to unpack .../34-libidn2-dev_2.3.7-2build2_arm64.deb ...
190s Unpacking libidn2-dev:arm64 (2.3.7-2build2) ...
190s Selecting previously unselected package libkrb5-dev:arm64.
190s Preparing to unpack .../35-libkrb5-dev_1.21.3-4ubuntu1_arm64.deb ...
190s Unpacking libkrb5-dev:arm64 (1.21.3-4ubuntu1) ...
190s Selecting previously unselected package libldap-dev:arm64.
190s Preparing to unpack .../36-libldap-dev_2.6.9+dfsg-1~exp2ubuntu1_arm64.deb ...
190s Unpacking libldap-dev:arm64 (2.6.9+dfsg-1~exp2ubuntu1) ...
190s Selecting previously unselected package libpkgconf3:arm64.
190s Preparing to unpack .../37-libpkgconf3_1.8.1-4_arm64.deb ...
190s Unpacking libpkgconf3:arm64 (1.8.1-4) ...
190s Selecting previously unselected package pkgconf-bin.
190s Preparing to unpack .../38-pkgconf-bin_1.8.1-4_arm64.deb ...
190s Unpacking pkgconf-bin (1.8.1-4) ...
190s Selecting previously unselected package pkgconf:arm64.
190s Preparing to unpack .../39-pkgconf_1.8.1-4_arm64.deb ...
190s Unpacking pkgconf:arm64 (1.8.1-4) ...
190s Selecting previously unselected package libnghttp2-dev:arm64.
190s Preparing to unpack .../40-libnghttp2-dev_1.64.0-1_arm64.deb ...
190s Unpacking libnghttp2-dev:arm64 (1.64.0-1) ...
190s Selecting previously unselected package libpsl-dev:arm64.
190s Preparing to unpack .../41-libpsl-dev_0.21.2-1.1build1_arm64.deb ...
190s Unpacking libpsl-dev:arm64 (0.21.2-1.1build1) ...
190s Selecting previously unselected package libgmpxx4ldbl:arm64.
190s Preparing to unpack .../42-libgmpxx4ldbl_2%3a6.3.0+dfsg-2ubuntu7_arm64.deb ...
190s Unpacking libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-2ubuntu7) ...
190s Selecting previously unselected package libgmp-dev:arm64.
190s Preparing to unpack .../43-libgmp-dev_2%3a6.3.0+dfsg-2ubuntu7_arm64.deb ...
190s Unpacking libgmp-dev:arm64 (2:6.3.0+dfsg-2ubuntu7) ...
190s Selecting previously unselected package libevent-2.1-7t64:arm64.
190s Preparing to unpack .../44-libevent-2.1-7t64_2.1.12-stable-10_arm64.deb ...
190s Unpacking libevent-2.1-7t64:arm64 (2.1.12-stable-10) ...
190s Selecting previously unselected package libunbound8:arm64.
190s Preparing to unpack .../45-libunbound8_1.22.0-1ubuntu1_arm64.deb ...
190s Unpacking libunbound8:arm64 (1.22.0-1ubuntu1) ...
190s Selecting previously unselected package libgnutls-dane0t64:arm64.
190s Preparing to unpack .../46-libgnutls-dane0t64_3.8.9-2ubuntu1_arm64.deb ...
190s Unpacking libgnutls-dane0t64:arm64 (3.8.9-2ubuntu1) ...
190s Selecting previously unselected package libgnutls-openssl27t64:arm64.
190s Preparing to unpack .../47-libgnutls-openssl27t64_3.8.9-2ubuntu1_arm64.deb ...
190s Unpacking libgnutls-openssl27t64:arm64 (3.8.9-2ubuntu1) ...
191s Selecting previously unselected package libp11-kit-dev:arm64.
191s Preparing to unpack .../48-libp11-kit-dev_0.25.5-2ubuntu3_arm64.deb ...
191s Unpacking libp11-kit-dev:arm64 (0.25.5-2ubuntu3) ...
191s Selecting previously unselected package libtasn1-6-dev:arm64.
191s Preparing to unpack .../49-libtasn1-6-dev_4.20.0-2_arm64.deb ...
