0s autopkgtest [09:05:38]: starting date and time: 2024-11-13 09:05:38+0000 0s autopkgtest [09:05:38]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time 0s autopkgtest [09:05:38]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.2cpv_d0g/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade dolfin --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-12.secgroup --name adt-plucky-arm64-dolfin-20241113-090538-juju-7f2275-prod-proposed-migration-environment-2-d3b8b4f9-a6d5-4cbc-83ee-0abae706bb39 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 98s autopkgtest [09:07:16]: testbed dpkg architecture: arm64 99s autopkgtest [09:07:17]: testbed apt version: 2.9.8 99s autopkgtest [09:07:17]: @@@@@@@@@@@@@@@@@@@@ test bed setup 100s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 100s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 100s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 100s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 100s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 100s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB] 100s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 100s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB] 100s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB] 100s Fetched 1793 kB in 1s (2008 kB/s) 101s Reading package lists... 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 105s Calculating upgrade... 106s The following NEW packages will be installed: 106s python3.13-gdbm 106s The following packages will be upgraded: 106s libpython3-stdlib python3 python3-gdbm python3-minimal 106s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 106s Need to get 101 kB of archives. 106s After this operation, 141 kB of additional disk space will be used. 106s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB] 106s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB] 106s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB] 106s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB] 106s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B] 107s Fetched 101 kB in 0s (277 kB/s) 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 107s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ... 107s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 107s Setting up python3-minimal (3.12.7-1) ... 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 107s Preparing to unpack .../python3_3.12.7-1_arm64.deb ... 107s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 108s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ... 108s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 108s Selecting previously unselected package python3.13-gdbm. 108s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ... 108s Unpacking python3.13-gdbm (3.13.0-2) ... 108s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ... 108s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 108s Setting up python3.13-gdbm (3.13.0-2) ... 108s Setting up libpython3-stdlib:arm64 (3.12.7-1) ... 108s Setting up python3 (3.12.7-1) ... 108s Setting up python3-gdbm:arm64 (3.12.7-1) ... 108s Processing triggers for man-db (2.12.1-3) ... 109s Reading package lists... 110s Building dependency tree... 110s Reading state information... 110s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 111s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 113s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 113s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 113s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 114s Reading package lists... 114s Reading package lists... 114s Building dependency tree... 114s Reading state information... 115s Calculating upgrade... 116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 116s Reading package lists... 116s Building dependency tree... 116s Reading state information... 117s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s autopkgtest [09:07:38]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 120s autopkgtest [09:07:38]: @@@@@@@@@@@@@@@@@@@@ apt-source dolfin 129s Get:1 http://ftpmaster.internal/ubuntu plucky/universe dolfin 2019.2.0~legacy20240219.1c52e83-10ubuntu1 (dsc) [4216 B] 129s Get:2 http://ftpmaster.internal/ubuntu plucky/universe dolfin 2019.2.0~legacy20240219.1c52e83-10ubuntu1 (tar) [10.9 MB] 129s Get:3 http://ftpmaster.internal/ubuntu plucky/universe dolfin 2019.2.0~legacy20240219.1c52e83-10ubuntu1 (diff) [51.3 kB] 129s gpgv: Signature made Tue Oct 8 20:32:28 2024 UTC 129s gpgv: using RSA key 13F9DEC79451BFBBFEE4271D715918026626D3D2 129s gpgv: Can't check signature: No public key 129s dpkg-source: warning: cannot verify inline signature for ./dolfin_2019.2.0~legacy20240219.1c52e83-10ubuntu1.dsc: no acceptable signature found 130s autopkgtest [09:07:48]: testing package dolfin version 2019.2.0~legacy20240219.1c52e83-10ubuntu1 131s autopkgtest [09:07:49]: build not needed 134s autopkgtest [09:07:52]: test test-dolfin-cpp: preparing testbed 136s Reading package lists... 136s Building dependency tree... 136s Reading state information... 137s Starting pkgProblemResolver with broken count: 0 137s Starting 2 pkgProblemResolver with broken count: 0 137s Done 138s The following additional packages will be installed: 138s autoconf automake autopoint autotools-dev build-essential chrpath cmake 138s cmake-data cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-14 138s cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper debugedit 138s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dolfin-bin 138s dolfin-doc doxygen dwz fontconfig fontconfig-config fonts-dejavu-core 138s fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-mathjax g++ g++-14 138s g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 138s gcc-13-aarch64-linux-gnu gcc-13-base gcc-14 gcc-14-aarch64-linux-gnu 138s gcc-aarch64-linux-gnu gettext gfortran gfortran-13 138s gfortran-13-aarch64-linux-gnu gfortran-14 gfortran-14-aarch64-linux-gnu 138s gfortran-aarch64-linux-gnu graphviz icu-devtools intltool-debian libaec-dev 138s libaec0 libamd-comgr2 libamd3 libamdhip64-5 libann0 libaom3 138s libarchive-zip-perl libarpack2-dev libarpack2t64 libasan8 libblas-dev 138s libblas3 libblas64-3 libblis-pthread-dev libblis4-pthread 138s libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-chrono-dev 138s libboost-chrono1.83-dev libboost-chrono1.83.0t64 libboost-date-time1.83-dev 138s libboost-date-time1.83.0 libboost-dev libboost-filesystem-dev 138s libboost-filesystem1.83-dev libboost-filesystem1.83.0 libboost-iostreams-dev 138s libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-math-dev 138s libboost-math1.83-dev libboost-math1.83.0 libboost-mpi-dev 138s libboost-mpi1.83-dev libboost-mpi1.83.0 libboost-program-options-dev 138s libboost-program-options1.83-dev libboost-program-options1.83.0 138s libboost-regex1.83-dev libboost-regex1.83.0 libboost-serialization-dev 138s libboost-serialization1.83-dev libboost-serialization1.83.0 138s libboost-system1.83-dev libboost-system1.83.0 libboost-thread-dev 138s libboost-thread1.83-dev libboost-thread1.83.0 libboost-timer-dev 138s libboost-timer1.83-dev libboost-timer1.83.0 libboost1.83-dev libbrotli-dev 138s libbtf2 libc6-dbg libcairo2 libcamd3 libcc1-0 libccolamd3 libcdt5 libcgraph6 138s libcholmod5 libcolamd3 libcombblas2.0.0t64 libcurl4-openssl-dev libcxsparse4 138s libdatrie1 libde265-0 libdebhelper-perl libdeflate0 libdolfin-dev 138s libdolfin-dev-common libdolfin2019.2t64 libdolfin64-2019.2t64 138s libdolfin64-dev libdrm-amdgpu1 libeigen3-dev libevent-2.1-7t64 libevent-dev 138s libevent-extra-2.1-7t64 libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 138s libexpat1-dev libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 138s libfftw3-long3 libfftw3-mpi-dev libfftw3-mpi3 libfftw3-single3 138s libfile-stripnondeterminism-perl libfmt10 libfontconfig1 libgcc-13-dev 138s libgcc-14-dev libgd3 libgfortran-13-dev libgfortran-14-dev libgfortran5 138s libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 138s libgnutls28-dev libgomp1 libgraphite2-3 libgts-0.7-5t64 libgvc6 libgvpr2 138s libharfbuzz0b libhdf5-mpi-dev libhdf5-openmpi-103-1t64 138s libhdf5-openmpi-cpp-103-1t64 libhdf5-openmpi-dev 138s libhdf5-openmpi-fortran-102t64 libhdf5-openmpi-hl-100t64 138s libhdf5-openmpi-hl-cpp-100t64 libhdf5-openmpi-hl-fortran-100t64 138s libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libhsa-runtime64-1 138s libhsakmt1 libhwasan0 libhwloc-dev libhwloc-plugins libhwloc15 138s libhypre-2.31.0 libhypre-dev libhypre64m-2.31.0 libhypre64m-dev libibmad5 138s libibumad3 libibverbs-dev libice6 libicu-dev libidn2-dev libimagequant0 138s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 138s libjpeg8 libjpeg8-dev libjs-jquery libjs-jquery-ui libjs-mathjax 138s libjs-modernizr libjs-sphinxdoc libjs-underscore libjson-perl libjsoncpp25 138s libklu2 liblab-gamut1 liblapack-dev liblapack3 liblapack64-3 libldl3 138s liblerc4 libllvm17t64 liblsan0 libltdl-dev libltdl7 liblzma-dev libmetis5 138s libmpc3 libmumps-5.6t64 libmumps-64pord-5.6t64 libmumps-dev 138s libmumps-headers-dev libmumps64-dev libmunge2 libnghttp2-dev libnl-3-dev 138s libnl-route-3-dev libnuma-dev libopenblas64-0 libopenblas64-0-pthread 138s libopenblas64-dev libopenblas64-pthread-dev libopenmpi-dev libopenmpi3t64 138s libp11-kit-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 138s libparpack2-dev libparpack2t64 libparu1 libpathplan4 libpciaccess0 138s libpetsc-real-dev libpetsc-real3.20 libpetsc-real3.20-dev 138s libpetsc3.20-dev-common libpetsc64-real-dev libpetsc64-real3.20 138s libpetsc64-real3.20-dev libpixman-1-0 libpkgconf3 libpmix-dev libpmix2t64 138s libpsl-dev libptscotch-7.0 libptscotch-dev libpython3-all-dev libpython3-dev 138s libpython3.12-dev libpython3.13 libpython3.13-dev libpython3.13-minimal 138s libpython3.13-stdlib libraqm0 librbio4 librdmacm1t64 librhash0 librtmp-dev 138s libscalapack-mpi-dev libscalapack-openmpi-dev libscalapack-openmpi2.2 138s libscotch-7.0 libscotch-dev libsharpyuv0 libslepc-real3.20 138s libslepc-real3.20-dev libslepc64-real3.20 libslepc64-real3.20-dev libsm6 138s libspex3 libspqr4 libssh2-1-dev libssl-dev libstdc++-14-dev 138s libsuitesparse-dev libsuitesparse-mongoose3 libsuitesparseconfig7 138s libsuperlu-dev libsuperlu-dist-dev libsuperlu-dist8 libsuperlu6 libsuperlu7 138s libsz2 libtasn1-6-dev libthai-data libthai0 libtiff6 libtool 138s libtrilinos-amesos-13.2 libtrilinos-aztecoo-13.2 libtrilinos-aztecoo-dev 138s libtrilinos-epetra-13.2 libtrilinos-epetraext-13.2 libtrilinos-galeri-13.2 138s libtrilinos-ifpack-13.2 libtrilinos-kokkos-13.2 libtrilinos-ml-13.2 138s libtrilinos-ml-dev libtrilinos-teuchos-13.2 libtrilinos-trilinosss-13.2 138s libtrilinos-trilinosss-dev libtrilinos-triutils-13.2 libtrilinos-zoltan-13.2 138s libtrilinos-zoltan-dev libtsan2 libubsan1 libucx0 libumfpack6 libunbound8 138s libwebp7 libx11-dev libxapian30 libxau-dev libxaw7 libxcb-render0 138s libxcb-shm0 libxcb1-dev libxdmcp-dev libxml2-dev libxmu6 libxnvctrl0 libxpm4 138s libxrender1 libxt6t64 libyaml-dev libzstd-dev m4 mpi-default-bin 138s mpi-default-dev nettle-dev ocl-icd-libopencl1 ocl-icd-opencl-dev 138s opencl-c-headers opencl-clhpp-headers openmpi-bin openmpi-common petsc-dev 138s petsc64-dev pkg-config pkgconf pkgconf-bin po-debconf pybind11-dev 138s python-petsc4py-doc python3-alabaster python3-all python3-all-dev 138s python3-defusedxml python3-dev python3-dijitso python3-docutils 138s python3-dolfin python3-dolfin-real python3-dolfin64-real python3-ffc 138s python3-fiat python3-imagesize python3-mpi4py python3-mpmath python3-numpy 138s python3-packaging python3-petsc4py python3-petsc4py-64-real 138s python3-petsc4py-64-real3.20 python3-petsc4py-real python3-petsc4py-real3.20 138s python3-pkgconfig python3-ply python3-pusimp python3-pybind11 python3-roman 138s python3-six python3-slepc4py python3-slepc4py-64-real 138s python3-slepc4py-64-real3.20 python3-slepc4py-real python3-slepc4py-real3.20 138s python3-snowballstemmer python3-sphinx python3-sphinx-rtd-theme 138s python3-sphinxcontrib.jquery python3-sympy python3-ufl-legacy python3.12-dev 138s python3.13 python3.13-dev python3.13-minimal sgml-base slepc-dev slepc64-dev 138s sphinx-common sphinx-rtd-theme-common swig trilinos-dev valgrind 138s valgrind-mpi x11-common x11proto-dev xml-core xorg-sgml-doctools xtrans-dev 138s zlib1g-dev 138s Suggested packages: 138s autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format 138s elpa-cmake-mode ninja-build cpp-doc gcc-13-locales cpp-13-doc gcc-14-locales 138s cpp-14-doc dh-make flit python3-build python3-installer python3-wheel 138s doxygen-latex doxygen-doc doxygen-gui gcc-14-doc gcc-multilib manpages-dev 138s flex bison gdb gcc-doc gcc-13-doc gdb-aarch64-linux-gnu gettext-doc 138s libasprintf-dev libgettextpo-dev gfortran-doc gfortran-13-doc 138s libcoarrays-dev gfortran-14-doc gsfonts graphviz-doc liblapack-doc 138s libboost-doc libboost-graph1.83-dev libboost1.83-doc 138s libboost-container1.83-dev libboost-context1.83-dev 138s libboost-contract1.83-dev libboost-coroutine1.83-dev 138s libboost-exception1.83-dev libboost-fiber1.83-dev 138s libboost-graph-parallel1.83-dev libboost-json1.83-dev 138s libboost-locale1.83-dev libboost-log1.83-dev libboost-mpi-python1.83-dev 138s libboost-nowide1.83-dev libboost-numpy1.83-dev libboost-python1.83-dev 138s libboost-random1.83-dev libboost-stacktrace1.83-dev libboost-test1.83-dev 138s libboost-type-erasure1.83-dev libboost-url1.83-dev libboost-wave1.83-dev 138s libboost1.83-tools-dev libmpfrc++-dev libntl-dev libcurl4-doc libidn-dev 138s libkrb5-dev libldap2-dev libeigen3-doc libfftw3-doc libgd-tools gmp-doc 138s libgmp10-doc libmpfr-dev dns-root-data gnutls-bin gnutls-doc libhdf5-doc 138s libheif-plugin-x265 libheif-plugin-ffmpegdec libheif-plugin-jpegdec 138s libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc 138s libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc icu-doc 138s libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc 138s libtool-doc liblzma-doc libnghttp2-doc openmpi-doc p11-kit-doc 138s libpetsc-real3.20-dbg petsc3.20-doc libluminate-dev libpetsc64-real3.20-dbg 138s scalapack-doc libslepc3.20-dev-examples slepc3.20-doc libssl-doc 138s libstdc++-14-doc libsuperlu-doc gcj-jdk trilinos-doc libx11-doc xapian-tools 138s libxcb-doc libyaml-doc m4-doc opencl-icd opencl-clhpp-headers-doc 138s libmail-box-perl pybind11-doc python-dijitso-doc docutils-doc 138s fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french 138s texlive-latex-base texlive-latex-recommended python-mpmath-doc python3-gmpy2 138s python3-matplotlib python-numpy-doc python3-pytest python-ply-doc 138s python-slepc4py-doc python3-stemmer dvipng dvisvgm fonts-freefont-otf 138s imagemagick-6.q16 latexmk sphinx-doc tex-gyre texlive-fonts-extra 138s texlive-fonts-recommended texlive-latex-extra texlive-plain-generic 138s python-sympy-doc python-ufl-legacy-doc python3.13-venv python3.13-doc 138s binfmt-support sgml-base-doc swig-doc swig-examples valgrind-dbg kcachegrind 138s alleyoop valkyrie 138s Recommended packages: 138s python3-matplotlib fonts-liberation libarchive-cpio-perl libgts-bin 138s libheif-plugin-aomenc javascript-common libjson-xs-perl 138s libcoarrays-openmpi-dev libpetsc3.20-dev-examples ksh | mksh | pdksh | zsh 138s libgraphblas-dev libtasn1-doc libgl-dev libmail-sendmail-perl libpaper-utils 138s python3-pil isympy-common gdb 138s The following NEW packages will be installed: 138s autoconf automake autopkgtest-satdep autopoint autotools-dev build-essential 138s chrpath cmake cmake-data cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-14 138s cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper debugedit 138s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dolfin-bin 138s dolfin-doc doxygen dwz fontconfig fontconfig-config fonts-dejavu-core 138s fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-mathjax g++ g++-14 138s g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 138s gcc-13-aarch64-linux-gnu gcc-13-base gcc-14 gcc-14-aarch64-linux-gnu 138s gcc-aarch64-linux-gnu gettext gfortran gfortran-13 138s gfortran-13-aarch64-linux-gnu gfortran-14 gfortran-14-aarch64-linux-gnu 138s gfortran-aarch64-linux-gnu graphviz icu-devtools intltool-debian libaec-dev 138s libaec0 libamd-comgr2 libamd3 libamdhip64-5 libann0 libaom3 138s libarchive-zip-perl libarpack2-dev libarpack2t64 libasan8 libblas-dev 138s libblas3 libblas64-3 libblis-pthread-dev libblis4-pthread 138s libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-chrono-dev 138s libboost-chrono1.83-dev libboost-chrono1.83.0t64 libboost-date-time1.83-dev 138s libboost-date-time1.83.0 libboost-dev libboost-filesystem-dev 138s libboost-filesystem1.83-dev libboost-filesystem1.83.0 libboost-iostreams-dev 138s libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-math-dev 138s libboost-math1.83-dev libboost-math1.83.0 libboost-mpi-dev 138s libboost-mpi1.83-dev libboost-mpi1.83.0 libboost-program-options-dev 138s libboost-program-options1.83-dev libboost-program-options1.83.0 138s libboost-regex1.83-dev libboost-regex1.83.0 libboost-serialization-dev 138s libboost-serialization1.83-dev libboost-serialization1.83.0 138s libboost-system1.83-dev libboost-system1.83.0 libboost-thread-dev 138s libboost-thread1.83-dev libboost-thread1.83.0 libboost-timer-dev 138s libboost-timer1.83-dev libboost-timer1.83.0 libboost1.83-dev libbrotli-dev 138s libbtf2 libc6-dbg libcairo2 libcamd3 libcc1-0 libccolamd3 libcdt5 libcgraph6 138s libcholmod5 libcolamd3 libcombblas2.0.0t64 libcurl4-openssl-dev libcxsparse4 138s libdatrie1 libde265-0 libdebhelper-perl libdeflate0 libdolfin-dev 138s libdolfin-dev-common libdolfin2019.2t64 libdolfin64-2019.2t64 138s libdolfin64-dev libdrm-amdgpu1 libeigen3-dev libevent-2.1-7t64 libevent-dev 138s libevent-extra-2.1-7t64 libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 138s libexpat1-dev libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 138s libfftw3-long3 libfftw3-mpi-dev libfftw3-mpi3 libfftw3-single3 138s libfile-stripnondeterminism-perl libfmt10 libfontconfig1 libgcc-13-dev 138s libgcc-14-dev libgd3 libgfortran-13-dev libgfortran-14-dev libgfortran5 138s libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 138s libgnutls28-dev libgomp1 libgraphite2-3 libgts-0.7-5t64 libgvc6 libgvpr2 138s libharfbuzz0b libhdf5-mpi-dev libhdf5-openmpi-103-1t64 138s libhdf5-openmpi-cpp-103-1t64 libhdf5-openmpi-dev 138s libhdf5-openmpi-fortran-102t64 libhdf5-openmpi-hl-100t64 138s libhdf5-openmpi-hl-cpp-100t64 libhdf5-openmpi-hl-fortran-100t64 138s libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libhsa-runtime64-1 138s libhsakmt1 libhwasan0 libhwloc-dev libhwloc-plugins libhwloc15 138s libhypre-2.31.0 libhypre-dev libhypre64m-2.31.0 libhypre64m-dev libibmad5 138s libibumad3 libibverbs-dev libice6 libicu-dev libidn2-dev libimagequant0 138s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 138s libjpeg8 libjpeg8-dev libjs-jquery libjs-jquery-ui libjs-mathjax 138s libjs-modernizr libjs-sphinxdoc libjs-underscore libjson-perl libjsoncpp25 138s libklu2 liblab-gamut1 liblapack-dev liblapack3 liblapack64-3 libldl3 138s liblerc4 libllvm17t64 liblsan0 libltdl-dev libltdl7 liblzma-dev libmetis5 138s libmpc3 libmumps-5.6t64 libmumps-64pord-5.6t64 libmumps-dev 138s libmumps-headers-dev libmumps64-dev libmunge2 libnghttp2-dev libnl-3-dev 138s libnl-route-3-dev libnuma-dev libopenblas64-0 libopenblas64-0-pthread 138s libopenblas64-dev libopenblas64-pthread-dev libopenmpi-dev libopenmpi3t64 138s libp11-kit-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 138s libparpack2-dev libparpack2t64 libparu1 libpathplan4 libpciaccess0 138s libpetsc-real-dev libpetsc-real3.20 libpetsc-real3.20-dev 138s libpetsc3.20-dev-common libpetsc64-real-dev libpetsc64-real3.20 138s libpetsc64-real3.20-dev libpixman-1-0 libpkgconf3 libpmix-dev libpmix2t64 138s libpsl-dev libptscotch-7.0 libptscotch-dev libpython3-all-dev libpython3-dev 138s libpython3.12-dev libpython3.13 libpython3.13-dev libpython3.13-minimal 138s libpython3.13-stdlib libraqm0 librbio4 librdmacm1t64 librhash0 librtmp-dev 138s libscalapack-mpi-dev libscalapack-openmpi-dev libscalapack-openmpi2.2 138s libscotch-7.0 libscotch-dev libsharpyuv0 libslepc-real3.20 138s libslepc-real3.20-dev libslepc64-real3.20 libslepc64-real3.20-dev libsm6 138s libspex3 libspqr4 libssh2-1-dev libssl-dev libstdc++-14-dev 138s libsuitesparse-dev libsuitesparse-mongoose3 libsuitesparseconfig7 138s libsuperlu-dev libsuperlu-dist-dev libsuperlu-dist8 libsuperlu6 libsuperlu7 138s libsz2 libtasn1-6-dev libthai-data libthai0 libtiff6 libtool 138s libtrilinos-amesos-13.2 libtrilinos-aztecoo-13.2 libtrilinos-aztecoo-dev 138s libtrilinos-epetra-13.2 libtrilinos-epetraext-13.2 libtrilinos-galeri-13.2 138s libtrilinos-ifpack-13.2 libtrilinos-kokkos-13.2 libtrilinos-ml-13.2 138s libtrilinos-ml-dev libtrilinos-teuchos-13.2 libtrilinos-trilinosss-13.2 138s libtrilinos-trilinosss-dev libtrilinos-triutils-13.2 libtrilinos-zoltan-13.2 138s libtrilinos-zoltan-dev libtsan2 libubsan1 libucx0 libumfpack6 libunbound8 138s libwebp7 libx11-dev libxapian30 libxau-dev libxaw7 libxcb-render0 138s libxcb-shm0 libxcb1-dev libxdmcp-dev libxml2-dev libxmu6 libxnvctrl0 libxpm4 138s libxrender1 libxt6t64 libyaml-dev libzstd-dev m4 mpi-default-bin 138s mpi-default-dev nettle-dev ocl-icd-libopencl1 ocl-icd-opencl-dev 138s opencl-c-headers opencl-clhpp-headers openmpi-bin openmpi-common petsc-dev 138s petsc64-dev pkg-config pkgconf pkgconf-bin po-debconf pybind11-dev 138s python-petsc4py-doc python3-alabaster python3-all python3-all-dev 138s python3-defusedxml python3-dev python3-dijitso python3-docutils 138s python3-dolfin python3-dolfin-real python3-dolfin64-real python3-ffc 138s python3-fiat python3-imagesize python3-mpi4py python3-mpmath python3-numpy 138s python3-packaging python3-petsc4py python3-petsc4py-64-real 138s python3-petsc4py-64-real3.20 python3-petsc4py-real python3-petsc4py-real3.20 138s python3-pkgconfig python3-ply python3-pusimp python3-pybind11 python3-roman 138s python3-six python3-slepc4py python3-slepc4py-64-real 138s python3-slepc4py-64-real3.20 python3-slepc4py-real python3-slepc4py-real3.20 138s python3-snowballstemmer python3-sphinx python3-sphinx-rtd-theme 138s python3-sphinxcontrib.jquery python3-sympy python3-ufl-legacy python3.12-dev 138s python3.13 python3.13-dev python3.13-minimal sgml-base slepc-dev slepc64-dev 138s sphinx-common sphinx-rtd-theme-common swig trilinos-dev valgrind 138s valgrind-mpi x11-common x11proto-dev xml-core xorg-sgml-doctools xtrans-dev 138s zlib1g-dev 138s 0 upgraded, 418 newly installed, 0 to remove and 0 not upgraded. 138s Need to get 438 MB/438 MB of archives. 138s After this operation, 1862 MB of additional disk space will be used. 138s Get:1 /tmp/autopkgtest.ShOyTP/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [1196 B] 138s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-lato all 2.015-1 [2781 kB] 139s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB] 139s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.0-2 [2100 kB] 139s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 sgml-base all 1.31 [11.4 kB] 139s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 m4 arm64 1.4.19-4build1 [240 kB] 139s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 autoconf all 2.72-3 [382 kB] 139s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 autotools-dev all 20220109.1 [44.9 kB] 139s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 139s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 autopoint all 0.22.5-2 [616 kB] 139s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 139s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 139s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [10.6 MB] 139s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-8ubuntu1 [1028 B] 139s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [5452 B] 139s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.1.0-2ubuntu1 [22.5 kB] 139s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 14.2.0-8ubuntu1 [49.7 kB] 139s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB] 139s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 14.2.0-8ubuntu1 [27.8 kB] 139s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 14.2.0-8ubuntu1 [2893 kB] 139s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 14.2.0-8ubuntu1 [1283 kB] 139s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 14.2.0-8ubuntu1 [2686 kB] 139s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 14.2.0-8ubuntu1 [1151 kB] 139s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 14.2.0-8ubuntu1 [1598 kB] 140s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-8ubuntu1 [2594 kB] 140s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [20.9 MB] 140s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-8ubuntu1 [518 kB] 140s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1200 B] 140s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.1.0-2ubuntu1 [4994 B] 140s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-8ubuntu1 [2476 kB] 141s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [12.1 MB] 142s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-8ubuntu1 [19.9 kB] 142s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [958 B] 142s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.1.0-2ubuntu1 [1080 B] 142s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 142s Get:36 http://ftpmaster.internal/ubuntu plucky/universe arm64 chrpath arm64 0.18-1 [13.2 kB] 142s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libjsoncpp25 arm64 1.9.5-6build1 [78.2 kB] 142s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 librhash0 arm64 1.4.3-3build1 [126 kB] 142s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 cmake-data all 3.30.3-1 [2246 kB] 142s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 cmake arm64 3.30.3-1 [10.9 MB] 143s Get:41 http://ftpmaster.internal/ubuntu plucky/universe arm64 gcc-13-base arm64 13.3.0-6ubuntu2 [51.4 kB] 143s Get:42 http://ftpmaster.internal/ubuntu plucky/universe arm64 cpp-13-aarch64-linux-gnu arm64 13.3.0-6ubuntu2 [9535 kB] 143s Get:43 http://ftpmaster.internal/ubuntu plucky/universe arm64 cpp-13 arm64 13.3.0-6ubuntu2 [1030 B] 143s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 143s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgcc-13-dev arm64 13.3.0-6ubuntu2 [2456 kB] 143s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 gcc-13-aarch64-linux-gnu arm64 13.3.0-6ubuntu2 [18.7 MB] 144s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 gcc-13 arm64 13.3.0-6ubuntu2 [484 kB] 144s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libtool all 2.4.7-7build1 [166 kB] 144s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-autoreconf all 20 [16.1 kB] 144s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] 144s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 144s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-strip-nondeterminism all 1.14.0-1 [5058 B] 144s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 debugedit arm64 1:5.1-1 [45.9 kB] 144s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 dwz arm64 0.15-1build6 [113 kB] 144s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 gettext arm64 0.22.5-2 [930 kB] 144s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 144s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] 144s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 debhelper all 13.20ubuntu1 [893 kB] 144s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 dh-python all 6.20241024 [112 kB] 144s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 xml-core all 0.19 [20.3 kB] 144s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 docutils-common all 0.21.2+dfsg-2 [131 kB] 144s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfmt10 arm64 10.1.1+ds1-4 [75.6 kB] 144s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 libxapian30 arm64 1.4.25-1 [672 kB] 144s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 doxygen arm64 1.9.8+ds-2ubuntu2 [5022 kB] 144s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 144s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 144s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB] 144s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB] 144s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-1.1ubuntu2 [190 kB] 144s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 145s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 145s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB] 145s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-8ubuntu1 [498 kB] 145s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [11.4 MB] 146s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-8ubuntu1 [11.9 kB] 146s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1022 B] 146s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.1.0-2ubuntu1 [1162 B] 146s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgfortran-13-dev arm64 13.3.0-6ubuntu2 [481 kB] 146s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 gfortran-13-aarch64-linux-gnu arm64 13.3.0-6ubuntu2 [10.2 MB] 146s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 gfortran-13 arm64 13.3.0-6ubuntu2 [13.9 kB] 146s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 libann0 arm64 1.1.2+doc-9build1 [25.7 kB] 146s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcdt5 arm64 2.42.4-2build3 [21.3 kB] 146s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcgraph6 arm64 2.42.4-2build3 [45.1 kB] 146s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [16.3 kB] 146s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libaom3 arm64 3.11.0~rc1-1 [1837 kB] 146s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif-plugin-aomdec arm64 1.18.1-2 [10.9 kB] 146s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 libde265-0 arm64 1.0.15-1build4 [146 kB] 146s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif-plugin-libde265 arm64 1.18.1-2 [8612 B] 146s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif1 arm64 1.18.1-2 [274 kB] 146s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 146s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu2 [163 kB] 146s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 146s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 146s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.0.1-1 [487 kB] 146s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 libraqm0 arm64 0.10.1-1build1 [14.7 kB] 146s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.22-1 [46.2 kB] 146s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 146s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu2 [154 kB] 146s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.4.0-0.1 [192 kB] 146s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 146s Get:101 http://ftpmaster.internal/ubuntu plucky/main arm64 libxpm4 arm64 1:3.5.17-1build2 [35.1 kB] 146s Get:102 http://ftpmaster.internal/ubuntu plucky/main arm64 libgd3 arm64 2.3.3-12ubuntu3 [122 kB] 147s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgts-0.7-5t64 arm64 0.7.6+darcs121130-5.2build1 [154 kB] 147s Get:104 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 147s Get:105 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 147s Get:106 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 147s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 147s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 147s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 libltdl7 arm64 2.4.7-7build1 [40.4 kB] 147s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 147s Get:111 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 147s Get:112 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 147s Get:113 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.54.0+ds-3 [234 kB] 147s Get:114 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.54.0+ds-3 [48.9 kB] 147s Get:115 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.54.0+ds-3 [27.5 kB] 147s Get:116 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpathplan4 arm64 2.42.4-2build3 [23.4 kB] 147s Get:117 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgvc6 arm64 2.42.4-2build3 [706 kB] 147s Get:118 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgvpr2 arm64 2.42.4-2build3 [187 kB] 147s Get:119 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblab-gamut1 arm64 2.42.4-2build3 [1840 kB] 147s Get:120 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 147s Get:121 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 147s Get:122 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 147s Get:123 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 147s Get:124 http://ftpmaster.internal/ubuntu plucky/main arm64 libxmu6 arm64 2:1.1.3-3build2 [47.5 kB] 147s Get:125 http://ftpmaster.internal/ubuntu plucky/main arm64 libxaw7 arm64 2:1.0.16-1 [184 kB] 147s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 graphviz arm64 2.42.4-2build3 [619 kB] 147s Get:127 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 74.2-1ubuntu4 [210 kB] 147s Get:128 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 147s Get:129 http://ftpmaster.internal/ubuntu plucky/universe arm64 libllvm17t64 arm64 1:17.0.6-18 [24.9 MB] 148s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3build2 [14.1 MB] 148s Get:131 http://ftpmaster.internal/ubuntu plucky/main arm64 libsuitesparseconfig7 arm64 1:7.8.3+dfsg-2 [13.1 kB] 148s Get:132 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamd3 arm64 1:7.8.3+dfsg-2 [26.1 kB] 148s Get:133 http://ftpmaster.internal/ubuntu plucky/main arm64 libdrm-amdgpu1 arm64 2.4.123-1 [20.9 kB] 148s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhsakmt1 arm64 5.7.0-1build1 [63.6 kB] 148s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhsa-runtime64-1 arm64 5.7.1-2build1 [286 kB] 148s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamdhip64-5 arm64 5.7.1-5 [9704 kB] 149s Get:137 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 149s Get:138 http://ftpmaster.internal/ubuntu plucky/universe arm64 libblis4-pthread arm64 0.9.0-1 [551 kB] 149s Get:139 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 149s Get:140 http://ftpmaster.internal/ubuntu plucky/universe arm64 libarpack2t64 arm64 3.9.1-1.1ubuntu1 [94.3 kB] 149s Get:141 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.0-3build2 [120 kB] 149s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 libblis-pthread-dev arm64 0.9.0-1 [631 kB] 149s Get:143 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.0-3build2 [4419 kB] 149s Get:144 http://ftpmaster.internal/ubuntu plucky/universe arm64 libarpack2-dev arm64 3.9.1-1.1ubuntu1 [108 kB] 149s Get:145 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas64-3 arm64 3.12.0-3build2 [144 kB] 149s Get:146 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost1.83-dev arm64 1.83.0-3.2ubuntu2 [10.7 MB] 149s Get:147 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-atomic1.83.0 arm64 1.83.0-3.2ubuntu2 [239 kB] 149s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-atomic1.83-dev arm64 1.83.0-3.2ubuntu2 [234 kB] 149s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-chrono1.83.0t64 arm64 1.83.0-3.2ubuntu2 [244 kB] 149s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-chrono1.83-dev arm64 1.83.0-3.2ubuntu2 [247 kB] 149s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-chrono-dev arm64 1.83.0.2ubuntu1 [4832 B] 149s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-date-time1.83.0 arm64 1.83.0-3.2ubuntu2 [236 kB] 149s Get:153 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-serialization1.83.0 arm64 1.83.0-3.2ubuntu2 [338 kB] 149s Get:154 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-serialization1.83-dev arm64 1.83.0-3.2ubuntu2 [392 kB] 149s Get:155 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-date-time1.83-dev arm64 1.83.0-3.2ubuntu2 [239 kB] 149s Get:156 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-dev arm64 1.83.0.2ubuntu1 [4468 B] 149s Get:157 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-filesystem1.83.0 arm64 1.83.0-3.2ubuntu2 [282 kB] 149s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-system1.83.0 arm64 1.83.0-3.2ubuntu2 [236 kB] 149s Get:159 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-system1.83-dev arm64 1.83.0-3.2ubuntu2 [231 kB] 149s Get:160 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-filesystem1.83-dev arm64 1.83.0-3.2ubuntu2 [302 kB] 149s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-filesystem-dev arm64 1.83.0.2ubuntu1 [4256 B] 149s Get:162 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-regex1.83.0 arm64 1.83.0-3.2ubuntu2 [331 kB] 149s Get:163 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 74.2-1ubuntu4 [11.9 MB] 150s Get:164 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-regex1.83-dev arm64 1.83.0-3.2ubuntu2 [351 kB] 150s Get:165 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-iostreams1.83.0 arm64 1.83.0-3.2ubuntu2 [259 kB] 150s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-iostreams1.83-dev arm64 1.83.0-3.2ubuntu2 [266 kB] 150s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-iostreams-dev arm64 1.83.0.2ubuntu1 [4212 B] 150s Get:168 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-math1.83.0 arm64 1.83.0-3.2ubuntu2 [444 kB] 150s Get:169 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-math1.83-dev arm64 1.83.0-3.2ubuntu2 [590 kB] 150s Get:170 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-math-dev arm64 1.83.0.2ubuntu1 [4434 B] 150s Get:171 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10 [7922 B] 150s Get:172 http://ftpmaster.internal/ubuntu plucky/main arm64 librdmacm1t64 arm64 52.0-2ubuntu1 [71.5 kB] 150s Get:173 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfabric1 arm64 1.17.0-3ubuntu1 [542 kB] 150s Get:174 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhwloc15 arm64 2.11.2-1 [162 kB] 150s Get:175 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmunge2 arm64 0.5.15-4build1 [14.9 kB] 150s Get:176 http://ftpmaster.internal/ubuntu plucky/main arm64 libpciaccess0 arm64 0.17-3build1 [18.9 kB] 150s Get:177 http://ftpmaster.internal/ubuntu plucky/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu4 [12.4 kB] 150s Get:178 http://ftpmaster.internal/ubuntu plucky/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1build1 [37.6 kB] 150s Get:179 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhwloc-plugins arm64 2.11.2-1 [15.8 kB] 150s Get:180 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpmix2t64 arm64 5.0.3-2 [662 kB] 150s Get:181 http://ftpmaster.internal/ubuntu plucky/main arm64 libibumad3 arm64 52.0-2ubuntu1 [29.3 kB] 150s Get:182 http://ftpmaster.internal/ubuntu plucky/main arm64 libibmad5 arm64 52.0-2ubuntu1 [43.1 kB] 150s Get:183 http://ftpmaster.internal/ubuntu plucky/universe arm64 libucx0 arm64 1.17.0+ds-3build1 [1093 kB] 150s Get:184 http://ftpmaster.internal/ubuntu plucky/universe arm64 libopenmpi3t64 arm64 4.1.6-13.3ubuntu2 [2487 kB] 150s Get:185 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-mpi1.83.0 arm64 1.83.0-3.2ubuntu2 [269 kB] 150s Get:186 http://ftpmaster.internal/ubuntu plucky/universe arm64 openmpi-common all 4.1.6-13.3ubuntu2 [170 kB] 150s Get:187 http://ftpmaster.internal/ubuntu plucky/main arm64 libnl-3-dev arm64 3.7.0-0.3build2 [105 kB] 150s Get:188 http://ftpmaster.internal/ubuntu plucky/main arm64 libnl-route-3-dev arm64 3.7.0-0.3build2 [226 kB] 150s Get:189 http://ftpmaster.internal/ubuntu plucky/main arm64 libibverbs-dev arm64 52.0-2ubuntu1 [697 kB] 150s Get:190 http://ftpmaster.internal/ubuntu plucky/main arm64 libnuma-dev arm64 2.0.18-1build1 [39.6 kB] 150s Get:191 http://ftpmaster.internal/ubuntu plucky/main arm64 libltdl-dev arm64 2.4.7-7build1 [170 kB] 150s Get:192 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhwloc-dev arm64 2.11.2-1 [265 kB] 150s Get:193 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10 [140 kB] 150s Get:194 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-extra-2.1-7t64 arm64 2.1.12-stable-10 [62.0 kB] 150s Get:195 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-openssl-2.1-7t64 arm64 2.1.12-stable-10 [14.7 kB] 150s Get:196 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-dev arm64 2.1.12-stable-10 [283 kB] 150s Get:197 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 150s Get:198 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpmix-dev arm64 5.0.3-2 [4051 kB] 150s Get:199 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 150s Get:200 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 150s Get:201 http://ftpmaster.internal/ubuntu plucky/universe arm64 openmpi-bin arm64 4.1.6-13.3ubuntu2 [114 kB] 150s Get:202 http://ftpmaster.internal/ubuntu plucky/universe arm64 libopenmpi-dev arm64 4.1.6-13.3ubuntu2 [864 kB] 150s Get:203 http://ftpmaster.internal/ubuntu plucky/universe arm64 mpi-default-dev arm64 1.17 [3104 B] 151s Get:204 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-mpi1.83-dev arm64 1.83.0-3.2ubuntu2 [299 kB] 151s Get:205 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-mpi-dev arm64 1.83.0.2ubuntu1 [4308 B] 151s Get:206 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-program-options1.83.0 arm64 1.83.0-3.2ubuntu2 [318 kB] 151s Get:207 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-program-options1.83-dev arm64 1.83.0-3.2ubuntu2 [391 kB] 151s Get:208 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-program-options-dev arm64 1.83.0.2ubuntu1 [4250 B] 151s Get:209 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-serialization-dev arm64 1.83.0.2ubuntu1 [4442 B] 151s Get:210 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-thread1.83.0 arm64 1.83.0-3.2ubuntu2 [276 kB] 151s Get:211 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-thread1.83-dev arm64 1.83.0-3.2ubuntu2 [283 kB] 151s Get:212 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-thread-dev arm64 1.83.0.2ubuntu1 [4248 B] 151s Get:213 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-timer1.83.0 arm64 1.83.0-3.2ubuntu2 [241 kB] 151s Get:214 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-timer1.83-dev arm64 1.83.0-3.2ubuntu2 [237 kB] 151s Get:215 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-timer-dev arm64 1.83.0.2ubuntu1 [4352 B] 151s Get:216 http://ftpmaster.internal/ubuntu plucky/main arm64 libbrotli-dev arm64 1.1.0-2build2 [360 kB] 151s Get:217 http://ftpmaster.internal/ubuntu plucky/universe arm64 libbtf2 arm64 1:7.8.3+dfsg-2 [13.6 kB] 151s Get:218 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcamd3 arm64 1:7.8.3+dfsg-2 [22.6 kB] 151s Get:219 http://ftpmaster.internal/ubuntu plucky/universe arm64 libccolamd3 arm64 1:7.8.3+dfsg-2 [25.5 kB] 151s Get:220 http://ftpmaster.internal/ubuntu plucky/main arm64 libcolamd3 arm64 1:7.8.3+dfsg-2 [18.2 kB] 151s Get:221 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcholmod5 arm64 1:7.8.3+dfsg-2 [614 kB] 151s Get:222 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcombblas2.0.0t64 arm64 2.0.0-3.1build3 [267 kB] 151s Get:223 http://ftpmaster.internal/ubuntu plucky/main arm64 libidn2-dev arm64 2.3.7-2build2 [120 kB] 151s Get:224 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 151s Get:225 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 151s Get:226 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 151s Get:227 http://ftpmaster.internal/ubuntu plucky/main arm64 libnghttp2-dev arm64 1.64.0-1 [120 kB] 151s Get:228 http://ftpmaster.internal/ubuntu plucky/main arm64 libpsl-dev arm64 0.21.2-1.1build1 [77.2 kB] 151s Get:229 http://ftpmaster.internal/ubuntu plucky/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-2ubuntu7 [10.1 kB] 151s Get:230 http://ftpmaster.internal/ubuntu plucky/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-2ubuntu7 [335 kB] 151s Get:231 http://ftpmaster.internal/ubuntu plucky/main arm64 libunbound8 arm64 1.20.0-1ubuntu2.1 [431 kB] 151s Get:232 http://ftpmaster.internal/ubuntu plucky/main arm64 libgnutls-dane0t64 arm64 3.8.6-2ubuntu1 [24.0 kB] 151s Get:233 http://ftpmaster.internal/ubuntu plucky/main arm64 libgnutls-openssl27t64 arm64 3.8.6-2ubuntu1 [24.0 kB] 151s Get:234 http://ftpmaster.internal/ubuntu plucky/main arm64 libp11-kit-dev arm64 0.25.5-2ubuntu1 [22.7 kB] 151s Get:235 http://ftpmaster.internal/ubuntu plucky/main arm64 libtasn1-6-dev arm64 4.19.0-3build1 [90.6 kB] 151s Get:236 http://ftpmaster.internal/ubuntu plucky/main arm64 nettle-dev arm64 3.10-1 [1189 kB] 151s Get:237 http://ftpmaster.internal/ubuntu plucky/main arm64 libgnutls28-dev arm64 3.8.6-2ubuntu1 [1132 kB] 151s Get:238 http://ftpmaster.internal/ubuntu plucky/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2build7 [69.4 kB] 151s Get:239 http://ftpmaster.internal/ubuntu plucky/main arm64 libssl-dev arm64 3.3.1-2ubuntu2 [3176 kB] 152s Get:240 http://ftpmaster.internal/ubuntu plucky/main arm64 libssh2-1-dev arm64 1.11.1-1 [286 kB] 152s Get:241 http://ftpmaster.internal/ubuntu plucky/main arm64 libzstd-dev arm64 1.5.6+dfsg-1 [352 kB] 152s Get:242 http://ftpmaster.internal/ubuntu plucky/main arm64 libcurl4-openssl-dev arm64 8.9.1-2ubuntu2 [491 kB] 152s Get:243 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcxsparse4 arm64 1:7.8.3+dfsg-2 [68.8 kB] 152s Get:244 http://ftpmaster.internal/ubuntu plucky/universe arm64 libdolfin-dev-common all 2019.2.0~legacy20240219.1c52e83-10ubuntu1 [196 kB] 152s Get:245 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 152s Get:246 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-openmpi-103-1t64 arm64 1.10.10+repack-4ubuntu3 [1258 kB] 152s Get:247 http://ftpmaster.internal/ubuntu plucky/main arm64 libfftw3-double3 arm64 3.3.10-1ubuntu4 [392 kB] 152s Get:248 http://ftpmaster.internal/ubuntu plucky/main arm64 libfftw3-long3 arm64 3.3.10-1ubuntu4 [652 kB] 152s Get:249 http://ftpmaster.internal/ubuntu plucky/main arm64 libfftw3-single3 arm64 3.3.10-1ubuntu4 [604 kB] 152s Get:250 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfftw3-mpi3 arm64 3.3.10-1ubuntu4 [45.6 kB] 152s Get:251 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmetis5 arm64 5.1.0.dfsg-7build3 [176 kB] 152s Get:252 http://ftpmaster.internal/ubuntu plucky/universe arm64 libptscotch-7.0 arm64 7.0.5-1ubuntu1 [662 kB] 152s Get:253 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsuperlu-dist8 arm64 8.2.1+dfsg1-2 [576 kB] 152s Get:254 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhypre-2.31.0 arm64 2.31.0-1exp2 [1723 kB] 152s Get:255 http://ftpmaster.internal/ubuntu plucky/universe arm64 libklu2 arm64 1:7.8.3+dfsg-2 [77.0 kB] 152s Get:256 http://ftpmaster.internal/ubuntu plucky/universe arm64 mpi-default-bin arm64 1.17 [2296 B] 152s Get:257 http://ftpmaster.internal/ubuntu plucky/universe arm64 libscalapack-openmpi2.2 arm64 2.2.1-3.1ubuntu2 [1610 kB] 152s Get:258 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmumps-5.6t64 arm64 5.6.2-2.1build3 [1929 kB] 152s Get:259 http://ftpmaster.internal/ubuntu plucky/universe arm64 libspqr4 arm64 1:7.8.3+dfsg-2 [130 kB] 152s Get:260 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsuperlu6 arm64 6.0.1+dfsg1-1build3 [170 kB] 152s Get:261 http://ftpmaster.internal/ubuntu plucky/universe arm64 libscotch-7.0 arm64 7.0.5-1ubuntu1 [428 kB] 152s Get:262 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-kokkos-13.2 arm64 13.2.0-6 [103 kB] 152s Get:263 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-teuchos-13.2 arm64 13.2.0-6 [1071 kB] 152s Get:264 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-epetra-13.2 arm64 13.2.0-6 [414 kB] 152s Get:265 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-triutils-13.2 arm64 13.2.0-6 [117 kB] 152s Get:266 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-epetraext-13.2 arm64 13.2.0-6 [408 kB] 152s Get:267 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-trilinosss-13.2 arm64 13.2.0-6 [87.2 kB] 152s Get:268 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-amesos-13.2 arm64 13.2.0-6 [101 kB] 152s Get:269 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-aztecoo-13.2 arm64 13.2.0-6 [205 kB] 152s Get:270 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-galeri-13.2 arm64 13.2.0-6 [87.4 kB] 152s Get:271 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-ifpack-13.2 arm64 13.2.0-6 [396 kB] 152s Get:272 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-zoltan-13.2 arm64 13.2.0-6 [380 kB] 152s Get:273 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-ml-13.2 arm64 13.2.0-6 [926 kB] 152s Get:274 http://ftpmaster.internal/ubuntu plucky/universe arm64 libumfpack6 arm64 1:7.8.3+dfsg-2 [249 kB] 152s Get:275 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpetsc-real3.20 arm64 3.20.6+dfsg1-3ubuntu3 [5991 kB] 152s Get:276 http://ftpmaster.internal/ubuntu plucky/universe arm64 libparpack2t64 arm64 3.9.1-1.1ubuntu1 [84.9 kB] 152s Get:277 http://ftpmaster.internal/ubuntu plucky/universe arm64 libslepc-real3.20 arm64 3.20.2+dfsg1-2build1 [1014 kB] 152s Get:278 http://ftpmaster.internal/ubuntu plucky/universe arm64 libdolfin2019.2t64 arm64 2019.2.0~legacy20240219.1c52e83-10ubuntu1 [1977 kB] 153s Get:279 http://ftpmaster.internal/ubuntu plucky/universe arm64 libopenblas64-0-pthread arm64 0.3.28+ds-3 [5676 kB] 153s Get:280 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack64-3 arm64 3.12.0-3build2 [2188 kB] 153s Get:281 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhypre64m-2.31.0 arm64 2.31.0-1exp2 [1582 kB] 153s Get:282 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmumps-64pord-5.6t64 arm64 5.6.2-2.1build3 [1927 kB] 153s Get:283 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpetsc64-real3.20 arm64 3.20.6+dfsg1-3ubuntu3 [5886 kB] 154s Get:284 http://ftpmaster.internal/ubuntu plucky/universe arm64 libslepc64-real3.20 arm64 3.20.2+dfsg1-2build1 [1011 kB] 154s Get:285 http://ftpmaster.internal/ubuntu plucky/universe arm64 libdolfin64-2019.2t64 arm64 2019.2.0~legacy20240219.1c52e83-10ubuntu1 [1977 kB] 154s Get:286 http://ftpmaster.internal/ubuntu plucky/main arm64 pkg-config arm64 1.8.1-4 [7362 B] 154s Get:287 http://ftpmaster.internal/ubuntu plucky/universe arm64 libeigen3-dev all 3.4.0-4build1 [1055 kB] 154s Get:288 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-openmpi-fortran-102t64 arm64 1.10.10+repack-4ubuntu3 [87.9 kB] 154s Get:289 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-openmpi-hl-100t64 arm64 1.10.10+repack-4ubuntu3 [56.8 kB] 154s Get:290 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-openmpi-hl-fortran-100t64 arm64 1.10.10+repack-4ubuntu3 [31.0 kB] 154s Get:291 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-openmpi-cpp-103-1t64 arm64 1.10.10+repack-4ubuntu3 [118 kB] 154s Get:292 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-openmpi-hl-cpp-100t64 arm64 1.10.10+repack-4ubuntu3 [11.1 kB] 154s Get:293 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec-dev arm64 1.1.3-1 [19.3 kB] 154s Get:294 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu2 [305 kB] 154s Get:295 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 154s Get:296 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 154s Get:297 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-openmpi-dev arm64 1.10.10+repack-4ubuntu3 [3136 kB] 154s Get:298 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-mpi-dev arm64 1.10.10+repack-4ubuntu3 [4616 B] 154s Get:299 http://ftpmaster.internal/ubuntu plucky/universe arm64 libldl3 arm64 1:7.8.3+dfsg-2 [13.5 kB] 154s Get:300 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsuitesparse-mongoose3 arm64 1:7.8.3+dfsg-2 [32.8 kB] 154s Get:301 http://ftpmaster.internal/ubuntu plucky/universe arm64 librbio4 arm64 1:7.8.3+dfsg-2 [26.3 kB] 154s Get:302 http://ftpmaster.internal/ubuntu plucky/universe arm64 libspex3 arm64 1:7.8.3+dfsg-2 [45.4 kB] 154s Get:303 http://ftpmaster.internal/ubuntu plucky/universe arm64 libparu1 arm64 1:7.8.3+dfsg-2 [52.2 kB] 154s Get:304 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsuitesparse-dev arm64 1:7.8.3+dfsg-2 [1489 kB] 154s Get:305 http://ftpmaster.internal/ubuntu plucky/universe arm64 libscotch-dev arm64 7.0.5-1ubuntu1 [1587 kB] 155s Get:306 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.2-2 [179 kB] 155s Get:307 http://ftpmaster.internal/ubuntu plucky/main arm64 libxml2-dev arm64 2.12.7+dfsg-3 [73.0 kB] 155s Get:308 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB] 155s Get:309 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mpi4py arm64 3.1.6-9ubuntu1 [449 kB] 155s Get:310 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-dijitso all 2019.2.0~git20190418.c92dcb0-4 [24.3 kB] 155s Get:311 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mpmath all 1.3.0-1 [425 kB] 155s Get:312 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sympy all 1.13.3-1 [4228 kB] 156s Get:313 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fiat all 2019.2.0~git20210419.7d418fa-5 [69.2 kB] 156s Get:314 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ufl-legacy all 1:2022.3.0-3 [154 kB] 156s Get:315 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ffc all 2019.2.0~legacy20230509.35df986-3 [227 kB] 156s Get:316 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 156s Get:317 http://ftpmaster.internal/ubuntu plucky/universe arm64 libptscotch-dev arm64 7.0.5-1ubuntu1 [1352 kB] 156s Get:318 http://ftpmaster.internal/ubuntu plucky/universe arm64 libscalapack-openmpi-dev arm64 2.2.1-3.1ubuntu2 [7490 B] 156s Get:319 http://ftpmaster.internal/ubuntu plucky/universe arm64 libscalapack-mpi-dev arm64 2.2.1-3.1ubuntu2 [2324 B] 156s Get:320 http://ftpmaster.internal/ubuntu plucky/main arm64 libfftw3-bin arm64 3.3.10-1ubuntu4 [33.5 kB] 156s Get:321 http://ftpmaster.internal/ubuntu plucky/main arm64 libfftw3-dev arm64 3.3.10-1ubuntu4 [1521 kB] 156s Get:322 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfftw3-mpi-dev arm64 3.3.10-1ubuntu4 [52.8 kB] 156s Get:323 http://ftpmaster.internal/ubuntu plucky/universe arm64 opencl-c-headers all 3.0~2024.05.08-1 [47.6 kB] 156s Get:324 http://ftpmaster.internal/ubuntu plucky/universe arm64 opencl-clhpp-headers all 3.0~2024.05.08-1ubuntu1 [50.9 kB] 156s Get:325 http://ftpmaster.internal/ubuntu plucky/universe arm64 ocl-icd-opencl-dev arm64 2.3.2-1build1 [2446 B] 156s Get:326 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsuperlu7 arm64 7.0.0+dfsg1-2 [171 kB] 156s Get:327 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsuperlu-dev arm64 7.0.0+dfsg1-2 [20.8 kB] 156s Get:328 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsuperlu-dist-dev arm64 8.2.1+dfsg1-2 [962 kB] 156s Get:329 http://ftpmaster.internal/ubuntu plucky/main arm64 xorg-sgml-doctools all 1:1.11-1.1 [10.9 kB] 156s Get:330 http://ftpmaster.internal/ubuntu plucky/main arm64 x11proto-dev all 2024.1-1 [606 kB] 156s Get:331 http://ftpmaster.internal/ubuntu plucky/main arm64 libxau-dev arm64 1:1.0.11-1 [10.2 kB] 156s Get:332 http://ftpmaster.internal/ubuntu plucky/main arm64 libxdmcp-dev arm64 1:1.1.3-0ubuntu6 [26.3 kB] 156s Get:333 http://ftpmaster.internal/ubuntu plucky/main arm64 xtrans-dev all 1.4.0-1 [68.9 kB] 156s Get:334 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb1-dev arm64 1.17.0-2 [91.7 kB] 156s Get:335 http://ftpmaster.internal/ubuntu plucky/main arm64 libx11-dev arm64 2:1.8.10-2 [746 kB] 156s Get:336 http://ftpmaster.internal/ubuntu plucky/main arm64 libyaml-dev arm64 0.2.5-1build1 [63.4 kB] 156s Get:337 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpetsc3.20-dev-common all 3.20.6+dfsg1-3ubuntu3 [305 kB] 156s Get:338 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhypre-dev arm64 2.31.0-1exp2 [2104 kB] 157s Get:339 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmumps-headers-dev all 5.6.2-2.1build3 [21.2 kB] 157s Get:340 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmumps-dev arm64 5.6.2-2.1build3 [1974 kB] 157s Get:341 http://ftpmaster.internal/ubuntu plucky/universe arm64 trilinos-dev arm64 13.2.0-6 [12.9 kB] 157s Get:342 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-aztecoo-dev arm64 13.2.0-6 [50.2 kB] 157s Get:343 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-trilinosss-dev arm64 13.2.0-6 [32.3 kB] 157s Get:344 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-ml-dev arm64 13.2.0-6 [117 kB] 157s Get:345 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-zoltan-dev arm64 13.2.0-6 [32.3 kB] 157s Get:346 http://ftpmaster.internal/ubuntu plucky/main arm64 libc6-dbg arm64 2.40-1ubuntu3 [6417 kB] 157s Get:347 http://ftpmaster.internal/ubuntu plucky/main arm64 valgrind arm64 1:3.23.0-0ubuntu2 [9035 kB] 157s Get:348 http://ftpmaster.internal/ubuntu plucky/universe arm64 valgrind-mpi arm64 1:3.23.0-0ubuntu2 [44.6 kB] 157s Get:349 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpetsc-real3.20-dev arm64 3.20.6+dfsg1-3ubuntu3 [6698 kB] 157s Get:350 http://ftpmaster.internal/ubuntu plucky/universe arm64 libparpack2-dev arm64 3.9.1-1.1ubuntu1 [98.6 kB] 157s Get:351 http://ftpmaster.internal/ubuntu plucky/universe arm64 libslepc-real3.20-dev arm64 3.20.2+dfsg1-2build1 [5689 kB] 158s Get:352 http://ftpmaster.internal/ubuntu plucky/universe arm64 libdolfin-dev arm64 2019.2.0~legacy20240219.1c52e83-10ubuntu1 [14.8 kB] 158s Get:353 http://ftpmaster.internal/ubuntu plucky/universe arm64 libopenblas64-0 arm64 0.3.28+ds-3 [5042 B] 158s Get:354 http://ftpmaster.internal/ubuntu plucky/universe arm64 libopenblas64-pthread-dev arm64 0.3.28+ds-3 [4090 kB] 158s Get:355 http://ftpmaster.internal/ubuntu plucky/universe arm64 libopenblas64-dev arm64 0.3.28+ds-3 [5106 B] 158s Get:356 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhypre64m-dev arm64 2.31.0-1exp2 [1916 kB] 158s Get:357 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmumps64-dev arm64 5.6.2-2.1build3 [1973 kB] 158s Get:358 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpetsc64-real3.20-dev arm64 3.20.6+dfsg1-3ubuntu3 [6712 kB] 158s Get:359 http://ftpmaster.internal/ubuntu plucky/universe arm64 libslepc64-real3.20-dev arm64 3.20.2+dfsg1-2build1 [5713 kB] 158s Get:360 http://ftpmaster.internal/ubuntu plucky/universe arm64 libdolfin64-dev arm64 2019.2.0~legacy20240219.1c52e83-10ubuntu1 [6808 B] 158s Get:361 http://ftpmaster.internal/ubuntu plucky/main arm64 libexpat1-dev arm64 2.6.2-2 [128 kB] 158s Get:362 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 158s Get:363 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 158s Get:364 http://ftpmaster.internal/ubuntu plucky/main arm64 libjson-perl all 4.10000-1 [81.9 kB] 158s Get:365 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpetsc-real-dev all 3.20.6+dfsg1-3ubuntu3 [3936 B] 158s Get:366 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpetsc64-real-dev all 3.20.6+dfsg1-3ubuntu3 [3954 B] 158s Get:367 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.12-dev arm64 3.12.7-3 [5565 kB] 158s Get:368 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-dev arm64 3.12.7-1 [10.3 kB] 158s Get:369 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [2073 kB] 159s Get:370 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13 arm64 3.13.0-2 [2262 kB] 159s Get:371 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-dev arm64 3.13.0-2 [5386 kB] 159s Get:372 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-all-dev arm64 3.12.7-1 [916 B] 159s Get:373 http://ftpmaster.internal/ubuntu plucky/universe arm64 petsc64-dev all 3.20.6+dfsg1-3ubuntu3 [3970 B] 159s Get:374 http://ftpmaster.internal/ubuntu plucky/universe arm64 pybind11-dev all 2.13.6-1 [168 kB] 159s Get:375 http://ftpmaster.internal/ubuntu plucky/main arm64 sphinx-common all 7.4.7-4 [775 kB] 159s Get:376 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-petsc4py-doc all 3.20.5-4ubuntu1 [2005 kB] 159s Get:377 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.0-2 [719 kB] 159s Get:378 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all arm64 3.12.7-1 [890 B] 159s Get:379 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-dev arm64 3.12.7-3 [505 kB] 159s Get:380 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-dev arm64 3.12.7-1 [26.7 kB] 159s Get:381 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-dev arm64 3.13.0-2 [507 kB] 159s Get:382 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all-dev arm64 3.12.7-1 [914 B] 159s Get:383 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-defusedxml all 0.7.1-2 [42.0 kB] 159s Get:384 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-roman all 4.2-1 [10.0 kB] 159s Get:385 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-docutils all 0.21.2+dfsg-2 [409 kB] 159s Get:386 http://ftpmaster.internal/ubuntu plucky/universe arm64 swig arm64 4.2.1-1 [1146 kB] 159s Get:387 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-petsc4py-real3.20 arm64 3.20.5-4ubuntu1 [1233 kB] 159s Get:388 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-petsc4py-real all 3.20.5-4ubuntu1 [2656 B] 159s Get:389 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-slepc4py-real3.20 arm64 3.20.2-1ubuntu2 [325 kB] 159s Get:390 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-slepc4py-real all 3.20.2-1ubuntu2 [2578 B] 159s Get:391 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-dolfin-real arm64 2019.2.0~legacy20240219.1c52e83-10ubuntu1 [788 kB] 159s Get:392 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-petsc4py-64-real3.20 arm64 3.20.5-4ubuntu1 [1231 kB] 159s Get:393 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-petsc4py-64-real all 3.20.5-4ubuntu1 [2506 B] 159s Get:394 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-slepc4py-64-real3.20 arm64 3.20.2-1ubuntu2 [325 kB] 159s Get:395 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-slepc4py-64-real all 3.20.2-1ubuntu2 [2556 B] 159s Get:396 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pkgconfig all 1.5.5-2 [7888 B] 159s Get:397 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pybind11 all 2.13.6-1 [176 kB] 159s Get:398 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-dolfin64-real arm64 2019.2.0~legacy20240219.1c52e83-10ubuntu1 [805 kB] 159s Get:399 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-imagesize all 1.4.1-1 [6844 B] 159s Get:400 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.1-1 [41.4 kB] 159s Get:401 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-ply all 3.11-7 [45.4 kB] 159s Get:402 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pusimp all 0.1.1-1 [10.3 kB] 159s Get:403 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-six all 1.16.0-7 [13.1 kB] 159s Get:404 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 159s Get:405 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-alabaster all 0.7.16-0.1 [18.5 kB] 159s Get:406 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-sphinx all 7.4.7-4 [593 kB] 160s Get:407 http://ftpmaster.internal/ubuntu plucky/main arm64 sphinx-rtd-theme-common all 3.0.1+dfsg-1 [1012 kB] 160s Get:408 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sphinxcontrib.jquery all 4.1-5 [6678 B] 160s Get:409 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sphinx-rtd-theme all 3.0.1+dfsg-1 [23.5 kB] 160s Get:410 http://ftpmaster.internal/ubuntu plucky/universe arm64 slepc64-dev arm64 3.20.2+dfsg1-2build1 [2242 B] 160s Get:411 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-petsc4py all 3.20.5-4ubuntu1 [2314 B] 160s Get:412 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-slepc4py all 3.20.2-1ubuntu2 [2252 B] 160s Get:413 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-dolfin arm64 2019.2.0~legacy20240219.1c52e83-10ubuntu1 [26.9 kB] 160s Get:414 http://ftpmaster.internal/ubuntu plucky/universe arm64 dolfin-doc all 2019.2.0~legacy20240219.1c52e83-10ubuntu1 [13.0 MB] 160s Get:415 http://ftpmaster.internal/ubuntu plucky/universe arm64 dolfin-bin all 2019.2.0~legacy20240219.1c52e83-10ubuntu1 [21.5 kB] 160s Get:416 http://ftpmaster.internal/ubuntu plucky/universe arm64 petsc-dev all 3.20.6+dfsg1-3ubuntu3 [7492 B] 160s Get:417 http://ftpmaster.internal/ubuntu plucky/universe arm64 slepc-dev arm64 3.20.2+dfsg1-2build1 [4836 B] 160s Get:418 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-modernizr all 3.13.0-0.1 [101 kB] 161s Fetched 438 MB in 23s (19.4 MB/s) 161s Selecting previously unselected package fonts-lato. 