0s autopkgtest [08:52:13]: starting date and time: 2024-11-13 08:52:13+0000
  0s autopkgtest [08:52:13]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [08:52:13]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.5_8g18x3/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade emperor --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-24.secgroup --name adt-plucky-arm64-emperor-20241113-085213-juju-7f2275-prod-proposed-migration-environment-15-3053d1ba-0a61-4bdf-8ac0-9d9cfc8a700c --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 71s autopkgtest [08:53:24]: testbed dpkg architecture: arm64
 72s autopkgtest [08:53:25]: testbed apt version: 2.9.8
 72s autopkgtest [08:53:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 73s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
 73s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB]
 73s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB]
 73s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB]
 73s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
 73s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB]
 73s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB]
 73s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB]
 73s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB]
 73s Fetched 1793 kB in 1s (2070 kB/s)
 73s Reading package lists...
 76s Reading package lists...
 76s Building dependency tree...
 76s Reading state information...
 77s Calculating upgrade...
 77s The following NEW packages will be installed:
 77s   python3.13-gdbm
 77s The following packages will be upgraded:
 77s   libpython3-stdlib python3 python3-gdbm python3-minimal
 78s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
 78s Need to get 101 kB of archives.
 78s After this operation, 141 kB of additional disk space will be used.
 78s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB]
 78s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB]
 78s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB]
 78s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB]
 78s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B]
 79s Fetched 101 kB in 0s (289 kB/s)
 79s (Reading database ... 
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(Reading database ... 15%
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(Reading database ... 45%
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(Reading database ... 75%
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 79924 files and directories currently installed.)
 79s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ...
 79s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
 79s Setting up python3-minimal (3.12.7-1) ...
 79s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 79924 files and directories currently installed.)
 79s Preparing to unpack .../python3_3.12.7-1_arm64.deb ...
 79s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
 79s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ...
 79s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ...
 79s Selecting previously unselected package python3.13-gdbm.
 79s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ...
 79s Unpacking python3.13-gdbm (3.13.0-2) ...
 79s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ...
 79s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ...
 79s Setting up python3.13-gdbm (3.13.0-2) ...
 79s Setting up libpython3-stdlib:arm64 (3.12.7-1) ...
 79s Setting up python3 (3.12.7-1) ...
 79s Setting up python3-gdbm:arm64 (3.12.7-1) ...
 79s Processing triggers for man-db (2.12.1-3) ...
 80s Reading package lists...
 81s Building dependency tree...
 81s Reading state information...
 82s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 82s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
 82s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
 82s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 82s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
 84s Reading package lists...
 84s Reading package lists...
 84s Building dependency tree...
 84s Reading state information...
 84s Calculating upgrade...
 85s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 85s Reading package lists...
 85s Building dependency tree...
 85s Reading state information...
 86s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 88s autopkgtest [08:53:41]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024
 89s autopkgtest [08:53:42]: @@@@@@@@@@@@@@@@@@@@ apt-source emperor
 92s Get:1 http://ftpmaster.internal/ubuntu plucky/universe emperor 1.0.3+ds-9.1 (dsc) [2367 B]
 92s Get:2 http://ftpmaster.internal/ubuntu plucky/universe emperor 1.0.3+ds-9.1 (tar) [18.0 MB]
 92s Get:3 http://ftpmaster.internal/ubuntu plucky/universe emperor 1.0.3+ds-9.1 (diff) [9144 B]
 92s gpgv: Signature made Mon Jul  1 18:34:32 2024 UTC
 92s gpgv:                using RSA key 406220C8B8552802378CCE411F5C7A8B45564314
 92s gpgv:                issuer "bage@debian.org"
 92s gpgv: Can't check signature: No public key
 92s dpkg-source: warning: cannot verify inline signature for ./emperor_1.0.3+ds-9.1.dsc: no acceptable signature found
 92s autopkgtest [08:53:45]: testing package emperor version 1.0.3+ds-9.1
 93s autopkgtest [08:53:46]: build not needed
 94s autopkgtest [08:53:47]: test run-unit-test: preparing testbed
 95s Reading package lists...
 96s Building dependency tree...
 96s Reading state information...
 96s Starting pkgProblemResolver with broken count: 0
 96s Starting 2 pkgProblemResolver with broken count: 0
 96s Done
 97s The following additional packages will be installed:
 97s   fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gdb libaec0
 97s   libargon2-1 libbabeltrace1 libblas3 libdebuginfod-common libdebuginfod1t64
 97s   libgfortran5 libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 libjs-backbone
 97s   libjs-bootstrap libjs-bootstrap-tour libjs-codemirror libjs-es6-promise
 97s   libjs-jed libjs-jquery libjs-jquery-typeahead libjs-jquery-ui libjs-marked
 97s   libjs-mathjax libjs-moment libjs-requirejs libjs-requirejs-text
 97s   libjs-text-encoding libjs-underscore libjs-xterm liblapack3 liblbfgsb0
 97s   liblzf1 libnorm1t64 libpgm-5.3-0t64 libpython3.13-minimal
 97s   libpython3.13-stdlib libsodium23 libsource-highlight-common
 97s   libsource-highlight4t64 libssw0 libsz2 libzmq5 node-jed
 97s   python-tinycss2-common python3-all python3-argon2 python3-asttokens
 97s   python3-biom-format python3-bleach python3-bs4 python3-click
 97s   python3-colorama python3-comm python3-coverage python3-dateutil
 97s   python3-debugpy python3-decorator python3-defusedxml python3-emperor
 97s   python3-emperor-doc python3-executing python3-fastjsonschema python3-h5py
 97s   python3-h5py-serial python3-hdmedians python3-html5lib python3-iniconfig
 97s   python3-ipykernel python3-ipython python3-ipython-genutils python3-jedi
 97s   python3-jupyter-client python3-jupyter-core python3-jupyterlab-pygments
 97s   python3-matplotlib-inline python3-mistune python3-natsort python3-nbclient
 97s   python3-nbconvert python3-nbformat python3-nest-asyncio python3-notebook
 97s   python3-numpy python3-packaging python3-pandas python3-pandas-lib
 97s   python3-pandocfilters python3-parso python3-patsy python3-pexpect
 97s   python3-platformdirs python3-pluggy python3-prometheus-client
 97s   python3-prompt-toolkit python3-psutil python3-ptyprocess python3-pure-eval
 97s   python3-py python3-pytest python3-scipy python3-send2trash python3-six
 97s   python3-skbio python3-soupsieve python3-stack-data python3-statsmodels
 97s   python3-statsmodels-lib python3-terminado python3-tinycss2 python3-tornado
 97s   python3-traitlets python3-typeshed python3-tz python3-wcwidth
 97s   python3-webencodings python3-zmq python3.13 python3.13-minimal
 97s Suggested packages:
 97s   gdb-doc gdbserver libjs-jquery-lazyload libjs-json libjs-jquery-ui-docs
 97s   fonts-mathjax-extras fonts-stix libjs-mathjax-doc python-argon2-doc
 97s   python-biom-format-doc python-bleach-doc python-coverage-doc
 97s   python-fastjsonschema-doc python-h5py-doc python3-genshi python3-lxml
 97s   python-ipython-doc python-jupyter-client-doc python3-pip python-natsort-doc