191s Unpacking libtasn1-6-dev:arm64 (4.20.0-2) ...
191s Selecting previously unselected package nettle-dev:arm64.
191s Preparing to unpack .../50-nettle-dev_3.10.1-1_arm64.deb ...
191s Unpacking nettle-dev:arm64 (3.10.1-1) ...
191s Selecting previously unselected package libgnutls28-dev:arm64.
191s Preparing to unpack .../51-libgnutls28-dev_3.8.9-2ubuntu1_arm64.deb ...
191s Unpacking libgnutls28-dev:arm64 (3.8.9-2ubuntu1) ...
191s Selecting previously unselected package zlib1g-dev:arm64.
191s Preparing to unpack .../52-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ...
191s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
191s Selecting previously unselected package librtmp-dev:arm64.
191s Preparing to unpack .../53-librtmp-dev_2.4+20151223.gitfa8646d.1-2build7_arm64.deb ...
191s Unpacking librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2build7) ...
191s Selecting previously unselected package libssl-dev:arm64.
191s Preparing to unpack .../54-libssl-dev_3.4.1-1ubuntu1_arm64.deb ...
191s Unpacking libssl-dev:arm64 (3.4.1-1ubuntu1) ...
191s Selecting previously unselected package libssh2-1-dev:arm64.
191s Preparing to unpack .../55-libssh2-1-dev_1.11.1-1_arm64.deb ...
191s Unpacking libssh2-1-dev:arm64 (1.11.1-1) ...
191s Selecting previously unselected package libzstd-dev:arm64.
191s Preparing to unpack .../56-libzstd-dev_1.5.6+dfsg-2_arm64.deb ...
191s Unpacking libzstd-dev:arm64 (1.5.6+dfsg-2) ...
191s Selecting previously unselected package libcurl4-openssl-dev:arm64.
191s Preparing to unpack .../57-libcurl4-openssl-dev_8.12.0+git20250209.89ed161+ds-1ubuntu1_arm64.deb ...
191s Unpacking libcurl4-openssl-dev:arm64 (8.12.0+git20250209.89ed161+ds-1ubuntu1) ...
191s Selecting previously unselected package libsz2:arm64.
192s Preparing to unpack .../58-libsz2_1.1.3-1_arm64.deb ...
192s Unpacking libsz2:arm64 (1.1.3-1) ...
192s Selecting previously unselected package libhdf5-310:arm64.
192s Preparing to unpack .../59-libhdf5-310_1.14.5+repack-3_arm64.deb ...
192s Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ...
192s Selecting previously unselected package libgfortran5:arm64.
192s Preparing to unpack .../60-libgfortran5_15-20250213-1ubuntu1_arm64.deb ...
192s Unpacking libgfortran5:arm64 (15-20250213-1ubuntu1) ...
192s Selecting previously unselected package libhdf5-fortran-310:arm64.
192s Preparing to unpack .../61-libhdf5-fortran-310_1.14.5+repack-3_arm64.deb ...
192s Unpacking libhdf5-fortran-310:arm64 (1.14.5+repack-3) ...
192s Selecting previously unselected package libhdf5-hl-310:arm64.
192s Preparing to unpack .../62-libhdf5-hl-310_1.14.5+repack-3_arm64.deb ...
192s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3) ...
192s Selecting previously unselected package libhdf5-hl-fortran-310:arm64.
192s Preparing to unpack .../63-libhdf5-hl-fortran-310_1.14.5+repack-3_arm64.deb ...
192s Unpacking libhdf5-hl-fortran-310:arm64 (1.14.5+repack-3) ...
192s Selecting previously unselected package libhdf5-cpp-310:arm64.
192s Preparing to unpack .../64-libhdf5-cpp-310_1.14.5+repack-3_arm64.deb ...
192s Unpacking libhdf5-cpp-310:arm64 (1.14.5+repack-3) ...
192s Selecting previously unselected package libhdf5-hl-cpp-310:arm64.
192s Preparing to unpack .../65-libhdf5-hl-cpp-310_1.14.5+repack-3_arm64.deb ...