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79931 files and directories currently installed.) 162s Preparing to unpack .../000-fonts-lato_2.015-1_all.deb ... 162s Unpacking fonts-lato (2.015-1) ... 162s Selecting previously unselected package libpython3.13-minimal:arm64. 162s Preparing to unpack .../001-libpython3.13-minimal_3.13.0-2_arm64.deb ... 162s Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ... 162s Selecting previously unselected package python3.13-minimal. 162s Preparing to unpack .../002-python3.13-minimal_3.13.0-2_arm64.deb ... 162s Unpacking python3.13-minimal (3.13.0-2) ... 162s Selecting previously unselected package sgml-base. 162s Preparing to unpack .../003-sgml-base_1.31_all.deb ... 162s Unpacking sgml-base (1.31) ... 162s Selecting previously unselected package m4. 162s Preparing to unpack .../004-m4_1.4.19-4build1_arm64.deb ... 162s Unpacking m4 (1.4.19-4build1) ... 162s Selecting previously unselected package autoconf. 162s Preparing to unpack .../005-autoconf_2.72-3_all.deb ... 162s Unpacking autoconf (2.72-3) ... 162s Selecting previously unselected package autotools-dev. 162s Preparing to unpack .../006-autotools-dev_20220109.1_all.deb ... 162s Unpacking autotools-dev (20220109.1) ... 162s Selecting previously unselected package automake. 162s Preparing to unpack .../007-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 162s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 162s Selecting previously unselected package autopoint. 162s Preparing to unpack .../008-autopoint_0.22.5-2_all.deb ... 162s Unpacking autopoint (0.22.5-2) ... 162s Selecting previously unselected package libisl23:arm64. 162s Preparing to unpack .../009-libisl23_0.27-1_arm64.deb ... 162s Unpacking libisl23:arm64 (0.27-1) ... 162s Selecting previously unselected package libmpc3:arm64. 162s Preparing to unpack .../010-libmpc3_1.3.1-1build2_arm64.deb ... 162s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 162s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 163s Preparing to unpack .../011-cpp-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ... 163s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 163s Selecting previously unselected package cpp-14. 163s Preparing to unpack .../012-cpp-14_14.2.0-8ubuntu1_arm64.deb ... 163s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 163s Selecting previously unselected package cpp-aarch64-linux-gnu. 163s Preparing to unpack .../013-cpp-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 163s Unpacking cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 163s Selecting previously unselected package cpp. 163s Preparing to unpack .../014-cpp_4%3a14.1.0-2ubuntu1_arm64.deb ... 163s Unpacking cpp (4:14.1.0-2ubuntu1) ... 163s Selecting previously unselected package libcc1-0:arm64. 163s Preparing to unpack .../015-libcc1-0_14.2.0-8ubuntu1_arm64.deb ... 163s Unpacking libcc1-0:arm64 (14.2.0-8ubuntu1) ... 163s Selecting previously unselected package libgomp1:arm64. 163s Preparing to unpack .../016-libgomp1_14.2.0-8ubuntu1_arm64.deb ... 163s Unpacking libgomp1:arm64 (14.2.0-8ubuntu1) ... 163s Selecting previously unselected package libitm1:arm64. 163s Preparing to unpack .../017-libitm1_14.2.0-8ubuntu1_arm64.deb ... 163s Unpacking libitm1:arm64 (14.2.0-8ubuntu1) ... 163s Selecting previously unselected package libasan8:arm64. 163s Preparing to unpack .../018-libasan8_14.2.0-8ubuntu1_arm64.deb ... 163s Unpacking libasan8:arm64 (14.2.0-8ubuntu1) ... 163s Selecting previously unselected package liblsan0:arm64. 163s Preparing to unpack .../019-liblsan0_14.2.0-8ubuntu1_arm64.deb ... 163s Unpacking liblsan0:arm64 (14.2.0-8ubuntu1) ... 163s Selecting previously unselected package libtsan2:arm64. 163s Preparing to unpack .../020-libtsan2_14.2.0-8ubuntu1_arm64.deb ... 163s Unpacking libtsan2:arm64 (14.2.0-8ubuntu1) ... 163s Selecting previously unselected package libubsan1:arm64. 163s Preparing to unpack .../021-libubsan1_14.2.0-8ubuntu1_arm64.deb ... 163s Unpacking libubsan1:arm64 (14.2.0-8ubuntu1) ... 163s Selecting previously unselected package libhwasan0:arm64. 163s Preparing to unpack .../022-libhwasan0_14.2.0-8ubuntu1_arm64.deb ... 163s Unpacking libhwasan0:arm64 (14.2.0-8ubuntu1) ... 164s Selecting previously unselected package libgcc-14-dev:arm64. 164s Preparing to unpack .../023-libgcc-14-dev_14.2.0-8ubuntu1_arm64.deb ... 164s Unpacking libgcc-14-dev:arm64 (14.2.0-8ubuntu1) ... 164s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 164s Preparing to unpack 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.../029-g++-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ... 165s Unpacking g++-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 165s Selecting previously unselected package g++-14. 165s Preparing to unpack .../030-g++-14_14.2.0-8ubuntu1_arm64.deb ... 165s Unpacking g++-14 (14.2.0-8ubuntu1) ... 165s Selecting previously unselected package g++-aarch64-linux-gnu. 165s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 165s Unpacking g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 165s Selecting previously unselected package g++. 165s Preparing to unpack .../032-g++_4%3a14.1.0-2ubuntu1_arm64.deb ... 165s Unpacking g++ (4:14.1.0-2ubuntu1) ... 165s Selecting previously unselected package build-essential. 165s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 165s Unpacking build-essential (12.10ubuntu1) ... 165s Selecting previously unselected package chrpath. 165s Preparing to unpack .../034-chrpath_0.18-1_arm64.deb ... 165s Unpacking chrpath 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.../040-cpp-13-aarch64-linux-gnu_13.3.0-6ubuntu2_arm64.deb ... 166s Unpacking cpp-13-aarch64-linux-gnu (13.3.0-6ubuntu2) ... 166s Selecting previously unselected package cpp-13. 166s Preparing to unpack .../041-cpp-13_13.3.0-6ubuntu2_arm64.deb ... 166s Unpacking cpp-13 (13.3.0-6ubuntu2) ... 166s Selecting previously unselected package libdebhelper-perl. 167s Preparing to unpack .../042-libdebhelper-perl_13.20ubuntu1_all.deb ... 167s Unpacking libdebhelper-perl (13.20ubuntu1) ... 167s Selecting previously unselected package libgcc-13-dev:arm64. 167s Preparing to unpack .../043-libgcc-13-dev_13.3.0-6ubuntu2_arm64.deb ... 167s Unpacking libgcc-13-dev:arm64 (13.3.0-6ubuntu2) ... 167s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 167s Preparing to unpack .../044-gcc-13-aarch64-linux-gnu_13.3.0-6ubuntu2_arm64.deb ... 167s Unpacking gcc-13-aarch64-linux-gnu (13.3.0-6ubuntu2) ... 167s Selecting previously unselected package gcc-13. 167s Preparing to unpack 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dh-strip-nondeterminism (1.14.0-1) ... 167s Selecting previously unselected package debugedit. 168s Preparing to unpack .../051-debugedit_1%3a5.1-1_arm64.deb ... 168s Unpacking debugedit (1:5.1-1) ... 168s Selecting previously unselected package dwz. 168s Preparing to unpack .../052-dwz_0.15-1build6_arm64.deb ... 168s Unpacking dwz (0.15-1build6) ... 168s Selecting previously unselected package gettext. 168s Preparing to unpack .../053-gettext_0.22.5-2_arm64.deb ... 168s Unpacking gettext (0.22.5-2) ... 168s Selecting previously unselected package intltool-debian. 168s Preparing to unpack .../054-intltool-debian_0.35.0+20060710.6_all.deb ... 168s Unpacking intltool-debian (0.35.0+20060710.6) ... 168s Selecting previously unselected package po-debconf. 168s Preparing to unpack .../055-po-debconf_1.0.21+nmu1_all.deb ... 168s Unpacking po-debconf (1.0.21+nmu1) ... 168s Selecting previously unselected package debhelper. 168s Preparing to unpack .../056-debhelper_13.20ubuntu1_all.deb ... 168s Unpacking debhelper (13.20ubuntu1) ... 168s Selecting previously unselected package dh-python. 168s Preparing to unpack .../057-dh-python_6.20241024_all.deb ... 168s Unpacking dh-python (6.20241024) ... 168s Selecting previously unselected package xml-core. 168s Preparing to unpack .../058-xml-core_0.19_all.deb ... 168s Unpacking xml-core (0.19) ... 168s Selecting previously unselected package docutils-common. 168s Preparing to unpack .../059-docutils-common_0.21.2+dfsg-2_all.deb ... 168s Unpacking docutils-common (0.21.2+dfsg-2) ... 168s Selecting previously unselected package libfmt10:arm64. 168s Preparing to unpack .../060-libfmt10_10.1.1+ds1-4_arm64.deb ... 168s Unpacking libfmt10:arm64 (10.1.1+ds1-4) ... 168s Selecting previously unselected package libxapian30:arm64. 168s Preparing to unpack .../061-libxapian30_1.4.25-1_arm64.deb ... 168s Unpacking libxapian30:arm64 (1.4.25-1) ... 168s Selecting previously unselected package doxygen. 169s Preparing to unpack .../062-doxygen_1.9.8+ds-2ubuntu2_arm64.deb ... 169s Unpacking doxygen (1.9.8+ds-2ubuntu2) ... 169s Selecting previously unselected package fonts-dejavu-mono. 169s Preparing to unpack .../063-fonts-dejavu-mono_2.37-8_all.deb ... 169s Unpacking fonts-dejavu-mono (2.37-8) ... 169s Selecting previously unselected package fonts-dejavu-core. 169s Preparing to unpack .../064-fonts-dejavu-core_2.37-8_all.deb ... 169s Unpacking fonts-dejavu-core (2.37-8) ... 169s Selecting previously unselected package fontconfig-config. 169s Preparing to unpack .../065-fontconfig-config_2.15.0-1.1ubuntu2_arm64.deb ... 169s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 169s Selecting previously unselected package libfontconfig1:arm64. 169s Preparing to unpack .../066-libfontconfig1_2.15.0-1.1ubuntu2_arm64.deb ... 169s Unpacking libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... 169s Selecting previously unselected package fontconfig. 169s Preparing to unpack .../067-fontconfig_2.15.0-1.1ubuntu2_arm64.deb ... 169s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 169s Selecting previously unselected package fonts-font-awesome. 170s Preparing to unpack .../068-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 170s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 170s Selecting previously unselected package fonts-mathjax. 170s Preparing to unpack .../069-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 170s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 170s Selecting previously unselected package libgfortran5:arm64. 170s Preparing to unpack .../070-libgfortran5_14.2.0-8ubuntu1_arm64.deb ... 170s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ... 170s Selecting previously unselected package libgfortran-14-dev:arm64. 170s Preparing to unpack .../071-libgfortran-14-dev_14.2.0-8ubuntu1_arm64.deb ... 170s Unpacking libgfortran-14-dev:arm64 (14.2.0-8ubuntu1) ... 170s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 170s Preparing to unpack .../072-gfortran-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ... 170s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 170s Selecting previously unselected package gfortran-14. 170s Preparing to unpack .../073-gfortran-14_14.2.0-8ubuntu1_arm64.deb ... 170s Unpacking gfortran-14 (14.2.0-8ubuntu1) ... 170s Selecting previously unselected package gfortran-aarch64-linux-gnu. 170s Preparing to unpack .../074-gfortran-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 170s Unpacking gfortran-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 170s Selecting previously unselected package gfortran. 170s Preparing to unpack .../075-gfortran_4%3a14.1.0-2ubuntu1_arm64.deb ... 170s Unpacking gfortran (4:14.1.0-2ubuntu1) ... 170s Selecting previously unselected package libgfortran-13-dev:arm64. 171s Preparing to unpack .../076-libgfortran-13-dev_13.3.0-6ubuntu2_arm64.deb ... 171s Unpacking libgfortran-13-dev:arm64 (13.3.0-6ubuntu2) ... 171s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 171s Preparing to unpack .../077-gfortran-13-aarch64-linux-gnu_13.3.0-6ubuntu2_arm64.deb ... 171s Unpacking gfortran-13-aarch64-linux-gnu (13.3.0-6ubuntu2) ... 171s Selecting previously unselected package gfortran-13. 171s Preparing to unpack .../078-gfortran-13_13.3.0-6ubuntu2_arm64.deb ... 171s Unpacking gfortran-13 (13.3.0-6ubuntu2) ... 171s Selecting previously unselected package libann0. 171s Preparing to unpack .../079-libann0_1.1.2+doc-9build1_arm64.deb ... 171s Unpacking libann0 (1.1.2+doc-9build1) ... 171s Selecting previously unselected package libcdt5:arm64. 171s Preparing to unpack .../080-libcdt5_2.42.4-2build3_arm64.deb ... 171s Unpacking libcdt5:arm64 (2.42.4-2build3) ... 171s Selecting previously unselected package libcgraph6:arm64. 171s Preparing to unpack .../081-libcgraph6_2.42.4-2build3_arm64.deb ... 171s Unpacking libcgraph6:arm64 (2.42.4-2build3) ... 171s Selecting previously unselected package libsharpyuv0:arm64. 171s Preparing to unpack .../082-libsharpyuv0_1.4.0-0.1_arm64.deb ... 171s Unpacking libsharpyuv0:arm64 (1.4.0-0.1) ... 171s Selecting previously unselected package libaom3:arm64. 171s Preparing to unpack .../083-libaom3_3.11.0~rc1-1_arm64.deb ... 171s Unpacking libaom3:arm64 (3.11.0~rc1-1) ... 171s Selecting previously unselected package libheif-plugin-aomdec:arm64. 171s Preparing to unpack .../084-libheif-plugin-aomdec_1.18.1-2_arm64.deb ... 171s Unpacking libheif-plugin-aomdec:arm64 (1.18.1-2) ... 171s Selecting previously unselected package libde265-0:arm64. 171s Preparing to unpack .../085-libde265-0_1.0.15-1build4_arm64.deb ... 171s Unpacking libde265-0:arm64 (1.0.15-1build4) ... 171s Selecting previously unselected package libheif-plugin-libde265:arm64. 171s Preparing to unpack .../086-libheif-plugin-libde265_1.18.1-2_arm64.deb ... 171s Unpacking libheif-plugin-libde265:arm64 (1.18.1-2) ... 171s Selecting previously unselected package libheif1:arm64. 171s Preparing to unpack .../087-libheif1_1.18.1-2_arm64.deb ... 171s Unpacking libheif1:arm64 (1.18.1-2) ... 172s Selecting previously unselected package libimagequant0:arm64. 172s Preparing to unpack .../088-libimagequant0_2.18.0-1build1_arm64.deb ... 172s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 172s Selecting previously unselected package libjpeg-turbo8:arm64. 172s Preparing to unpack .../089-libjpeg-turbo8_2.1.5-2ubuntu2_arm64.deb ... 172s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ... 172s Selecting previously unselected package libjpeg8:arm64. 172s Preparing to unpack .../090-libjpeg8_8c-2ubuntu11_arm64.deb ... 172s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 172s Selecting previously unselected package libgraphite2-3:arm64. 172s Preparing to unpack .../091-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 172s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 172s Selecting previously unselected package libharfbuzz0b:arm64. 172s Preparing to unpack .../092-libharfbuzz0b_10.0.1-1_arm64.deb ... 172s Unpacking libharfbuzz0b:arm64 (10.0.1-1) ... 172s Selecting previously unselected package libraqm0:arm64. 172s Preparing to unpack .../093-libraqm0_0.10.1-1build1_arm64.deb ... 172s Unpacking libraqm0:arm64 (0.10.1-1build1) ... 172s Selecting previously unselected package libdeflate0:arm64. 172s Preparing to unpack .../094-libdeflate0_1.22-1_arm64.deb ... 172s Unpacking libdeflate0:arm64 (1.22-1) ... 172s Selecting previously unselected package libjbig0:arm64. 172s Preparing to unpack .../095-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 172s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 172s Selecting previously unselected package liblerc4:arm64. 172s Preparing to unpack .../096-liblerc4_4.0.0+ds-4ubuntu2_arm64.deb ... 172s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu2) ... 172s Selecting previously unselected package libwebp7:arm64. 172s Preparing to unpack .../097-libwebp7_1.4.0-0.1_arm64.deb ... 172s Unpacking libwebp7:arm64 (1.4.0-0.1) ... 172s Selecting previously unselected package libtiff6:arm64. 172s Preparing to unpack .../098-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 172s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 172s Selecting previously unselected package libxpm4:arm64. 172s Preparing to unpack .../099-libxpm4_1%3a3.5.17-1build2_arm64.deb ... 172s Unpacking libxpm4:arm64 (1:3.5.17-1build2) ... 172s Selecting previously unselected package libgd3:arm64. 172s Preparing to unpack .../100-libgd3_2.3.3-12ubuntu3_arm64.deb ... 172s Unpacking libgd3:arm64 (2.3.3-12ubuntu3) ... 172s Selecting previously unselected package libgts-0.7-5t64:arm64. 172s Preparing to unpack .../101-libgts-0.7-5t64_0.7.6+darcs121130-5.2build1_arm64.deb ... 172s Unpacking libgts-0.7-5t64:arm64 (0.7.6+darcs121130-5.2build1) ... 172s Selecting previously unselected package libpixman-1-0:arm64. 172s Preparing to unpack .../102-libpixman-1-0_0.44.0-3_arm64.deb ... 172s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 172s Selecting previously unselected package libxcb-render0:arm64. 172s Preparing to unpack .../103-libxcb-render0_1.17.0-2_arm64.deb ... 172s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 173s Selecting previously unselected package libxcb-shm0:arm64. 173s Preparing to unpack .../104-libxcb-shm0_1.17.0-2_arm64.deb ... 173s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 173s Selecting previously unselected package libxrender1:arm64. 173s Preparing to unpack .../105-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 173s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 173s Selecting previously unselected package libcairo2:arm64. 173s Preparing to unpack .../106-libcairo2_1.18.2-2_arm64.deb ... 173s Unpacking libcairo2:arm64 (1.18.2-2) ... 173s Selecting previously unselected package libltdl7:arm64. 173s Preparing to unpack .../107-libltdl7_2.4.7-7build1_arm64.deb ... 173s Unpacking libltdl7:arm64 (2.4.7-7build1) ... 173s Selecting previously unselected package libthai-data. 173s Preparing to unpack .../108-libthai-data_0.1.29-2build1_all.deb ... 173s Unpacking libthai-data (0.1.29-2build1) ... 173s Selecting previously unselected package libdatrie1:arm64. 173s Preparing to unpack .../109-libdatrie1_0.2.13-3build1_arm64.deb ... 173s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 173s Selecting previously unselected package libthai0:arm64. 173s Preparing to unpack .../110-libthai0_0.1.29-2build1_arm64.deb ... 173s Unpacking libthai0:arm64 (0.1.29-2build1) ... 173s Selecting previously unselected package libpango-1.0-0:arm64. 173s Preparing to unpack .../111-libpango-1.0-0_1.54.0+ds-3_arm64.deb ... 173s Unpacking libpango-1.0-0:arm64 (1.54.0+ds-3) ... 173s Selecting previously unselected package libpangoft2-1.0-0:arm64. 173s Preparing to unpack .../112-libpangoft2-1.0-0_1.54.0+ds-3_arm64.deb ... 173s Unpacking libpangoft2-1.0-0:arm64 (1.54.0+ds-3) ... 173s Selecting previously unselected package libpangocairo-1.0-0:arm64. 173s Preparing to unpack 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Unpacking x11-common (1:7.7+23ubuntu3) ... 174s Selecting previously unselected package libice6:arm64. 174s Preparing to unpack .../119-libice6_2%3a1.1.1-1_arm64.deb ... 174s Unpacking libice6:arm64 (2:1.1.1-1) ... 174s Selecting previously unselected package libsm6:arm64. 174s Preparing to unpack .../120-libsm6_2%3a1.2.4-1_arm64.deb ... 174s Unpacking libsm6:arm64 (2:1.2.4-1) ... 174s Selecting previously unselected package libxt6t64:arm64. 174s Preparing to unpack .../121-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 174s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 174s Selecting previously unselected package libxmu6:arm64. 174s Preparing to unpack .../122-libxmu6_2%3a1.1.3-3build2_arm64.deb ... 174s Unpacking libxmu6:arm64 (2:1.1.3-3build2) ... 174s Selecting previously unselected package libxaw7:arm64. 174s Preparing to unpack .../123-libxaw7_2%3a1.0.16-1_arm64.deb ... 174s Unpacking libxaw7:arm64 (2:1.0.16-1) ... 174s Selecting previously unselected package graphviz. 174s Preparing to unpack .../124-graphviz_2.42.4-2build3_arm64.deb ... 174s Unpacking graphviz (2.42.4-2build3) ... 174s Selecting previously unselected package icu-devtools. 174s Preparing to unpack .../125-icu-devtools_74.2-1ubuntu4_arm64.deb ... 174s Unpacking icu-devtools (74.2-1ubuntu4) ... 174s Selecting previously unselected package libaec0:arm64. 174s Preparing to unpack .../126-libaec0_1.1.3-1_arm64.deb ... 174s Unpacking libaec0:arm64 (1.1.3-1) ... 174s Selecting previously unselected package libllvm17t64:arm64. 174s Preparing to unpack .../127-libllvm17t64_1%3a17.0.6-18_arm64.deb ... 174s Unpacking libllvm17t64:arm64 (1:17.0.6-18) ... 175s Selecting previously unselected package libamd-comgr2:arm64. 175s Preparing to unpack .../128-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_arm64.deb ... 175s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 176s Selecting previously unselected package libsuitesparseconfig7:arm64. 176s Preparing to unpack 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.../134-libamdhip64-5_5.7.1-5_arm64.deb ... 176s Unpacking libamdhip64-5 (5.7.1-5) ... 176s Selecting previously unselected package libblas3:arm64. 176s Preparing to unpack .../135-libblas3_3.12.0-3build2_arm64.deb ... 176s Unpacking libblas3:arm64 (3.12.0-3build2) ... 176s Selecting previously unselected package libblis4-pthread:arm64. 176s Preparing to unpack .../136-libblis4-pthread_0.9.0-1_arm64.deb ... 176s Unpacking libblis4-pthread:arm64 (0.9.0-1) ... 176s Selecting previously unselected package liblapack3:arm64. 176s Preparing to unpack .../137-liblapack3_3.12.0-3build2_arm64.deb ... 176s Unpacking liblapack3:arm64 (3.12.0-3build2) ... 176s Selecting previously unselected package libarpack2t64:arm64. 176s Preparing to unpack .../138-libarpack2t64_3.9.1-1.1ubuntu1_arm64.deb ... 176s Unpacking libarpack2t64:arm64 (3.9.1-1.1ubuntu1) ... 176s Selecting previously unselected package libblas-dev:arm64. 177s Preparing to unpack .../139-libblas-dev_3.12.0-3build2_arm64.deb ... 177s Unpacking libblas-dev:arm64 (3.12.0-3build2) ... 177s Selecting previously unselected package libblis-pthread-dev:arm64. 177s Preparing to unpack .../140-libblis-pthread-dev_0.9.0-1_arm64.deb ... 177s Unpacking libblis-pthread-dev:arm64 (0.9.0-1) ... 177s Selecting previously unselected package liblapack-dev:arm64. 177s Preparing to unpack .../141-liblapack-dev_3.12.0-3build2_arm64.deb ... 177s Unpacking liblapack-dev:arm64 (3.12.0-3build2) ... 177s Selecting previously unselected package libarpack2-dev:arm64. 177s Preparing to unpack .../142-libarpack2-dev_3.9.1-1.1ubuntu1_arm64.deb ... 177s Unpacking libarpack2-dev:arm64 (3.9.1-1.1ubuntu1) ... 177s Selecting previously unselected package libblas64-3:arm64. 177s Preparing to unpack .../143-libblas64-3_3.12.0-3build2_arm64.deb ... 177s Unpacking libblas64-3:arm64 (3.12.0-3build2) ... 177s Selecting previously unselected package libboost1.83-dev:arm64. 177s Preparing to unpack .../144-libboost1.83-dev_1.83.0-3.2ubuntu2_arm64.deb ... 177s Unpacking libboost1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 180s Selecting previously unselected package libboost-atomic1.83.0:arm64. 180s Preparing to unpack .../145-libboost-atomic1.83.0_1.83.0-3.2ubuntu2_arm64.deb ... 180s Unpacking libboost-atomic1.83.0:arm64 (1.83.0-3.2ubuntu2) ... 180s Selecting previously unselected package libboost-atomic1.83-dev:arm64. 180s Preparing to unpack .../146-libboost-atomic1.83-dev_1.83.0-3.2ubuntu2_arm64.deb ... 180s Unpacking libboost-atomic1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 180s Selecting previously unselected package libboost-chrono1.83.0t64:arm64. 180s Preparing to unpack .../147-libboost-chrono1.83.0t64_1.83.0-3.2ubuntu2_arm64.deb ... 180s Unpacking libboost-chrono1.83.0t64:arm64 (1.83.0-3.2ubuntu2) ... 180s Selecting previously unselected package libboost-chrono1.83-dev:arm64. 180s Preparing to unpack .../148-libboost-chrono1.83-dev_1.83.0-3.2ubuntu2_arm64.deb ... 180s Unpacking libboost-chrono1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 180s Selecting previously unselected package libboost-chrono-dev:arm64. 180s Preparing to unpack .../149-libboost-chrono-dev_1.83.0.2ubuntu1_arm64.deb ... 180s Unpacking libboost-chrono-dev:arm64 (1.83.0.2ubuntu1) ... 180s Selecting previously unselected package libboost-date-time1.83.0:arm64. 180s Preparing to unpack .../150-libboost-date-time1.83.0_1.83.0-3.2ubuntu2_arm64.deb ... 180s Unpacking libboost-date-time1.83.0:arm64 (1.83.0-3.2ubuntu2) ... 180s Selecting previously unselected package libboost-serialization1.83.0:arm64. 180s Preparing to unpack .../151-libboost-serialization1.83.0_1.83.0-3.2ubuntu2_arm64.deb ... 180s Unpacking libboost-serialization1.83.0:arm64 (1.83.0-3.2ubuntu2) ... 180s Selecting previously unselected package libboost-serialization1.83-dev:arm64. 180s Preparing to unpack .../152-libboost-serialization1.83-dev_1.83.0-3.2ubuntu2_arm64.deb ... 180s Unpacking libboost-serialization1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 180s Selecting previously unselected package libboost-date-time1.83-dev:arm64. 181s Preparing to unpack .../153-libboost-date-time1.83-dev_1.83.0-3.2ubuntu2_arm64.deb ... 181s Unpacking libboost-date-time1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 181s Selecting previously unselected package libboost-dev:arm64. 181s Preparing to unpack .../154-libboost-dev_1.83.0.2ubuntu1_arm64.deb ... 181s Unpacking libboost-dev:arm64 (1.83.0.2ubuntu1) ... 181s Selecting previously unselected package libboost-filesystem1.83.0:arm64. 181s Preparing to unpack .../155-libboost-filesystem1.83.0_1.83.0-3.2ubuntu2_arm64.deb ... 181s Unpacking libboost-filesystem1.83.0:arm64 (1.83.0-3.2ubuntu2) ... 181s Selecting previously unselected package libboost-system1.83.0:arm64. 181s Preparing to unpack .../156-libboost-system1.83.0_1.83.0-3.2ubuntu2_arm64.deb ... 181s Unpacking libboost-system1.83.0:arm64 (1.83.0-3.2ubuntu2) ... 181s Selecting previously unselected package libboost-system1.83-dev:arm64. 181s Preparing to unpack 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package libboost-math1.83.0:arm64. 182s Preparing to unpack .../166-libboost-math1.83.0_1.83.0-3.2ubuntu2_arm64.deb ... 182s Unpacking libboost-math1.83.0:arm64 (1.83.0-3.2ubuntu2) ... 182s Selecting previously unselected package libboost-math1.83-dev:arm64. 182s Preparing to unpack .../167-libboost-math1.83-dev_1.83.0-3.2ubuntu2_arm64.deb ... 182s Unpacking libboost-math1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 182s Selecting previously unselected package libboost-math-dev:arm64. 182s Preparing to unpack .../168-libboost-math-dev_1.83.0.2ubuntu1_arm64.deb ... 182s Unpacking libboost-math-dev:arm64 (1.83.0.2ubuntu1) ... 182s Selecting previously unselected package libevent-pthreads-2.1-7t64:arm64. 182s Preparing to unpack .../169-libevent-pthreads-2.1-7t64_2.1.12-stable-10_arm64.deb ... 182s Unpacking libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 182s Selecting previously unselected package librdmacm1t64:arm64. 182s Preparing to unpack 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Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 183s Selecting previously unselected package ocl-icd-libopencl1:arm64. 183s Preparing to unpack .../176-ocl-icd-libopencl1_2.3.2-1build1_arm64.deb ... 183s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 183s Selecting previously unselected package libhwloc-plugins:arm64. 183s Preparing to unpack .../177-libhwloc-plugins_2.11.2-1_arm64.deb ... 183s Unpacking libhwloc-plugins:arm64 (2.11.2-1) ... 183s Selecting previously unselected package libpmix2t64:arm64. 183s Preparing to unpack .../178-libpmix2t64_5.0.3-2_arm64.deb ... 183s Unpacking libpmix2t64:arm64 (5.0.3-2) ... 183s Selecting previously unselected package libibumad3:arm64. 183s Preparing to unpack .../179-libibumad3_52.0-2ubuntu1_arm64.deb ... 183s Unpacking libibumad3:arm64 (52.0-2ubuntu1) ... 183s Selecting previously unselected package libibmad5:arm64. 183s Preparing to unpack .../180-libibmad5_52.0-2ubuntu1_arm64.deb ... 183s Unpacking libibmad5:arm64 (52.0-2ubuntu1) ... 183s Selecting previously unselected package libucx0:arm64. 183s Preparing to unpack .../181-libucx0_1.17.0+ds-3build1_arm64.deb ... 183s Unpacking libucx0:arm64 (1.17.0+ds-3build1) ... 183s Selecting previously unselected package libopenmpi3t64:arm64. 