 97s   python-nbconvert-doc texlive-fonts-recommended texlive-plain-generic
 97s   texlive-xetex python-notebook-doc gcc gfortran python-numpy-doc python3-dev
 97s   python-pandas-doc python-patsy-doc python-pexpect-doc subversion
 97s   python-scipy-doc python-skbio-doc python-statsmodels-doc
 97s   python-terminado-doc python-tinycss2-doc python3-pycurl python-tornado-doc
 97s   python3-twisted python-traitlets-doc python3.13-venv python3.13-doc
 97s   binfmt-support
 97s Recommended packages:
 97s   libc-dbg javascript-common python3-lxml python3-matplotlib pandoc
 97s   python3-ipywidgets python3-bottleneck python3-numexpr python3-odf
 97s   python3-openpyxl python3-tables g++ | c++-compiler python3-pil
 97s   python3-joblib python3-cvxopt
 97s The following NEW packages will be installed:
 97s   autopkgtest-satdep fonts-font-awesome fonts-glyphicons-halflings
 97s   fonts-mathjax gdb libaec0 libargon2-1 libbabeltrace1 libblas3
 97s   libdebuginfod-common libdebuginfod1t64 libgfortran5 libgomp1
 97s   libhdf5-103-1t64 libhdf5-hl-100t64 libjs-backbone libjs-bootstrap
 97s   libjs-bootstrap-tour libjs-codemirror libjs-es6-promise libjs-jed
 97s   libjs-jquery libjs-jquery-typeahead libjs-jquery-ui libjs-marked
 97s   libjs-mathjax libjs-moment libjs-requirejs libjs-requirejs-text
 97s   libjs-text-encoding libjs-underscore libjs-xterm liblapack3 liblbfgsb0
 97s   liblzf1 libnorm1t64 libpgm-5.3-0t64 libpython3.13-minimal
 97s   libpython3.13-stdlib libsodium23 libsource-highlight-common
 97s   libsource-highlight4t64 libssw0 libsz2 libzmq5 node-jed
 97s   python-tinycss2-common python3-all python3-argon2 python3-asttokens
 97s   python3-biom-format python3-bleach python3-bs4 python3-click
 97s   python3-colorama python3-comm python3-coverage python3-dateutil
 97s   python3-debugpy python3-decorator python3-defusedxml python3-emperor
 97s   python3-emperor-doc python3-executing python3-fastjsonschema python3-h5py
 97s   python3-h5py-serial python3-hdmedians python3-html5lib python3-iniconfig
 97s   python3-ipykernel python3-ipython python3-ipython-genutils python3-jedi
 97s   python3-jupyter-client python3-jupyter-core python3-jupyterlab-pygments
 97s   python3-matplotlib-inline python3-mistune python3-natsort python3-nbclient
 97s   python3-nbconvert python3-nbformat python3-nest-asyncio python3-notebook
 97s   python3-numpy python3-packaging python3-pandas python3-pandas-lib
 97s   python3-pandocfilters python3-parso python3-patsy python3-pexpect
 97s   python3-platformdirs python3-pluggy python3-prometheus-client
 97s   python3-prompt-toolkit python3-psutil python3-ptyprocess python3-pure-eval
 97s   python3-py python3-pytest python3-scipy python3-send2trash python3-six
 97s   python3-skbio python3-soupsieve python3-stack-data python3-statsmodels
 97s   python3-statsmodels-lib python3-terminado python3-tinycss2 python3-tornado
 97s   python3-traitlets python3-typeshed python3-tz python3-wcwidth
 97s   python3-webencodings python3-zmq python3.13 python3.13-minimal
 97s 0 upgraded, 121 newly installed, 0 to remove and 0 not upgraded.
 97s Need to get 72.8 MB/72.8 MB of archives.
 97s After this operation, 364 MB of additional disk space will be used.
 97s Get:1 /tmp/autopkgtest.74phj2/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [740 B]
 98s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libdebuginfod-common all 0.192-4 [15.4 kB]
 98s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB]
 98s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.0-2 [2100 kB]
 98s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
 98s Get:6 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
 98s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
 98s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libbabeltrace1 arm64 1.5.11-4 [159 kB]
 98s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libdebuginfod1t64 arm64 0.192-4 [20.8 kB]
 98s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libsource-highlight-common all 3.1.9-4.3build1 [64.2 kB]
 98s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libsource-highlight4t64 arm64 3.1.9-4.3build1 [243 kB]
 98s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 gdb arm64 15.1-1ubuntu2 [4550 kB]
 98s Get:13 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB]
 98s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libargon2-1 arm64 0~20190702+dfsg-4build1 [20.5 kB]
 98s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB]
 98s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB]
 98s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB]
 98s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B]
 98s Get:19 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4ubuntu3 [1207 kB]
 98s Get:20 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4ubuntu3 [56.9 kB]
 98s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
 98s Get:22 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-backbone all 1.4.1~dfsg+~1.4.15-3 [185 kB]
 98s Get:23 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
 98s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
 98s Get:25 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap-tour all 0.12.0+dfsg-5 [21.4 kB]
 98s Get:26 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-es6-promise all 4.2.8-12 [14.1 kB]
 98s Get:27 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-jed all 1.1.1-4 [15.2 kB]
 99s Get:28 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jed all 1.1.1-4 [2584 B]
 99s Get:29 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-typeahead all 2.11.0+dfsg1-3 [48.9 kB]
 99s Get:30 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
 99s Get:31 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-moment all 2.29.4+ds-1 [147 kB]
 99s Get:32 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-text-encoding all 0.7.0-5 [140 kB]
 99s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-xterm all 5.3.0-3 [476 kB]
 99s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB]
 99s Get:35 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB]
 99s Get:36 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblzf1 arm64 3.6-4 [7426 B]
 99s Get:37 http://ftpmaster.internal/ubuntu plucky/universe arm64 libnorm1t64 arm64 1.5.9+dfsg-3.1build1 [150 kB]
 99s Get:38 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpgm-5.3-0t64 arm64 5.3.128~dfsg-2.1build1 [162 kB]
 99s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [2073 kB]
 99s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libsodium23 arm64 1.0.18-1build3 [119 kB]
 99s Get:41 http://ftpmaster.internal/ubuntu plucky/universe arm64 libssw0 arm64 1.1-15 [21.8 kB]
 99s Get:42 http://ftpmaster.internal/ubuntu plucky/universe arm64 libzmq5 arm64 4.3.5-1build2 [247 kB]
 99s Get:43 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-tinycss2-common all 1.3.0-1 [34.1 kB]
 99s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.0-2 [719 kB]
 99s Get:45 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all arm64 3.12.7-1 [890 B]
 99s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-argon2 arm64 21.1.0-2build1 [21.4 kB]
 99s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-asttokens all 2.4.1-2 [20.8 kB]
 99s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB]
 99s Get:49 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py-serial arm64 3.11.0-5ubuntu1 [1064 kB]
 99s Get:50 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py all 3.11.0-5ubuntu1 [7974 B]
 99s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-colorama all 0.4.6-4 [32.1 kB]
 99s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-click all 8.1.7-2 [79.5 kB]
 99s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-six all 1.16.0-7 [13.1 kB]
 99s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-2 [80.3 kB]
 99s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tz all 2024.1-2 [31.4 kB]
 99s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas-lib arm64 2.2.3+dfsg-5 [4422 kB]
 99s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas all 2.2.3+dfsg-5 [3112 kB]
 99s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB]
 99s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.13.1-5 [16.3 MB]
 99s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-biom-format arm64 2.1.16-1 [137 kB]