192s Unpacking libhdf5-hl-cpp-310:arm64 (1.14.5+repack-3) ...
192s Selecting previously unselected package libjpeg-turbo8:arm64.
192s Preparing to unpack .../66-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ...
192s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ...
192s Selecting previously unselected package libjpeg-turbo8-dev:arm64.
192s Preparing to unpack .../67-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ...
192s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ...
192s Selecting previously unselected package libjpeg8:arm64.
192s Preparing to unpack .../68-libjpeg8_8c-2ubuntu11_arm64.deb ...
192s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
192s Selecting previously unselected package libjpeg8-dev:arm64.
192s Preparing to unpack .../69-libjpeg8-dev_8c-2ubuntu11_arm64.deb ...
192s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ...
192s Selecting previously unselected package libjpeg-dev:arm64.
192s Preparing to unpack .../70-libjpeg-dev_8c-2ubuntu11_arm64.deb ...
192s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ...
192s Selecting previously unselected package libaec-dev:arm64.
192s Preparing to unpack .../71-libaec-dev_1.1.3-1_arm64.deb ...
192s Unpacking libaec-dev:arm64 (1.1.3-1) ...
192s Selecting previously unselected package libhdf5-dev.
192s Preparing to unpack .../72-libhdf5-dev_1.14.5+repack-3_arm64.deb ...
192s Unpacking libhdf5-dev (1.14.5+repack-3) ...
192s Selecting previously unselected package libfast5-dev.
192s Preparing to unpack .../73-libfast5-dev_0.6.5-9build1_all.deb ...
192s Unpacking libfast5-dev (0.6.5-9build1) ...
192s Setting up libgnutls-openssl27t64:arm64 (3.8.9-2ubuntu1) ...
192s Setting up libzstd-dev:arm64 (1.5.6+dfsg-2) ...
192s Setting up hdf5-helpers (1.14.5+repack-3) ...
192s Setting up libevent-2.1-7t64:arm64 (2.1.12-stable-10) ...
192s Setting up libgomp1:arm64 (15-20250213-1ubuntu1) ...
192s Setting up libaec0:arm64 (1.1.3-1) ...
192s Setting up libpsl-dev:arm64 (0.21.2-1.1build1) ...
192s Setting up libunbound8:arm64 (1.22.0-1ubuntu1) ...
192s Setting up libpkgconf3:arm64 (1.8.1-4) ...
192s Setting up libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-2ubuntu7) ...
192s Setting up libgnutls-dane0t64:arm64 (3.8.9-2ubuntu1) ...
192s Setting up libgssrpc4t64:arm64 (1.21.3-4ubuntu1) ...
192s Setting up libldap-dev:arm64 (2.6.9+dfsg-1~exp2ubuntu1) ...
192s Setting up comerr-dev:arm64 (2.1-1.47.2-1ubuntu1) ...
192s Setting up libssl-dev:arm64 (3.4.1-1ubuntu1) ...
192s Setting up libmpc3:arm64 (1.3.1-1build2) ...
192s Setting up pkgconf-bin (1.8.1-4) ...
192s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ...
192s Setting up libidn2-dev:arm64 (2.3.7-2build2) ...
192s Setting up libgfortran5:arm64 (15-20250213-1ubuntu1) ...
192s Setting up libubsan1:arm64 (15-20250213-1ubuntu1) ...
192s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
192s Setting up libhwasan0:arm64 (15-20250213-1ubuntu1) ...
192s Setting up libasan8:arm64 (15-20250213-1ubuntu1) ...
192s Setting up libtsan2:arm64 (15-20250213-1ubuntu1) ...
192s Setting up libisl23:arm64 (0.27-1) ...
192s Setting up libtasn1-6-dev:arm64 (4.20.0-2) ...
192s Setting up libcc1-0:arm64 (15-20250213-1ubuntu1) ...
192s Setting up libbrotli-dev:arm64 (1.1.0-2build3) ...
192s Setting up liblsan0:arm64 (15-20250213-1ubuntu1) ...
192s Setting up libp11-kit-dev:arm64 (0.25.5-2ubuntu3) ...
