0s autopkgtest [09:08:06]: starting date and time: 2024-11-13 09:08:06+0000 0s autopkgtest [09:08:06]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [09:08:06]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.jc5k6p2m/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade fast5 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-33.secgroup --name adt-plucky-arm64-fast5-20241113-090805-juju-7f2275-prod-proposed-migration-environment-15-e1676c9f-8816-4caf-9586-2f9ae0103557 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 88s autopkgtest [09:09:34]: testbed dpkg architecture: arm64 88s autopkgtest [09:09:34]: testbed apt version: 2.9.8 88s autopkgtest [09:09:34]: @@@@@@@@@@@@@@@@@@@@ test bed setup 89s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 89s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 89s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 89s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 89s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 90s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB] 90s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 90s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB] 90s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB] 90s Fetched 1793 kB in 1s (1923 kB/s) 90s Reading package lists... 93s Reading package lists... 93s Building dependency tree... 93s Reading state information... 94s Calculating upgrade... 94s The following NEW packages will be installed: 94s python3.13-gdbm 94s The following packages will be upgraded: 94s libpython3-stdlib python3 python3-gdbm python3-minimal 94s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 94s Need to get 101 kB of archives. 94s After this operation, 141 kB of additional disk space will be used. 94s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB] 94s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB] 94s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB] 94s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB] 94s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B] 95s Fetched 101 kB in 0s (273 kB/s) 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 95s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ... 95s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 95s Setting up python3-minimal (3.12.7-1) ... 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 96s Preparing to unpack .../python3_3.12.7-1_arm64.deb ... 96s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 96s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ... 96s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 96s Selecting previously unselected package python3.13-gdbm. 96s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ... 96s Unpacking python3.13-gdbm (3.13.0-2) ... 96s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ... 96s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 96s Setting up python3.13-gdbm (3.13.0-2) ... 96s Setting up libpython3-stdlib:arm64 (3.12.7-1) ... 96s Setting up python3 (3.12.7-1) ... 96s Setting up python3-gdbm:arm64 (3.12.7-1) ... 96s Processing triggers for man-db (2.12.1-3) ... 97s Reading package lists... 97s Building dependency tree... 97s Reading state information... 98s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 101s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 101s Reading package lists... 101s Building dependency tree... 101s Reading state information... 101s Calculating upgrade...Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 101s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 101s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 101s Reading package lists... 101s 101s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 101s Reading package lists... 102s Building dependency tree... 102s Reading state information... 103s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s autopkgtest [09:09:51]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 106s autopkgtest [09:09:51]: @@@@@@@@@@@@@@@@@@@@ apt-source fast5 108s Get:1 http://ftpmaster.internal/ubuntu plucky/universe fast5 0.6.5-8 (dsc) [2339 B] 108s Get:2 http://ftpmaster.internal/ubuntu plucky/universe fast5 0.6.5-8 (tar) [93.6 kB] 108s Get:3 http://ftpmaster.internal/ubuntu plucky/universe fast5 0.6.5-8 (diff) [5668 B] 108s gpgv: Signature made Wed Aug 21 15:10:31 2024 UTC 108s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 108s gpgv: issuer "emollier@debian.org" 108s gpgv: Can't check signature: No public key 108s dpkg-source: warning: cannot verify inline signature for ./fast5_0.6.5-8.dsc: no acceptable signature found 109s autopkgtest [09:09:55]: testing package fast5 version 0.6.5-8 109s autopkgtest [09:09:55]: build not needed 109s autopkgtest [09:09:55]: test command1: preparing testbed 113s Reading package lists... 115s Building dependency tree... 115s Reading state information... 