 99s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-webencodings all 0.5.1-5 [11.5 kB]
 99s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-html5lib all 1.2-1 [90.8 kB]
 99s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-bleach all 6.1.0-2 [49.6 kB]
 99s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-soupsieve all 2.6-1 [33.0 kB]
 99s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-bs4 all 4.12.3-3 [109 kB]
 99s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB]
 99s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-comm all 0.2.1-1 [7016 B]
 99s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-coverage arm64 7.4.4+dfsg1-0ubuntu2 [148 kB]
 99s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-debugpy arm64 1.8.8+ds-1ubuntu1 [887 kB]
 99s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-defusedxml all 0.7.1-2 [42.0 kB]
 99s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-natsort all 8.0.2-2 [33.8 kB]
100s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.1-1 [41.4 kB]
100s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-patsy all 0.5.6-1 [181 kB]
100s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-statsmodels-lib arm64 0.14.4+dfsg-1 [1627 kB]
100s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-statsmodels all 0.14.4+dfsg-1 [5010 kB]
100s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-hdmedians arm64 0.14.2-5.1build1 [116 kB]
100s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-skbio arm64 0.6.2-3 [1391 kB]
100s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-emperor all 1.0.3+ds-9.1 [133 kB]
100s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-emperor-doc all 1.0.3+ds-9.1 [122 kB]
100s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-executing all 2.1.0-0.1 [24.4 kB]
100s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fastjsonschema all 2.20.0-1 [20.1 kB]
100s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B]
100s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-parso all 0.8.3-1 [67.2 kB]
100s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-typeshed all 0.0~git20231111.6764465-3 [1274 kB]
100s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-jedi all 0.19.1+ds1-1 [693 kB]
100s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-matplotlib-inline all 0.1.6-2 [8784 B]
100s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-ptyprocess all 0.7.0-6 [14.8 kB]
100s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pexpect all 4.9-2 [48.1 kB]
100s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-wcwidth all 0.2.13+dfsg1-1 [26.3 kB]
100s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-prompt-toolkit all 3.0.48-1 [256 kB]
100s Get:91 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pure-eval all 0.2.3-1 [11.4 kB]
100s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-stack-data all 0.6.3-1 [22.0 kB]
100s Get:93 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ipython all 8.20.0-1ubuntu1 [561 kB]
100s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-platformdirs all 4.3.6-1 [16.8 kB]
100s Get:95 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-jupyter-core all 5.7.2-4 [28.0 kB]
100s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-psutil arm64 5.9.8-2build2 [196 kB]
100s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tornado arm64 6.4.1-3 [299 kB]
100s Get:98 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-py all 1.11.0-2 [72.7 kB]
100s Get:99 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-zmq arm64 24.0.1-5build1 [280 kB]
100s Get:100 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-jupyter-client all 8.6.2-3 [78.1 kB]
100s Get:101 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-nest-asyncio all 1.5.4-1 [6256 B]
100s Get:102 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ipykernel all 6.29.5-1 [82.5 kB]
107s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ipython-genutils all 0.2.0-7 [22.0 kB]
143s Ign:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ipython-genutils all 0.2.0-7
144s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-jupyterlab-pygments all 0.2.2-3 [6054 B]
144s Get:105 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mistune all 3.0.2-2 [32.9 kB]
144s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-nbformat all 5.9.1-1 [41.2 kB]
144s Get:107 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-nbclient all 0.8.0-1 [55.6 kB]
144s Get:108 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandocfilters all 1.5.1-1 [23.6 kB]
144s Get:109 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-tinycss2 all 1.3.0-1 [19.6 kB]
144s Get:110 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-nbconvert all 7.16.4-2 [139 kB]
144s Get:111 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-codemirror all 5.65.0+~cs5.83.9-3 [755 kB]
144s Get:112 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-marked all 4.2.3+ds+~4.0.7-3 [36.2 kB]
144s Get:113 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
144s Get:114 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-requirejs all 2.3.7+ds+~2.1.37-1 [201 kB]
144s Get:115 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-requirejs-text all 2.0.12-1.1 [9056 B]
144s Get:116 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-terminado all 0.18.1-1 [13.2 kB]
144s Get:117 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-prometheus-client all 0.19.0+ds1-1 [41.7 kB]
144s Get:118 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-send2trash all 1.8.2-1 [15.5 kB]
144s Get:119 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-notebook all 6.4.13-2 [1618 kB]
144s Get:120 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB]
144s Get:121 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB]
144s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ipython-genutils all 0.2.0-7 [22.0 kB]
145s Preconfiguring packages ...
145s Fetched 72.8 MB in 47s (1545 kB/s)
145s Selecting previously unselected package libdebuginfod-common.
145s (Reading database ... 
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145s Preparing to unpack .../000-libdebuginfod-common_0.192-4_all.deb ...
145s Unpacking libdebuginfod-common (0.192-4) ...
145s Selecting previously unselected package libpython3.13-minimal:arm64.
145s Preparing to unpack .../001-libpython3.13-minimal_3.13.0-2_arm64.deb ...
145s Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ...
145s Selecting previously unselected package python3.13-minimal.
145s Preparing to unpack .../002-python3.13-minimal_3.13.0-2_arm64.deb ...
145s Unpacking python3.13-minimal (3.13.0-2) ...
145s Selecting previously unselected package fonts-font-awesome.
145s Preparing to unpack .../003-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
145s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
146s Selecting previously unselected package fonts-glyphicons-halflings.
146s Preparing to unpack .../004-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
146s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
146s Selecting previously unselected package fonts-mathjax.
146s Preparing to unpack .../005-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
146s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
146s Selecting previously unselected package libbabeltrace1:arm64.
146s Preparing to unpack .../006-libbabeltrace1_1.5.11-4_arm64.deb ...
146s Unpacking libbabeltrace1:arm64 (1.5.11-4) ...
146s Selecting previously unselected package libdebuginfod1t64:arm64.
146s Preparing to unpack .../007-libdebuginfod1t64_0.192-4_arm64.deb ...
146s Unpacking libdebuginfod1t64:arm64 (0.192-4) ...
146s Selecting previously unselected package libsource-highlight-common.
146s Preparing to unpack .../008-libsource-highlight-common_3.1.9-4.3build1_all.deb ...
146s Unpacking libsource-highlight-common (3.1.9-4.3build1) ...
146s Selecting previously unselected package libsource-highlight4t64:arm64.
146s Preparing to unpack .../009-libsource-highlight4t64_3.1.9-4.3build1_arm64.deb ...
146s Unpacking libsource-highlight4t64:arm64 (3.1.9-4.3build1) ...
146s Selecting previously unselected package gdb.
146s Preparing to unpack .../010-gdb_15.1-1ubuntu2_arm64.deb ...