192s Setting up libsz2:arm64 (1.1.3-1) ...
192s Setting up libitm1:arm64 (15-20250213-1ubuntu1) ...
192s Setting up libkadm5clnt-mit12:arm64 (1.21.3-4ubuntu1) ...
192s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
192s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ...
193s Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-2ubuntu7) ...
193s Setting up nettle-dev:arm64 (3.10.1-1) ...
193s Setting up libkdb5-10t64:arm64 (1.21.3-4ubuntu1) ...
193s Setting up libaec-dev:arm64 (1.1.3-1) ...
193s Setting up pkgconf:arm64 (1.8.1-4) ...
193s Setting up libssh2-1-dev:arm64 (1.11.1-1) ...
193s Setting up libhdf5-310:arm64 (1.14.5+repack-3) ...
193s Setting up cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
193s Setting up libkadm5srv-mit12:arm64 (1.21.3-4ubuntu1) ...
193s Setting up libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ...
193s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ...
193s Setting up libhdf5-fortran-310:arm64 (1.14.5+repack-3) ...
193s Setting up libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ...
193s Setting up krb5-multidev:arm64 (1.21.3-4ubuntu1) ...
193s Setting up libhdf5-cpp-310:arm64 (1.14.5+repack-3) ...
193s Setting up libgnutls28-dev:arm64 (3.8.9-2ubuntu1) ...
193s Setting up libnghttp2-dev:arm64 (1.64.0-1) ...
193s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3) ...
193s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ...
193s Setting up libkrb5-dev:arm64 (1.21.3-4ubuntu1) ...
193s Setting up cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
193s Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2build7) ...
193s Setting up cpp-14 (14.2.0-17ubuntu3) ...
193s Setting up cpp (4:14.2.0-1ubuntu1) ...
193s Setting up gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
193s Setting up libhdf5-hl-cpp-310:arm64 (1.14.5+repack-3) ...
193s Setting up gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
193s Setting up libhdf5-hl-fortran-310:arm64 (1.14.5+repack-3) ...
193s Setting up g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
193s Setting up gcc-14 (14.2.0-17ubuntu3) ...
193s Setting up libcurl4-openssl-dev:arm64 (8.12.0+git20250209.89ed161+ds-1ubuntu1) ...
193s Setting up libhdf5-dev (1.14.5+repack-3) ...
193s update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
193s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
193s Setting up g++-14 (14.2.0-17ubuntu3) ...
193s Setting up gcc (4:14.2.0-1ubuntu1) ...
193s Setting up libfast5-dev (0.6.5-9build1) ...
193s Setting up g++ (4:14.2.0-1ubuntu1) ...
193s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
193s Setting up build-essential (12.12) ...
193s Processing triggers for libc-bin (2.40-4ubuntu1) ...
193s Processing triggers for man-db (2.13.0-1) ...
194s Processing triggers for install-info (7.1.1-1) ...
195s autopkgtest [12:50:16]: test command1: 	cp /usr/share/doc/libfast5-dev/examples/* $AUTOPKGTEST_TMP	&& cd $AUTOPKGTEST_TMP	&& make FAST5_DIR=/usr/include	HDF5_INCLUDE_DIR=/usr/include/hdf5/serial	HDF5_LIB_DIR=/usr/lib/$(gcc -print-multiarch)/hdf5/serial
195s autopkgtest [12:50:16]: test command1: [-----------------------
195s g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /usr/include -DH5_USE_110_API -o f5ls f5ls.cpp -L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl
203s g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /usr/include -DH5_USE_110_API -o f5ls-full f5ls-full.cpp -L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl
211s g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /usr/include -DH5_USE_110_API -o hdf5-mod hdf5-mod.cpp -L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl
215s g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /usr/include -DH5_USE_110_API -o f5-mod f5-mod.cpp -L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl
221s autopkgtest [12:50:42]: test command1: -----------------------]
224s autopkgtest [12:50:45]: test command1:  - - - - - - - - - - results - - - - - - - - - -
224s command1             PASS
225s autopkgtest [12:50:46]: test command2: preparing testbed
356s autopkgtest [12:52:57]: testbed dpkg architecture: arm64
356s autopkgtest [12:52:57]: testbed apt version: 2.9.30ubuntu1
356s autopkgtest [12:52:57]: @@@@@@@@@@@@@@@@@@@@ test bed setup
357s autopkgtest [12:52:58]: testbed release detected to be: plucky
357s autopkgtest [12:52:58]: updating testbed package index (apt update)
358s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB]
358s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
358s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
358s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
358s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [90.3 kB]
358s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.8 kB]
358s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B]
358s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [719 kB]
358s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [132 kB]
358s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [7960 B]
358s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [677 kB]
358s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [10.7 kB]
359s Fetched 1765 kB in 1s (1954 kB/s)
359s Reading package lists...