115s Starting pkgProblemResolver with broken count: 0 115s Starting 2 pkgProblemResolver with broken count: 0 115s Done 115s The following additional packages will be installed: 115s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 115s g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 115s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu hdf5-helpers libaec-dev 115s libaec0 libasan8 libbrotli-dev libcc1-0 libcurl4-openssl-dev 115s libevent-2.1-7t64 libfast5-dev libgcc-14-dev libgfortran5 libgmp-dev 115s libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev 115s libgomp1 libhdf5-103-1t64 libhdf5-cpp-103-1t64 libhdf5-dev 115s libhdf5-fortran-102t64 libhdf5-hl-100t64 libhdf5-hl-cpp-100t64 115s libhdf5-hl-fortran-100t64 libhwasan0 libidn2-dev libisl23 libitm1 115s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblsan0 115s libmpc3 libnghttp2-dev libp11-kit-dev libpkgconf3 libpsl-dev librtmp-dev 115s libssh2-1-dev libssl-dev libstdc++-14-dev libsz2 libtasn1-6-dev libtsan2 115s libubsan1 libunbound8 libzstd-dev nettle-dev pkgconf pkgconf-bin zlib1g-dev 115s Suggested packages: 115s cpp-doc gcc-14-locales cpp-14-doc gcc-14-doc gcc-multilib manpages-dev 115s autoconf automake libtool flex bison gdb gcc-doc gdb-aarch64-linux-gnu 115s libcurl4-doc libidn-dev libkrb5-dev libldap2-dev gmp-doc libgmp10-doc 115s libmpfr-dev dns-root-data gnutls-bin gnutls-doc libhdf5-doc libnghttp2-doc 115s p11-kit-doc libssl-doc libstdc++-14-doc 115s Recommended packages: 115s libtasn1-doc 115s The following NEW packages will be installed: 115s autopkgtest-satdep build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu 115s cpp-aarch64-linux-gnu g++ g++-14 g++-14-aarch64-linux-gnu 115s g++-aarch64-linux-gnu gcc gcc-14 gcc-14-aarch64-linux-gnu 115s gcc-aarch64-linux-gnu hdf5-helpers libaec-dev libaec0 libasan8 libbrotli-dev 115s libcc1-0 libcurl4-openssl-dev libevent-2.1-7t64 libfast5-dev libgcc-14-dev 115s libgfortran5 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 115s libgnutls-openssl27t64 libgnutls28-dev libgomp1 libhdf5-103-1t64 115s libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64 libhdf5-hl-100t64 115s libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libhwasan0 libidn2-dev 115s libisl23 libitm1 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 115s libjpeg8-dev liblsan0 libmpc3 libnghttp2-dev libp11-kit-dev libpkgconf3 115s libpsl-dev librtmp-dev libssh2-1-dev libssl-dev libstdc++-14-dev libsz2 115s libtasn1-6-dev libtsan2 libubsan1 libunbound8 libzstd-dev nettle-dev pkgconf 115s pkgconf-bin zlib1g-dev 115s 0 upgraded, 67 newly installed, 0 to remove and 0 not upgraded. 115s Need to get 74.8 MB/74.8 MB of archives. 115s After this operation, 270 MB of additional disk space will be used. 115s Get:1 /tmp/autopkgtest.FyAPDv/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [724 B] 115s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 116s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 116s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [10.6 MB] 117s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-8ubuntu1 [1028 B] 117s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [5452 B] 117s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.1.0-2ubuntu1 [22.5 kB] 117s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 14.2.0-8ubuntu1 [49.7 kB] 117s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB] 117s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 14.2.0-8ubuntu1 [27.8 kB] 117s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 14.2.0-8ubuntu1 [2893 kB] 117s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 14.2.0-8ubuntu1 [1283 kB] 117s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 14.2.0-8ubuntu1 [2686 kB] 118s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 14.2.0-8ubuntu1 [1151 kB] 118s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 14.2.0-8ubuntu1 [1598 kB] 118s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-8ubuntu1 [2594 kB] 118s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [20.9 MB] 120s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-8ubuntu1 [518 kB] 120s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1200 B] 120s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.1.0-2ubuntu1 [4994 B] 120s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-8ubuntu1 [2476 kB] 120s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [12.1 MB] 121s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-8ubuntu1 [19.9 kB] 121s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [958 B] 121s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.1.0-2ubuntu1 [1080 B] 121s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 121s Get:27 http://ftpmaster.internal/ubuntu plucky/universe arm64 hdf5-helpers arm64 1.10.10+repack-4ubuntu3 [16.2 kB] 