183s Preparing to unpack .../182-libopenmpi3t64_4.1.6-13.3ubuntu2_arm64.deb ... 183s Unpacking libopenmpi3t64:arm64 (4.1.6-13.3ubuntu2) ... 184s Selecting previously unselected package libboost-mpi1.83.0. 184s Preparing to unpack .../183-libboost-mpi1.83.0_1.83.0-3.2ubuntu2_arm64.deb ... 184s Unpacking libboost-mpi1.83.0 (1.83.0-3.2ubuntu2) ... 184s Selecting previously unselected package openmpi-common. 184s Preparing to unpack .../184-openmpi-common_4.1.6-13.3ubuntu2_all.deb ... 184s Unpacking openmpi-common (4.1.6-13.3ubuntu2) ... 184s Selecting previously unselected package libnl-3-dev:arm64. 184s Preparing to unpack .../185-libnl-3-dev_3.7.0-0.3build2_arm64.deb ... 184s Unpacking libnl-3-dev:arm64 (3.7.0-0.3build2) ... 184s Selecting previously unselected package libnl-route-3-dev:arm64. 184s Preparing to unpack .../186-libnl-route-3-dev_3.7.0-0.3build2_arm64.deb ... 184s Unpacking libnl-route-3-dev:arm64 (3.7.0-0.3build2) ... 184s Selecting previously unselected package libibverbs-dev:arm64. 184s Preparing to unpack .../187-libibverbs-dev_52.0-2ubuntu1_arm64.deb ... 184s Unpacking libibverbs-dev:arm64 (52.0-2ubuntu1) ... 184s Selecting previously unselected package libnuma-dev:arm64. 184s Preparing to unpack .../188-libnuma-dev_2.0.18-1build1_arm64.deb ... 184s Unpacking libnuma-dev:arm64 (2.0.18-1build1) ... 184s Selecting previously unselected package libltdl-dev:arm64. 184s Preparing to unpack .../189-libltdl-dev_2.4.7-7build1_arm64.deb ... 184s Unpacking libltdl-dev:arm64 (2.4.7-7build1) ... 184s Selecting previously unselected package libhwloc-dev:arm64. 184s Preparing to unpack .../190-libhwloc-dev_2.11.2-1_arm64.deb ... 184s Unpacking libhwloc-dev:arm64 (2.11.2-1) ... 184s Selecting previously unselected package libevent-2.1-7t64:arm64. 184s Preparing to unpack .../191-libevent-2.1-7t64_2.1.12-stable-10_arm64.deb ... 184s Unpacking libevent-2.1-7t64:arm64 (2.1.12-stable-10) ... 184s Selecting previously unselected package libevent-extra-2.1-7t64:arm64. 184s Preparing to unpack .../192-libevent-extra-2.1-7t64_2.1.12-stable-10_arm64.deb ... 184s Unpacking libevent-extra-2.1-7t64:arm64 (2.1.12-stable-10) ... 184s Selecting previously unselected package libevent-openssl-2.1-7t64:arm64. 184s Preparing to unpack .../193-libevent-openssl-2.1-7t64_2.1.12-stable-10_arm64.deb ... 184s Unpacking libevent-openssl-2.1-7t64:arm64 (2.1.12-stable-10) ... 185s Selecting previously unselected package libevent-dev. 185s Preparing to unpack .../194-libevent-dev_2.1.12-stable-10_arm64.deb ... 185s Unpacking libevent-dev (2.1.12-stable-10) ... 185s Selecting previously unselected package zlib1g-dev:arm64. 185s Preparing to unpack .../195-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 185s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 185s Selecting previously unselected package libpmix-dev:arm64. 185s Preparing to unpack .../196-libpmix-dev_5.0.3-2_arm64.deb ... 185s Unpacking libpmix-dev:arm64 (5.0.3-2) ... 185s Selecting previously unselected package libjs-jquery. 186s Preparing to unpack .../197-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 186s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 186s Selecting previously unselected package libjs-jquery-ui. 186s Preparing to unpack .../198-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 186s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 186s Selecting previously unselected package openmpi-bin. 186s Preparing to unpack .../199-openmpi-bin_4.1.6-13.3ubuntu2_arm64.deb ... 186s Unpacking openmpi-bin (4.1.6-13.3ubuntu2) ... 186s Selecting previously unselected package libopenmpi-dev:arm64. 186s Preparing to unpack .../200-libopenmpi-dev_4.1.6-13.3ubuntu2_arm64.deb ... 186s Unpacking libopenmpi-dev:arm64 (4.1.6-13.3ubuntu2) ... 186s Selecting previously unselected package mpi-default-dev. 186s Preparing to unpack .../201-mpi-default-dev_1.17_arm64.deb ... 186s Unpacking mpi-default-dev (1.17) ... 186s Selecting previously unselected package libboost-mpi1.83-dev. 186s Preparing to unpack .../202-libboost-mpi1.83-dev_1.83.0-3.2ubuntu2_arm64.deb ... 186s Unpacking libboost-mpi1.83-dev (1.83.0-3.2ubuntu2) ... 186s Selecting previously unselected package libboost-mpi-dev. 186s Preparing to unpack .../203-libboost-mpi-dev_1.83.0.2ubuntu1_arm64.deb ... 186s Unpacking libboost-mpi-dev (1.83.0.2ubuntu1) ... 186s Selecting previously unselected package libboost-program-options1.83.0:arm64. 186s Preparing to unpack .../204-libboost-program-options1.83.0_1.83.0-3.2ubuntu2_arm64.deb ... 186s Unpacking libboost-program-options1.83.0:arm64 (1.83.0-3.2ubuntu2) ... 187s Selecting previously unselected package libboost-program-options1.83-dev:arm64. 187s Preparing to unpack .../205-libboost-program-options1.83-dev_1.83.0-3.2ubuntu2_arm64.deb ... 187s Unpacking libboost-program-options1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 187s Selecting previously unselected package libboost-program-options-dev:arm64. 187s Preparing to unpack .../206-libboost-program-options-dev_1.83.0.2ubuntu1_arm64.deb ... 187s Unpacking libboost-program-options-dev:arm64 (1.83.0.2ubuntu1) ... 187s Selecting previously unselected package libboost-serialization-dev:arm64. 187s Preparing to unpack .../207-libboost-serialization-dev_1.83.0.2ubuntu1_arm64.deb ... 187s Unpacking libboost-serialization-dev:arm64 (1.83.0.2ubuntu1) ... 187s Selecting previously unselected package libboost-thread1.83.0:arm64. 187s Preparing to unpack .../208-libboost-thread1.83.0_1.83.0-3.2ubuntu2_arm64.deb ... 187s Unpacking libboost-thread1.83.0:arm64 (1.83.0-3.2ubuntu2) ... 187s Selecting previously unselected package libboost-thread1.83-dev:arm64. 187s Preparing to unpack .../209-libboost-thread1.83-dev_1.83.0-3.2ubuntu2_arm64.deb ... 187s Unpacking libboost-thread1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 187s Selecting previously unselected package libboost-thread-dev:arm64. 187s Preparing to unpack .../210-libboost-thread-dev_1.83.0.2ubuntu1_arm64.deb ... 187s Unpacking libboost-thread-dev:arm64 (1.83.0.2ubuntu1) ... 187s Selecting previously unselected package libboost-timer1.83.0:arm64. 187s Preparing to unpack .../211-libboost-timer1.83.0_1.83.0-3.2ubuntu2_arm64.deb ... 187s Unpacking libboost-timer1.83.0:arm64 (1.83.0-3.2ubuntu2) ... 187s Selecting previously unselected package libboost-timer1.83-dev:arm64. 187s Preparing to unpack .../212-libboost-timer1.83-dev_1.83.0-3.2ubuntu2_arm64.deb ... 187s Unpacking libboost-timer1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 187s Selecting previously unselected package libboost-timer-dev:arm64. 187s Preparing to unpack .../213-libboost-timer-dev_1.83.0.2ubuntu1_arm64.deb ... 187s Unpacking libboost-timer-dev:arm64 (1.83.0.2ubuntu1) ... 187s Selecting previously unselected package libbrotli-dev:arm64. 188s Preparing to unpack .../214-libbrotli-dev_1.1.0-2build2_arm64.deb ... 188s Unpacking libbrotli-dev:arm64 (1.1.0-2build2) ... 188s Selecting previously unselected package libbtf2:arm64. 188s Preparing to unpack .../215-libbtf2_1%3a7.8.3+dfsg-2_arm64.deb ... 188s Unpacking libbtf2:arm64 (1:7.8.3+dfsg-2) ... 188s Selecting previously unselected package libcamd3:arm64. 188s Preparing to unpack .../216-libcamd3_1%3a7.8.3+dfsg-2_arm64.deb ... 188s Unpacking libcamd3:arm64 (1:7.8.3+dfsg-2) ... 188s Selecting previously unselected package libccolamd3:arm64. 188s Preparing to unpack .../217-libccolamd3_1%3a7.8.3+dfsg-2_arm64.deb ... 188s Unpacking libccolamd3:arm64 (1:7.8.3+dfsg-2) ... 188s Selecting previously unselected package libcolamd3:arm64. 188s Preparing to unpack .../218-libcolamd3_1%3a7.8.3+dfsg-2_arm64.deb ... 188s Unpacking libcolamd3:arm64 (1:7.8.3+dfsg-2) ... 188s Selecting previously unselected package libcholmod5:arm64. 188s Preparing to unpack .../219-libcholmod5_1%3a7.8.3+dfsg-2_arm64.deb ... 188s Unpacking libcholmod5:arm64 (1:7.8.3+dfsg-2) ... 188s Selecting previously unselected package libcombblas2.0.0t64:arm64. 188s Preparing to unpack .../220-libcombblas2.0.0t64_2.0.0-3.1build3_arm64.deb ... 188s Unpacking libcombblas2.0.0t64:arm64 (2.0.0-3.1build3) ... 188s Selecting previously unselected package libidn2-dev:arm64. 188s Preparing to unpack .../221-libidn2-dev_2.3.7-2build2_arm64.deb ... 188s Unpacking libidn2-dev:arm64 (2.3.7-2build2) ... 188s Selecting previously unselected package libpkgconf3:arm64. 188s Preparing to unpack .../222-libpkgconf3_1.8.1-4_arm64.deb ... 188s Unpacking libpkgconf3:arm64 (1.8.1-4) ... 188s Selecting previously unselected package pkgconf-bin. 188s Preparing to unpack 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Unpacking libgmp-dev:arm64 (2:6.3.0+dfsg-2ubuntu7) ... 189s Selecting previously unselected package libunbound8:arm64. 189s Preparing to unpack .../229-libunbound8_1.20.0-1ubuntu2.1_arm64.deb ... 189s Unpacking libunbound8:arm64 (1.20.0-1ubuntu2.1) ... 189s Selecting previously unselected package libgnutls-dane0t64:arm64. 189s Preparing to unpack .../230-libgnutls-dane0t64_3.8.6-2ubuntu1_arm64.deb ... 189s Unpacking libgnutls-dane0t64:arm64 (3.8.6-2ubuntu1) ... 189s Selecting previously unselected package libgnutls-openssl27t64:arm64. 189s Preparing to unpack .../231-libgnutls-openssl27t64_3.8.6-2ubuntu1_arm64.deb ... 189s Unpacking libgnutls-openssl27t64:arm64 (3.8.6-2ubuntu1) ... 189s Selecting previously unselected package libp11-kit-dev:arm64. 189s Preparing to unpack .../232-libp11-kit-dev_0.25.5-2ubuntu1_arm64.deb ... 189s Unpacking libp11-kit-dev:arm64 (0.25.5-2ubuntu1) ... 189s Selecting previously unselected package libtasn1-6-dev:arm64. 189s Preparing to unpack .../233-libtasn1-6-dev_4.19.0-3build1_arm64.deb ... 189s Unpacking libtasn1-6-dev:arm64 (4.19.0-3build1) ... 189s Selecting previously unselected package nettle-dev:arm64. 189s Preparing to unpack .../234-nettle-dev_3.10-1_arm64.deb ... 189s Unpacking nettle-dev:arm64 (3.10-1) ... 189s Selecting previously unselected package libgnutls28-dev:arm64. 189s Preparing to unpack .../235-libgnutls28-dev_3.8.6-2ubuntu1_arm64.deb ... 189s Unpacking libgnutls28-dev:arm64 (3.8.6-2ubuntu1) ... 189s Selecting previously unselected package librtmp-dev:arm64. 190s Preparing to unpack .../236-librtmp-dev_2.4+20151223.gitfa8646d.1-2build7_arm64.deb ... 190s Unpacking librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2build7) ... 190s Selecting previously unselected package libssl-dev:arm64. 190s Preparing to unpack .../237-libssl-dev_3.3.1-2ubuntu2_arm64.deb ... 190s Unpacking libssl-dev:arm64 (3.3.1-2ubuntu2) ... 190s Selecting previously unselected package libssh2-1-dev:arm64. 190s Preparing to unpack .../238-libssh2-1-dev_1.11.1-1_arm64.deb ... 190s Unpacking libssh2-1-dev:arm64 (1.11.1-1) ... 190s Selecting previously unselected package libzstd-dev:arm64. 190s Preparing to unpack .../239-libzstd-dev_1.5.6+dfsg-1_arm64.deb ... 190s Unpacking libzstd-dev:arm64 (1.5.6+dfsg-1) ... 190s Selecting previously unselected package libcurl4-openssl-dev:arm64. 190s Preparing to unpack .../240-libcurl4-openssl-dev_8.9.1-2ubuntu2_arm64.deb ... 190s Unpacking libcurl4-openssl-dev:arm64 (8.9.1-2ubuntu2) ... 190s Selecting previously unselected package libcxsparse4:arm64. 190s Preparing to unpack .../241-libcxsparse4_1%3a7.8.3+dfsg-2_arm64.deb ... 190s Unpacking libcxsparse4:arm64 (1:7.8.3+dfsg-2) ... 190s Selecting previously unselected package libdolfin-dev-common. 190s Preparing to unpack .../242-libdolfin-dev-common_2019.2.0~legacy20240219.1c52e83-10ubuntu1_all.deb ... 190s Unpacking libdolfin-dev-common (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 190s Selecting previously unselected package libsz2:arm64. 190s Preparing to unpack .../243-libsz2_1.1.3-1_arm64.deb ... 190s Unpacking libsz2:arm64 (1.1.3-1) ... 190s Selecting previously unselected package libhdf5-openmpi-103-1t64:arm64. 190s Preparing to unpack .../244-libhdf5-openmpi-103-1t64_1.10.10+repack-4ubuntu3_arm64.deb ... 190s Unpacking libhdf5-openmpi-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 190s Selecting previously unselected package libfftw3-double3:arm64. 190s Preparing to unpack .../245-libfftw3-double3_3.3.10-1ubuntu4_arm64.deb ... 190s Unpacking libfftw3-double3:arm64 (3.3.10-1ubuntu4) ... 190s Selecting previously unselected package libfftw3-long3:arm64. 190s Preparing to unpack .../246-libfftw3-long3_3.3.10-1ubuntu4_arm64.deb ... 190s Unpacking libfftw3-long3:arm64 (3.3.10-1ubuntu4) ... 190s Selecting previously unselected package libfftw3-single3:arm64. 190s Preparing to unpack .../247-libfftw3-single3_3.3.10-1ubuntu4_arm64.deb ... 190s Unpacking libfftw3-single3:arm64 (3.3.10-1ubuntu4) ... 190s Selecting previously unselected package libfftw3-mpi3:arm64. 190s Preparing to unpack .../248-libfftw3-mpi3_3.3.10-1ubuntu4_arm64.deb ... 190s Unpacking libfftw3-mpi3:arm64 (3.3.10-1ubuntu4) ... 190s Selecting previously unselected package libmetis5:arm64. 190s Preparing to unpack .../249-libmetis5_5.1.0.dfsg-7build3_arm64.deb ... 190s Unpacking libmetis5:arm64 (5.1.0.dfsg-7build3) ... 191s Selecting previously unselected package libptscotch-7.0:arm64. 191s Preparing to unpack .../250-libptscotch-7.0_7.0.5-1ubuntu1_arm64.deb ... 191s Unpacking libptscotch-7.0:arm64 (7.0.5-1ubuntu1) ... 191s Selecting previously unselected package libsuperlu-dist8:arm64. 191s Preparing to unpack .../251-libsuperlu-dist8_8.2.1+dfsg1-2_arm64.deb ... 191s Unpacking libsuperlu-dist8:arm64 (8.2.1+dfsg1-2) ... 191s Selecting previously unselected package libhypre-2.31.0:arm64. 191s Preparing to unpack .../252-libhypre-2.31.0_2.31.0-1exp2_arm64.deb ... 191s Unpacking libhypre-2.31.0:arm64 (2.31.0-1exp2) ... 191s Selecting previously unselected package libklu2:arm64. 191s Preparing to unpack .../253-libklu2_1%3a7.8.3+dfsg-2_arm64.deb ... 191s Unpacking libklu2:arm64 (1:7.8.3+dfsg-2) ... 191s Selecting previously unselected package mpi-default-bin. 191s Preparing to unpack .../254-mpi-default-bin_1.17_arm64.deb ... 191s Unpacking mpi-default-bin (1.17) ... 191s Selecting previously unselected package libscalapack-openmpi2.2:arm64. 191s Preparing to unpack .../255-libscalapack-openmpi2.2_2.2.1-3.1ubuntu2_arm64.deb ... 191s Unpacking libscalapack-openmpi2.2:arm64 (2.2.1-3.1ubuntu2) ... 191s Selecting previously unselected package libmumps-5.6t64:arm64. 191s Preparing to unpack .../256-libmumps-5.6t64_5.6.2-2.1build3_arm64.deb ... 191s Unpacking libmumps-5.6t64:arm64 (5.6.2-2.1build3) ... 191s Selecting previously unselected package libspqr4:arm64. 191s Preparing to unpack .../257-libspqr4_1%3a7.8.3+dfsg-2_arm64.deb ... 191s Unpacking libspqr4:arm64 (1:7.8.3+dfsg-2) ... 191s Selecting previously unselected package libsuperlu6:arm64. 191s Preparing to unpack .../258-libsuperlu6_6.0.1+dfsg1-1build3_arm64.deb ... 191s Unpacking libsuperlu6:arm64 (6.0.1+dfsg1-1build3) ... 191s Selecting previously unselected package libscotch-7.0:arm64. 191s Preparing to unpack .../259-libscotch-7.0_7.0.5-1ubuntu1_arm64.deb ... 191s Unpacking libscotch-7.0:arm64 (7.0.5-1ubuntu1) ... 191s Selecting previously unselected package libtrilinos-kokkos-13.2:arm64. 191s Preparing to unpack .../260-libtrilinos-kokkos-13.2_13.2.0-6_arm64.deb ... 191s Unpacking libtrilinos-kokkos-13.2:arm64 (13.2.0-6) ... 191s Selecting previously unselected package libtrilinos-teuchos-13.2:arm64. 191s Preparing to unpack .../261-libtrilinos-teuchos-13.2_13.2.0-6_arm64.deb ... 191s Unpacking libtrilinos-teuchos-13.2:arm64 (13.2.0-6) ... 191s Selecting previously unselected package libtrilinos-epetra-13.2:arm64. 191s Preparing to unpack .../262-libtrilinos-epetra-13.2_13.2.0-6_arm64.deb ... 191s Unpacking libtrilinos-epetra-13.2:arm64 (13.2.0-6) ... 191s Selecting previously unselected package libtrilinos-triutils-13.2:arm64. 192s Preparing to unpack .../263-libtrilinos-triutils-13.2_13.2.0-6_arm64.deb ... 192s Unpacking libtrilinos-triutils-13.2:arm64 (13.2.0-6) ... 192s Selecting previously unselected package libtrilinos-epetraext-13.2:arm64. 192s Preparing to unpack .../264-libtrilinos-epetraext-13.2_13.2.0-6_arm64.deb ... 192s Unpacking libtrilinos-epetraext-13.2:arm64 (13.2.0-6) ... 192s Selecting previously unselected package libtrilinos-trilinosss-13.2:arm64. 192s Preparing to unpack .../265-libtrilinos-trilinosss-13.2_13.2.0-6_arm64.deb ... 192s Unpacking libtrilinos-trilinosss-13.2:arm64 (13.2.0-6) ... 192s Selecting previously unselected package libtrilinos-amesos-13.2:arm64. 192s Preparing to unpack .../266-libtrilinos-amesos-13.2_13.2.0-6_arm64.deb ... 192s Unpacking libtrilinos-amesos-13.2:arm64 (13.2.0-6) ... 192s Selecting previously unselected package libtrilinos-aztecoo-13.2:arm64. 192s Preparing to unpack .../267-libtrilinos-aztecoo-13.2_13.2.0-6_arm64.deb ... 192s Unpacking libtrilinos-aztecoo-13.2:arm64 (13.2.0-6) ... 192s Selecting previously unselected package libtrilinos-galeri-13.2:arm64. 192s Preparing to unpack .../268-libtrilinos-galeri-13.2_13.2.0-6_arm64.deb ... 192s Unpacking libtrilinos-galeri-13.2:arm64 (13.2.0-6) ... 192s Selecting previously unselected package libtrilinos-ifpack-13.2:arm64. 192s Preparing to unpack .../269-libtrilinos-ifpack-13.2_13.2.0-6_arm64.deb ... 192s Unpacking libtrilinos-ifpack-13.2:arm64 (13.2.0-6) ... 192s Selecting previously unselected package libtrilinos-zoltan-13.2:arm64. 192s Preparing to unpack .../270-libtrilinos-zoltan-13.2_13.2.0-6_arm64.deb ... 192s Unpacking libtrilinos-zoltan-13.2:arm64 (13.2.0-6) ... 192s Selecting previously unselected package libtrilinos-ml-13.2:arm64. 192s Preparing to unpack .../271-libtrilinos-ml-13.2_13.2.0-6_arm64.deb ... 192s Unpacking libtrilinos-ml-13.2:arm64 (13.2.0-6) ... 192s Selecting previously unselected package libumfpack6:arm64. 192s Preparing to unpack .../272-libumfpack6_1%3a7.8.3+dfsg-2_arm64.deb ... 192s Unpacking libumfpack6:arm64 (1:7.8.3+dfsg-2) ... 192s Selecting previously unselected package libpetsc-real3.20:arm64. 192s Preparing to unpack .../273-libpetsc-real3.20_3.20.6+dfsg1-3ubuntu3_arm64.deb ... 192s Unpacking libpetsc-real3.20:arm64 (3.20.6+dfsg1-3ubuntu3) ... 192s Selecting previously unselected package libparpack2t64:arm64. 192s Preparing to unpack .../274-libparpack2t64_3.9.1-1.1ubuntu1_arm64.deb ... 192s Unpacking libparpack2t64:arm64 (3.9.1-1.1ubuntu1) ... 192s Selecting previously unselected package libslepc-real3.20. 192s Preparing to unpack .../275-libslepc-real3.20_3.20.2+dfsg1-2build1_arm64.deb ... 192s Unpacking libslepc-real3.20 (3.20.2+dfsg1-2build1) ... 192s Selecting previously unselected package libdolfin2019.2t64:arm64. 192s Preparing to unpack .../276-libdolfin2019.2t64_2019.2.0~legacy20240219.1c52e83-10ubuntu1_arm64.deb ... 192s Unpacking libdolfin2019.2t64:arm64 (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 193s Selecting previously unselected package libopenblas64-0-pthread:arm64. 193s Preparing to unpack .../277-libopenblas64-0-pthread_0.3.28+ds-3_arm64.deb ... 193s Unpacking libopenblas64-0-pthread:arm64 (0.3.28+ds-3) ... 193s Selecting previously unselected package liblapack64-3:arm64. 193s Preparing to unpack .../278-liblapack64-3_3.12.0-3build2_arm64.deb ... 193s Unpacking liblapack64-3:arm64 (3.12.0-3build2) ... 193s Selecting previously unselected package libhypre64m-2.31.0:arm64. 193s Preparing to unpack .../279-libhypre64m-2.31.0_2.31.0-1exp2_arm64.deb ... 193s Unpacking libhypre64m-2.31.0:arm64 (2.31.0-1exp2) ... 193s Selecting previously unselected package libmumps-64pord-5.6t64:arm64. 193s Preparing to unpack .../280-libmumps-64pord-5.6t64_5.6.2-2.1build3_arm64.deb ... 193s Unpacking libmumps-64pord-5.6t64:arm64 (5.6.2-2.1build3) ... 193s Selecting previously unselected package libpetsc64-real3.20:arm64. 193s Preparing to unpack .../281-libpetsc64-real3.20_3.20.6+dfsg1-3ubuntu3_arm64.deb ... 193s Unpacking libpetsc64-real3.20:arm64 (3.20.6+dfsg1-3ubuntu3) ... 193s Selecting previously unselected package libslepc64-real3.20. 193s Preparing to unpack .../282-libslepc64-real3.20_3.20.2+dfsg1-2build1_arm64.deb ... 193s Unpacking libslepc64-real3.20 (3.20.2+dfsg1-2build1) ... 193s Selecting previously unselected package libdolfin64-2019.2t64:arm64. 193s Preparing to unpack .../283-libdolfin64-2019.2t64_2019.2.0~legacy20240219.1c52e83-10ubuntu1_arm64.deb ... 193s Unpacking libdolfin64-2019.2t64:arm64 (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 193s Selecting previously unselected package pkg-config:arm64. 193s Preparing to unpack .../284-pkg-config_1.8.1-4_arm64.deb ... 193s Unpacking pkg-config:arm64 (1.8.1-4) ... 193s Selecting previously unselected package libeigen3-dev. 193s Preparing to unpack .../285-libeigen3-dev_3.4.0-4build1_all.deb ... 193s Unpacking libeigen3-dev (3.4.0-4build1) ... 194s Selecting previously unselected package libhdf5-openmpi-fortran-102t64:arm64. 194s Preparing to unpack .../286-libhdf5-openmpi-fortran-102t64_1.10.10+repack-4ubuntu3_arm64.deb ... 194s Unpacking libhdf5-openmpi-fortran-102t64:arm64 (1.10.10+repack-4ubuntu3) ... 194s Selecting previously unselected package libhdf5-openmpi-hl-100t64:arm64. 194s Preparing to unpack .../287-libhdf5-openmpi-hl-100t64_1.10.10+repack-4ubuntu3_arm64.deb ... 194s Unpacking libhdf5-openmpi-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 194s Selecting previously unselected package libhdf5-openmpi-hl-fortran-100t64:arm64. 194s Preparing to unpack .../288-libhdf5-openmpi-hl-fortran-100t64_1.10.10+repack-4ubuntu3_arm64.deb ... 194s Unpacking libhdf5-openmpi-hl-fortran-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 194s Selecting previously unselected package libhdf5-openmpi-cpp-103-1t64:arm64. 194s Preparing to unpack .../289-libhdf5-openmpi-cpp-103-1t64_1.10.10+repack-4ubuntu3_arm64.deb ... 194s Unpacking libhdf5-openmpi-cpp-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 194s Selecting previously unselected package libhdf5-openmpi-hl-cpp-100t64:arm64. 194s Preparing to unpack .../290-libhdf5-openmpi-hl-cpp-100t64_1.10.10+repack-4ubuntu3_arm64.deb ... 194s Unpacking libhdf5-openmpi-hl-cpp-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 194s Selecting previously unselected package libaec-dev:arm64. 194s Preparing to unpack .../291-libaec-dev_1.1.3-1_arm64.deb ... 194s Unpacking libaec-dev:arm64 (1.1.3-1) ... 194s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 194s Preparing to unpack .../292-libjpeg-turbo8-dev_2.1.5-2ubuntu2_arm64.deb ... 194s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu2) ... 194s Selecting previously unselected package libjpeg8-dev:arm64. 194s Preparing to unpack .../293-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 194s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 194s Selecting previously unselected package libjpeg-dev:arm64. 194s Preparing to unpack .../294-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 194s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 194s Selecting previously unselected package libhdf5-openmpi-dev. 194s Preparing to unpack .../295-libhdf5-openmpi-dev_1.10.10+repack-4ubuntu3_arm64.deb ... 194s Unpacking libhdf5-openmpi-dev (1.10.10+repack-4ubuntu3) ... 194s Selecting previously unselected package libhdf5-mpi-dev. 194s Preparing to unpack .../296-libhdf5-mpi-dev_1.10.10+repack-4ubuntu3_arm64.deb ... 194s Unpacking libhdf5-mpi-dev (1.10.10+repack-4ubuntu3) ... 194s Selecting previously unselected package libldl3:arm64. 194s Preparing to unpack .../297-libldl3_1%3a7.8.3+dfsg-2_arm64.deb ... 194s Unpacking libldl3:arm64 (1:7.8.3+dfsg-2) ... 195s Selecting previously unselected package libsuitesparse-mongoose3:arm64. 195s Preparing to unpack .../298-libsuitesparse-mongoose3_1%3a7.8.3+dfsg-2_arm64.deb ... 195s Unpacking libsuitesparse-mongoose3:arm64 (1:7.8.3+dfsg-2) ... 195s Selecting previously unselected package librbio4:arm64. 195s Preparing to unpack .../299-librbio4_1%3a7.8.3+dfsg-2_arm64.deb ... 195s Unpacking librbio4:arm64 (1:7.8.3+dfsg-2) ... 195s Selecting previously unselected package libspex3:arm64. 195s Preparing to unpack .../300-libspex3_1%3a7.8.3+dfsg-2_arm64.deb ... 195s Unpacking libspex3:arm64 (1:7.8.3+dfsg-2) ... 195s Selecting previously unselected package libparu1:arm64. 195s Preparing to unpack .../301-libparu1_1%3a7.8.3+dfsg-2_arm64.deb ... 195s Unpacking libparu1:arm64 (1:7.8.3+dfsg-2) ... 195s Selecting previously unselected package libsuitesparse-dev:arm64. 195s Preparing to unpack .../302-libsuitesparse-dev_1%3a7.8.3+dfsg-2_arm64.deb ... 195s Unpacking libsuitesparse-dev:arm64 (1:7.8.3+dfsg-2) ... 195s Selecting previously unselected package libscotch-dev. 195s Preparing to unpack .../303-libscotch-dev_7.0.5-1ubuntu1_arm64.deb ... 195s Unpacking libscotch-dev (7.0.5-1ubuntu1) ... 195s Selecting previously unselected package liblzma-dev:arm64. 195s Preparing to unpack .../304-liblzma-dev_5.6.2-2_arm64.deb ... 195s Unpacking liblzma-dev:arm64 (5.6.2-2) ... 195s Selecting previously unselected package libxml2-dev:arm64. 195s Preparing to unpack .../305-libxml2-dev_2.12.7+dfsg-3_arm64.deb ... 195s Unpacking libxml2-dev:arm64 (2.12.7+dfsg-3) ... 195s Selecting previously unselected package python3-numpy. 195s Preparing to unpack .../306-python3-numpy_1%3a1.26.4+ds-11build1_arm64.deb ... 195s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 195s Selecting previously unselected package python3-mpi4py. 195s Preparing to unpack .../307-python3-mpi4py_3.1.6-9ubuntu1_arm64.deb ... 195s Unpacking python3-mpi4py (3.1.6-9ubuntu1) ... 195s Selecting previously unselected package python3-dijitso. 195s Preparing to unpack .../308-python3-dijitso_2019.2.0~git20190418.c92dcb0-4_all.deb ... 195s Unpacking python3-dijitso (2019.2.0~git20190418.c92dcb0-4) ... 195s Selecting previously unselected package python3-mpmath. 195s Preparing to unpack .../309-python3-mpmath_1.3.0-1_all.deb ... 195s Unpacking python3-mpmath (1.3.0-1) ... 196s Selecting previously unselected package python3-sympy. 196s Preparing to unpack .../310-python3-sympy_1.13.3-1_all.deb ... 196s Unpacking python3-sympy (1.13.3-1) ... 196s Selecting previously unselected package python3-fiat. 196s Preparing to unpack .../311-python3-fiat_2019.2.0~git20210419.7d418fa-5_all.deb ... 196s Unpacking python3-fiat (2019.2.0~git20210419.7d418fa-5) ... 196s Selecting previously unselected package python3-ufl-legacy. 196s Preparing to unpack .../312-python3-ufl-legacy_1%3a2022.3.0-3_all.deb ... 196s Unpacking python3-ufl-legacy (1:2022.3.0-3) ... 196s Selecting previously unselected package python3-ffc. 196s Preparing to unpack .../313-python3-ffc_2019.2.0~legacy20230509.35df986-3_all.deb ... 196s Unpacking python3-ffc (2019.2.0~legacy20230509.35df986-3) ... 196s Selecting previously unselected package libjs-mathjax. 196s Preparing to unpack .../314-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 196s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 197s Selecting previously unselected package libptscotch-dev. 197s Preparing to unpack .../315-libptscotch-dev_7.0.5-1ubuntu1_arm64.deb ... 197s Unpacking libptscotch-dev (7.0.5-1ubuntu1) ... 197s Selecting previously unselected package libscalapack-openmpi-dev:arm64. 197s Preparing to unpack .../316-libscalapack-openmpi-dev_2.2.1-3.1ubuntu2_arm64.deb ... 197s Unpacking libscalapack-openmpi-dev:arm64 (2.2.1-3.1ubuntu2) ... 197s Selecting previously unselected package libscalapack-mpi-dev:arm64. 197s Preparing to unpack .../317-libscalapack-mpi-dev_2.2.1-3.1ubuntu2_arm64.deb ... 197s Unpacking libscalapack-mpi-dev:arm64 (2.2.1-3.1ubuntu2) ... 197s Selecting previously unselected package libfftw3-bin. 197s Preparing to unpack .../318-libfftw3-bin_3.3.10-1ubuntu4_arm64.deb ... 197s Unpacking libfftw3-bin (3.3.10-1ubuntu4) ... 197s Selecting previously unselected package libfftw3-dev:arm64. 197s Preparing to unpack .../319-libfftw3-dev_3.3.10-1ubuntu4_arm64.deb ... 197s Unpacking libfftw3-dev:arm64 (3.3.10-1ubuntu4) ... 197s Selecting previously unselected package libfftw3-mpi-dev:arm64. 197s Preparing to unpack .../320-libfftw3-mpi-dev_3.3.10-1ubuntu4_arm64.deb ... 197s Unpacking libfftw3-mpi-dev:arm64 (3.3.10-1ubuntu4) ... 197s Selecting previously unselected package opencl-c-headers. 197s Preparing to unpack .../321-opencl-c-headers_3.0~2024.05.08-1_all.deb ... 197s Unpacking opencl-c-headers (3.0~2024.05.08-1) ... 197s Selecting previously unselected package opencl-clhpp-headers. 197s Preparing to unpack .../322-opencl-clhpp-headers_3.0~2024.05.08-1ubuntu1_all.deb ... 197s Unpacking opencl-clhpp-headers (3.0~2024.05.08-1ubuntu1) ... 197s Selecting previously unselected package ocl-icd-opencl-dev:arm64. 197s Preparing to unpack .../323-ocl-icd-opencl-dev_2.3.2-1build1_arm64.deb ... 197s Unpacking ocl-icd-opencl-dev:arm64 (2.3.2-1build1) ... 197s Selecting previously unselected package libsuperlu7:arm64. 197s Preparing to unpack .../324-libsuperlu7_7.0.0+dfsg1-2_arm64.deb ... 197s Unpacking libsuperlu7:arm64 (7.0.0+dfsg1-2) ... 197s Selecting previously unselected package libsuperlu-dev:arm64. 197s Preparing to unpack .../325-libsuperlu-dev_7.0.0+dfsg1-2_arm64.deb ... 197s Unpacking libsuperlu-dev:arm64 (7.0.0+dfsg1-2) ... 197s Selecting previously unselected package libsuperlu-dist-dev:arm64. 197s Preparing to unpack .../326-libsuperlu-dist-dev_8.2.1+dfsg1-2_arm64.deb ... 197s Unpacking libsuperlu-dist-dev:arm64 (8.2.1+dfsg1-2) ... 197s Selecting previously unselected package xorg-sgml-doctools. 198s Preparing to unpack .../327-xorg-sgml-doctools_1%3a1.11-1.1_all.deb ... 198s Unpacking xorg-sgml-doctools (1:1.11-1.1) ... 198s Selecting previously unselected package x11proto-dev. 198s Preparing to unpack .../328-x11proto-dev_2024.1-1_all.deb ... 198s Unpacking x11proto-dev (2024.1-1) ... 198s Selecting previously unselected package libxau-dev:arm64. 198s Preparing to unpack .../329-libxau-dev_1%3a1.0.11-1_arm64.deb ... 198s Unpacking libxau-dev:arm64 (1:1.0.11-1) ... 198s Selecting previously unselected package libxdmcp-dev:arm64. 198s Preparing to unpack .../330-libxdmcp-dev_1%3a1.1.3-0ubuntu6_arm64.deb ... 198s Unpacking libxdmcp-dev:arm64 (1:1.1.3-0ubuntu6) ... 198s Selecting previously unselected package xtrans-dev. 198s Preparing to unpack .../331-xtrans-dev_1.4.0-1_all.deb ... 198s Unpacking xtrans-dev (1.4.0-1) ... 198s Selecting previously unselected package libxcb1-dev:arm64. 198s Preparing to unpack .../332-libxcb1-dev_1.17.0-2_arm64.deb ... 198s Unpacking libxcb1-dev:arm64 (1.17.0-2) ... 198s Selecting previously unselected package libx11-dev:arm64. 198s Preparing to unpack .../333-libx11-dev_2%3a1.8.10-2_arm64.deb ... 198s Unpacking libx11-dev:arm64 (2:1.8.10-2) ... 198s Selecting previously unselected package libyaml-dev:arm64. 198s Preparing to unpack .../334-libyaml-dev_0.2.5-1build1_arm64.deb ... 198s Unpacking libyaml-dev:arm64 (0.2.5-1build1) ... 198s Selecting previously unselected package libpetsc3.20-dev-common. 