146s Unpacking gdb (15.1-1ubuntu2) ...
146s Selecting previously unselected package libaec0:arm64.
146s Preparing to unpack .../011-libaec0_1.1.3-1_arm64.deb ...
146s Unpacking libaec0:arm64 (1.1.3-1) ...
146s Selecting previously unselected package libargon2-1:arm64.
146s Preparing to unpack .../012-libargon2-1_0~20190702+dfsg-4build1_arm64.deb ...
146s Unpacking libargon2-1:arm64 (0~20190702+dfsg-4build1) ...
146s Selecting previously unselected package libblas3:arm64.
146s Preparing to unpack .../013-libblas3_3.12.0-3build2_arm64.deb ...
146s Unpacking libblas3:arm64 (3.12.0-3build2) ...
146s Selecting previously unselected package libgfortran5:arm64.
146s Preparing to unpack .../014-libgfortran5_14.2.0-8ubuntu1_arm64.deb ...
146s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ...
146s Selecting previously unselected package libgomp1:arm64.
146s Preparing to unpack .../015-libgomp1_14.2.0-8ubuntu1_arm64.deb ...
146s Unpacking libgomp1:arm64 (14.2.0-8ubuntu1) ...
147s Selecting previously unselected package libsz2:arm64.
147s Preparing to unpack .../016-libsz2_1.1.3-1_arm64.deb ...
147s Unpacking libsz2:arm64 (1.1.3-1) ...
147s Selecting previously unselected package libhdf5-103-1t64:arm64.
147s Preparing to unpack .../017-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_arm64.deb ...
147s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ...
147s Selecting previously unselected package libhdf5-hl-100t64:arm64.
147s Preparing to unpack .../018-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_arm64.deb ...
147s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ...
147s Selecting previously unselected package libjs-underscore.
147s Preparing to unpack .../019-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ...
147s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
147s Selecting previously unselected package libjs-backbone.
147s Preparing to unpack .../020-libjs-backbone_1.4.1~dfsg+~1.4.15-3_all.deb ...
147s Unpacking libjs-backbone (1.4.1~dfsg+~1.4.15-3) ...
147s Selecting previously unselected package libjs-bootstrap.
147s Preparing to unpack .../021-libjs-bootstrap_3.4.1+dfsg-3_all.deb ...
147s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ...
147s Selecting previously unselected package libjs-jquery.
147s Preparing to unpack .../022-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
147s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
147s Selecting previously unselected package libjs-bootstrap-tour.
147s Preparing to unpack .../023-libjs-bootstrap-tour_0.12.0+dfsg-5_all.deb ...
147s Unpacking libjs-bootstrap-tour (0.12.0+dfsg-5) ...
147s Selecting previously unselected package libjs-es6-promise.
147s Preparing to unpack .../024-libjs-es6-promise_4.2.8-12_all.deb ...
147s Unpacking libjs-es6-promise (4.2.8-12) ...
147s Selecting previously unselected package node-jed.
147s Preparing to unpack .../025-node-jed_1.1.1-4_all.deb ...
147s Unpacking node-jed (1.1.1-4) ...
147s Selecting previously unselected package libjs-jed.
147s Preparing to unpack .../026-libjs-jed_1.1.1-4_all.deb ...
147s Unpacking libjs-jed (1.1.1-4) ...
147s Selecting previously unselected package libjs-jquery-typeahead.
147s Preparing to unpack .../027-libjs-jquery-typeahead_2.11.0+dfsg1-3_all.deb ...
147s Unpacking libjs-jquery-typeahead (2.11.0+dfsg1-3) ...
147s Selecting previously unselected package libjs-jquery-ui.
147s Preparing to unpack .../028-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
147s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
147s Selecting previously unselected package libjs-moment.
147s Preparing to unpack .../029-libjs-moment_2.29.4+ds-1_all.deb ...
147s Unpacking libjs-moment (2.29.4+ds-1) ...
147s Selecting previously unselected package libjs-text-encoding.
147s Preparing to unpack .../030-libjs-text-encoding_0.7.0-5_all.deb ...
147s Unpacking libjs-text-encoding (0.7.0-5) ...
147s Selecting previously unselected package libjs-xterm.
147s Preparing to unpack .../031-libjs-xterm_5.3.0-3_all.deb ...
147s Unpacking libjs-xterm (5.3.0-3) ...
147s Selecting previously unselected package liblapack3:arm64.
147s Preparing to unpack .../032-liblapack3_3.12.0-3build2_arm64.deb ...
147s Unpacking liblapack3:arm64 (3.12.0-3build2) ...
148s Selecting previously unselected package liblbfgsb0:arm64.
148s Preparing to unpack .../033-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ...
148s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ...
148s Selecting previously unselected package liblzf1:arm64.
148s Preparing to unpack .../034-liblzf1_3.6-4_arm64.deb ...
148s Unpacking liblzf1:arm64 (3.6-4) ...
148s Selecting previously unselected package libnorm1t64:arm64.
148s Preparing to unpack .../035-libnorm1t64_1.5.9+dfsg-3.1build1_arm64.deb ...
148s Unpacking libnorm1t64:arm64 (1.5.9+dfsg-3.1build1) ...
148s Selecting previously unselected package libpgm-5.3-0t64:arm64.
148s Preparing to unpack .../036-libpgm-5.3-0t64_5.3.128~dfsg-2.1build1_arm64.deb ...
148s Unpacking libpgm-5.3-0t64:arm64 (5.3.128~dfsg-2.1build1) ...
148s Selecting previously unselected package libpython3.13-stdlib:arm64.
148s Preparing to unpack .../037-libpython3.13-stdlib_3.13.0-2_arm64.deb ...
148s Unpacking libpython3.13-stdlib:arm64 (3.13.0-2) ...
148s Selecting previously unselected package libsodium23:arm64.
148s Preparing to unpack .../038-libsodium23_1.0.18-1build3_arm64.deb ...
148s Unpacking libsodium23:arm64 (1.0.18-1build3) ...
148s Selecting previously unselected package libssw0:arm64.
148s Preparing to unpack .../039-libssw0_1.1-15_arm64.deb ...
148s Unpacking libssw0:arm64 (1.1-15) ...
148s Selecting previously unselected package libzmq5:arm64.
148s Preparing to unpack .../040-libzmq5_4.3.5-1build2_arm64.deb ...
148s Unpacking libzmq5:arm64 (4.3.5-1build2) ...
148s Selecting previously unselected package python-tinycss2-common.
148s Preparing to unpack .../041-python-tinycss2-common_1.3.0-1_all.deb ...
148s Unpacking python-tinycss2-common (1.3.0-1) ...
148s Selecting previously unselected package python3.13.
148s Preparing to unpack .../042-python3.13_3.13.0-2_arm64.deb ...
148s Unpacking python3.13 (3.13.0-2) ...
148s Selecting previously unselected package python3-all.
148s Preparing to unpack .../043-python3-all_3.12.7-1_arm64.deb ...
148s Unpacking python3-all (3.12.7-1) ...
148s Selecting previously unselected package python3-argon2.
148s Preparing to unpack .../044-python3-argon2_21.1.0-2build1_arm64.deb ...