121s Get:28 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 121s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libbrotli-dev arm64 1.1.0-2build2 [360 kB] 121s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libidn2-dev arm64 2.3.7-2build2 [120 kB] 121s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 121s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 121s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 121s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libnghttp2-dev arm64 1.64.0-1 [120 kB] 121s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libpsl-dev arm64 0.21.2-1.1build1 [77.2 kB] 121s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-2ubuntu7 [10.1 kB] 121s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-2ubuntu7 [335 kB] 121s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10 [140 kB] 121s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libunbound8 arm64 1.20.0-1ubuntu2.1 [431 kB] 121s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libgnutls-dane0t64 arm64 3.8.6-2ubuntu1 [24.0 kB] 121s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libgnutls-openssl27t64 arm64 3.8.6-2ubuntu1 [24.0 kB] 121s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libp11-kit-dev arm64 0.25.5-2ubuntu1 [22.7 kB] 121s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libtasn1-6-dev arm64 4.19.0-3build1 [90.6 kB] 121s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 nettle-dev arm64 3.10-1 [1189 kB] 122s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libgnutls28-dev arm64 3.8.6-2ubuntu1 [1132 kB] 122s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 122s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2build7 [69.4 kB] 122s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libssl-dev arm64 3.3.1-2ubuntu2 [3176 kB] 122s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libssh2-1-dev arm64 1.11.1-1 [286 kB] 122s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libzstd-dev arm64 1.5.6+dfsg-1 [352 kB] 122s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libcurl4-openssl-dev arm64 8.9.1-2ubuntu2 [491 kB] 122s Get:52 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 122s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4ubuntu3 [1207 kB] 122s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB] 122s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-fortran-102t64 arm64 1.10.10+repack-4ubuntu3 [87.2 kB] 122s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4ubuntu3 [56.9 kB] 122s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-fortran-100t64 arm64 1.10.10+repack-4ubuntu3 [31.0 kB] 122s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-cpp-103-1t64 arm64 1.10.10+repack-4ubuntu3 [118 kB] 122s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-cpp-100t64 arm64 1.10.10+repack-4ubuntu3 [11.0 kB] 122s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu2 [163 kB] 122s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu2 [305 kB] 122s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 122s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 122s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 122s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec-dev arm64 1.1.3-1 [19.3 kB] 122s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-dev arm64 1.10.10+repack-4ubuntu3 [3043 kB] 122s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfast5-dev all 0.6.5-8 [50.3 kB] 123s Fetched 74.8 MB in 7s (10.8 MB/s) 123s Selecting previously unselected package libisl23:arm64. 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79931 files and directories currently installed.) 123s Preparing to unpack .../00-libisl23_0.27-1_arm64.deb ... 123s Unpacking libisl23:arm64 (0.27-1) ... 123s Selecting previously unselected package libmpc3:arm64. 123s Preparing to unpack .../01-libmpc3_1.3.1-1build2_arm64.deb ... 123s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 123s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 123s Preparing to unpack .../02-cpp-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ... 123s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 123s Selecting previously unselected package cpp-14. 123s Preparing to unpack .../03-cpp-14_14.2.0-8ubuntu1_arm64.deb ... 123s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 123s Selecting previously unselected package cpp-aarch64-linux-gnu. 123s Preparing to unpack .../04-cpp-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 123s Unpacking cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 123s Selecting previously unselected package cpp. 123s Preparing to unpack .../05-cpp_4%3a14.1.0-2ubuntu1_arm64.deb ... 123s Unpacking cpp (4:14.1.0-2ubuntu1) ... 123s Selecting previously unselected package libcc1-0:arm64. 123s Preparing to unpack .../06-libcc1-0_14.2.0-8ubuntu1_arm64.deb ... 