360s Reading package lists...
360s Building dependency tree...
360s Reading state information...
361s Calculating upgrade...
361s Calculating upgrade...
361s The following packages will be upgraded:
361s   base-files cloud-init cloud-init-base gcc-14-base motd-news-config
361s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
361s Need to get 752 kB of archives.
361s After this operation, 19.5 kB of additional disk space will be used.
361s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 motd-news-config all 13.6ubuntu1 [5168 B]
362s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 base-files arm64 13.6ubuntu1 [75.6 kB]
362s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-base arm64 14.2.0-17ubuntu3 [53.6 kB]
362s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cloud-init-base all 25.1-0ubuntu1 [616 kB]
362s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cloud-init all 25.1-0ubuntu1 [2088 B]
362s Preconfiguring packages ...
362s Fetched 752 kB in 1s (1328 kB/s)
363s (Reading database ... 
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(Reading database ... 116668 files and directories currently installed.)
363s Preparing to unpack .../motd-news-config_13.6ubuntu1_all.deb ...
363s Unpacking motd-news-config (13.6ubuntu1) over (13.5ubuntu3) ...
363s Preparing to unpack .../base-files_13.6ubuntu1_arm64.deb ...
363s Unpacking base-files (13.6ubuntu1) over (13.5ubuntu3) ...
363s Setting up base-files (13.6ubuntu1) ...
363s Updating /root/.profile to current default.
364s motd-news.service is a disabled or a static unit not running, not starting it.
364s (Reading database ... 
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(Reading database ... 116668 files and directories currently installed.)
364s Preparing to unpack .../gcc-14-base_14.2.0-17ubuntu3_arm64.deb ...
364s Unpacking gcc-14-base:arm64 (14.2.0-17ubuntu3) over (14.2.0-17ubuntu1) ...
364s Preparing to unpack .../cloud-init-base_25.1-0ubuntu1_all.deb ...
364s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead.
364s   for fn in glob1(directory, "%s.*" % fname):
364s Unpacking cloud-init-base (25.1-0ubuntu1) over (25.1~3geb1965a4-0ubuntu1) ...
364s Preparing to unpack .../cloud-init_25.1-0ubuntu1_all.deb ...
364s Unpacking cloud-init (25.1-0ubuntu1) over (25.1~3geb1965a4-0ubuntu1) ...
364s Setting up motd-news-config (13.6ubuntu1) ...
364s Setting up gcc-14-base:arm64 (14.2.0-17ubuntu3) ...
364s Setting up cloud-init-base (25.1-0ubuntu1) ...
366s Setting up cloud-init (25.1-0ubuntu1) ...
366s Processing triggers for man-db (2.13.0-1) ...
367s Processing triggers for plymouth-theme-ubuntu-text (24.004.60-2ubuntu5) ...
367s Processing triggers for install-info (7.1.1-1) ...
367s Processing triggers for rsyslog (8.2412.0-2ubuntu1) ...
367s Processing triggers for initramfs-tools (0.145ubuntu2) ...
367s update-initramfs: Generating /boot/initrd.img-6.12.0-15-generic
367s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
391s System running in EFI mode, skipping.
391s Reading package lists...
392s Building dependency tree...
392s Reading state information...
392s Solving dependencies...
394s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
394s autopkgtest [12:53:35]: upgrading testbed (apt dist-upgrade and autopurge)
394s Reading package lists...
395s Building dependency tree...