198s Preparing to unpack .../335-libpetsc3.20-dev-common_3.20.6+dfsg1-3ubuntu3_all.deb ... 198s Unpacking libpetsc3.20-dev-common (3.20.6+dfsg1-3ubuntu3) ... 198s Selecting previously unselected package libhypre-dev:arm64. 198s Preparing to unpack .../336-libhypre-dev_2.31.0-1exp2_arm64.deb ... 198s Unpacking libhypre-dev:arm64 (2.31.0-1exp2) ... 198s Selecting previously unselected package libmumps-headers-dev. 198s Preparing to unpack .../337-libmumps-headers-dev_5.6.2-2.1build3_all.deb ... 198s Unpacking libmumps-headers-dev (5.6.2-2.1build3) ... 198s Selecting previously unselected package libmumps-dev:arm64. 198s Preparing to unpack .../338-libmumps-dev_5.6.2-2.1build3_arm64.deb ... 198s Unpacking libmumps-dev:arm64 (5.6.2-2.1build3) ... 198s Selecting previously unselected package trilinos-dev:arm64. 198s Preparing to unpack .../339-trilinos-dev_13.2.0-6_arm64.deb ... 198s Unpacking trilinos-dev:arm64 (13.2.0-6) ... 198s Selecting previously unselected package libtrilinos-aztecoo-dev:arm64. 198s Preparing to unpack .../340-libtrilinos-aztecoo-dev_13.2.0-6_arm64.deb ... 198s Unpacking libtrilinos-aztecoo-dev:arm64 (13.2.0-6) ... 198s Selecting previously unselected package libtrilinos-trilinosss-dev:arm64. 199s Preparing to unpack .../341-libtrilinos-trilinosss-dev_13.2.0-6_arm64.deb ... 199s Unpacking libtrilinos-trilinosss-dev:arm64 (13.2.0-6) ... 199s Selecting previously unselected package libtrilinos-ml-dev:arm64. 199s Preparing to unpack .../342-libtrilinos-ml-dev_13.2.0-6_arm64.deb ... 199s Unpacking libtrilinos-ml-dev:arm64 (13.2.0-6) ... 199s Selecting previously unselected package libtrilinos-zoltan-dev:arm64. 199s Preparing to unpack .../343-libtrilinos-zoltan-dev_13.2.0-6_arm64.deb ... 199s Unpacking libtrilinos-zoltan-dev:arm64 (13.2.0-6) ... 199s Selecting previously unselected package libc6-dbg:arm64. 199s Preparing to unpack .../344-libc6-dbg_2.40-1ubuntu3_arm64.deb ... 199s Unpacking libc6-dbg:arm64 (2.40-1ubuntu3) ... 199s Selecting previously unselected package valgrind. 199s Preparing to unpack .../345-valgrind_1%3a3.23.0-0ubuntu2_arm64.deb ... 199s Unpacking valgrind (1:3.23.0-0ubuntu2) ... 199s Selecting previously unselected package valgrind-mpi. 199s Preparing to unpack .../346-valgrind-mpi_1%3a3.23.0-0ubuntu2_arm64.deb ... 199s Unpacking valgrind-mpi (1:3.23.0-0ubuntu2) ... 199s Selecting previously unselected package libpetsc-real3.20-dev:arm64. 199s Preparing to unpack .../347-libpetsc-real3.20-dev_3.20.6+dfsg1-3ubuntu3_arm64.deb ... 199s Unpacking libpetsc-real3.20-dev:arm64 (3.20.6+dfsg1-3ubuntu3) ... 199s Selecting previously unselected package libparpack2-dev:arm64. 199s Preparing to unpack .../348-libparpack2-dev_3.9.1-1.1ubuntu1_arm64.deb ... 199s Unpacking libparpack2-dev:arm64 (3.9.1-1.1ubuntu1) ... 199s Selecting previously unselected package libslepc-real3.20-dev. 200s Preparing to unpack .../349-libslepc-real3.20-dev_3.20.2+dfsg1-2build1_arm64.deb ... 200s Unpacking libslepc-real3.20-dev (3.20.2+dfsg1-2build1) ... 200s Selecting previously unselected package libdolfin-dev:arm64. 200s Preparing to unpack .../350-libdolfin-dev_2019.2.0~legacy20240219.1c52e83-10ubuntu1_arm64.deb ... 200s Unpacking libdolfin-dev:arm64 (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 200s Selecting previously unselected package libopenblas64-0:arm64. 200s Preparing to unpack .../351-libopenblas64-0_0.3.28+ds-3_arm64.deb ... 200s Unpacking libopenblas64-0:arm64 (0.3.28+ds-3) ... 200s Selecting previously unselected package libopenblas64-pthread-dev:arm64. 200s Preparing to unpack .../352-libopenblas64-pthread-dev_0.3.28+ds-3_arm64.deb ... 200s Unpacking libopenblas64-pthread-dev:arm64 (0.3.28+ds-3) ... 200s Selecting previously unselected package libopenblas64-dev:arm64. 200s Preparing to unpack .../353-libopenblas64-dev_0.3.28+ds-3_arm64.deb ... 200s Unpacking libopenblas64-dev:arm64 (0.3.28+ds-3) ... 200s Selecting previously unselected package libhypre64m-dev:arm64. 200s Preparing to unpack .../354-libhypre64m-dev_2.31.0-1exp2_arm64.deb ... 200s Unpacking libhypre64m-dev:arm64 (2.31.0-1exp2) ... 200s Selecting previously unselected package libmumps64-dev:arm64. 200s Preparing to unpack .../355-libmumps64-dev_5.6.2-2.1build3_arm64.deb ... 200s Unpacking libmumps64-dev:arm64 (5.6.2-2.1build3) ... 200s Selecting previously unselected package libpetsc64-real3.20-dev:arm64. 200s Preparing to unpack .../356-libpetsc64-real3.20-dev_3.20.6+dfsg1-3ubuntu3_arm64.deb ... 200s Unpacking libpetsc64-real3.20-dev:arm64 (3.20.6+dfsg1-3ubuntu3) ... 200s Selecting previously unselected package libslepc64-real3.20-dev. 200s Preparing to unpack .../357-libslepc64-real3.20-dev_3.20.2+dfsg1-2build1_arm64.deb ... 200s Unpacking libslepc64-real3.20-dev (3.20.2+dfsg1-2build1) ... 201s Selecting previously unselected package libdolfin64-dev:arm64. 201s Preparing to unpack .../358-libdolfin64-dev_2019.2.0~legacy20240219.1c52e83-10ubuntu1_arm64.deb ... 201s Unpacking libdolfin64-dev:arm64 (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 201s Selecting previously unselected package libexpat1-dev:arm64. 201s Preparing to unpack .../359-libexpat1-dev_2.6.2-2_arm64.deb ... 201s Unpacking libexpat1-dev:arm64 (2.6.2-2) ... 201s Selecting previously unselected package libjs-underscore. 201s Preparing to unpack .../360-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 201s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 201s Selecting previously unselected package libjs-sphinxdoc. 201s Preparing to unpack .../361-libjs-sphinxdoc_7.4.7-4_all.deb ... 201s Unpacking libjs-sphinxdoc (7.4.7-4) ... 201s Selecting previously unselected package libjson-perl. 201s Preparing to unpack .../362-libjson-perl_4.10000-1_all.deb ... 201s Unpacking libjson-perl (4.10000-1) ... 201s Selecting previously unselected package libpetsc-real-dev. 201s Preparing to unpack .../363-libpetsc-real-dev_3.20.6+dfsg1-3ubuntu3_all.deb ... 201s Unpacking libpetsc-real-dev (3.20.6+dfsg1-3ubuntu3) ... 201s Selecting previously unselected package libpetsc64-real-dev. 201s Preparing to unpack .../364-libpetsc64-real-dev_3.20.6+dfsg1-3ubuntu3_all.deb ... 201s Unpacking libpetsc64-real-dev (3.20.6+dfsg1-3ubuntu3) ... 201s Selecting previously unselected package libpython3.12-dev:arm64. 201s Preparing to unpack .../365-libpython3.12-dev_3.12.7-3_arm64.deb ... 201s Unpacking libpython3.12-dev:arm64 (3.12.7-3) ... 202s Selecting previously unselected package libpython3-dev:arm64. 202s Preparing to unpack .../366-libpython3-dev_3.12.7-1_arm64.deb ... 202s Unpacking libpython3-dev:arm64 (3.12.7-1) ... 202s Selecting previously unselected package libpython3.13-stdlib:arm64. 202s Preparing to unpack .../367-libpython3.13-stdlib_3.13.0-2_arm64.deb ... 202s Unpacking libpython3.13-stdlib:arm64 (3.13.0-2) ... 202s Selecting previously unselected package libpython3.13:arm64. 202s Preparing to unpack .../368-libpython3.13_3.13.0-2_arm64.deb ... 202s Unpacking libpython3.13:arm64 (3.13.0-2) ... 202s Selecting previously unselected package libpython3.13-dev:arm64. 202s Preparing to unpack .../369-libpython3.13-dev_3.13.0-2_arm64.deb ... 202s Unpacking libpython3.13-dev:arm64 (3.13.0-2) ... 202s Selecting previously unselected package libpython3-all-dev:arm64. 202s Preparing to unpack .../370-libpython3-all-dev_3.12.7-1_arm64.deb ... 202s Unpacking libpython3-all-dev:arm64 (3.12.7-1) ... 202s Selecting previously unselected package petsc64-dev. 202s Preparing to unpack .../371-petsc64-dev_3.20.6+dfsg1-3ubuntu3_all.deb ... 202s Unpacking petsc64-dev (3.20.6+dfsg1-3ubuntu3) ... 202s Selecting previously unselected package pybind11-dev. 202s Preparing to unpack .../372-pybind11-dev_2.13.6-1_all.deb ... 202s Unpacking pybind11-dev (2.13.6-1) ... 203s Selecting previously unselected package sphinx-common. 203s Preparing to unpack .../373-sphinx-common_7.4.7-4_all.deb ... 203s Unpacking sphinx-common (7.4.7-4) ... 203s Selecting previously unselected package python-petsc4py-doc. 203s Preparing to unpack .../374-python-petsc4py-doc_3.20.5-4ubuntu1_all.deb ... 203s Unpacking python-petsc4py-doc (3.20.5-4ubuntu1) ... 203s Selecting previously unselected package python3.13. 203s Preparing to unpack .../375-python3.13_3.13.0-2_arm64.deb ... 203s Unpacking python3.13 (3.13.0-2) ... 203s Selecting previously unselected package python3-all. 203s Preparing to unpack .../376-python3-all_3.12.7-1_arm64.deb ... 203s Unpacking python3-all (3.12.7-1) ... 203s Selecting previously unselected package python3.12-dev. 203s Preparing to unpack .../377-python3.12-dev_3.12.7-3_arm64.deb ... 203s Unpacking python3.12-dev (3.12.7-3) ... 203s Selecting previously unselected package python3-dev. 203s Preparing to unpack .../378-python3-dev_3.12.7-1_arm64.deb ... 203s Unpacking python3-dev (3.12.7-1) ... 203s Selecting previously unselected package python3.13-dev. 204s Preparing to unpack .../379-python3.13-dev_3.13.0-2_arm64.deb ... 204s Unpacking python3.13-dev (3.13.0-2) ... 204s Selecting previously unselected package python3-all-dev. 204s Preparing to unpack .../380-python3-all-dev_3.12.7-1_arm64.deb ... 204s Unpacking python3-all-dev (3.12.7-1) ... 204s Selecting previously unselected package python3-defusedxml. 204s Preparing to unpack .../381-python3-defusedxml_0.7.1-2_all.deb ... 204s Unpacking python3-defusedxml (0.7.1-2) ... 204s Selecting previously unselected package python3-roman. 204s Preparing to unpack .../382-python3-roman_4.2-1_all.deb ... 204s Unpacking python3-roman (4.2-1) ... 204s Selecting previously unselected package python3-docutils. 204s Preparing to unpack .../383-python3-docutils_0.21.2+dfsg-2_all.deb ... 204s Unpacking python3-docutils (0.21.2+dfsg-2) ... 204s Selecting previously unselected package swig. 204s Preparing to unpack .../384-swig_4.2.1-1_arm64.deb ... 204s Unpacking swig (4.2.1-1) ... 204s Selecting previously unselected package python3-petsc4py-real3.20. 204s Preparing to unpack .../385-python3-petsc4py-real3.20_3.20.5-4ubuntu1_arm64.deb ... 204s Unpacking python3-petsc4py-real3.20 (3.20.5-4ubuntu1) ... 204s Selecting previously unselected package python3-petsc4py-real. 204s Preparing to unpack .../386-python3-petsc4py-real_3.20.5-4ubuntu1_all.deb ... 204s Unpacking python3-petsc4py-real (3.20.5-4ubuntu1) ... 204s Selecting previously unselected package python3-slepc4py-real3.20. 204s Preparing to unpack .../387-python3-slepc4py-real3.20_3.20.2-1ubuntu2_arm64.deb ... 204s Unpacking python3-slepc4py-real3.20 (3.20.2-1ubuntu2) ... 204s Selecting previously unselected package python3-slepc4py-real. 204s Preparing to unpack .../388-python3-slepc4py-real_3.20.2-1ubuntu2_all.deb ... 204s Unpacking python3-slepc4py-real (3.20.2-1ubuntu2) ... 205s Selecting previously unselected package python3-dolfin-real. 205s Preparing to unpack .../389-python3-dolfin-real_2019.2.0~legacy20240219.1c52e83-10ubuntu1_arm64.deb ... 205s Unpacking python3-dolfin-real (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 205s Selecting previously unselected package python3-petsc4py-64-real3.20. 205s Preparing to unpack .../390-python3-petsc4py-64-real3.20_3.20.5-4ubuntu1_arm64.deb ... 205s Unpacking python3-petsc4py-64-real3.20 (3.20.5-4ubuntu1) ... 205s Selecting previously unselected package python3-petsc4py-64-real. 205s Preparing to unpack .../391-python3-petsc4py-64-real_3.20.5-4ubuntu1_all.deb ... 205s Unpacking python3-petsc4py-64-real (3.20.5-4ubuntu1) ... 205s Selecting previously unselected package python3-slepc4py-64-real3.20. 205s Preparing to unpack .../392-python3-slepc4py-64-real3.20_3.20.2-1ubuntu2_arm64.deb ... 205s Unpacking python3-slepc4py-64-real3.20 (3.20.2-1ubuntu2) ... 205s Selecting previously unselected package python3-slepc4py-64-real. 205s Preparing to unpack .../393-python3-slepc4py-64-real_3.20.2-1ubuntu2_all.deb ... 205s Unpacking python3-slepc4py-64-real (3.20.2-1ubuntu2) ... 205s Selecting previously unselected package python3-pkgconfig. 205s Preparing to unpack .../394-python3-pkgconfig_1.5.5-2_all.deb ... 205s Unpacking python3-pkgconfig (1.5.5-2) ... 205s Selecting previously unselected package python3-pybind11. 205s Preparing to unpack .../395-python3-pybind11_2.13.6-1_all.deb ... 205s Unpacking python3-pybind11 (2.13.6-1) ... 205s Selecting previously unselected package python3-dolfin64-real. 205s Preparing to unpack .../396-python3-dolfin64-real_2019.2.0~legacy20240219.1c52e83-10ubuntu1_arm64.deb ... 205s Unpacking python3-dolfin64-real (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 205s Selecting previously unselected package python3-imagesize. 205s Preparing to unpack .../397-python3-imagesize_1.4.1-1_all.deb ... 205s Unpacking python3-imagesize (1.4.1-1) ... 205s Selecting previously unselected package python3-packaging. 205s Preparing to unpack .../398-python3-packaging_24.1-1_all.deb ... 205s Unpacking python3-packaging (24.1-1) ... 205s Selecting previously unselected package python3-ply. 205s Preparing to unpack .../399-python3-ply_3.11-7_all.deb ... 205s Unpacking python3-ply (3.11-7) ... 205s Selecting previously unselected package python3-pusimp. 205s Preparing to unpack .../400-python3-pusimp_0.1.1-1_all.deb ... 205s Unpacking python3-pusimp (0.1.1-1) ... 205s Selecting previously unselected package python3-six. 205s Preparing to unpack .../401-python3-six_1.16.0-7_all.deb ... 205s Unpacking python3-six (1.16.0-7) ... 205s Selecting previously unselected package python3-snowballstemmer. 206s Preparing to unpack .../402-python3-snowballstemmer_2.2.0-4build1_all.deb ... 206s Unpacking python3-snowballstemmer (2.2.0-4build1) ... 206s Selecting previously unselected package python3-alabaster. 206s Preparing to unpack .../403-python3-alabaster_0.7.16-0.1_all.deb ... 206s Unpacking python3-alabaster (0.7.16-0.1) ... 206s Selecting previously unselected package python3-sphinx. 206s Preparing to unpack .../404-python3-sphinx_7.4.7-4_all.deb ... 206s Unpacking python3-sphinx (7.4.7-4) ... 206s Selecting previously unselected package sphinx-rtd-theme-common. 206s Preparing to unpack .../405-sphinx-rtd-theme-common_3.0.1+dfsg-1_all.deb ... 206s Unpacking sphinx-rtd-theme-common (3.0.1+dfsg-1) ... 206s Selecting previously unselected package python3-sphinxcontrib.jquery. 206s Preparing to unpack .../406-python3-sphinxcontrib.jquery_4.1-5_all.deb ... 206s Unpacking python3-sphinxcontrib.jquery (4.1-5) ... 206s Selecting previously unselected package python3-sphinx-rtd-theme. 206s Preparing to unpack .../407-python3-sphinx-rtd-theme_3.0.1+dfsg-1_all.deb ... 206s Unpacking python3-sphinx-rtd-theme (3.0.1+dfsg-1) ... 206s Selecting previously unselected package slepc64-dev. 206s Preparing to unpack .../408-slepc64-dev_3.20.2+dfsg1-2build1_arm64.deb ... 206s Unpacking slepc64-dev (3.20.2+dfsg1-2build1) ... 206s Selecting previously unselected package python3-petsc4py. 206s Preparing to unpack .../409-python3-petsc4py_3.20.5-4ubuntu1_all.deb ... 206s Unpacking python3-petsc4py (3.20.5-4ubuntu1) ... 206s Selecting previously unselected package python3-slepc4py. 206s Preparing to unpack .../410-python3-slepc4py_3.20.2-1ubuntu2_all.deb ... 206s Unpacking python3-slepc4py (3.20.2-1ubuntu2) ... 206s Selecting previously unselected package python3-dolfin. 206s Preparing to unpack .../411-python3-dolfin_2019.2.0~legacy20240219.1c52e83-10ubuntu1_arm64.deb ... 206s Unpacking python3-dolfin (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 206s Selecting previously unselected package dolfin-doc. 206s Preparing to unpack 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Preparing to unpack .../417-1-autopkgtest-satdep.deb ... 207s Unpacking autopkgtest-satdep (0) ... 207s Setting up dh-python (6.20241024) ... 208s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 208s Setting up libgnutls-openssl27t64:arm64 (3.8.6-2ubuntu1) ... 208s Setting up libboost-program-options1.83.0:arm64 (1.83.0-3.2ubuntu2) ... 208s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 208s Setting up libxapian30:arm64 (1.4.25-1) ... 208s Setting up libsharpyuv0:arm64 (1.4.0-0.1) ... 208s Setting up libaom3:arm64 (3.11.0~rc1-1) ... 208s Setting up libpciaccess0:arm64 (0.17-3build1) ... 208s Setting up fonts-lato (2.015-1) ... 208s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 208s Setting up swig (4.2.1-1) ... 208s Setting up libzstd-dev:arm64 (1.5.6+dfsg-1) ... 208s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu2) ... 208s Setting up libxpm4:arm64 (1:3.5.17-1build2) ... 208s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 208s Setting up libboost-date-time1.83.0:arm64 (1.83.0-3.2ubuntu2) 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x11-common (1:7.7+23ubuntu3) ... 209s Setting up libibumad3:arm64 (52.0-2ubuntu1) ... 209s Setting up libdeflate0:arm64 (1.22-1) ... 209s Setting up libboost-thread1.83.0:arm64 (1.83.0-3.2ubuntu2) ... 209s Setting up m4 (1.4.19-4build1) ... 209s Setting up libevent-2.1-7t64:arm64 (2.1.12-stable-10) ... 209s Setting up libtrilinos-kokkos-13.2:arm64 (13.2.0-6) ... 209s Setting up libmetis5:arm64 (5.1.0.dfsg-7build3) ... 209s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 209s Setting up libibmad5:arm64 (52.0-2ubuntu1) ... 209s Setting up libldl3:arm64 (1:7.8.3+dfsg-2) ... 209s Setting up libboost-filesystem1.83.0:arm64 (1.83.0-3.2ubuntu2) ... 209s Setting up libdolfin-dev-common (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 209s Setting up libgomp1:arm64 (14.2.0-8ubuntu1) ... 209s Setting up libjs-modernizr (3.13.0-0.1) ... 209s Setting up libblis4-pthread:arm64 (0.9.0-1) ... 209s update-alternatives: using /usr/lib/aarch64-linux-gnu/blis-pthread/libblis.so.4 to provide /usr/lib/aarch64-linux-gnu/libblis.so.4 (libblis.so.4-aarch64-linux-gnu) in auto mode 209s update-alternatives: using /usr/lib/aarch64-linux-gnu/blis-pthread/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 209s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 209s Setting up libaec0:arm64 (1.1.3-1) ... 209s Setting up libsuperlu7:arm64 (7.0.0+dfsg1-2) ... 209s Setting up libpsl-dev:arm64 (0.21.2-1.1build1) ... 209s Setting up libc6-dbg:arm64 (2.40-1ubuntu3) ... 209s Setting up libnuma-dev:arm64 (2.0.18-1build1) ... 209s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 209s Setting up libboost-atomic1.83.0:arm64 (1.83.0-3.2ubuntu2) ... 209s Setting up python3-six (1.16.0-7) ... 209s Setting up libtrilinos-trilinosss-13.2:arm64 (13.2.0-6) ... 209s Setting up libpython3.13-minimal:arm64 (3.13.0-2) ... 209s Setting up libboost-serialization1.83.0:arm64 (1.83.0-3.2ubuntu2) ... 209s Setting up libbtf2:arm64 (1:7.8.3+dfsg-2) ... 209s Setting up libblis-pthread-dev:arm64 (0.9.0-1) ... 209s update-alternatives: using /usr/lib/aarch64-linux-gnu/blis-pthread/libblis.so to provide /usr/lib/aarch64-linux-gnu/libblis.so (libblis.so-aarch64-linux-gnu) in auto mode 209s update-alternatives: using /usr/lib/aarch64-linux-gnu/blis-pthread/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 209s Setting up python3-roman (4.2-1) ... 209s Setting up xtrans-dev (1.4.0-1) ... 209s Setting up autotools-dev (20220109.1) ... 209s Setting up libblas3:arm64 (3.12.0-3build2) ... 209s Setting up python3-packaging (24.1-1) ... 210s Setting up libunbound8:arm64 (1.20.0-1ubuntu2.1) ... 210s Setting up libpkgconf3:arm64 (1.8.1-4) ... 210s Setting up libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-2ubuntu7) ... 210s Setting up gcc-13-base:arm64 (13.3.0-6ubuntu2) ... 210s Setting up libmunge2:arm64 (0.5.15-4build1) ... 210s Setting up libllvm17t64:arm64 (1:17.0.6-18) ... 210s Setting up libexpat1-dev:arm64 (2.6.2-2) ... 210s Setting up libgnutls-dane0t64:arm64 (3.8.6-2ubuntu1) ... 210s Setting up libboost-chrono1.83.0t64:arm64 (1.83.0-3.2ubuntu2) ... 210s Setting up python3-snowballstemmer (2.2.0-4build1) ... 210s Setting up libboost-iostreams1.83.0:arm64 (1.83.0-3.2ubuntu2) ... 210s Setting up libpathplan4:arm64 (2.42.4-2build3) ... 210s Setting up libann0 (1.1.2+doc-9build1) ... 210s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 210s Setting up fonts-dejavu-mono (2.37-8) ... 210s Setting up libssl-dev:arm64 (3.3.1-2ubuntu2) ... 210s Setting up libhwloc15:arm64 (2.11.2-1) ... 210s Setting up libmpc3:arm64 (1.3.1-1build2) ... 210s Setting up autopoint (0.22.5-2) ... 210s Setting up libjsoncpp25:arm64 (1.9.5-6build1) ... 210s Setting up icu-devtools (74.2-1ubuntu4) ... 210s Setting up fonts-dejavu-core (2.37-8) ... 210s Setting up pkgconf-bin (1.8.1-4) ... 210s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ... 210s Setting up libltdl7:arm64 (2.4.7-7build1) ... 210s Setting up opencl-c-headers (3.0~2024.05.08-1) ... 210s Setting up libidn2-dev:arm64 (2.3.7-2build2) ... 210s Setting up libfftw3-double3:arm64 (3.3.10-1ubuntu4) ... 210s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ... 210s Setting up autoconf (2.72-3) ... 210s Setting up libevent-extra-2.1-7t64:arm64 (2.1.12-stable-10) ... 210s Setting up libwebp7:arm64 (1.4.0-0.1) ... 210s Setting up libmumps-headers-dev (5.6.2-2.1build3) ... 210s Setting up liblzma-dev:arm64 (5.6.2-2) ... 210s Setting up libubsan1:arm64 (14.2.0-8ubuntu1) ... 210s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 210s Setting up dwz (0.15-1build6) ... 210s Setting up libnl-3-dev:arm64 (3.7.0-0.3build2) ... 210s Setting up ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 210s Setting up libhwasan0:arm64 (14.2.0-8ubuntu1) ... 210s Setting up librhash0:arm64 (1.4.3-3build1) ... 210s Setting up libasan8:arm64 (14.2.0-8ubuntu1) ... 210s Setting up libjson-perl (4.10000-1) ... 210s Setting up openmpi-common (4.1.6-13.3ubuntu2) ... 210s Setting up debugedit (1:5.1-1) ... 210s Setting up libsuitesparseconfig7:arm64 (1:7.8.3+dfsg-2) ... 210s Setting up librdmacm1t64:arm64 (52.0-2ubuntu1) ... 210s Setting up python3.13-minimal (3.13.0-2) ... 211s Setting up libharfbuzz0b:arm64 (10.0.1-1) ... 211s Setting up libthai-data (0.1.29-2build1) ... 211s Setting up xorg-sgml-doctools (1:1.11-1.1) ... 211s Setting up libgts-0.7-5t64:arm64 (0.7.6+darcs121130-5.2build1) ... 211s Setting up sgml-base (1.31) ... 211s Setting up cmake-data (3.30.3-1) ... 211s Setting up libcdt5:arm64 (2.42.4-2build3) ... 211s Setting up libcgraph6:arm64 (2.42.4-2build3) ... 211s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 211s Setting up libboost-math1.83.0:arm64 (1.83.0-3.2ubuntu2) ... 211s Setting up libtsan2:arm64 (14.2.0-8ubuntu1) ... 211s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 211s Setting up python3-mpmath (1.3.0-1) ... 212s Setting up libisl23:arm64 (0.27-1) ... 212s Setting up libde265-0:arm64 (1.0.15-1build4) ... 212s Setting up libsuperlu-dev:arm64 (7.0.0+dfsg1-2) ... 212s Setting up valgrind (1:3.23.0-0ubuntu2) ... 212s Setting up libtasn1-6-dev:arm64 (4.19.0-3build1) ... 212s Setting up valgrind-mpi (1:3.23.0-0ubuntu2) ... 212s Setting up libpython3.13-stdlib:arm64 (3.13.0-2) ... 212s Setting up libicu-dev:arm64 (74.2-1ubuntu4) ... 212s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 212s Setting up sphinx-rtd-theme-common (3.0.1+dfsg-1) ... 212s Setting up libcc1-0:arm64 (14.2.0-8ubuntu1) ... 212s Setting up python3-pusimp (0.1.1-1) ... 213s Setting up libbrotli-dev:arm64 (1.1.0-2build2) ... 213s Setting up libtrilinos-trilinosss-dev:arm64 (13.2.0-6) ... 213s Setting up libfmt10:arm64 (10.1.1+ds1-4) ... 213s Setting up chrpath (0.18-1) ... 213s Setting up liblsan0:arm64 (14.2.0-8ubuntu1) ... 213s Setting up libp11-kit-dev:arm64 (0.25.5-2ubuntu1) ... 213s Setting up libblas-dev:arm64 (3.12.0-3build2) ... 213s Setting up libsz2:arm64 (1.1.3-1) ... 213s Setting up libitm1:arm64 (14.2.0-8ubuntu1) ... 213s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 213s Setting up python3-imagesize (1.4.1-1) ... 213s Setting up libdrm-amdgpu1:arm64 (2.4.123-1) ... 213s Setting up libblas64-3:arm64 (3.12.0-3build2) ... 213s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas64/libblas64.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas64.so.3 (libblas64.so.3-aarch64-linux-gnu) in auto mode 213s Setting up libpython3.13:arm64 (3.13.0-2) ... 213s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 213s Setting up automake (1:1.16.5-1.3ubuntu1) ... 213s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode 213s Setting up x11proto-dev (2024.1-1) ... 213s Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... 213s Setting up libfabric1:arm64 (1.17.0-3ubuntu1) ... 213s Setting up python3-sympy (1.13.3-1) ... 227s Setting up libice6:arm64 (2:1.1.1-1) ... 227s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu2) ... 227s Setting up liblapack3:arm64 (3.12.0-3build2) ... 227s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 227s Setting up gettext (0.22.5-2) ... 227s Setting up libarpack2t64:arm64 (3.9.1-1.1ubuntu1) ... 227s Setting up libfftw3-single3:arm64 (3.3.10-1ubuntu4) ... 227s Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-2ubuntu7) ... 227s Setting up libamd3:arm64 (1:7.8.3+dfsg-2) ... 227s Setting up libxau-dev:arm64 (1:1.0.11-1) ... 227s Setting up nettle-dev:arm64 (3.10-1) ... 227s Setting up cpp-13-aarch64-linux-gnu (13.3.0-6ubuntu2) ... 227s Setting up libcolamd3:arm64 (1:7.8.3+dfsg-2) ... 227s Setting up python3.13 (3.13.0-2) ... 229s Setting up libspex3:arm64 (1:7.8.3+dfsg-2) ... 229s Setting up libsuitesparse-mongoose3:arm64 (1:7.8.3+dfsg-2) ... 229s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 229s Setting up libopenblas64-0-pthread:arm64 (0.3.28+ds-3) ... 229s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas64-pthread/libblas64.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas64.so.3 (libblas64.so.3-aarch64-linux-gnu) in auto mode 229s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas64-pthread/liblapack64.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack64.so.3 (liblapack64.so.3-aarch64-linux-gnu) in auto mode 229s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas64-pthread/libopenblas64.so.0 to provide /usr/lib/aarch64-linux-gnu/libopenblas64.so.0 (libopenblas64.so.0-aarch64-linux-gnu) in auto mode 229s Setting up libaec-dev:arm64 (1.1.3-1) ... 229s Setting up libcxsparse4:arm64 (1:7.8.3+dfsg-2) ... 229s Setting up libfftw3-long3:arm64 (3.3.10-1ubuntu4) ... 229s Setting up python3-all (3.12.7-1) ... 229s Setting up libpython3.12-dev:arm64 (3.12.7-3) ... 229s Setting up libopenblas64-pthread-dev:arm64 (0.3.28+ds-3) ... 229s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas64-pthread/libblas64.so to provide /usr/lib/aarch64-linux-gnu/libblas64.so (libblas64.so-aarch64-linux-gnu) in auto mode 229s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas64-pthread/liblapack64.so to provide /usr/lib/aarch64-linux-gnu/liblapack64.so (liblapack64.so-aarch64-linux-gnu) in auto mode 229s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas64-pthread/libopenblas64.so to provide /usr/lib/aarch64-linux-gnu/libopenblas64.so (libopenblas64.so-aarch64-linux-gnu) in auto mode 229s Setting up liblapack64-3:arm64 (3.12.0-3build2) ... 229s Setting up libsuperlu6:arm64 (6.0.1+dfsg1-1build3) ... 229s Setting up libhwloc-plugins:arm64 (2.11.2-1) ... 229s Setting up libcamd3:arm64 (1:7.8.3+dfsg-2) ... 229s Setting up pkgconf:arm64 (1.8.1-4) ... 229s Setting up intltool-debian (0.35.0+20060710.6) ... 229s Setting up libnl-route-3-dev:arm64 (3.7.0-0.3build2) ... 229s Setting up libltdl-dev:arm64 (2.4.7-7build1) ... 229s Setting up libthai0:arm64 (0.1.29-2build1) ... 229s Setting up libxdmcp-dev:arm64 (1:1.1.3-0ubuntu6) ... 229s Setting up libxml2-dev:arm64 (2.12.7+dfsg-3) ... 229s Setting up doxygen (1.9.8+ds-2ubuntu2) ... 229s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 229s Setting up librbio4:arm64 (1:7.8.3+dfsg-2) ... 229s Setting up libraqm0:arm64 (0.10.1-1build1) ... 229s Setting up libpython3.13-dev:arm64 (3.13.0-2) ... 229s Setting up opencl-clhpp-headers (3.0~2024.05.08-1ubuntu1) ... 229s Setting up libevent-dev (2.1.12-stable-10) ... 229s Setting up liblapack-dev:arm64 (3.12.0-3build2) ... 229s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 229s Setting up libeigen3-dev (3.4.0-4build1) ... 229s Setting up python3.12-dev (3.12.7-3) ... 229s Setting up pkg-config:arm64 (1.8.1-4) ... 229s Setting up libpmix2t64:arm64 (5.0.3-2) ... 229s Setting up libssh2-1-dev:arm64 (1.11.1-1) ... 229s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 233s Setting up libjs-sphinxdoc (7.4.7-4) ... 233s Setting up ocl-icd-opencl-dev:arm64 (2.3.2-1build1) ... 233s Setting up libccolamd3:arm64 (1:7.8.3+dfsg-2) ... 233s Setting up dh-strip-nondeterminism (1.14.0-1) ... 233s Setting up libopenblas64-0:arm64 (0.3.28+ds-3) ... 233s Setting up libgvpr2:arm64 (2.42.4-2build3) ... 233s Setting up python3-ufl-legacy (1:2022.3.0-3) ... 233s Setting up libgcc-13-dev:arm64 (13.3.0-6ubuntu2) ... 233s Setting up cpp-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 233s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 233s Setting up xml-core (0.19) ... 234s Setting up cmake (3.30.3-1) ... 234s Setting up libhwloc-dev:arm64 (2.11.2-1) ... 234s Setting up libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... 234s Setting up python3-pkgconfig (1.5.5-2) ... 234s Setting up libgcc-14-dev:arm64 (14.2.0-8ubuntu1) ... 234s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 234s Setting up libgfortran-13-dev:arm64 (13.3.0-6ubuntu2) ... 234s Setting up libstdc++-14-dev:arm64 (14.2.0-8ubuntu1) ... 234s Setting up libsm6:arm64 (2:1.2.4-1) ... 234s Setting up libpmix-dev:arm64 (5.0.3-2) ... 234s Setting up libhsakmt1:arm64 (5.7.0-1build1) ... 234s Setting up libgfortran-14-dev:arm64 (14.2.0-8ubuntu1) ... 234s Setting up libgnutls28-dev:arm64 (3.8.6-2ubuntu1) ... 234s Setting up libnghttp2-dev:arm64 (1.64.0-1) ... 234s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 236s Regenerating fonts cache... done. 236s Setting up libcholmod5:arm64 (1:7.8.3+dfsg-2) ... 236s Setting up libboost1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 236s Setting up python3-fiat (2019.2.0~git20210419.7d418fa-5) ... 236s Setting up libarpack2-dev:arm64 (3.9.1-1.1ubuntu1) ... 236s Setting up libpython3-dev:arm64 (3.12.7-1) ... 236s Setting up libxcb1-dev:arm64 (1.17.0-2) ... 236s Setting up libopenblas64-dev:arm64 (0.3.28+ds-3) ... 236s Setting up libboost-chrono1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 236s Setting up cpp-13 (13.3.0-6ubuntu2) ... 236s Setting up libboost-math1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 236s Setting up libspqr4:arm64 (1:7.8.3+dfsg-2) ... 236s Setting up libboost-chrono-dev:arm64 (1.83.0.2ubuntu1) ... 236s Setting up libfftw3-bin (3.3.10-1ubuntu4) ... 236s Setting up python3.13-dev (3.13.0-2) ... 236s Setting up libboost-math-dev:arm64 (1.83.0.2ubuntu1) ... 236s Setting up po-debconf (1.0.21+nmu1) ... 236s Setting up libpango-1.0-0:arm64 (1.54.0+ds-3) ... 