123s Unpacking libcc1-0:arm64 (14.2.0-8ubuntu1) ... 123s Selecting previously unselected package libgomp1:arm64. 123s Preparing to unpack .../07-libgomp1_14.2.0-8ubuntu1_arm64.deb ... 123s Unpacking libgomp1:arm64 (14.2.0-8ubuntu1) ... 123s Selecting previously unselected package libitm1:arm64. 123s Preparing to unpack .../08-libitm1_14.2.0-8ubuntu1_arm64.deb ... 123s Unpacking libitm1:arm64 (14.2.0-8ubuntu1) ... 123s Selecting previously unselected package libasan8:arm64. 124s Preparing to unpack .../09-libasan8_14.2.0-8ubuntu1_arm64.deb ... 124s Unpacking libasan8:arm64 (14.2.0-8ubuntu1) ... 124s Selecting previously unselected package liblsan0:arm64. 124s Preparing to unpack .../10-liblsan0_14.2.0-8ubuntu1_arm64.deb ... 124s Unpacking liblsan0:arm64 (14.2.0-8ubuntu1) ... 124s Selecting previously unselected package libtsan2:arm64. 124s Preparing to unpack .../11-libtsan2_14.2.0-8ubuntu1_arm64.deb ... 124s Unpacking libtsan2:arm64 (14.2.0-8ubuntu1) ... 124s Selecting previously unselected package libubsan1:arm64. 124s Preparing to unpack .../12-libubsan1_14.2.0-8ubuntu1_arm64.deb ... 124s Unpacking libubsan1:arm64 (14.2.0-8ubuntu1) ... 124s Selecting previously unselected package libhwasan0:arm64. 124s Preparing to unpack .../13-libhwasan0_14.2.0-8ubuntu1_arm64.deb ... 124s Unpacking libhwasan0:arm64 (14.2.0-8ubuntu1) ... 124s Selecting previously unselected package libgcc-14-dev:arm64. 124s Preparing to unpack .../14-libgcc-14-dev_14.2.0-8ubuntu1_arm64.deb ... 124s Unpacking libgcc-14-dev:arm64 (14.2.0-8ubuntu1) ... 124s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 124s Preparing to unpack .../15-gcc-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ... 124s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 124s Selecting previously unselected package gcc-14. 125s Preparing to unpack .../16-gcc-14_14.2.0-8ubuntu1_arm64.deb ... 125s Unpacking gcc-14 (14.2.0-8ubuntu1) ... 125s Selecting previously unselected package gcc-aarch64-linux-gnu. 125s Preparing to unpack .../17-gcc-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 125s Unpacking gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 125s Selecting previously unselected package gcc. 125s Preparing to unpack .../18-gcc_4%3a14.1.0-2ubuntu1_arm64.deb ... 125s Unpacking gcc (4:14.1.0-2ubuntu1) ... 125s Selecting previously unselected package libstdc++-14-dev:arm64. 125s Preparing to unpack .../19-libstdc++-14-dev_14.2.0-8ubuntu1_arm64.deb ... 125s Unpacking libstdc++-14-dev:arm64 (14.2.0-8ubuntu1) ... 125s Selecting previously unselected package g++-14-aarch64-linux-gnu. 125s Preparing to unpack .../20-g++-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ... 125s Unpacking g++-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 125s Selecting previously unselected package g++-14. 125s Preparing to unpack .../21-g++-14_14.2.0-8ubuntu1_arm64.deb ... 125s Unpacking g++-14 (14.2.0-8ubuntu1) ... 125s Selecting previously unselected package g++-aarch64-linux-gnu. 125s Preparing to unpack .../22-g++-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 125s Unpacking g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 125s Selecting previously unselected package g++. 125s Preparing to unpack .../23-g++_4%3a14.1.0-2ubuntu1_arm64.deb ... 125s Unpacking g++ (4:14.1.0-2ubuntu1) ... 125s Selecting previously unselected package build-essential. 125s Preparing to unpack .../24-build-essential_12.10ubuntu1_arm64.deb ... 125s Unpacking build-essential (12.10ubuntu1) ... 125s Selecting previously unselected package hdf5-helpers. 125s Preparing to unpack .../25-hdf5-helpers_1.10.10+repack-4ubuntu3_arm64.deb ... 125s Unpacking hdf5-helpers (1.10.10+repack-4ubuntu3) ... 125s Selecting previously unselected package libaec0:arm64. 125s Preparing to unpack .../26-libaec0_1.1.3-1_arm64.deb ... 125s Unpacking libaec0:arm64 (1.1.3-1) ... 125s Selecting previously unselected package libbrotli-dev:arm64. 125s Preparing to unpack .../27-libbrotli-dev_1.1.0-2build2_arm64.deb ... 125s Unpacking libbrotli-dev:arm64 (1.1.0-2build2) ... 125s Selecting previously unselected package libidn2-dev:arm64. 125s Preparing to unpack .../28-libidn2-dev_2.3.7-2build2_arm64.deb ... 125s Unpacking libidn2-dev:arm64 (2.3.7-2build2) ... 126s Selecting previously unselected package libpkgconf3:arm64. 126s Preparing to unpack .../29-libpkgconf3_1.8.1-4_arm64.deb ... 126s Unpacking libpkgconf3:arm64 (1.8.1-4) ... 126s Selecting previously unselected package pkgconf-bin. 126s Preparing to unpack .../30-pkgconf-bin_1.8.1-4_arm64.deb ... 126s Unpacking pkgconf-bin (1.8.1-4) ... 126s Selecting previously unselected package pkgconf:arm64. 126s Preparing to unpack .../31-pkgconf_1.8.1-4_arm64.deb ... 126s Unpacking pkgconf:arm64 (1.8.1-4) ... 126s Selecting previously unselected package libnghttp2-dev:arm64. 126s Preparing to unpack .../32-libnghttp2-dev_1.64.0-1_arm64.deb ... 