148s Unpacking python3-argon2 (21.1.0-2build1) ...
148s Selecting previously unselected package python3-asttokens.
148s Preparing to unpack .../045-python3-asttokens_2.4.1-2_all.deb ...
148s Unpacking python3-asttokens (2.4.1-2) ...
148s Selecting previously unselected package python3-numpy.
148s Preparing to unpack .../046-python3-numpy_1%3a1.26.4+ds-11build1_arm64.deb ...
148s Unpacking python3-numpy (1:1.26.4+ds-11build1) ...
149s Selecting previously unselected package python3-h5py-serial.
149s Preparing to unpack .../047-python3-h5py-serial_3.11.0-5ubuntu1_arm64.deb ...
149s Unpacking python3-h5py-serial (3.11.0-5ubuntu1) ...
149s Selecting previously unselected package python3-h5py.
149s Preparing to unpack .../048-python3-h5py_3.11.0-5ubuntu1_all.deb ...
149s Unpacking python3-h5py (3.11.0-5ubuntu1) ...
149s Selecting previously unselected package python3-colorama.
149s Preparing to unpack .../049-python3-colorama_0.4.6-4_all.deb ...
149s Unpacking python3-colorama (0.4.6-4) ...
149s Selecting previously unselected package python3-click.
149s Preparing to unpack .../050-python3-click_8.1.7-2_all.deb ...
149s Unpacking python3-click (8.1.7-2) ...
149s Selecting previously unselected package python3-six.
149s Preparing to unpack .../051-python3-six_1.16.0-7_all.deb ...
149s Unpacking python3-six (1.16.0-7) ...
149s Selecting previously unselected package python3-dateutil.
149s Preparing to unpack .../052-python3-dateutil_2.9.0-2_all.deb ...
149s Unpacking python3-dateutil (2.9.0-2) ...
149s Selecting previously unselected package python3-tz.
149s Preparing to unpack .../053-python3-tz_2024.1-2_all.deb ...
149s Unpacking python3-tz (2024.1-2) ...
149s Selecting previously unselected package python3-pandas-lib:arm64.
149s Preparing to unpack .../054-python3-pandas-lib_2.2.3+dfsg-5_arm64.deb ...
149s Unpacking python3-pandas-lib:arm64 (2.2.3+dfsg-5) ...
149s Selecting previously unselected package python3-pandas.
149s Preparing to unpack .../055-python3-pandas_2.2.3+dfsg-5_all.deb ...
149s Unpacking python3-pandas (2.2.3+dfsg-5) ...
150s Selecting previously unselected package python3-decorator.
150s Preparing to unpack .../056-python3-decorator_5.1.1-5_all.deb ...
150s Unpacking python3-decorator (5.1.1-5) ...
150s Selecting previously unselected package python3-scipy.
150s Preparing to unpack .../057-python3-scipy_1.13.1-5_arm64.deb ...
150s Unpacking python3-scipy (1.13.1-5) ...
150s Selecting previously unselected package python3-biom-format.
150s Preparing to unpack .../058-python3-biom-format_2.1.16-1_arm64.deb ...
150s Unpacking python3-biom-format (2.1.16-1) ...
150s Selecting previously unselected package python3-webencodings.
150s Preparing to unpack .../059-python3-webencodings_0.5.1-5_all.deb ...
150s Unpacking python3-webencodings (0.5.1-5) ...
150s Selecting previously unselected package python3-html5lib.
150s Preparing to unpack .../060-python3-html5lib_1.2-1_all.deb ...
150s Unpacking python3-html5lib (1.2-1) ...
151s Selecting previously unselected package python3-bleach.
151s Preparing to unpack .../061-python3-bleach_6.1.0-2_all.deb ...
151s Unpacking python3-bleach (6.1.0-2) ...
151s Selecting previously unselected package python3-soupsieve.
151s Preparing to unpack .../062-python3-soupsieve_2.6-1_all.deb ...
151s Unpacking python3-soupsieve (2.6-1) ...
151s Selecting previously unselected package python3-bs4.
151s Preparing to unpack .../063-python3-bs4_4.12.3-3_all.deb ...
151s Unpacking python3-bs4 (4.12.3-3) ...
151s Selecting previously unselected package python3-traitlets.
151s Preparing to unpack .../064-python3-traitlets_5.14.3+really5.14.3-1_all.deb ...
151s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ...
151s Selecting previously unselected package python3-comm.
151s Preparing to unpack .../065-python3-comm_0.2.1-1_all.deb ...
151s Unpacking python3-comm (0.2.1-1) ...
151s Selecting previously unselected package python3-coverage.
151s Preparing to unpack .../066-python3-coverage_7.4.4+dfsg1-0ubuntu2_arm64.deb ...
151s Unpacking python3-coverage (7.4.4+dfsg1-0ubuntu2) ...
151s Selecting previously unselected package python3-debugpy.
151s Preparing to unpack .../067-python3-debugpy_1.8.8+ds-1ubuntu1_arm64.deb ...
151s Unpacking python3-debugpy (1.8.8+ds-1ubuntu1) ...
151s Selecting previously unselected package python3-defusedxml.
151s Preparing to unpack .../068-python3-defusedxml_0.7.1-2_all.deb ...
151s Unpacking python3-defusedxml (0.7.1-2) ...
151s Selecting previously unselected package python3-natsort.
151s Preparing to unpack .../069-python3-natsort_8.0.2-2_all.deb ...
151s Unpacking python3-natsort (8.0.2-2) ...
151s Selecting previously unselected package python3-packaging.
151s Preparing to unpack .../070-python3-packaging_24.1-1_all.deb ...
151s Unpacking python3-packaging (24.1-1) ...
151s Selecting previously unselected package python3-patsy.
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151s Unpacking python3-patsy (0.5.6-1) ...
151s Selecting previously unselected package python3-statsmodels-lib:arm64.
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151s Unpacking python3-statsmodels-lib:arm64 (0.14.4+dfsg-1) ...
151s Selecting previously unselected package python3-statsmodels.
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151s Unpacking python3-statsmodels (0.14.4+dfsg-1) ...
152s Selecting previously unselected package python3-hdmedians.
152s Preparing to unpack .../074-python3-hdmedians_0.14.2-5.1build1_arm64.deb ...
152s Unpacking python3-hdmedians (0.14.2-5.1build1) ...
152s Selecting previously unselected package python3-skbio.
152s Preparing to unpack .../075-python3-skbio_0.6.2-3_arm64.deb ...
152s Unpacking python3-skbio (0.6.2-3) ...
152s Selecting previously unselected package python3-emperor.
152s Preparing to unpack .../076-python3-emperor_1.0.3+ds-9.1_all.deb ...
152s Unpacking python3-emperor (1.0.3+ds-9.1) ...
152s Selecting previously unselected package python3-emperor-doc.
152s Preparing to unpack .../077-python3-emperor-doc_1.0.3+ds-9.1_all.deb ...
152s Unpacking python3-emperor-doc (1.0.3+ds-9.1) ...
152s Selecting previously unselected package python3-executing.
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152s Unpacking python3-executing (2.1.0-0.1) ...
152s Selecting previously unselected package python3-fastjsonschema.