236s Setting up libboost-program-options1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 236s Setting up libboost-serialization1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 236s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 236s Setting up libx11-dev:arm64 (2:1.8.10-2) ... 236s Setting up gcc-13-aarch64-linux-gnu (13.3.0-6ubuntu2) ... 236s Setting up libibverbs-dev:arm64 (52.0-2ubuntu1) ... 236s Setting up pybind11-dev (2.13.6-1) ... 236s Setting up libcairo2:arm64 (1.18.2-2) ... 236s Setting up cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 236s Setting up libboost-timer1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 236s Setting up libboost-program-options-dev:arm64 (1.83.0.2ubuntu1) ... 236s Setting up libklu2:arm64 (1:7.8.3+dfsg-2) ... 236s Setting up libpython3-all-dev:arm64 (3.12.7-1) ... 236s Setting up libboost-date-time1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 236s Setting up sphinx-common (7.4.7-4) ... 236s Setting up python3-dev (3.12.7-1) ... 236s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ... 236s Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2build7) ... 236s Setting up gcc-13 (13.3.0-6ubuntu2) ... 236s Setting up libboost-regex1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 236s Setting up libboost-serialization-dev:arm64 (1.83.0.2ubuntu1) ... 236s Setting up libboost-atomic1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 236s Setting up cpp-14 (14.2.0-8ubuntu1) ... 236s Setting up libumfpack6:arm64 (1:7.8.3+dfsg-2) ... 236s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 236s Setting up cpp (4:14.1.0-2ubuntu1) ... 236s Setting up libboost-dev:arm64 (1.83.0.2ubuntu1) ... 236s Setting up gcc-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 236s Setting up libboost-system1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 236s Setting up libpangoft2-1.0-0:arm64 (1.54.0+ds-3) ... 236s Setting up libfftw3-dev:arm64 (3.3.10-1ubuntu4) ... 236s Setting up libboost-timer-dev:arm64 (1.83.0.2ubuntu1) ... 236s Setting up python3-pybind11 (2.13.6-1) ... 236s Setting up libpangocairo-1.0-0:arm64 (1.54.0+ds-3) ... 236s Setting up python3-all-dev (3.12.7-1) ... 236s Setting up libboost-thread1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 236s Setting up gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 236s Setting up libxmu6:arm64 (2:1.1.3-3build2) ... 236s Setting up g++-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 236s Setting up libtool (2.4.7-7build1) ... 236s Setting up libboost-iostreams1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 236s Setting up gfortran-13-aarch64-linux-gnu (13.3.0-6ubuntu2) ... 236s Setting up libboost-filesystem1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 236s Setting up libxaw7:arm64 (2:1.0.16-1) ... 236s Setting up libboost-iostreams-dev:arm64 (1.83.0.2ubuntu1) ... 236s Setting up python-petsc4py-doc (3.20.5-4ubuntu1) ... 236s Setting up libparu1:arm64 (1:7.8.3+dfsg-2) ... 236s Setting up gcc-14 (14.2.0-8ubuntu1) ... 236s Setting up dh-autoreconf (20) ... 236s Setting up libamdhip64-5 (5.7.1-5) ... 237s Setting up libcurl4-openssl-dev:arm64 (8.9.1-2ubuntu2) ... 237s Setting up gfortran-13 (13.3.0-6ubuntu2) ... 237s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 237s Setting up g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 237s Setting up gfortran-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 237s Setting up g++-14 (14.2.0-8ubuntu1) ... 237s Setting up gfortran-14 (14.2.0-8ubuntu1) ... 237s Setting up libboost-filesystem-dev:arm64 (1.83.0.2ubuntu1) ... 237s Setting up libboost-thread-dev:arm64 (1.83.0.2ubuntu1) ... 237s Setting up libucx0:arm64 (1.17.0+ds-3build1) ... 237s Setting up libsuitesparse-dev:arm64 (1:7.8.3+dfsg-2) ... 237s Setting up debhelper (13.20ubuntu1) ... 237s Setting up gcc (4:14.1.0-2ubuntu1) ... 237s Setting up libopenmpi3t64:arm64 (4.1.6-13.3ubuntu2) ... 237s Setting up g++ (4:14.1.0-2ubuntu1) ... 237s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 237s Setting up libparpack2t64:arm64 (3.9.1-1.1ubuntu1) ... 237s Setting up build-essential (12.10ubuntu1) ... 237s Setting up libboost-mpi1.83.0 (1.83.0-3.2ubuntu2) ... 237s Setting up openmpi-bin (4.1.6-13.3ubuntu2) ... 237s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 237s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 237s Setting up libptscotch-7.0:arm64 (7.0.5-1ubuntu1) ... 237s Setting up mpi-default-bin (1.17) ... 237s Setting up libcombblas2.0.0t64:arm64 (2.0.0-3.1build3) ... 237s Setting up libfftw3-mpi3:arm64 (3.3.10-1ubuntu4) ... 237s Setting up python3-mpi4py (3.1.6-9ubuntu1) ... 237s Setting up libtrilinos-zoltan-13.2:arm64 (13.2.0-6) ... 237s Setting up gfortran (4:14.1.0-2ubuntu1) ... 237s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 237s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 237s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 237s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 237s Setting up libhdf5-openmpi-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 237s Setting up libtrilinos-teuchos-13.2:arm64 (13.2.0-6) ... 237s Setting up libtrilinos-epetra-13.2:arm64 (13.2.0-6) ... 237s Setting up libtrilinos-zoltan-dev:arm64 (13.2.0-6) ... 237s Setting up libtrilinos-aztecoo-13.2:arm64 (13.2.0-6) ... 237s Setting up libhdf5-openmpi-fortran-102t64:arm64 (1.10.10+repack-4ubuntu3) ... 237s Setting up libhdf5-openmpi-cpp-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 237s Setting up libtrilinos-aztecoo-dev:arm64 (13.2.0-6) ... 237s Setting up libopenmpi-dev:arm64 (4.1.6-13.3ubuntu2) ... 237s update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode 237s Setting up libtrilinos-triutils-13.2:arm64 (13.2.0-6) ... 237s Setting up libscalapack-openmpi2.2:arm64 (2.2.1-3.1ubuntu2) ... 237s Setting up python3-dijitso (2019.2.0~git20190418.c92dcb0-4) ... 237s Setting up libsuperlu-dist8:arm64 (8.2.1+dfsg1-2) ... 237s Setting up python3-ffc (2019.2.0~legacy20230509.35df986-3) ... 238s Setting up libfftw3-mpi-dev:arm64 (3.3.10-1ubuntu4) ... 238s Setting up libhdf5-openmpi-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 238s Setting up libsuperlu-dist-dev:arm64 (8.2.1+dfsg1-2) ... 238s Setting up libhdf5-openmpi-hl-fortran-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 238s Setting up libmumps-5.6t64:arm64 (5.6.2-2.1build3) ... 238s Setting up libhypre-2.31.0:arm64 (2.31.0-1exp2) ... 238s Setting up libhypre64m-2.31.0:arm64 (2.31.0-1exp2) ... 238s Setting up libtrilinos-epetraext-13.2:arm64 (13.2.0-6) ... 238s Setting up libscalapack-openmpi-dev:arm64 (2.2.1-3.1ubuntu2) ... 238s Setting up libtrilinos-galeri-13.2:arm64 (13.2.0-6) ... 238s Setting up mpi-default-dev (1.17) ... 238s Setting up libhdf5-openmpi-hl-cpp-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 238s Setting up libmumps-64pord-5.6t64:arm64 (5.6.2-2.1build3) ... 238s Setting up libtrilinos-amesos-13.2:arm64 (13.2.0-6) ... 238s Setting up libhypre64m-dev:arm64 (2.31.0-1exp2) ... 238s Setting up libscalapack-mpi-dev:arm64 (2.2.1-3.1ubuntu2) ... 238s Setting up libhdf5-openmpi-dev (1.10.10+repack-4ubuntu3) ... 238s update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode 238s update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 238s update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links 238s update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-mpi.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 238s Setting up libmumps64-dev:arm64 (5.6.2-2.1build3) ... 238s Setting up libmumps-dev:arm64 (5.6.2-2.1build3) ... 238s Setting up libscotch-dev (7.0.5-1ubuntu1) ... 238s Setting up libparpack2-dev:arm64 (3.9.1-1.1ubuntu1) ... 238s Setting up libhypre-dev:arm64 (2.31.0-1exp2) ... 238s Setting up libptscotch-dev (7.0.5-1ubuntu1) ... 238s Setting up libpetsc64-real3.20:arm64 (3.20.6+dfsg1-3ubuntu3) ... 238s update-alternatives: using /usr/lib/aarch64-linux-gnu/libpetsc64_real.so.3.20.6 to provide /usr/lib/aarch64-linux-gnu/libpetsc64.so.3.20 (libpetsc64.so.3.20) in auto mode 238s Setting up libboost-mpi1.83-dev (1.83.0-3.2ubuntu2) ... 238s Setting up libboost-mpi-dev (1.83.0.2ubuntu1) ... 238s Setting up python3-petsc4py-64-real3.20 (3.20.5-4ubuntu1) ... 238s Setting up libtrilinos-ifpack-13.2:arm64 (13.2.0-6) ... 238s Setting up libhdf5-mpi-dev (1.10.10+repack-4ubuntu3) ... 238s Setting up libslepc64-real3.20 (3.20.2+dfsg1-2build1) ... 238s update-alternatives: using /usr/lib/aarch64-linux-gnu/libslepc64_real.so.3.20.2 to provide /usr/lib/aarch64-linux-gnu/libslepc64.so.3.20 (libslepc64.so.3.20) in auto mode 238s Setting up python3-petsc4py (3.20.5-4ubuntu1) ... 238s Setting up libtrilinos-ml-13.2:arm64 (13.2.0-6) ... 238s Setting up libpetsc3.20-dev-common (3.20.6+dfsg1-3ubuntu3) ... 238s /usr/share/petsc/3.20/lib/petsc/bin/petsc_tas_analysis.py:792: SyntaxWarning: invalid escape sequence '\l' 238s axMeshConv.set(xlabel='Problem Size $\log N$', 238s /usr/share/petsc/3.20/lib/petsc/bin/petsc_tas_analysis.py:793: SyntaxWarning: invalid escape sequence '\l' 238s ylabel='Error $\log |x - x^*|$', title='Mesh Convergence') 238s /usr/share/petsc/3.20/lib/petsc/bin/petsclogformat.py:253: SyntaxWarning: invalid escape sequence '\d' 238s print("\documentclass{article}") 238s /usr/share/petsc/3.20/lib/petsc/bin/petsclogformat.py:256: SyntaxWarning: invalid escape sequence '\c' 238s print("\centering") 238s /usr/share/petsc/3.20/lib/petsc/bin/petsclogformat.py:259: SyntaxWarning: invalid escape sequence '\m' 238s print(" & & \multicolumn{4}{c}{--------------- Percent of -------------} & \\\\") 238s /usr/share/petsc/3.20/lib/petsc/bin/petsclogformat.py:261: SyntaxWarning: invalid escape sequence '\h' 238s print("\hline") 238s /usr/share/petsc/3.20/lib/petsc/bin/petsclogformat.py:321: SyntaxWarning: invalid escape sequence '\e' 238s print("\end{tabular}") 238s /usr/share/petsc/3.20/lib/petsc/bin/petsclogformat.py:322: SyntaxWarning: invalid escape sequence '\e' 238s print("\end{table}") 238s /usr/share/petsc/3.20/lib/petsc/bin/petsclogformat.py:323: SyntaxWarning: invalid escape sequence '\e' 238s print("\end{document}") 238s Setting up libtrilinos-ml-dev:arm64 (13.2.0-6) ... 238s Setting up libpetsc64-real3.20-dev:arm64 (3.20.6+dfsg1-3ubuntu3) ... 238s update-alternatives: using /usr/lib/petscdir/petsc64-3.20/aarch64-linux-gnu-real to provide /usr/lib/petsc64 (petsc64) in auto mode 238s update-alternatives: using /usr/lib/aarch64-linux-gnu/libpetsc64_real.so.3.20.6 to provide /usr/lib/aarch64-linux-gnu/libpetsc64_real.so (libpetsc64_real.so) in auto mode 238s update-alternatives: using /usr/lib/petscdir/petsc64-3.20/aarch64-linux-gnu-real to provide /usr/lib/petscdir/64-3.20 (petsc64-3.20) in auto mode 238s Setting up libpetsc-real3.20:arm64 (3.20.6+dfsg1-3ubuntu3) ... 238s update-alternatives: using /usr/lib/aarch64-linux-gnu/libpetsc_real.so.3.20.6 to provide /usr/lib/aarch64-linux-gnu/libpetsc.so.3.20 (libpetsc.so.3.20) in auto mode 238s Setting up python3-petsc4py-64-real (3.20.5-4ubuntu1) ... 238s Setting up python3-slepc4py-64-real3.20 (3.20.2-1ubuntu2) ... 238s Setting up libdolfin64-2019.2t64:arm64 (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 238s Setting up libslepc64-real3.20-dev (3.20.2+dfsg1-2build1) ... 238s update-alternatives: using /usr/lib/slepcdir/slepc64-3.20/aarch64-linux-gnu-real to provide /usr/lib/slepc64 (slepc64) in auto mode 238s update-alternatives: using /usr/lib/aarch64-linux-gnu/libslepc64_real.so.3.20.2 to provide /usr/lib/aarch64-linux-gnu/libslepc64_real.so (libslepc64_real.so) in auto mode 238s update-alternatives: using /usr/lib/slepcdir/slepc64-3.20/aarch64-linux-gnu-real to provide /usr/lib/slepcdir/64bit-3.20 (slepc64-3.20) in auto mode 238s Setting up python3-slepc4py (3.20.2-1ubuntu2) ... 238s Setting up python3-slepc4py-64-real (3.20.2-1ubuntu2) ... 238s Setting up libslepc-real3.20 (3.20.2+dfsg1-2build1) ... 238s update-alternatives: using /usr/lib/aarch64-linux-gnu/libslepc_real.so.3.20.2 to provide /usr/lib/aarch64-linux-gnu/libslepc.so.3.20 (libslepc.so.3.20) in auto mode 238s Setting up libpetsc64-real-dev (3.20.6+dfsg1-3ubuntu3) ... 238s Setting up petsc64-dev (3.20.6+dfsg1-3ubuntu3) ... 238s Setting up slepc64-dev (3.20.2+dfsg1-2build1) ... 238s Setting up python3-petsc4py-real3.20 (3.20.5-4ubuntu1) ... 238s Setting up libdolfin2019.2t64:arm64 (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 238s Setting up libpetsc-real3.20-dev:arm64 (3.20.6+dfsg1-3ubuntu3) ... 238s update-alternatives: error: no alternatives for petsc 238s update-alternatives: using /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real to provide /usr/lib/petsc (petsc) in auto mode 238s update-alternatives: using /usr/lib/aarch64-linux-gnu/libpetsc_real.so.3.20.6 to provide /usr/lib/aarch64-linux-gnu/libpetsc_real.so (libpetsc_real.so) in auto mode 238s update-alternatives: using /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real to provide /usr/lib/petscdir/3.20 (petsc3.20) in auto mode 238s Setting up python3-slepc4py-real3.20 (3.20.2-1ubuntu2) ... 238s Setting up libslepc-real3.20-dev (3.20.2+dfsg1-2build1) ... 238s update-alternatives: error: no alternatives for slepc 238s update-alternatives: using /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real to provide /usr/lib/slepc (slepc) in auto mode 238s update-alternatives: using /usr/lib/aarch64-linux-gnu/libslepc_real.so.3.20.2 to provide /usr/lib/aarch64-linux-gnu/libslepc_real.so (libslepc_real.so) in auto mode 238s update-alternatives: using /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real to provide /usr/lib/slepcdir/3.20 (slepc3.20) in auto mode 238s Setting up slepc-dev (3.20.2+dfsg1-2build1) ... 238s Setting up libpetsc-real-dev (3.20.6+dfsg1-3ubuntu3) ... 238s Setting up python3-slepc4py-real (3.20.2-1ubuntu2) ... 238s Setting up libdolfin-dev:arm64 (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 238s Setting up python3-petsc4py-real (3.20.5-4ubuntu1) ... 238s Setting up libdolfin64-dev:arm64 (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 238s Setting up petsc-dev (3.20.6+dfsg1-3ubuntu3) ... 238s Setting up python3-dolfin64-real (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 238s Setting up python3-dolfin-real (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 238s Setting up python3-dolfin (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 239s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:509: SyntaxWarning: invalid escape sequence '\ ' 239s _error("Missing data, unable to convert \n\ Did you use version 2.0 of the gmsh file format?") 239s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:865: SyntaxWarning: invalid escape sequence '\s' 239s x = list(map(float, re.split("[\s,]+", m.group(1)))) 239s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:1187: SyntaxWarning: invalid escape sequence '\s' 239s dim = int(re.match(".*\s=\s(\d+)\s;",line).group(1)) 239s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:1189: SyntaxWarning: invalid escape sequence '\s' 239s num_vertices = int(re.match(".*\s=\s(\d+)\s;",line).group(1)) 239s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:1191: SyntaxWarning: invalid escape sequence '\s' 239s num_cells = int(re.match(".*\s=\s(\d+)\s;",line).group(1)) 239s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:509: SyntaxWarning: invalid escape sequence '\ ' 239s _error("Missing data, unable to convert \n\ Did you use version 2.0 of the gmsh file format?") 239s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:865: SyntaxWarning: invalid escape sequence '\s' 239s x = list(map(float, re.split("[\s,]+", m.group(1)))) 239s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:1187: SyntaxWarning: invalid escape sequence '\s' 239s dim = int(re.match(".*\s=\s(\d+)\s;",line).group(1)) 239s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:1189: SyntaxWarning: invalid escape sequence '\s' 239s num_vertices = int(re.match(".*\s=\s(\d+)\s;",line).group(1)) 239s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:1191: SyntaxWarning: invalid escape sequence '\s' 239s num_cells = int(re.match(".*\s=\s(\d+)\s;",line).group(1)) 239s Setting up dolfin-doc (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 239s Setting up dolfin-bin (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 239s Setting up libheif-plugin-aomdec:arm64 (1.18.1-2) ... 239s Setting up libheif-plugin-libde265:arm64 (1.18.1-2) ... 239s Setting up libheif1:arm64 (1.18.1-2) ... 239s Setting up libgd3:arm64 (2.3.3-12ubuntu3) ... 239s Setting up libgvc6 (2.42.4-2build3) ... 239s Setting up graphviz (2.42.4-2build3) ... 239s Processing triggers for libc-bin (2.40-1ubuntu3) ... 239s Processing triggers for systemd (256.5-2ubuntu4) ... 239s Processing triggers for man-db (2.12.1-3) ... 241s Processing triggers for install-info (7.1.1-1) ... 241s Processing triggers for sgml-base (1.31) ... 241s Setting up docutils-common (0.21.2+dfsg-2) ... 241s Processing triggers for sgml-base (1.31) ... 241s Setting up python3-docutils (0.21.2+dfsg-2) ... 242s Setting up python3-sphinx (7.4.7-4) ... 243s Setting up python3-sphinxcontrib.jquery (4.1-5) ... 244s Setting up python3-sphinx-rtd-theme (3.0.1+dfsg-1) ... 244s Setting up autopkgtest-satdep (0) ... 265s (Reading database ... 129832 files and directories currently installed.) 265s Removing autopkgtest-satdep (0) ... 266s autopkgtest [09:10:04]: test test-dolfin-cpp: [----------------------- 267s -- The C compiler identification is GNU 14.2.0 267s -- The CXX compiler identification is GNU 14.2.0 267s -- Detecting C compiler ABI info 267s -- Detecting C compiler ABI info - done 267s -- Check for working C compiler: /usr/bin/mpicc - skipped 267s -- Detecting C compile features 267s -- Detecting C compile features - done 267s -- Detecting CXX compiler ABI info 267s -- Detecting CXX compiler ABI info - done 267s -- Check for working CXX compiler: /usr/bin/c++ - skipped 267s -- Detecting CXX compile features 267s -- Detecting CXX compile features - done 267s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 267s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 267s --help-policy CMP0167" for policy details. Use the cmake_policy command to 267s set the policy and suppress this warning. 267s 267s Call Stack (most recent call first): 267s CMakeLists.txt:5 (include) 267s This warning is for project developers. Use -Wno-dev to suppress it. 267s 267s -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") 267s -- Checking for one of the modules 'craypetsc_real;petsc;PETSc' 267s -- Looking for sys/types.h 267s -- Looking for sys/types.h - found 267s -- Looking for stdint.h 268s -- Looking for stdint.h - found 268s -- Looking for stddef.h 268s -- Looking for stddef.h - found 268s -- Check size of PetscInt 268s -- Check size of PetscInt - done 268s -- Checking for one of the modules 'crayslepc_real;slepc;SLEPc' 268s CMake Warning (dev) at CMakeLists.txt:39 (find_package): 268s Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules 268s are removed. Run "cmake --help-policy CMP0148" for policy details. Use 268s the cmake_policy command to set the policy and suppress this warning. 268s 268s This warning is for project developers. Use -Wno-dev to suppress it. 268s 268s -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.12.7", minimum required is "3") 270s -- Found UFC: /usr/lib/python3/dist-packages/ffc/backends/ufc (Required is at least version "2019.2") 270s -- Generating form files in test directories. May take some time... 296s -- Configuring done (29.6s) 296s -- Generating done (0.0s) 296s -- Build files have been written to: /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-unittests 296s /usr/bin/cmake -S/tmp/autopkgtest.ShOyTP/build.fwM/src/test/unit/cpp -B/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-unittests --check-build-system CMakeFiles/Makefile.cmake 0 296s make -f CMakeFiles/Makefile2 unittests 296s make[1]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-unittests' 296s /usr/bin/cmake -S/tmp/autopkgtest.ShOyTP/build.fwM/src/test/unit/cpp -B/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-unittests --check-build-system CMakeFiles/Makefile.cmake 0 296s /usr/bin/cmake -E cmake_progress_start /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-unittests/CMakeFiles 16 296s make -f CMakeFiles/Makefile2 CMakeFiles/unittests.dir/all 296s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-unittests' 296s make -f CMakeFiles/unittests.dir/build.make CMakeFiles/unittests.dir/depend 296s make[3]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-unittests' 296s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-unittests && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/test/unit/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/test/unit/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-unittests /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-unittests /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-unittests/CMakeFiles/unittests.dir/DependInfo.cmake "--color=" 296s make[3]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-unittests' 296s make -f CMakeFiles/unittests.dir/build.make CMakeFiles/unittests.dir/build 296s make[3]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-unittests' 296s [ 12%] Building CXX object CMakeFiles/unittests.dir/main.cpp.o 296s [ 12%] Building CXX object CMakeFiles/unittests.dir/function/Expression.cpp.o 296s [ 18%] Building CXX object CMakeFiles/unittests.dir/common/SubSystemsManager.cpp.o 296s [ 25%] Building CXX object CMakeFiles/unittests.dir/geometry/ConvexTriangulation.cpp.o 296s /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -I/tmp/autopkgtest.ShOyTP/build.fwM/src/test/unit/cpp/catch -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -std=c++11 -MD -MT CMakeFiles/unittests.dir/main.cpp.o -MF CMakeFiles/unittests.dir/main.cpp.o.d -o CMakeFiles/unittests.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/test/unit/cpp/main.cpp 296s /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -I/tmp/autopkgtest.ShOyTP/build.fwM/src/test/unit/cpp/catch -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -std=c++11 -MD -MT CMakeFiles/unittests.dir/common/SubSystemsManager.cpp.o -MF CMakeFiles/unittests.dir/common/SubSystemsManager.cpp.o.d -o CMakeFiles/unittests.dir/common/SubSystemsManager.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/test/unit/cpp/common/SubSystemsManager.cpp 296s /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -I/tmp/autopkgtest.ShOyTP/build.fwM/src/test/unit/cpp/catch -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -std=c++11 -MD -MT CMakeFiles/unittests.dir/function/Expression.cpp.o -MF CMakeFiles/unittests.dir/function/Expression.cpp.o.d -o CMakeFiles/unittests.dir/function/Expression.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/test/unit/cpp/function/Expression.cpp 296s /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -I/tmp/autopkgtest.ShOyTP/build.fwM/src/test/unit/cpp/catch -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -std=c++11 -MD -MT CMakeFiles/unittests.dir/geometry/ConvexTriangulation.cpp.o -MF CMakeFiles/unittests.dir/geometry/ConvexTriangulation.cpp.o.d -o CMakeFiles/unittests.dir/geometry/ConvexTriangulation.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/test/unit/cpp/geometry/ConvexTriangulation.cpp 297s [ 31%] Building CXX object CMakeFiles/unittests.dir/geometry/IntersectionConstruction.cpp.o 297s /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -I/tmp/autopkgtest.ShOyTP/build.fwM/src/test/unit/cpp/catch -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -std=c++11 -MD -MT CMakeFiles/unittests.dir/geometry/IntersectionConstruction.cpp.o -MF CMakeFiles/unittests.dir/geometry/IntersectionConstruction.cpp.o.d -o CMakeFiles/unittests.dir/geometry/IntersectionConstruction.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/test/unit/cpp/geometry/IntersectionConstruction.cpp 298s [ 37%] Building CXX object CMakeFiles/unittests.dir/io/XMLMeshData.cpp.o 298s /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -I/tmp/autopkgtest.ShOyTP/build.fwM/src/test/unit/cpp/catch -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -std=c++11 -MD -MT CMakeFiles/unittests.dir/io/XMLMeshData.cpp.o -MF CMakeFiles/unittests.dir/io/XMLMeshData.cpp.o.d -o CMakeFiles/unittests.dir/io/XMLMeshData.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/test/unit/cpp/io/XMLMeshData.cpp 301s [ 43%] Building CXX object CMakeFiles/unittests.dir/io/XMLMeshValueCollection.cpp.o 301s /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -I/tmp/autopkgtest.ShOyTP/build.fwM/src/test/unit/cpp/catch -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -std=c++11 -MD -MT CMakeFiles/unittests.dir/io/XMLMeshValueCollection.cpp.o -MF CMakeFiles/unittests.dir/io/XMLMeshValueCollection.cpp.o.d -o CMakeFiles/unittests.dir/io/XMLMeshValueCollection.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/test/unit/cpp/io/XMLMeshValueCollection.cpp 302s [ 50%] Building CXX object CMakeFiles/unittests.dir/la/LinearOperator.cpp.o 302s /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -I/tmp/autopkgtest.ShOyTP/build.fwM/src/test/unit/cpp/catch -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem 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Use the cmake_policy command to 323s set the policy and suppress this warning. 323s 323s Call Stack (most recent call first): 323s documented/bcs/cpp/CMakeLists.txt:18 (include) 323s This warning is for project developers. Use -Wno-dev to suppress it. 323s 324s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 324s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 324s --help-policy CMP0167" for policy details. Use the cmake_policy command to 324s set the policy and suppress this warning. 324s 324s Call Stack (most recent call first): 324s documented/biharmonic/cpp/CMakeLists.txt:18 (include) 324s This warning is for project developers. Use -Wno-dev to suppress it. 324s 324s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 324s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 324s --help-policy CMP0167" for policy details. Use the cmake_policy command to 324s set the policy and suppress this warning. 324s 324s Call Stack (most recent call first): 324s documented/built-in-meshes/cpp/CMakeLists.txt:18 (include) 324s This warning is for project developers. Use -Wno-dev to suppress it. 324s 324s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 324s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 324s --help-policy CMP0167" for policy details. Use the cmake_policy command to 324s set the policy and suppress this warning. 324s 324s Call Stack (most recent call first): 324s documented/cahn-hilliard/cpp/CMakeLists.txt:18 (include) 324s This warning is for project developers. Use -Wno-dev to suppress it. 324s 324s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 324s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 324s --help-policy CMP0167" for policy details. Use the cmake_policy command to 324s set the policy and suppress this warning. 324s 324s Call Stack (most recent call first): 324s documented/eigenvalue/cpp/CMakeLists.txt:18 (include) 324s This warning is for project developers. Use -Wno-dev to suppress it. 324s 324s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 324s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 324s --help-policy CMP0167" for policy details. Use the cmake_policy command to 324s set the policy and suppress this warning. 324s 324s Call Stack (most recent call first): 324s documented/hyperelasticity/cpp/CMakeLists.txt:18 (include) 324s This warning is for project developers. Use -Wno-dev to suppress it. 324s 324s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 324s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 324s --help-policy CMP0167" for policy details. Use the cmake_policy command to 324s set the policy and suppress this warning. 324s 324s Call Stack (most recent call first): 324s documented/mixed-poisson/cpp/CMakeLists.txt:18 (include) 324s This warning is for project developers. Use -Wno-dev to suppress it. 324s 324s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 324s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 324s --help-policy CMP0167" for policy details. Use the cmake_policy command to 324s set the policy and suppress this warning. 324s 324s Call Stack (most recent call first): 324s documented/navier-stokes/cpp/CMakeLists.txt:18 (include) 324s This warning is for project developers. Use -Wno-dev to suppress it. 324s 324s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 324s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 324s --help-policy CMP0167" for policy details. Use the cmake_policy command to 324s set the policy and suppress this warning. 324s 324s Call Stack (most recent call first): 324s documented/neumann-poisson/cpp/CMakeLists.txt:18 (include) 324s This warning is for project developers. Use -Wno-dev to suppress it. 324s 324s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 324s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 324s --help-policy CMP0167" for policy details. Use the cmake_policy command to 324s set the policy and suppress this warning. 324s 324s Call Stack (most recent call first): 324s documented/nonlinear-poisson/cpp/CMakeLists.txt:18 (include) 324s This warning is for project developers. Use -Wno-dev to suppress it. 324s 324s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 324s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 324s --help-policy CMP0167" for policy details. Use the cmake_policy command to 324s set the policy and suppress this warning. 324s 324s Call Stack (most recent call first): 324s documented/nonmatching-interpolation/cpp/CMakeLists.txt:18 (include) 324s This warning is for project developers. Use -Wno-dev to suppress it. 324s 324s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 324s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 324s --help-policy CMP0167" for policy details. Use the cmake_policy command to 324s set the policy and suppress this warning. 324s 324s Call Stack (most recent call first): 324s documented/periodic/cpp/CMakeLists.txt:18 (include) 324s This warning is for project developers. Use -Wno-dev to suppress it. 324s 324s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 324s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 324s --help-policy CMP0167" for policy details. Use the cmake_policy command to 324s set the policy and suppress this warning. 