126s Unpacking libnghttp2-dev:arm64 (1.64.0-1) ... 126s Selecting previously unselected package libpsl-dev:arm64. 126s Preparing to unpack .../33-libpsl-dev_0.21.2-1.1build1_arm64.deb ... 126s Unpacking libpsl-dev:arm64 (0.21.2-1.1build1) ... 126s Selecting previously unselected package libgmpxx4ldbl:arm64. 126s Preparing to unpack .../34-libgmpxx4ldbl_2%3a6.3.0+dfsg-2ubuntu7_arm64.deb ... 126s Unpacking libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-2ubuntu7) ... 126s Selecting previously unselected package libgmp-dev:arm64. 126s Preparing to unpack .../35-libgmp-dev_2%3a6.3.0+dfsg-2ubuntu7_arm64.deb ... 126s Unpacking libgmp-dev:arm64 (2:6.3.0+dfsg-2ubuntu7) ... 126s Selecting previously unselected package libevent-2.1-7t64:arm64. 126s Preparing to unpack .../36-libevent-2.1-7t64_2.1.12-stable-10_arm64.deb ... 126s Unpacking libevent-2.1-7t64:arm64 (2.1.12-stable-10) ... 126s Selecting previously unselected package libunbound8:arm64. 126s Preparing to unpack .../37-libunbound8_1.20.0-1ubuntu2.1_arm64.deb ... 126s Unpacking libunbound8:arm64 (1.20.0-1ubuntu2.1) ... 126s Selecting previously unselected package libgnutls-dane0t64:arm64. 126s Preparing to unpack .../38-libgnutls-dane0t64_3.8.6-2ubuntu1_arm64.deb ... 126s Unpacking libgnutls-dane0t64:arm64 (3.8.6-2ubuntu1) ... 126s Selecting previously unselected package libgnutls-openssl27t64:arm64. 126s Preparing to unpack .../39-libgnutls-openssl27t64_3.8.6-2ubuntu1_arm64.deb ... 126s Unpacking libgnutls-openssl27t64:arm64 (3.8.6-2ubuntu1) ... 126s Selecting previously unselected package libp11-kit-dev:arm64. 126s Preparing to unpack .../40-libp11-kit-dev_0.25.5-2ubuntu1_arm64.deb ... 126s Unpacking libp11-kit-dev:arm64 (0.25.5-2ubuntu1) ... 126s Selecting previously unselected package libtasn1-6-dev:arm64. 126s Preparing to unpack .../41-libtasn1-6-dev_4.19.0-3build1_arm64.deb ... 126s Unpacking libtasn1-6-dev:arm64 (4.19.0-3build1) ... 126s Selecting previously unselected package nettle-dev:arm64. 126s Preparing to unpack .../42-nettle-dev_3.10-1_arm64.deb ... 126s Unpacking nettle-dev:arm64 (3.10-1) ... 126s Selecting previously unselected package libgnutls28-dev:arm64. 126s Preparing to unpack .../43-libgnutls28-dev_3.8.6-2ubuntu1_arm64.deb ... 126s Unpacking libgnutls28-dev:arm64 (3.8.6-2ubuntu1) ... 126s Selecting previously unselected package zlib1g-dev:arm64. 126s Preparing to unpack .../44-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 126s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 126s Selecting previously unselected package librtmp-dev:arm64. 126s Preparing to unpack .../45-librtmp-dev_2.4+20151223.gitfa8646d.1-2build7_arm64.deb ... 126s Unpacking librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2build7) ... 126s Selecting previously unselected package libssl-dev:arm64. 126s Preparing to unpack .../46-libssl-dev_3.3.1-2ubuntu2_arm64.deb ... 126s Unpacking libssl-dev:arm64 (3.3.1-2ubuntu2) ... 126s Selecting previously unselected package libssh2-1-dev:arm64. 127s Preparing to unpack .../47-libssh2-1-dev_1.11.1-1_arm64.deb ... 127s Unpacking libssh2-1-dev:arm64 (1.11.1-1) ... 127s Selecting previously unselected package libzstd-dev:arm64. 127s Preparing to unpack .../48-libzstd-dev_1.5.6+dfsg-1_arm64.deb ... 127s Unpacking libzstd-dev:arm64 (1.5.6+dfsg-1) ... 127s Selecting previously unselected package libcurl4-openssl-dev:arm64. 127s Preparing to unpack .../49-libcurl4-openssl-dev_8.9.1-2ubuntu2_arm64.deb ... 127s Unpacking libcurl4-openssl-dev:arm64 (8.9.1-2ubuntu2) ... 127s Selecting previously unselected package libsz2:arm64. 127s Preparing to unpack .../50-libsz2_1.1.3-1_arm64.deb ... 127s Unpacking libsz2:arm64 (1.1.3-1) ... 127s Selecting previously unselected package libhdf5-103-1t64:arm64. 127s Preparing to unpack .../51-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_arm64.deb ... 127s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 127s Selecting previously unselected package libgfortran5:arm64. 127s Preparing to unpack .../52-libgfortran5_14.2.0-8ubuntu1_arm64.deb ... 127s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ... 127s Selecting previously unselected package libhdf5-fortran-102t64:arm64. 127s Preparing to unpack .../53-libhdf5-fortran-102t64_1.10.10+repack-4ubuntu3_arm64.deb ... 127s Unpacking libhdf5-fortran-102t64:arm64 (1.10.10+repack-4ubuntu3) ... 127s Selecting previously unselected package libhdf5-hl-100t64:arm64. 127s Preparing to unpack .../54-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_arm64.deb ... 127s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 127s Selecting previously unselected package libhdf5-hl-fortran-100t64:arm64. 127s Preparing to unpack .../55-libhdf5-hl-fortran-100t64_1.10.10+repack-4ubuntu3_arm64.deb ... 