152s Preparing to unpack .../079-python3-fastjsonschema_2.20.0-1_all.deb ...
152s Unpacking python3-fastjsonschema (2.20.0-1) ...
152s Selecting previously unselected package python3-iniconfig.
152s Preparing to unpack .../080-python3-iniconfig_1.1.1-2_all.deb ...
152s Unpacking python3-iniconfig (1.1.1-2) ...
152s Selecting previously unselected package python3-parso.
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152s Unpacking python3-parso (0.8.3-1) ...
152s Selecting previously unselected package python3-typeshed.
152s Preparing to unpack .../082-python3-typeshed_0.0~git20231111.6764465-3_all.deb ...
152s Unpacking python3-typeshed (0.0~git20231111.6764465-3) ...
153s Selecting previously unselected package python3-jedi.
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153s Unpacking python3-jedi (0.19.1+ds1-1) ...
153s Selecting previously unselected package python3-matplotlib-inline.
153s Preparing to unpack .../084-python3-matplotlib-inline_0.1.6-2_all.deb ...
153s Unpacking python3-matplotlib-inline (0.1.6-2) ...
153s Selecting previously unselected package python3-ptyprocess.
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154s Unpacking python3-ptyprocess (0.7.0-6) ...
154s Selecting previously unselected package python3-pexpect.
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154s Unpacking python3-pexpect (4.9-2) ...
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154s Unpacking python3-wcwidth (0.2.13+dfsg1-1) ...
154s Selecting previously unselected package python3-prompt-toolkit.
154s Preparing to unpack .../088-python3-prompt-toolkit_3.0.48-1_all.deb ...
154s Unpacking python3-prompt-toolkit (3.0.48-1) ...
154s Selecting previously unselected package python3-pure-eval.
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154s Unpacking python3-pure-eval (0.2.3-1) ...
154s Selecting previously unselected package python3-stack-data.
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154s Selecting previously unselected package python3-ipython.
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154s Unpacking python3-ipython (8.20.0-1ubuntu1) ...
154s Selecting previously unselected package python3-platformdirs.
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154s Unpacking python3-platformdirs (4.3.6-1) ...
154s Selecting previously unselected package python3-jupyter-core.
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154s Unpacking python3-jupyter-core (5.7.2-4) ...
154s Selecting previously unselected package python3-psutil.
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154s Unpacking python3-psutil (5.9.8-2build2) ...
154s Selecting previously unselected package python3-tornado.
154s Preparing to unpack .../095-python3-tornado_6.4.1-3_arm64.deb ...
154s Unpacking python3-tornado (6.4.1-3) ...
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154s Unpacking python3-py (1.11.0-2) ...
154s Selecting previously unselected package python3-zmq.
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157s Setting up libjs-jquery-typeahead (2.11.0+dfsg1-3) ...
157s Setting up python3-iniconfig (1.1.1-2) ...
157s Setting up python3-tornado (6.4.1-3) ...
159s Setting up libnorm1t64:arm64 (1.5.9+dfsg-3.1build1) ...
159s Setting up python3-pure-eval (0.2.3-1) ...
159s Setting up python3-send2trash (1.8.2-1) ...
159s Setting up fonts-mathjax (2.7.9+dfsg-1) ...
159s Setting up libsodium23:arm64 (1.0.18-1build3) ...
159s Setting up libjs-mathjax (2.7.9+dfsg-1) ...
159s Setting up python3-py (1.11.0-2) ...
160s Setting up libdebuginfod-common (0.192-4) ...
160s Setting up libjs-requirejs-text (2.0.12-1.1) ...
160s Setting up python3-parso (0.8.3-1) ...
160s Setting up python3-colorama (0.4.6-4) ...
160s Setting up python3-defusedxml (0.7.1-2) ...
161s Setting up python3-ipython-genutils (0.2.0-7) ...
161s Setting up python3-asttokens (2.4.1-2) ...
162s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
162s Setting up libargon2-1:arm64 (0~20190702+dfsg-4build1) ...
162s Setting up python3-coverage (7.4.4+dfsg1-0ubuntu2) ...
162s Setting up libjs-moment (2.29.4+ds-1) ...
162s Setting up python3-pandocfilters (1.5.1-1) ...
162s Setting up libgomp1:arm64 (14.2.0-8ubuntu1) ...
162s Setting up python3-click (8.1.7-2) ...
163s Setting up libjs-requirejs (2.3.7+ds+~2.1.37-1) ...
163s Setting up libjs-es6-promise (4.2.8-12) ...
163s Setting up libjs-text-encoding (0.7.0-5) ...
163s Setting up python3-webencodings (0.5.1-5) ...
163s Setting up libaec0:arm64 (1.1.3-1) ...
163s Setting up python3-platformdirs (4.3.6-1) ...
163s Setting up python3-psutil (5.9.8-2build2) ...
164s Setting up libsource-highlight-common (3.1.9-4.3build1) ...
164s Setting up python3-tz (2024.1-2) ...
164s Setting up python3-natsort (8.0.2-2) ...
165s Setting up python3-jupyterlab-pygments (0.2.2-3) ...
165s Setting up python3-six (1.16.0-7) ...
165s Setting up libpython3.13-minimal:arm64 (3.13.0-2) ...
165s Setting up libpgm-5.3-0t64:arm64 (5.3.128~dfsg-2.1build1) ...
165s Setting up python3-decorator (5.1.1-5) ...
165s Setting up libblas3:arm64 (3.12.0-3build2) ...
165s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
165s Setting up python3-packaging (24.1-1) ...
166s Setting up python3-wcwidth (0.2.13+dfsg1-1) ...
166s Setting up node-jed (1.1.1-4) ...
166s Setting up python3-typeshed (0.0~git20231111.6764465-3) ...
166s Setting up python3-executing (2.1.0-0.1) ...
166s Setting up libjs-xterm (5.3.0-3) ...
166s Setting up python3-nest-asyncio (1.5.4-1) ...
167s Setting up liblzf1:arm64 (3.6-4) ...
167s Setting up libjs-codemirror (5.65.0+~cs5.83.9-3) ...
167s Setting up libjs-jed (1.1.1-4) ...
167s Setting up python3-html5lib (1.2-1) ...
167s Setting up libbabeltrace1:arm64 (1.5.11-4) ...
167s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ...
167s Setting up python3-pluggy (1.5.0-1) ...
168s Setting up python3-fastjsonschema (2.20.0-1) ...
168s Setting up python3-traitlets (5.14.3+really5.14.3-1) ...
168s Setting up python-tinycss2-common (1.3.0-1) ...
168s Setting up python3-argon2 (21.1.0-2build1) ...
169s Setting up python3.13-minimal (3.13.0-2) ...
170s Setting up python3-dateutil (2.9.0-2) ...
170s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
170s Setting up python3-mistune (3.0.2-2) ...
170s Setting up libpython3.13-stdlib:arm64 (3.13.0-2) ...
170s Setting up python3-stack-data (0.6.3-1) ...
171s Setting up libssw0:arm64 (1.1-15) ...
171s Setting up python3-soupsieve (2.6-1) ...
171s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
171s Setting up python3-jupyter-core (5.7.2-4) ...