395s Reading state information...
396s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
396s Starting 2 pkgProblemResolver with broken count: 0
396s Done
398s Entering ResolveByKeep
398s 
399s Calculating upgrade...
400s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
400s Reading package lists...
401s Building dependency tree...
401s Reading state information...
402s Starting pkgProblemResolver with broken count: 0
402s Starting 2 pkgProblemResolver with broken count: 0
402s Done
403s Solving dependencies...
404s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
404s autopkgtest [12:53:45]: rebooting testbed after setup commands that affected boot
431s Reading package lists...
432s Building dependency tree...
432s Reading state information...
432s Starting pkgProblemResolver with broken count: 0
433s Starting 2 pkgProblemResolver with broken count: 0
433s Done
434s The following NEW packages will be installed:
434s   libaec0 libhdf5-310 libsz2 python3-fast5
434s 0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded.
434s Need to get 1685 kB of archives.
434s After this operation, 6284 kB of additional disk space will be used.
434s Get:1 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB]
434s Get:2 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B]
434s Get:3 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-310 arm64 1.14.5+repack-3 [1331 kB]
434s Get:4 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fast5 arm64 0.6.5-9build1 [327 kB]
435s Fetched 1685 kB in 1s (2603 kB/s)
435s Selecting previously unselected package libaec0:arm64.
435s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 116669 files and directories currently installed.)
435s Preparing to unpack .../libaec0_1.1.3-1_arm64.deb ...
435s Unpacking libaec0:arm64 (1.1.3-1) ...
435s Selecting previously unselected package libsz2:arm64.
435s Preparing to unpack .../libsz2_1.1.3-1_arm64.deb ...
435s Unpacking libsz2:arm64 (1.1.3-1) ...
435s Selecting previously unselected package libhdf5-310:arm64.
435s Preparing to unpack .../libhdf5-310_1.14.5+repack-3_arm64.deb ...
435s Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ...
436s Selecting previously unselected package python3-fast5:arm64.
436s Preparing to unpack .../python3-fast5_0.6.5-9build1_arm64.deb ...
436s Unpacking python3-fast5:arm64 (0.6.5-9build1) ...
436s Setting up libaec0:arm64 (1.1.3-1) ...
436s Setting up libsz2:arm64 (1.1.3-1) ...
436s Setting up libhdf5-310:arm64 (1.14.5+repack-3) ...
436s Setting up python3-fast5:arm64 (0.6.5-9build1) ...
436s Processing triggers for libc-bin (2.40-4ubuntu1) ...
438s autopkgtest [12:54:19]: test command2: 	python3 -c "import fast5"
438s autopkgtest [12:54:19]: test command2: [-----------------------
439s autopkgtest [12:54:20]: test command2: -----------------------]
440s autopkgtest [12:54:21]: test command2:  - - - - - - - - - - results - - - - - - - - - -
440s command2             PASS
440s autopkgtest [12:54:21]: @@@@@@@@@@@@@@@@@@@@ summary
440s command1             PASS
440s command2             PASS
446s nova [W] Using flock in prodstack6-arm64
446s Creating nova instance adt-plucky-arm64-fast5-20250221-124701-juju-7f2275-prod-proposed-migration-environment-2-a5cf0ecc-5947-411e-82e4-e6de4cdfc34a from image adt/ubuntu-plucky-arm64-server-20250221.img (UUID 7cc4cd7e-6f5b-4658-9b17-e38e7fa05fb0)...
446s nova [W] Timed out waiting for 7463352e-15e4-4093-a17e-65837b88a109 to get deleted.
446s nova [W] Using flock in prodstack6-arm64
446s Creating nova instance adt-plucky-arm64-fast5-20250221-124701-juju-7f2275-prod-proposed-migration-environment-2-a5cf0ecc-5947-411e-82e4-e6de4cdfc34a from image adt/ubuntu-plucky-arm64-server-20250221.img (UUID 7cc4cd7e-6f5b-4658-9b17-e38e7fa05fb0)...
446s nova [W] Timed out waiting for 77b04d44-4610-49c0-b80a-aa09b9b7a661 to get deleted.