324s 324s Call Stack (most recent call first): 324s documented/poisson/cpp/CMakeLists.txt:18 (include) 324s This warning is for project developers. Use -Wno-dev to suppress it. 324s 324s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 324s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 324s --help-policy CMP0167" for policy details. Use the cmake_policy command to 324s set the policy and suppress this warning. 324s 324s Call Stack (most recent call first): 324s documented/singular-poisson/cpp/CMakeLists.txt:18 (include) 324s This warning is for project developers. Use -Wno-dev to suppress it. 324s 324s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 324s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 324s --help-policy CMP0167" for policy details. Use the cmake_policy command to 324s set the policy and suppress this warning. 324s 324s Call Stack (most recent call first): 324s documented/stokes-iterative/cpp/CMakeLists.txt:18 (include) 324s This warning is for project developers. Use -Wno-dev to suppress it. 324s 324s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 324s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 324s --help-policy CMP0167" for policy details. Use the cmake_policy command to 324s set the policy and suppress this warning. 324s 324s Call Stack (most recent call first): 324s documented/stokes-taylor-hood/cpp/CMakeLists.txt:18 (include) 324s This warning is for project developers. Use -Wno-dev to suppress it. 324s 324s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 324s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 324s --help-policy CMP0167" for policy details. Use the cmake_policy command to 324s set the policy and suppress this warning. 324s 324s Call Stack (most recent call first): 324s documented/subdomains/cpp/CMakeLists.txt:18 (include) 324s This warning is for project developers. Use -Wno-dev to suppress it. 324s 324s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 324s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 324s --help-policy CMP0167" for policy details. Use the cmake_policy command to 324s set the policy and suppress this warning. 324s 324s Call Stack (most recent call first): 324s undocumented/advection-diffusion/cpp/CMakeLists.txt:18 (include) 324s This warning is for project developers. Use -Wno-dev to suppress it. 324s 324s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 324s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 324s --help-policy CMP0167" for policy details. Use the cmake_policy command to 324s set the policy and suppress this warning. 324s 324s Call Stack (most recent call first): 324s undocumented/ale/cpp/CMakeLists.txt:18 (include) 324s This warning is for project developers. Use -Wno-dev to suppress it. 324s 324s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 324s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 324s --help-policy CMP0167" for policy details. Use the cmake_policy command to 324s set the policy and suppress this warning. 324s 324s Call Stack (most recent call first): 324s undocumented/auto-adaptive-navier-stokes/cpp/CMakeLists.txt:18 (include) 324s This warning is for project developers. Use -Wno-dev to suppress it. 324s 325s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 325s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 325s --help-policy CMP0167" for policy details. Use the cmake_policy command to 325s set the policy and suppress this warning. 325s 325s Call Stack (most recent call first): 325s undocumented/block-matrix/cpp/CMakeLists.txt:18 (include) 325s This warning is for project developers. Use -Wno-dev to suppress it. 325s 325s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 325s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 325s --help-policy CMP0167" for policy details. Use the cmake_policy command to 325s set the policy and suppress this warning. 325s 325s Call Stack (most recent call first): 325s undocumented/conditional/cpp/CMakeLists.txt:18 (include) 325s This warning is for project developers. Use -Wno-dev to suppress it. 325s 325s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 325s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 325s --help-policy CMP0167" for policy details. Use the cmake_policy command to 325s set the policy and suppress this warning. 325s 325s Call Stack (most recent call first): 325s undocumented/contact-vi-snes/cpp/CMakeLists.txt:18 (include) 325s This warning is for project developers. Use -Wno-dev to suppress it. 325s 325s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 325s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 325s --help-policy CMP0167" for policy details. Use the cmake_policy command to 325s set the policy and suppress this warning. 325s 325s Call Stack (most recent call first): 325s undocumented/contact-vi-tao/cpp/CMakeLists.txt:18 (include) 325s This warning is for project developers. Use -Wno-dev to suppress it. 325s 325s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 325s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 325s --help-policy CMP0167" for policy details. Use the cmake_policy command to 325s set the policy and suppress this warning. 325s 325s Call Stack (most recent call first): 325s undocumented/curl-curl/cpp/CMakeLists.txt:18 (include) 325s This warning is for project developers. Use -Wno-dev to suppress it. 325s 325s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 325s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 325s --help-policy CMP0167" for policy details. Use the cmake_policy command to 325s set the policy and suppress this warning. 325s 325s Call Stack (most recent call first): 325s undocumented/dg-advection-diffusion/cpp/CMakeLists.txt:18 (include) 325s This warning is for project developers. Use -Wno-dev to suppress it. 325s 325s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 325s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 325s --help-policy CMP0167" for policy details. Use the cmake_policy command to 325s set the policy and suppress this warning. 325s 325s Call Stack (most recent call first): 325s undocumented/dg-poisson/cpp/CMakeLists.txt:18 (include) 325s This warning is for project developers. Use -Wno-dev to suppress it. 325s 325s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 325s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 325s --help-policy CMP0167" for policy details. Use the cmake_policy command to 325s set the policy and suppress this warning. 325s 325s Call Stack (most recent call first): 325s undocumented/elasticity/cpp/CMakeLists.txt:18 (include) 325s This warning is for project developers. Use -Wno-dev to suppress it. 325s 325s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 325s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 325s --help-policy CMP0167" for policy details. Use the cmake_policy command to 325s set the policy and suppress this warning. 325s 325s Call Stack (most recent call first): 325s undocumented/elastodynamics/cpp/CMakeLists.txt:18 (include) 325s This warning is for project developers. Use -Wno-dev to suppress it. 325s 325s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 325s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 325s --help-policy CMP0167" for policy details. Use the cmake_policy command to 325s set the policy and suppress this warning. 325s 325s Call Stack (most recent call first): 325s undocumented/eval/cpp/CMakeLists.txt:18 (include) 325s This warning is for project developers. Use -Wno-dev to suppress it. 325s 325s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 325s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 325s --help-policy CMP0167" for policy details. Use the cmake_policy command to 325s set the policy and suppress this warning. 325s 325s Call Stack (most recent call first): 325s undocumented/extrapolation/cpp/CMakeLists.txt:18 (include) 325s This warning is for project developers. Use -Wno-dev to suppress it. 325s 325s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 325s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 325s --help-policy CMP0167" for policy details. Use the cmake_policy command to 325s set the policy and suppress this warning. 325s 325s Call Stack (most recent call first): 325s undocumented/functional/cpp/CMakeLists.txt:18 (include) 325s This warning is for project developers. Use -Wno-dev to suppress it. 325s 325s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 325s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 325s --help-policy CMP0167" for policy details. Use the cmake_policy command to 325s set the policy and suppress this warning. 325s 325s Call Stack (most recent call first): 325s undocumented/gmg-poisson/cpp/CMakeLists.txt:18 (include) 325s This warning is for project developers. Use -Wno-dev to suppress it. 325s 325s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 325s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 325s --help-policy CMP0167" for policy details. Use the cmake_policy command to 325s set the policy and suppress this warning. 325s 325s Call Stack (most recent call first): 325s undocumented/lift-drag/cpp/CMakeLists.txt:18 (include) 325s This warning is for project developers. Use -Wno-dev to suppress it. 325s 326s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 326s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 326s --help-policy CMP0167" for policy details. Use the cmake_policy command to 326s set the policy and suppress this warning. 326s 326s Call Stack (most recent call first): 326s undocumented/mesh-quality/cpp/CMakeLists.txt:18 (include) 326s This warning is for project developers. Use -Wno-dev to suppress it. 326s 326s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 326s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 326s --help-policy CMP0167" for policy details. Use the cmake_policy command to 326s set the policy and suppress this warning. 326s 326s Call Stack (most recent call first): 326s undocumented/meshfunction-refinement/cpp/CMakeLists.txt:18 (include) 326s This warning is for project developers. Use -Wno-dev to suppress it. 326s 326s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 326s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 326s --help-policy CMP0167" for policy details. Use the cmake_policy command to 326s set the policy and suppress this warning. 326s 326s Call Stack (most recent call first): 326s undocumented/multimesh-poisson/cpp/CMakeLists.txt:18 (include) 326s This warning is for project developers. Use -Wno-dev to suppress it. 326s 326s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 326s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 326s --help-policy CMP0167" for policy details. Use the cmake_policy command to 326s set the policy and suppress this warning. 326s 326s Call Stack (most recent call first): 326s undocumented/multimesh-stokes/cpp/CMakeLists.txt:18 (include) 326s This warning is for project developers. Use -Wno-dev to suppress it. 326s 326s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 326s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 326s --help-policy CMP0167" for policy details. Use the cmake_policy command to 326s set the policy and suppress this warning. 326s 326s Call Stack (most recent call first): 326s undocumented/nonmatching-projection/cpp/CMakeLists.txt:18 (include) 326s This warning is for project developers. Use -Wno-dev to suppress it. 326s 326s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 326s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 326s --help-policy CMP0167" for policy details. Use the cmake_policy command to 326s set the policy and suppress this warning. 326s 326s Call Stack (most recent call first): 326s undocumented/parallel-refinement/cpp/CMakeLists.txt:18 (include) 326s This warning is for project developers. Use -Wno-dev to suppress it. 326s 326s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 326s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 326s --help-policy CMP0167" for policy details. Use the cmake_policy command to 326s set the policy and suppress this warning. 326s 326s Call Stack (most recent call first): 326s undocumented/parameters/cpp/CMakeLists.txt:18 (include) 326s This warning is for project developers. Use -Wno-dev to suppress it. 326s 326s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 326s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 326s --help-policy CMP0167" for policy details. Use the cmake_policy command to 326s set the policy and suppress this warning. 326s 326s Call Stack (most recent call first): 326s undocumented/poisson1D/cpp/CMakeLists.txt:18 (include) 326s This warning is for project developers. Use -Wno-dev to suppress it. 326s 326s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 326s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 326s --help-policy CMP0167" for policy details. Use the cmake_policy command to 326s set the policy and suppress this warning. 326s 326s Call Stack (most recent call first): 326s undocumented/poisson1D-in-2D/cpp/CMakeLists.txt:18 (include) 326s This warning is for project developers. Use -Wno-dev to suppress it. 326s 326s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 326s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 326s --help-policy CMP0167" for policy details. Use the cmake_policy command to 326s set the policy and suppress this warning. 326s 326s Call Stack (most recent call first): 326s undocumented/poisson-disc/cpp/CMakeLists.txt:18 (include) 326s This warning is for project developers. Use -Wno-dev to suppress it. 326s 326s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 326s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 326s --help-policy CMP0167" for policy details. Use the cmake_policy command to 326s set the policy and suppress this warning. 326s 326s Call Stack (most recent call first): 326s undocumented/refinement/cpp/CMakeLists.txt:18 (include) 326s This warning is for project developers. Use -Wno-dev to suppress it. 326s 326s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 326s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 326s --help-policy CMP0167" for policy details. Use the cmake_policy command to 326s set the policy and suppress this warning. 326s 326s Call Stack (most recent call first): 326s undocumented/spatial-coordinates/cpp/CMakeLists.txt:18 (include) 326s This warning is for project developers. Use -Wno-dev to suppress it. 326s 326s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 326s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 326s --help-policy CMP0167" for policy details. Use the cmake_policy command to 326s set the policy and suppress this warning. 326s 326s Call Stack (most recent call first): 326s undocumented/submesh/cpp/CMakeLists.txt:18 (include) 326s This warning is for project developers. Use -Wno-dev to suppress it. 326s 326s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 326s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 326s --help-policy CMP0167" for policy details. Use the cmake_policy command to 326s set the policy and suppress this warning. 326s 326s Call Stack (most recent call first): 326s undocumented/sym-dirichlet-bc/cpp/CMakeLists.txt:18 (include) 326s This warning is for project developers. Use -Wno-dev to suppress it. 326s 327s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 327s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 327s --help-policy CMP0167" for policy details. Use the cmake_policy command to 327s set the policy and suppress this warning. 327s 327s Call Stack (most recent call first): 327s undocumented/time-series/cpp/CMakeLists.txt:18 (include) 327s This warning is for project developers. Use -Wno-dev to suppress it. 327s 327s CMake Warning (dev) at /usr/lib/aarch64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 327s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 327s --help-policy CMP0167" for policy details. Use the cmake_policy command to 327s set the policy and suppress this warning. 327s 327s Call Stack (most recent call first): 327s undocumented/waveguide/cpp/CMakeLists.txt:18 (include) 327s This warning is for project developers. Use -Wno-dev to suppress it. 327s 327s -- Configuring done (5.0s) 327s -- Generating done (0.3s) 327s -- Build files have been written to: /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo 327s /usr/bin/cmake -S/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo -B/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo --check-build-system CMakeFiles/Makefile.cmake 0 327s /usr/bin/cmake -E cmake_progress_start /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/CMakeFiles /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo//CMakeFiles/progress.marks 327s make -f CMakeFiles/Makefile2 all 327s make[1]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 327s make -f documented/auto-adaptive-poisson/cpp/CMakeFiles/demo_auto-adaptive-poisson.dir/build.make documented/auto-adaptive-poisson/cpp/CMakeFiles/demo_auto-adaptive-poisson.dir/depend 327s make -f documented/bcs/cpp/CMakeFiles/demo_bcs.dir/build.make documented/bcs/cpp/CMakeFiles/demo_bcs.dir/depend 327s make -f documented/biharmonic/cpp/CMakeFiles/demo_biharmonic.dir/build.make documented/biharmonic/cpp/CMakeFiles/demo_biharmonic.dir/depend 327s make -f documented/built-in-meshes/cpp/CMakeFiles/demo_built-in-meshes.dir/build.make documented/built-in-meshes/cpp/CMakeFiles/demo_built-in-meshes.dir/depend 327s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 327s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/auto-adaptive-poisson/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/auto-adaptive-poisson/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/auto-adaptive-poisson/cpp/CMakeFiles/demo_auto-adaptive-poisson.dir/DependInfo.cmake "--color=" 327s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 327s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 327s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/bcs/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/bcs/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/bcs/cpp/CMakeFiles/demo_bcs.dir/DependInfo.cmake "--color=" 327s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/biharmonic/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/biharmonic/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/biharmonic/cpp/CMakeFiles/demo_biharmonic.dir/DependInfo.cmake "--color=" 327s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 327s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/built-in-meshes/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/built-in-meshes/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/built-in-meshes/cpp/CMakeFiles/demo_built-in-meshes.dir/DependInfo.cmake "--color=" 327s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 327s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 327s make -f documented/auto-adaptive-poisson/cpp/CMakeFiles/demo_auto-adaptive-poisson.dir/build.make documented/auto-adaptive-poisson/cpp/CMakeFiles/demo_auto-adaptive-poisson.dir/build 327s make -f documented/biharmonic/cpp/CMakeFiles/demo_biharmonic.dir/build.make documented/biharmonic/cpp/CMakeFiles/demo_biharmonic.dir/build 327s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 327s make -f documented/bcs/cpp/CMakeFiles/demo_bcs.dir/build.make documented/bcs/cpp/CMakeFiles/demo_bcs.dir/build 327s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 327s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 327s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 327s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 327s make -f documented/built-in-meshes/cpp/CMakeFiles/demo_built-in-meshes.dir/build.make documented/built-in-meshes/cpp/CMakeFiles/demo_built-in-meshes.dir/build 327s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 327s [ 2%] Building CXX object documented/biharmonic/cpp/CMakeFiles/demo_biharmonic.dir/main.cpp.o 327s [ 2%] Building CXX object documented/auto-adaptive-poisson/cpp/CMakeFiles/demo_auto-adaptive-poisson.dir/main.cpp.o 327s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/auto-adaptive-poisson/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/auto-adaptive-poisson/cpp/CMakeFiles/demo_auto-adaptive-poisson.dir/main.cpp.o -MF CMakeFiles/demo_auto-adaptive-poisson.dir/main.cpp.o.d -o CMakeFiles/demo_auto-adaptive-poisson.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/auto-adaptive-poisson/cpp/main.cpp 327s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/biharmonic/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/biharmonic/cpp/CMakeFiles/demo_biharmonic.dir/main.cpp.o -MF CMakeFiles/demo_biharmonic.dir/main.cpp.o.d -o CMakeFiles/demo_biharmonic.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/biharmonic/cpp/main.cpp 327s [ 3%] Building CXX object documented/bcs/cpp/CMakeFiles/demo_bcs.dir/main.cpp.o 327s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/bcs/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/bcs/cpp/CMakeFiles/demo_bcs.dir/main.cpp.o -MF CMakeFiles/demo_bcs.dir/main.cpp.o.d -o CMakeFiles/demo_bcs.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/bcs/cpp/main.cpp 327s [ 4%] Building CXX object documented/built-in-meshes/cpp/CMakeFiles/demo_built-in-meshes.dir/main.cpp.o 327s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/built-in-meshes/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/built-in-meshes/cpp/CMakeFiles/demo_built-in-meshes.dir/main.cpp.o -MF CMakeFiles/demo_built-in-meshes.dir/main.cpp.o.d -o CMakeFiles/demo_built-in-meshes.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/built-in-meshes/cpp/main.cpp 335s [ 5%] Linking CXX executable demo_built-in-meshes 335s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/built-in-meshes/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_built-in-meshes.dir/link.txt --verbose=1 335s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG "CMakeFiles/demo_built-in-meshes.dir/main.cpp.o" -o demo_built-in-meshes -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 335s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 335s [ 5%] Built target demo_built-in-meshes 335s make -f documented/cahn-hilliard/cpp/CMakeFiles/demo_cahn-hilliard.dir/build.make documented/cahn-hilliard/cpp/CMakeFiles/demo_cahn-hilliard.dir/depend 335s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 335s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/cahn-hilliard/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/cahn-hilliard/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/cahn-hilliard/cpp/CMakeFiles/demo_cahn-hilliard.dir/DependInfo.cmake "--color=" 335s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 335s make -f documented/cahn-hilliard/cpp/CMakeFiles/demo_cahn-hilliard.dir/build.make documented/cahn-hilliard/cpp/CMakeFiles/demo_cahn-hilliard.dir/build 335s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 335s [ 6%] Building CXX object documented/cahn-hilliard/cpp/CMakeFiles/demo_cahn-hilliard.dir/CahnHilliard2D.cpp.o 335s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/cahn-hilliard/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/cahn-hilliard/cpp/CMakeFiles/demo_cahn-hilliard.dir/CahnHilliard2D.cpp.o -MF CMakeFiles/demo_cahn-hilliard.dir/CahnHilliard2D.cpp.o.d -o CMakeFiles/demo_cahn-hilliard.dir/CahnHilliard2D.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/cahn-hilliard/cpp/CahnHilliard2D.cpp 339s [ 7%] Linking CXX executable demo_bcs 339s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/bcs/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_bcs.dir/link.txt --verbose=1 339s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG CMakeFiles/demo_bcs.dir/main.cpp.o -o demo_bcs -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 339s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 339s [ 7%] Built target demo_bcs 339s make -f documented/eigenvalue/cpp/CMakeFiles/demo_eigenvalue.dir/build.make documented/eigenvalue/cpp/CMakeFiles/demo_eigenvalue.dir/depend 339s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 339s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/eigenvalue/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/eigenvalue/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/eigenvalue/cpp/CMakeFiles/demo_eigenvalue.dir/DependInfo.cmake "--color=" 339s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 339s make -f documented/eigenvalue/cpp/CMakeFiles/demo_eigenvalue.dir/build.make 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CMakeFiles/demo_eigenvalue.dir/main.cpp.o.d -o CMakeFiles/demo_eigenvalue.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/eigenvalue/cpp/main.cpp 341s [ 9%] Linking CXX executable demo_biharmonic 341s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/biharmonic/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_biharmonic.dir/link.txt --verbose=1 341s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG CMakeFiles/demo_biharmonic.dir/main.cpp.o -o demo_biharmonic -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 342s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 342s [ 9%] Built target demo_biharmonic 342s [ 10%] Building CXX object documented/cahn-hilliard/cpp/CMakeFiles/demo_cahn-hilliard.dir/CahnHilliard3D.cpp.o 342s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/cahn-hilliard/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/cahn-hilliard/cpp/CMakeFiles/demo_cahn-hilliard.dir/CahnHilliard3D.cpp.o -MF CMakeFiles/demo_cahn-hilliard.dir/CahnHilliard3D.cpp.o.d -o CMakeFiles/demo_cahn-hilliard.dir/CahnHilliard3D.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/cahn-hilliard/cpp/CahnHilliard3D.cpp 342s [ 11%] Building CXX object documented/cahn-hilliard/cpp/CMakeFiles/demo_cahn-hilliard.dir/main.cpp.o 342s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/cahn-hilliard/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/cahn-hilliard/cpp/CMakeFiles/demo_cahn-hilliard.dir/main.cpp.o -MF CMakeFiles/demo_cahn-hilliard.dir/main.cpp.o.d -o CMakeFiles/demo_cahn-hilliard.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/cahn-hilliard/cpp/main.cpp 349s [ 12%] Linking CXX executable demo_auto-adaptive-poisson 349s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/auto-adaptive-poisson/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_auto-adaptive-poisson.dir/link.txt --verbose=1 349s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG "CMakeFiles/demo_auto-adaptive-poisson.dir/main.cpp.o" -o demo_auto-adaptive-poisson 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documented/hyperelasticity/cpp/CMakeFiles/demo_hyperelasticity.dir/main.cpp.o -MF CMakeFiles/demo_hyperelasticity.dir/main.cpp.o.d -o CMakeFiles/demo_hyperelasticity.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/hyperelasticity/cpp/main.cpp 350s [ 14%] Linking CXX executable demo_eigenvalue 350s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/eigenvalue/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_eigenvalue.dir/link.txt --verbose=1 350s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG CMakeFiles/demo_eigenvalue.dir/main.cpp.o -o demo_eigenvalue -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so 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/usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/mixed-poisson/cpp/CMakeFiles/demo_mixed-poisson.dir/main.cpp.o -MF CMakeFiles/demo_mixed-poisson.dir/main.cpp.o.d -o CMakeFiles/demo_mixed-poisson.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/mixed-poisson/cpp/main.cpp 351s make -f documented/navier-stokes/cpp/CMakeFiles/demo_navier-stokes.dir/build.make documented/navier-stokes/cpp/CMakeFiles/demo_navier-stokes.dir/depend 351s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 351s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/navier-stokes/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/navier-stokes/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/navier-stokes/cpp/CMakeFiles/demo_navier-stokes.dir/DependInfo.cmake "--color=" 351s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 351s make -f documented/navier-stokes/cpp/CMakeFiles/demo_navier-stokes.dir/build.make documented/navier-stokes/cpp/CMakeFiles/demo_navier-stokes.dir/build 351s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 351s [ 16%] Building CXX object documented/navier-stokes/cpp/CMakeFiles/demo_navier-stokes.dir/main.cpp.o 351s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/navier-stokes/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/navier-stokes/cpp/CMakeFiles/demo_navier-stokes.dir/main.cpp.o -MF CMakeFiles/demo_navier-stokes.dir/main.cpp.o.d -o CMakeFiles/demo_navier-stokes.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/navier-stokes/cpp/main.cpp 352s [ 17%] Linking CXX executable demo_cahn-hilliard 352s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/cahn-hilliard/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_cahn-hilliard.dir/link.txt --verbose=1 352s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG "CMakeFiles/demo_cahn-hilliard.dir/CahnHilliard2D.cpp.o" "CMakeFiles/demo_cahn-hilliard.dir/CahnHilliard3D.cpp.o" "CMakeFiles/demo_cahn-hilliard.dir/main.cpp.o" -o demo_cahn-hilliard -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 353s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 353s [ 17%] Built target demo_cahn-hilliard 353s make -f documented/neumann-poisson/cpp/CMakeFiles/demo_neumann-poisson.dir/build.make documented/neumann-poisson/cpp/CMakeFiles/demo_neumann-poisson.dir/depend 353s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 353s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/neumann-poisson/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/neumann-poisson/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/neumann-poisson/cpp/CMakeFiles/demo_neumann-poisson.dir/DependInfo.cmake "--color=" 353s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 353s make -f documented/neumann-poisson/cpp/CMakeFiles/demo_neumann-poisson.dir/build.make documented/neumann-poisson/cpp/CMakeFiles/demo_neumann-poisson.dir/build 353s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 353s [ 18%] Building CXX object documented/neumann-poisson/cpp/CMakeFiles/demo_neumann-poisson.dir/main.cpp.o 353s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/neumann-poisson/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/neumann-poisson/cpp/CMakeFiles/demo_neumann-poisson.dir/main.cpp.o -MF CMakeFiles/demo_neumann-poisson.dir/main.cpp.o.d -o CMakeFiles/demo_neumann-poisson.