171s Setting up libsz2:arm64 (1.1.3-1) ...
171s Setting up libjs-bootstrap (3.4.1+dfsg-3) ...
171s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
171s Setting up python3-ptyprocess (0.7.0-6) ...
172s Setting up libjs-marked (4.2.3+ds+~4.0.7-3) ...
172s Setting up python3-prompt-toolkit (3.0.48-1) ...
173s Setting up libdebuginfod1t64:arm64 (0.192-4) ...
173s Setting up liblapack3:arm64 (3.12.0-3build2) ...
173s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
173s Setting up python3-tinycss2 (1.3.0-1) ...
173s Setting up libzmq5:arm64 (4.3.5-1build2) ...
173s Setting up python3-jedi (0.19.1+ds1-1) ...
174s Setting up python3.13 (3.13.0-2) ...
175s Setting up python3-pytest (8.3.3-1) ...
176s Setting up libjs-bootstrap-tour (0.12.0+dfsg-5) ...
176s Setting up python3-emperor-doc (1.0.3+ds-9.1) ...
176s Setting up python3-all (3.12.7-1) ...
176s Setting up libjs-backbone (1.4.1~dfsg+~1.4.15-3) ...
176s Setting up libsource-highlight4t64:arm64 (3.1.9-4.3build1) ...
176s Setting up python3-nbformat (5.9.1-1) ...
176s Setting up python3-bs4 (4.12.3-3) ...
177s Setting up python3-bleach (6.1.0-2) ...
177s Setting up python3-matplotlib-inline (0.1.6-2) ...
177s Setting up python3-comm (0.2.1-1) ...
178s Setting up python3-prometheus-client (0.19.0+ds1-1) ...
178s Setting up gdb (15.1-1ubuntu2) ...
178s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
178s Setting up python3-pexpect (4.9-2) ...
178s Setting up python3-zmq (24.0.1-5build1) ...
179s Setting up python3-numpy (1:1.26.4+ds-11build1) ...
183s Setting up python3-terminado (0.18.1-1) ...
184s Setting up python3-hdmedians (0.14.2-5.1build1) ...
184s Setting up python3-jupyter-client (8.6.2-3) ...
184s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ...
184s Setting up python3-statsmodels-lib:arm64 (0.14.4+dfsg-1) ...
184s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ...
184s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ...
184s Setting up python3-scipy (1.13.1-5) ...
195s Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-5) ...
195s Setting up python3-h5py-serial (3.11.0-5ubuntu1) ...
196s Setting up python3-debugpy (1.8.8+ds-1ubuntu1) ...
198s Setting up python3-nbclient (0.8.0-1) ...
198s Setting up python3-patsy (0.5.6-1) ...
199s Setting up python3-pandas (2.2.3+dfsg-5) ...
213s Setting up python3-ipython (8.20.0-1ubuntu1) ...
215s Setting up python3-ipykernel (6.29.5-1) ...
215s Setting up python3-h5py (3.11.0-5ubuntu1) ...
216s Setting up python3-nbconvert (7.16.4-2) ...
216s Setting up python3-statsmodels (0.14.4+dfsg-1) ...
225s Setting up python3-notebook (6.4.13-2) ...
226s Setting up python3-biom-format (2.1.16-1) ...
226s Setting up python3-skbio (0.6.2-3) ...
228s Setting up python3-emperor (1.0.3+ds-9.1) ...
229s Setting up autopkgtest-satdep (0) ...
229s Processing triggers for systemd (256.5-2ubuntu4) ...
229s Processing triggers for man-db (2.12.1-3) ...
229s Processing triggers for libc-bin (2.40-1ubuntu3) ...
238s (Reading database ... 104010 files and directories currently installed.)
238s Removing autopkgtest-satdep (0) ...
238s autopkgtest [08:56:11]: test run-unit-test: [-----------------------
238s /tmp/autopkgtest.74phj2/build.XlX/src/debian/tests/run-unit-test: line 13: quilt: command not found
239s Running Tests
239s Testing with python3.13 in /tmp/autopkgtest.74phj2/autopkgtest_tmp:
240s ============================= test session starts ==============================
240s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0
240s rootdir: /tmp/autopkgtest.74phj2/autopkgtest_tmp
240s plugins: typeguard-4.4.1
240s collected 0 items / 6 errors
240s 
240s ==================================== ERRORS ====================================
240s _____________________ ERROR collecting tests/test_core.py ______________________
240s ImportError while importing test module '/tmp/autopkgtest.74phj2/autopkgtest_tmp/tests/test_core.py'.
240s Hint: make sure your test modules/packages have valid Python names.
240s Traceback:
240s /usr/lib/python3/dist-packages/h5py/__init__.py:24: in <module>
240s     from . import _debian_h5py_serial as _h5py
240s /usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py:25: in <module>
240s     from . import _errors
240s E   ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py)
240s 
240s During handling of the above exception, another exception occurred:
240s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
240s     return _bootstrap._gcd_import(name[level:], package, level)
240s tests/test_core.py:13: in <module>
240s     from skbio import OrdinationResults
240s /usr/lib/python3/dist-packages/skbio/__init__.py:12: in <module>
240s     import skbio.io  # noqa
240s /usr/lib/python3/dist-packages/skbio/io/__init__.py:251: in <module>
240s     from .registry import write, read, sniff, create_format, io_registry
240s /usr/lib/python3/dist-packages/skbio/io/registry.py:181: in <module>
240s     from .util import _resolve_file, open_file, open_files, _d as _open_kwargs
240s /usr/lib/python3/dist-packages/skbio/io/util.py:32: in <module>
240s     from skbio.io._iosources import get_io_sources, get_compression_handler
240s /usr/lib/python3/dist-packages/skbio/io/_iosources.py:18: in <module>
240s     from ._fileobject import (
240s /usr/lib/python3/dist-packages/skbio/io/_fileobject.py:10: in <module>
240s     import h5py
240s /usr/lib/python3/dist-packages/h5py/__init__.py:26: in <module>
240s     from . import _debian_h5py_mpi as _h5py
240s E   ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)
240s ____________________ ERROR collecting tests/test_format.py _____________________
240s ImportError while importing test module '/tmp/autopkgtest.74phj2/autopkgtest_tmp/tests/test_format.py'.
240s Hint: make sure your test modules/packages have valid Python names.
240s Traceback:
240s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
240s     from . import multiarray
240s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
240s     from . import overrides
240s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
240s     from numpy.core._multiarray_umath import (
240s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
240s 
240s During handling of the above exception, another exception occurred:
240s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
240s     from numpy.__config__ import show as show_config
240s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
240s     from numpy.core._multiarray_umath import (
240s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
240s     raise ImportError(msg)
240s E   ImportError: 
240s E   
240s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
240s E   
240s E   Importing the numpy C-extensions failed. This error can happen for
240s E   many reasons, often due to issues with your setup or how NumPy was
240s E   installed.
240s E   
240s E   We have compiled some common reasons and troubleshooting tips at:
240s E   
240s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
240s E   
240s E   Please note and check the following:
240s E   
240s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
240s E     * The NumPy version is: "1.26.4"
240s E   
240s E   and make sure that they are the versions you expect.