127s Unpacking libhdf5-hl-fortran-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 127s Selecting previously unselected package libhdf5-cpp-103-1t64:arm64. 127s Preparing to unpack .../56-libhdf5-cpp-103-1t64_1.10.10+repack-4ubuntu3_arm64.deb ... 127s Unpacking libhdf5-cpp-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 127s Selecting previously unselected package libhdf5-hl-cpp-100t64:arm64. 127s Preparing to unpack .../57-libhdf5-hl-cpp-100t64_1.10.10+repack-4ubuntu3_arm64.deb ... 127s Unpacking libhdf5-hl-cpp-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 127s Selecting previously unselected package libjpeg-turbo8:arm64. 127s Preparing to unpack .../58-libjpeg-turbo8_2.1.5-2ubuntu2_arm64.deb ... 127s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ... 127s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 127s Preparing to unpack .../59-libjpeg-turbo8-dev_2.1.5-2ubuntu2_arm64.deb ... 127s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu2) ... 127s Selecting previously unselected package libjpeg8:arm64. 127s Preparing to unpack .../60-libjpeg8_8c-2ubuntu11_arm64.deb ... 127s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 127s Selecting previously unselected package libjpeg8-dev:arm64. 127s Preparing to unpack .../61-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 127s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 127s Selecting previously unselected package libjpeg-dev:arm64. 127s Preparing to unpack .../62-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 127s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 127s Selecting previously unselected package libaec-dev:arm64. 127s Preparing to unpack .../63-libaec-dev_1.1.3-1_arm64.deb ... 127s Unpacking libaec-dev:arm64 (1.1.3-1) ... 127s Selecting previously unselected package libhdf5-dev. 127s Preparing to unpack .../64-libhdf5-dev_1.10.10+repack-4ubuntu3_arm64.deb ... 127s Unpacking libhdf5-dev (1.10.10+repack-4ubuntu3) ... 127s Selecting previously unselected package libfast5-dev. 127s Preparing to unpack .../65-libfast5-dev_0.6.5-8_all.deb ... 127s Unpacking libfast5-dev (0.6.5-8) ... 127s Selecting previously unselected package autopkgtest-satdep. 127s Preparing to unpack .../66-1-autopkgtest-satdep.deb ... 127s Unpacking autopkgtest-satdep (0) ... 128s Setting up libgnutls-openssl27t64:arm64 (3.8.6-2ubuntu1) ... 128s Setting up libzstd-dev:arm64 (1.5.6+dfsg-1) ... 128s Setting up hdf5-helpers (1.10.10+repack-4ubuntu3) ... 128s Setting up libevent-2.1-7t64:arm64 (2.1.12-stable-10) ... 128s Setting up libgomp1:arm64 (14.2.0-8ubuntu1) ... 128s Setting up libaec0:arm64 (1.1.3-1) ... 128s Setting up libpsl-dev:arm64 (0.21.2-1.1build1) ... 128s Setting up libunbound8:arm64 (1.20.0-1ubuntu2.1) ... 128s Setting up libpkgconf3:arm64 (1.8.1-4) ... 128s Setting up libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-2ubuntu7) ... 128s Setting up libgnutls-dane0t64:arm64 (3.8.6-2ubuntu1) ... 128s Setting up libssl-dev:arm64 (3.3.1-2ubuntu2) ... 128s Setting up libmpc3:arm64 (1.3.1-1build2) ... 128s Setting up pkgconf-bin (1.8.1-4) ... 128s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ... 128s Setting up libidn2-dev:arm64 (2.3.7-2build2) ... 128s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ... 128s Setting up libubsan1:arm64 (14.2.0-8ubuntu1) ... 128s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 128s Setting up libhwasan0:arm64 (14.2.0-8ubuntu1) ... 128s Setting up libasan8:arm64 (14.2.0-8ubuntu1) ... 128s Setting up libtsan2:arm64 (14.2.0-8ubuntu1) ... 128s Setting up libisl23:arm64 (0.27-1) ... 128s Setting up libtasn1-6-dev:arm64 (4.19.0-3build1) ... 128s Setting up libcc1-0:arm64 (14.2.0-8ubuntu1) ... 128s Setting up libbrotli-dev:arm64 (1.1.0-2build2) ... 128s Setting up liblsan0:arm64 (14.2.0-8ubuntu1) ... 128s Setting up libp11-kit-dev:arm64 (0.25.5-2ubuntu1) ... 128s Setting up libsz2:arm64 (1.1.3-1) ... 128s Setting up libitm1:arm64 (14.2.0-8ubuntu1) ... 128s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 128s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu2) ... 128s Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-2ubuntu7) ... 128s Setting up nettle-dev:arm64 (3.10-1) ... 128s Setting up libaec-dev:arm64 (1.1.3-1) ... 128s Setting up pkgconf:arm64 (1.8.1-4) ... 128s Setting up libssh2-1-dev:arm64 (1.11.1-1) ... 128s Setting up cpp-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 128s Setting up libgcc-14-dev:arm64 (14.2.0-8ubuntu1) ... 128s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 128s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 128s Setting up libstdc++-14-dev:arm64 (14.2.0-8ubuntu1) ... 128s Setting up libgnutls28-dev:arm64 (3.8.6-2ubuntu1) ... 128s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 128s Setting up libnghttp2-dev:arm64 (1.64.0-1) ... 128s Setting up libhdf5-cpp-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 128s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 128s Setting up libhdf5-fortran-102t64:arm64 (1.10.10+repack-4ubuntu3) ... 128s Setting up cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 128s Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2build7) ... 128s Setting up cpp-14 (14.2.0-8ubuntu1) ... 128s Setting up cpp (4:14.1.0-2ubuntu1) ... 128s Setting up gcc-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 128s Setting up libhdf5-hl-cpp-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 128s Setting up gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 128s Setting up g++-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 128s Setting up libhdf5-hl-fortran-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 128s Setting up gcc-14 (14.2.0-8ubuntu1) ... 128s Setting up libcurl4-openssl-dev:arm64 (8.9.1-2ubuntu2) ... 128s Setting up libhdf5-dev (1.10.10+repack-4ubuntu3) ... 128s update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 128s Setting up g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 128s Setting up g++-14 (14.2.0-8ubuntu1) ... 128s Setting up gcc (4:14.1.0-2ubuntu1) ... 128s Setting up libfast5-dev (0.6.5-8) ... 128s Setting up g++ (4:14.1.0-2ubuntu1) ... 128s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 128s Setting up build-essential (12.10ubuntu1) ... 128s Setting up autopkgtest-satdep (0) ... 128s Processing triggers for man-db (2.12.1-3) ... 128s Processing triggers for install-info (7.1.1-1) ... 129s Processing triggers for libc-bin (2.40-1ubuntu3) ... 133s (Reading database ... 82216 files and directories currently installed.) 133s Removing autopkgtest-satdep (0) ... 134s autopkgtest [09:10:20]: test command1: cp /usr/share/doc/libfast5-dev/examples/* $AUTOPKGTEST_TMP && cd $AUTOPKGTEST_TMP && make FAST5_DIR=/usr/include HDF5_INCLUDE_DIR=/usr/include/hdf5/serial HDF5_LIB_DIR=/usr/lib/$(gcc -print-multiarch)/hdf5/serial 134s autopkgtest [09:10:20]: test command1: [----------------------- 134s g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /usr/include -o f5ls f5ls.cpp -L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl 142s g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /usr/include -o f5ls-full f5ls-full.cpp -L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl 150s g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /usr/include -o hdf5-mod hdf5-mod.cpp -L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl 154s g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /usr/include -o f5-mod f5-mod.cpp -L/usr/lib/aarch64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/aarch64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl 160s autopkgtest [09:10:46]: test command1: -----------------------] 161s autopkgtest [09:10:47]: test command1: - - - - - - - - - - results - - - - - - - - - - 161s command1 PASS 161s autopkgtest [09:10:47]: test command2: preparing testbed 278s autopkgtest [09:12:44]: testbed dpkg architecture: arm64 278s autopkgtest [09:12:44]: testbed apt version: 2.9.8 278s autopkgtest [09:12:44]: @@@@@@@@@@@@@@@@@@@@ test bed setup 279s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 279s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 279s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 279s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 280s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 280s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB] 280s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 280s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB] 280s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB] 280s Fetched 1793 kB in 2s (1076 kB/s) 280s Reading package lists... 283s Reading package lists... 283s Building dependency tree... 283s Reading state information... 284s Calculating upgrade... 285s The following NEW packages will be installed: 285s python3.13-gdbm 285s The following packages will be upgraded: 285s libpython3-stdlib python3 python3-gdbm python3-minimal 285s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 285s Need to get 101 kB of archives. 285s After this operation, 141 kB of additional disk space will be used. 285s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB] 285s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB] 285s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB] 285s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB] 285s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B] 286s Fetched 101 kB in 0s (241 kB/s) 286s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 286s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ... 286s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 286s Setting up python3-minimal (3.12.7-1) ... 286s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 286s Preparing to unpack .../python3_3.12.7-1_arm64.deb ... 