240s E   Please carefully study the documentation linked above for further help.
240s E   
240s E   Original error was: No module named 'numpy.core._multiarray_umath'
240s 
240s The above exception was the direct cause of the following exception:
240s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
240s     return _bootstrap._gcd_import(name[level:], package, level)
240s tests/test_format.py:10: in <module>
240s     from emperor.format import format_emperor_autograph
240s /usr/lib/python3/dist-packages/emperor/__init__.py:12: in <module>
240s     from emperor.core import Emperor
240s /usr/lib/python3/dist-packages/emperor/core.py:14: in <module>
240s     import numpy as np
240s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
240s     raise ImportError(msg) from e
240s E   ImportError: Error importing numpy: you should not try to import numpy from
240s E           its source directory; please exit the numpy source tree, and relaunch
240s E           your python interpreter from there.
240s ____________________ ERROR collecting tests/test_pandas.py _____________________
240s ImportError while importing test module '/tmp/autopkgtest.74phj2/autopkgtest_tmp/tests/test_pandas.py'.
240s Hint: make sure your test modules/packages have valid Python names.
240s Traceback:
240s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
240s     return _bootstrap._gcd_import(name[level:], package, level)
240s tests/test_pandas.py:12: in <module>
240s     import pandas as pd
240s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in <module>
240s     raise ImportError(
240s E   ImportError: Unable to import required dependencies:
240s E   numpy: Error importing numpy: you should not try to import numpy from
240s E           its source directory; please exit the numpy source tree, and relaunch
240s E           your python interpreter from there.
240s ______ ERROR collecting tests/test_qiime_backports/test_make_3d_plots.py _______
240s ImportError while importing test module '/tmp/autopkgtest.74phj2/autopkgtest_tmp/tests/test_qiime_backports/test_make_3d_plots.py'.
240s Hint: make sure your test modules/packages have valid Python names.
240s Traceback:
240s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
240s     from . import multiarray
240s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
240s     from . import overrides
240s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
240s     from numpy.core._multiarray_umath import (
240s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
240s 
240s During handling of the above exception, another exception occurred:
240s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
240s     from numpy.__config__ import show as show_config
240s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
240s     from numpy.core._multiarray_umath import (
240s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
240s     raise ImportError(msg)
240s E   ImportError: 
240s E   
240s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
240s E   
240s E   Importing the numpy C-extensions failed. This error can happen for
240s E   many reasons, often due to issues with your setup or how NumPy was
240s E   installed.
240s E   
240s E   We have compiled some common reasons and troubleshooting tips at:
240s E   
240s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
240s E   
240s E   Please note and check the following:
240s E   
240s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
240s E     * The NumPy version is: "1.26.4"
240s E   
240s E   and make sure that they are the versions you expect.
240s E   Please carefully study the documentation linked above for further help.
240s E   
240s E   Original error was: No module named 'numpy.core._multiarray_umath'
240s 
240s The above exception was the direct cause of the following exception:
240s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
240s     return _bootstrap._gcd_import(name[level:], package, level)
240s tests/test_qiime_backports/test_make_3d_plots.py:13: in <module>
240s     from numpy import array, nan
240s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
240s     raise ImportError(msg) from e
240s E   ImportError: Error importing numpy: you should not try to import numpy from
240s E           its source directory; please exit the numpy source tree, and relaunch
240s E           your python interpreter from there.
240s ___________ ERROR collecting tests/test_qiime_backports/test_util.py ___________
240s ImportError while importing test module '/tmp/autopkgtest.74phj2/autopkgtest_tmp/tests/test_qiime_backports/test_util.py'.
240s Hint: make sure your test modules/packages have valid Python names.
240s Traceback:
240s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
240s     from . import multiarray
240s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
240s     from . import overrides
240s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
240s     from numpy.core._multiarray_umath import (
240s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
240s 
240s During handling of the above exception, another exception occurred:
240s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
240s     from numpy.__config__ import show as show_config
240s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
240s     from numpy.core._multiarray_umath import (
240s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
240s     raise ImportError(msg)
240s E   ImportError: 
240s E   
240s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
240s E   
240s E   Importing the numpy C-extensions failed. This error can happen for
240s E   many reasons, often due to issues with your setup or how NumPy was
240s E   installed.
240s E   
240s E   We have compiled some common reasons and troubleshooting tips at:
240s E   
240s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
240s E   
240s E   Please note and check the following:
240s E   
240s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
240s E     * The NumPy version is: "1.26.4"
240s E   
240s E   and make sure that they are the versions you expect.
240s E   Please carefully study the documentation linked above for further help.
240s E   
240s E   Original error was: No module named 'numpy.core._multiarray_umath'
240s 
240s The above exception was the direct cause of the following exception:
240s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
240s     return _bootstrap._gcd_import(name[level:], package, level)
240s tests/test_qiime_backports/test_util.py:19: in <module>
240s     from numpy.testing import assert_almost_equal
240s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
240s     raise ImportError(msg) from e
240s E   ImportError: Error importing numpy: you should not try to import numpy from
240s E           its source directory; please exit the numpy source tree, and relaunch
240s E           your python interpreter from there.
240s _____________________ ERROR collecting tests/test_util.py ______________________
240s ImportError while importing test module '/tmp/autopkgtest.74phj2/autopkgtest_tmp/tests/test_util.py'.
240s Hint: make sure your test modules/packages have valid Python names.
240s Traceback:
240s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
240s     return _bootstrap._gcd_import(name[level:], package, level)
240s tests/test_util.py:15: in <module>
240s     import pandas as pd
240s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in <module>
240s     raise ImportError(
240s E   ImportError: Unable to import required dependencies:
240s E   numpy: Error importing numpy: you should not try to import numpy from
240s E           its source directory; please exit the numpy source tree, and relaunch
240s E           your python interpreter from there.
240s =============================== warnings summary ===============================
240s ../../../usr/lib/python3/dist-packages/emperor/__init__.py:9
240s   /usr/lib/python3/dist-packages/emperor/__init__.py:9: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
240s     import pkg_resources
240s 
240s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
240s =========================== short test summary info ============================
240s ERROR tests/test_core.py
240s ERROR tests/test_format.py
240s ERROR tests/test_pandas.py
240s ERROR tests/test_qiime_backports/test_make_3d_plots.py
240s ERROR tests/test_qiime_backports/test_util.py
240s ERROR tests/test_util.py
240s !!!!!!!!!!!!!!!!!!! Interrupted: 6 errors during collection !!!!!!!!!!!!!!!!!!!!
240s ========================= 1 warning, 6 errors in 1.29s =========================
241s autopkgtest [08:56:14]: test run-unit-test: -----------------------]
241s run-unit-test        FAIL non-zero exit status 2
241s autopkgtest [08:56:14]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
241s autopkgtest [08:56:14]: @@@@@@@@@@@@@@@@@@@@ summary
241s run-unit-test        FAIL non-zero exit status 2
271s nova [W] Skipping flock in bos03-arm64
271s Creating nova instance adt-plucky-arm64-emperor-20241113-085213-juju-7f2275-prod-proposed-migration-environment-15-3053d1ba-0a61-4bdf-8ac0-9d9cfc8a700c from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)...