286s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 286s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ... 286s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 286s Selecting previously unselected package python3.13-gdbm. 286s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ... 286s Unpacking python3.13-gdbm (3.13.0-2) ... 287s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ... 287s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 287s Setting up python3.13-gdbm (3.13.0-2) ... 287s Setting up libpython3-stdlib:arm64 (3.12.7-1) ... 287s Setting up python3 (3.12.7-1) ... 287s Setting up python3-gdbm:arm64 (3.12.7-1) ... 287s Processing triggers for man-db (2.12.1-3) ... 288s Reading package lists... 288s Building dependency tree... 288s Reading state information... 289s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 289s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 289s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 289s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 290s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 291s Reading package lists... 291s Reading package lists... 291s Building dependency tree... 291s Reading state information... 292s Calculating upgrade... 292s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 292s Reading package lists... 293s Building dependency tree... 293s Reading state information... 294s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 300s Reading package lists... 300s Building dependency tree... 300s Reading state information... 301s Starting pkgProblemResolver with broken count: 0 301s Starting 2 pkgProblemResolver with broken count: 0 301s Done 302s The following additional packages will be installed: 302s libaec0 libhdf5-103-1t64 libsz2 python3-fast5 302s The following NEW packages will be installed: 302s autopkgtest-satdep libaec0 libhdf5-103-1t64 libsz2 python3-fast5 302s 0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. 302s Need to get 1486 kB/1487 kB of archives. 302s After this operation, 5260 kB of additional disk space will be used. 302s Get:1 /tmp/autopkgtest.FyAPDv/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [712 B] 302s Get:2 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 302s Get:3 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 302s Get:4 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4ubuntu3 [1207 kB] 304s Get:5 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fast5 arm64 0.6.5-8 [252 kB] 304s Fetched 1486 kB in 2s (695 kB/s) 305s Selecting previously unselected package libaec0:arm64. 305s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79931 files and directories currently installed.) 305s Preparing to unpack .../libaec0_1.1.3-1_arm64.deb ... 305s Unpacking libaec0:arm64 (1.1.3-1) ... 305s Selecting previously unselected package libsz2:arm64. 305s Preparing to unpack .../libsz2_1.1.3-1_arm64.deb ... 305s Unpacking libsz2:arm64 (1.1.3-1) ... 305s Selecting previously unselected package libhdf5-103-1t64:arm64. 305s Preparing to unpack .../libhdf5-103-1t64_1.10.10+repack-4ubuntu3_arm64.deb ... 305s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 305s Selecting previously unselected package python3-fast5:arm64. 305s Preparing to unpack .../python3-fast5_0.6.5-8_arm64.deb ... 305s Unpacking python3-fast5:arm64 (0.6.5-8) ... 305s Selecting previously unselected package autopkgtest-satdep. 305s Preparing to unpack .../2-autopkgtest-satdep.deb ... 305s Unpacking autopkgtest-satdep (0) ... 305s Setting up libaec0:arm64 (1.1.3-1) ... 305s Setting up libsz2:arm64 (1.1.3-1) ... 305s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 305s Setting up python3-fast5:arm64 (0.6.5-8) ... 305s Setting up autopkgtest-satdep (0) ... 305s Processing triggers for libc-bin (2.40-1ubuntu3) ... 308s (Reading database ... 79962 files and directories currently installed.) 308s Removing autopkgtest-satdep (0) ... 310s autopkgtest [09:13:16]: test command2: python3 -c "import fast5" 310s autopkgtest [09:13:16]: test command2: [----------------------- 311s autopkgtest [09:13:17]: test command2: -----------------------] 311s autopkgtest [09:13:17]: test command2: - - - - - - - - - - results - - - - - - - - - - 311s command2 PASS 312s autopkgtest [09:13:18]: @@@@@@@@@@@@@@@@@@@@ summary 312s command1 PASS 312s command2 PASS 324s nova [W] Skipping flock in bos03-arm64 324s Creating nova instance adt-plucky-arm64-fast5-20241113-090805-juju-7f2275-prod-proposed-migration-environment-15-e1676c9f-8816-4caf-9586-2f9ae0103557 from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)... 324s nova [W] Skipping flock in bos03-arm64 324s Creating nova instance adt-plucky-arm64-fast5-20241113-090805-juju-7f2275-prod-proposed-migration-environment-15-e1676c9f-8816-4caf-9586-2f9ae0103557 from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)...