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/neumann-poisson/cpp/main.cpp 363s [ 19%] Linking CXX executable demo_mixed-poisson 363s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/mixed-poisson/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_mixed-poisson.dir/link.txt --verbose=1 363s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG "CMakeFiles/demo_mixed-poisson.dir/main.cpp.o" -o demo_mixed-poisson -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 363s [ 20%] Linking CXX executable demo_hyperelasticity 363s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/hyperelasticity/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_hyperelasticity.dir/link.txt --verbose=1 363s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG CMakeFiles/demo_hyperelasticity.dir/main.cpp.o -o demo_hyperelasticity -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 363s [ 21%] Linking CXX executable demo_neumann-poisson 363s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/neumann-poisson/cpp && /usr/bin/cmake -E cmake_link_script 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'/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 363s [ 21%] Built target demo_mixed-poisson 363s make -f documented/nonlinear-poisson/cpp/CMakeFiles/demo_nonlinear-poisson.dir/build.make documented/nonlinear-poisson/cpp/CMakeFiles/demo_nonlinear-poisson.dir/depend 363s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 363s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/nonlinear-poisson/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/nonlinear-poisson/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/nonlinear-poisson/cpp/CMakeFiles/demo_nonlinear-poisson.dir/DependInfo.cmake "--color=" 363s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 363s make -f 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-O2 -g -DNDEBUG -std=c++11 -MD -MT documented/nonlinear-poisson/cpp/CMakeFiles/demo_nonlinear-poisson.dir/main.cpp.o -MF CMakeFiles/demo_nonlinear-poisson.dir/main.cpp.o.d -o CMakeFiles/demo_nonlinear-poisson.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/nonlinear-poisson/cpp/main.cpp 363s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 363s [ 22%] Built target demo_hyperelasticity 363s make -f documented/nonmatching-interpolation/cpp/CMakeFiles/demo_nonmatching-interpolation.dir/build.make documented/nonmatching-interpolation/cpp/CMakeFiles/demo_nonmatching-interpolation.dir/depend 363s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 363s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/nonmatching-interpolation/cpp 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-DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/nonmatching-interpolation/cpp/CMakeFiles/demo_nonmatching-interpolation.dir/main.cpp.o -MF CMakeFiles/demo_nonmatching-interpolation.dir/main.cpp.o.d -o CMakeFiles/demo_nonmatching-interpolation.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/nonmatching-interpolation/cpp/main.cpp 364s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 364s [ 23%] Built target demo_neumann-poisson 364s make -f 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'/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 364s [ 24%] Building CXX object documented/periodic/cpp/CMakeFiles/demo_periodic.dir/main.cpp.o 364s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/periodic/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/periodic/cpp/CMakeFiles/demo_periodic.dir/main.cpp.o -MF CMakeFiles/demo_periodic.dir/main.cpp.o.d -o CMakeFiles/demo_periodic.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/periodic/cpp/main.cpp 374s [ 25%] Linking CXX executable demo_nonmatching-interpolation 374s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/nonmatching-interpolation/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_nonmatching-interpolation.dir/link.txt --verbose=1 374s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG "CMakeFiles/demo_nonmatching-interpolation.dir/main.cpp.o" -o demo_nonmatching-interpolation -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so 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/usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 375s [ 27%] Building CXX object documented/poisson/cpp/CMakeFiles/demo_poisson.dir/main.cpp.o 375s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/poisson/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/poisson/cpp/CMakeFiles/demo_poisson.dir/main.cpp.o -MF CMakeFiles/demo_poisson.dir/main.cpp.o.d -o CMakeFiles/demo_poisson.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/poisson/cpp/main.cpp 375s [ 28%] Linking CXX executable demo_periodic 375s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/periodic/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_periodic.dir/link.txt --verbose=1 375s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG CMakeFiles/demo_periodic.dir/main.cpp.o -o demo_periodic 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-isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/stokes-iterative/cpp/CMakeFiles/demo_stokes-iterative.dir/main.cpp.o -MF CMakeFiles/demo_stokes-iterative.dir/main.cpp.o.d -o CMakeFiles/demo_stokes-iterative.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/stokes-iterative/cpp/main.cpp 380s [ 31%] Linking CXX executable demo_navier-stokes 380s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/navier-stokes/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_navier-stokes.dir/link.txt --verbose=1 380s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG "CMakeFiles/demo_navier-stokes.dir/main.cpp.o" -o demo_navier-stokes 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documented/stokes-taylor-hood/cpp/CMakeFiles/demo_stokes-taylor-hood.dir/main.cpp.o -MF CMakeFiles/demo_stokes-taylor-hood.dir/main.cpp.o.d -o CMakeFiles/demo_stokes-taylor-hood.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/stokes-taylor-hood/cpp/main.cpp 385s [ 33%] Linking CXX executable demo_poisson 385s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/poisson/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_poisson.dir/link.txt --verbose=1 385s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG CMakeFiles/demo_poisson.dir/main.cpp.o -o demo_poisson -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 386s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 386s [ 33%] Built target demo_poisson 386s make -f documented/subdomains/cpp/CMakeFiles/demo_subdomains.dir/build.make documented/subdomains/cpp/CMakeFiles/demo_subdomains.dir/depend 386s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 386s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/subdomains/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/subdomains/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/subdomains/cpp/CMakeFiles/demo_subdomains.dir/DependInfo.cmake "--color=" 386s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 386s make -f documented/subdomains/cpp/CMakeFiles/demo_subdomains.dir/build.make documented/subdomains/cpp/CMakeFiles/demo_subdomains.dir/build 386s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 386s [ 34%] Building CXX object documented/subdomains/cpp/CMakeFiles/demo_subdomains.dir/main.cpp.o 386s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/subdomains/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/subdomains/cpp/CMakeFiles/demo_subdomains.dir/main.cpp.o -MF CMakeFiles/demo_subdomains.dir/main.cpp.o.d -o CMakeFiles/demo_subdomains.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/subdomains/cpp/main.cpp 387s [ 35%] Linking CXX executable demo_singular-poisson 387s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/singular-poisson/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_singular-poisson.dir/link.txt --verbose=1 387s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG "CMakeFiles/demo_singular-poisson.dir/main.cpp.o" -o demo_singular-poisson -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 388s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 388s [ 35%] Built target demo_singular-poisson 388s make -f 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/usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 395s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 395s [ 36%] Built target demo_subdomains 395s make -f undocumented/ale/cpp/CMakeFiles/demo_ale.dir/build.make undocumented/ale/cpp/CMakeFiles/demo_ale.dir/depend 395s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 395s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/ale/cpp 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/usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/ale/cpp/CMakeFiles/demo_ale.dir/main.cpp.o -MF CMakeFiles/demo_ale.dir/main.cpp.o.d -o CMakeFiles/demo_ale.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/ale/cpp/main.cpp 395s [ 38%] Linking CXX executable demo_stokes-iterative 395s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/stokes-iterative/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_stokes-iterative.dir/link.txt --verbose=1 395s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG "CMakeFiles/demo_stokes-iterative.dir/main.cpp.o" -o demo_stokes-iterative 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-isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/auto-adaptive-navier-stokes/cpp/CMakeFiles/demo_auto-adaptive-navier-stokes.dir/main.cpp.o -MF CMakeFiles/demo_auto-adaptive-navier-stokes.dir/main.cpp.o.d -o CMakeFiles/demo_auto-adaptive-navier-stokes.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/auto-adaptive-navier-stokes/cpp/main.cpp 398s [ 40%] Linking CXX executable demo_stokes-taylor-hood 398s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/documented/stokes-taylor-hood/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_stokes-taylor-hood.dir/link.txt --verbose=1 398s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG "CMakeFiles/demo_stokes-taylor-hood.dir/main.cpp.o" -o demo_stokes-taylor-hood 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Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 398s [ 41%] Building CXX object undocumented/block-matrix/cpp/CMakeFiles/demo_block-matrix.dir/main.cpp.o 398s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/block-matrix/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/block-matrix/cpp/CMakeFiles/demo_block-matrix.dir/main.cpp.o -MF CMakeFiles/demo_block-matrix.dir/main.cpp.o.d -o CMakeFiles/demo_block-matrix.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/block-matrix/cpp/main.cpp 403s [ 42%] Linking CXX executable demo_ale 403s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/ale/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_ale.dir/link.txt --verbose=1 403s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG CMakeFiles/demo_ale.dir/main.cpp.o -o demo_ale -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 403s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 403s [ 42%] Built target demo_ale 403s make -f undocumented/conditional/cpp/CMakeFiles/demo_conditional.dir/build.make undocumented/conditional/cpp/CMakeFiles/demo_conditional.dir/depend 403s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 403s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/conditional/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/conditional/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/conditional/cpp/CMakeFiles/demo_conditional.dir/DependInfo.cmake "--color=" 403s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 403s make -f undocumented/conditional/cpp/CMakeFiles/demo_conditional.dir/build.make undocumented/conditional/cpp/CMakeFiles/demo_conditional.dir/build 403s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 403s [ 43%] Building CXX object undocumented/conditional/cpp/CMakeFiles/demo_conditional.dir/main.cpp.o 403s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/conditional/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/conditional/cpp/CMakeFiles/demo_conditional.dir/main.cpp.o -MF CMakeFiles/demo_conditional.dir/main.cpp.o.d -o CMakeFiles/demo_conditional.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/conditional/cpp/main.cpp 406s [ 44%] Linking CXX executable demo_advection-diffusion 406s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/advection-diffusion/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_advection-diffusion.dir/link.txt --verbose=1 406s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG "CMakeFiles/demo_advection-diffusion.dir/main.cpp.o" -o demo_advection-diffusion -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 407s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 407s [ 44%] Built target demo_advection-diffusion 407s make -f undocumented/contact-vi-snes/cpp/CMakeFiles/demo_contact-vi-snes.dir/build.make undocumented/contact-vi-snes/cpp/CMakeFiles/demo_contact-vi-snes.dir/depend 407s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 407s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/contact-vi-snes/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/contact-vi-snes/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/contact-vi-snes/cpp/CMakeFiles/demo_contact-vi-snes.dir/DependInfo.cmake "--color=" 407s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 407s make -f undocumented/contact-vi-snes/cpp/CMakeFiles/demo_contact-vi-snes.dir/build.make undocumented/contact-vi-snes/cpp/CMakeFiles/demo_contact-vi-snes.dir/build 407s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 407s [ 45%] Building CXX object undocumented/contact-vi-snes/cpp/CMakeFiles/demo_contact-vi-snes.dir/main.cpp.o 407s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/contact-vi-snes/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/contact-vi-snes/cpp/CMakeFiles/demo_contact-vi-snes.dir/main.cpp.o -MF CMakeFiles/demo_contact-vi-snes.dir/main.cpp.o.d -o CMakeFiles/demo_contact-vi-snes.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/contact-vi-snes/cpp/main.cpp 409s [ 46%] Linking CXX executable demo_block-matrix 409s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/block-matrix/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_block-matrix.dir/link.txt --verbose=1 409s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG "CMakeFiles/demo_block-matrix.dir/main.cpp.o" -o demo_block-matrix -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 410s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 410s [ 46%] Built target demo_block-matrix 410s make -f undocumented/contact-vi-tao/cpp/CMakeFiles/demo_contact-vi-tao.dir/build.make undocumented/contact-vi-tao/cpp/CMakeFiles/demo_contact-vi-tao.dir/depend 410s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 410s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/contact-vi-tao/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/contact-vi-tao/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/contact-vi-tao/cpp/CMakeFiles/demo_contact-vi-tao.dir/DependInfo.cmake "--color=" 410s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 410s make -f undocumented/contact-vi-tao/cpp/CMakeFiles/demo_contact-vi-tao.dir/build.make undocumented/contact-vi-tao/cpp/CMakeFiles/demo_contact-vi-tao.dir/build 410s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 410s [ 47%] Building CXX object undocumented/contact-vi-tao/cpp/CMakeFiles/demo_contact-vi-tao.dir/main.cpp.o 410s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/contact-vi-tao/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/contact-vi-tao/cpp/CMakeFiles/demo_contact-vi-tao.dir/main.cpp.o -MF CMakeFiles/demo_contact-vi-tao.dir/main.cpp.o.d -o CMakeFiles/demo_contact-vi-tao.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/contact-vi-tao/cpp/main.cpp 414s [ 48%] Linking CXX executable demo_conditional 414s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/conditional/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_conditional.dir/link.txt --verbose=1 414s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG CMakeFiles/demo_conditional.dir/main.cpp.o -o demo_conditional -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 415s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 415s [ 48%] Built target demo_conditional 415s make -f undocumented/curl-curl/cpp/CMakeFiles/demo_curl-curl.dir/build.make undocumented/curl-curl/cpp/CMakeFiles/demo_curl-curl.dir/depend 415s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 415s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/curl-curl/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/curl-curl/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/curl-curl/cpp/CMakeFiles/demo_curl-curl.dir/DependInfo.cmake "--color=" 415s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 415s make -f undocumented/curl-curl/cpp/CMakeFiles/demo_curl-curl.dir/build.make undocumented/curl-curl/cpp/CMakeFiles/demo_curl-curl.dir/build 415s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 415s [ 48%] Building CXX object undocumented/curl-curl/cpp/CMakeFiles/demo_curl-curl.dir/main.cpp.o 415s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/curl-curl/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/curl-curl/cpp/CMakeFiles/demo_curl-curl.dir/main.cpp.o -MF CMakeFiles/demo_curl-curl.dir/main.cpp.o.d -o CMakeFiles/demo_curl-curl.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/curl-curl/cpp/main.cpp 418s [ 49%] Linking CXX executable demo_contact-vi-snes 418s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/contact-vi-snes/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_contact-vi-snes.dir/link.txt --verbose=1 418s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG "CMakeFiles/demo_contact-vi-snes.dir/main.cpp.o" -o demo_contact-vi-snes -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 418s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 418s [ 49%] Built target demo_contact-vi-snes 418s make -f undocumented/dg-advection-diffusion/cpp/CMakeFiles/demo_dg-advection-diffusion.dir/build.make undocumented/dg-advection-diffusion/cpp/CMakeFiles/demo_dg-advection-diffusion.dir/depend 418s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 418s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/dg-advection-diffusion/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/dg-advection-diffusion/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/dg-advection-diffusion/cpp/CMakeFiles/demo_dg-advection-diffusion.dir/DependInfo.cmake "--color=" 418s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 418s make -f undocumented/dg-advection-diffusion/cpp/CMakeFiles/demo_dg-advection-diffusion.dir/build.make undocumented/dg-advection-diffusion/cpp/CMakeFiles/demo_dg-advection-diffusion.dir/build 418s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 418s [ 50%] Building CXX object undocumented/dg-advection-diffusion/cpp/CMakeFiles/demo_dg-advection-diffusion.dir/main.cpp.o 418s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/dg-advection-diffusion/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/dg-advection-diffusion/cpp/CMakeFiles/demo_dg-advection-diffusion.dir/main.cpp.o -MF CMakeFiles/demo_dg-advection-diffusion.dir/main.cpp.o.d -o CMakeFiles/demo_dg-advection-diffusion.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/dg-advection-diffusion/cpp/main.cpp 420s [ 51%] Linking CXX executable demo_contact-vi-tao 420s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/contact-vi-tao/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_contact-vi-tao.dir/link.txt --verbose=1 420s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG "CMakeFiles/demo_contact-vi-tao.dir/main.cpp.o" -o demo_contact-vi-tao -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 420s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 420s [ 51%] Built target demo_contact-vi-tao 420s make -f undocumented/dg-poisson/cpp/CMakeFiles/demo_dg-poisson.dir/build.make undocumented/dg-poisson/cpp/CMakeFiles/demo_dg-poisson.dir/depend 420s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 420s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/dg-poisson/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/dg-poisson/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/dg-poisson/cpp/CMakeFiles/demo_dg-poisson.dir/DependInfo.cmake "--color=" 420s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 420s make -f undocumented/dg-poisson/cpp/CMakeFiles/demo_dg-poisson.dir/build.make undocumented/dg-poisson/cpp/CMakeFiles/demo_dg-poisson.dir/build 420s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 420s [ 52%] Building CXX object undocumented/dg-poisson/cpp/CMakeFiles/demo_dg-poisson.dir/main.cpp.o 420s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/dg-poisson/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/dg-poisson/cpp/CMakeFiles/demo_dg-poisson.dir/main.cpp.o -MF CMakeFiles/demo_dg-poisson.dir/main.cpp.o.d -o CMakeFiles/demo_dg-poisson.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/dg-poisson/cpp/main.cpp 432s [ 53%] Linking CXX executable demo_dg-poisson 432s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/dg-poisson/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dg-poisson.dir/link.txt --verbose=1 432s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG "CMakeFiles/demo_dg-poisson.dir/main.cpp.o" -o demo_dg-poisson -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 432s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 432s [ 53%] Built target demo_dg-poisson 432s make -f undocumented/elasticity/cpp/CMakeFiles/demo_elasticity.dir/build.make undocumented/elasticity/cpp/CMakeFiles/demo_elasticity.dir/depend 432s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 432s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/elasticity/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/elasticity/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/elasticity/cpp/CMakeFiles/demo_elasticity.dir/DependInfo.cmake "--color=" 432s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 432s make -f undocumented/elasticity/cpp/CMakeFiles/demo_elasticity.dir/build.make undocumented/elasticity/cpp/CMakeFiles/demo_elasticity.dir/build 432s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 432s [ 54%] Building CXX object undocumented/elasticity/cpp/CMakeFiles/demo_elasticity.dir/main.cpp.o 432s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/elasticity/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/elasticity/cpp/CMakeFiles/demo_elasticity.dir/main.cpp.o -MF CMakeFiles/demo_elasticity.dir/main.cpp.o.d -o CMakeFiles/demo_elasticity.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/elasticity/cpp/main.cpp 433s [ 55%] Linking CXX executable demo_curl-curl 433s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/curl-curl/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_curl-curl.dir/link.txt --verbose=1 433s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG "CMakeFiles/demo_curl-curl.dir/main.cpp.o" -o demo_curl-curl -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 433s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 433s [ 55%] Built target demo_curl-curl 433s make -f undocumented/elastodynamics/cpp/CMakeFiles/demo_elastodynamics.dir/build.make undocumented/elastodynamics/cpp/CMakeFiles/demo_elastodynamics.dir/depend 433s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 433s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/elastodynamics/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/elastodynamics/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/elastodynamics/cpp/CMakeFiles/demo_elastodynamics.dir/DependInfo.cmake "--color=" 434s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 434s make -f undocumented/elastodynamics/cpp/CMakeFiles/demo_elastodynamics.dir/build.make undocumented/elastodynamics/cpp/CMakeFiles/demo_elastodynamics.dir/build 434s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 434s [ 56%] Building CXX object undocumented/elastodynamics/cpp/CMakeFiles/demo_elastodynamics.dir/main.cpp.o 434s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/elastodynamics/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/elastodynamics/cpp/CMakeFiles/demo_elastodynamics.dir/main.cpp.o -MF CMakeFiles/demo_elastodynamics.dir/main.cpp.o.d -o CMakeFiles/demo_elastodynamics.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/elastodynamics/cpp/main.cpp 438s [ 57%] Linking CXX executable demo_auto-adaptive-navier-stokes 438s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/auto-adaptive-navier-stokes/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_auto-adaptive-navier-stokes.dir/link.txt --verbose=1 438s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG "CMakeFiles/demo_auto-adaptive-navier-stokes.dir/main.cpp.o" -o demo_auto-adaptive-navier-stokes -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 439s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 439s [ 57%] Built target demo_auto-adaptive-navier-stokes 439s make -f undocumented/eval/cpp/CMakeFiles/demo_eval.dir/build.make undocumented/eval/cpp/CMakeFiles/demo_eval.dir/depend 439s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 439s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/eval/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/eval/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/eval/cpp/CMakeFiles/demo_eval.dir/DependInfo.cmake "--color=" 439s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 439s make -f undocumented/eval/cpp/CMakeFiles/demo_eval.dir/build.make undocumented/eval/cpp/CMakeFiles/demo_eval.dir/build 439s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 439s [ 58%] Building CXX object undocumented/eval/cpp/CMakeFiles/demo_eval.dir/main.cpp.o 439s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/eval/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/eval/cpp/CMakeFiles/demo_eval.dir/main.cpp.o -MF CMakeFiles/demo_eval.dir/main.cpp.o.d -o CMakeFiles/demo_eval.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/eval/cpp/main.cpp 440s [ 59%] Linking CXX executable demo_dg-advection-diffusion 440s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/dg-advection-diffusion/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dg-advection-diffusion.dir/link.txt --verbose=1 440s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG "CMakeFiles/demo_dg-advection-diffusion.dir/main.cpp.o" -o demo_dg-advection-diffusion -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 440s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 440s [ 59%] Built target demo_dg-advection-diffusion 440s make -f undocumented/extrapolation/cpp/CMakeFiles/demo_extrapolation.dir/build.make undocumented/extrapolation/cpp/CMakeFiles/demo_extrapolation.dir/depend 440s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 440s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/extrapolation/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/extrapolation/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/extrapolation/cpp/CMakeFiles/demo_extrapolation.dir/DependInfo.cmake "--color=" 440s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 440s make -f undocumented/extrapolation/cpp/CMakeFiles/demo_extrapolation.dir/build.make undocumented/extrapolation/cpp/CMakeFiles/demo_extrapolation.dir/build 440s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 440s [ 60%] Building CXX object undocumented/extrapolation/cpp/CMakeFiles/demo_extrapolation.dir/main.cpp.o 440s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/extrapolation/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/extrapolation/cpp/CMakeFiles/demo_extrapolation.dir/main.cpp.o -MF CMakeFiles/demo_extrapolation.dir/main.cpp.o.d -o CMakeFiles/demo_extrapolation.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/extrapolation/cpp/main.cpp 447s [ 61%] Linking CXX executable demo_elasticity 447s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/elasticity/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_elasticity.dir/link.txt --verbose=1 447s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG CMakeFiles/demo_elasticity.dir/main.cpp.o -o demo_elasticity -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 447s [ 62%] Linking CXX executable demo_elastodynamics 447s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/elastodynamics/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_elastodynamics.dir/link.txt --verbose=1 447s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG CMakeFiles/demo_elastodynamics.dir/main.cpp.o -o demo_elastodynamics -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 448s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 448s [ 62%] Built target demo_elasticity 448s make -f undocumented/functional/cpp/CMakeFiles/demo_functional.dir/build.make undocumented/functional/cpp/CMakeFiles/demo_functional.dir/depend 448s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 448s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/functional/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/functional/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/functional/cpp/CMakeFiles/demo_functional.dir/DependInfo.cmake "--color=" 448s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 448s make -f undocumented/functional/cpp/CMakeFiles/demo_functional.dir/build.make undocumented/functional/cpp/CMakeFiles/demo_functional.dir/build 448s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 448s [ 63%] Building CXX object undocumented/functional/cpp/CMakeFiles/demo_functional.dir/main.cpp.o 448s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/functional/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/functional/cpp/CMakeFiles/demo_functional.dir/main.cpp.o -MF CMakeFiles/demo_functional.dir/main.cpp.o.d -o CMakeFiles/demo_functional.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/functional/cpp/main.cpp 448s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 448s [ 63%] Built target demo_elastodynamics 448s make -f undocumented/gmg-poisson/cpp/CMakeFiles/demo_gmg-poisson.dir/build.make undocumented/gmg-poisson/cpp/CMakeFiles/demo_gmg-poisson.dir/depend 448s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 448s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/gmg-poisson/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/gmg-poisson/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/gmg-poisson/cpp/CMakeFiles/demo_gmg-poisson.dir/DependInfo.cmake "--color=" 448s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 448s make -f undocumented/gmg-poisson/cpp/CMakeFiles/demo_gmg-poisson.dir/build.make undocumented/gmg-poisson/cpp/CMakeFiles/demo_gmg-poisson.dir/build 448s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 448s [ 64%] Building CXX object undocumented/gmg-poisson/cpp/CMakeFiles/demo_gmg-poisson.dir/main.cpp.o 448s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/gmg-poisson/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/gmg-poisson/cpp/CMakeFiles/demo_gmg-poisson.dir/main.cpp.o -MF CMakeFiles/demo_gmg-poisson.dir/main.cpp.o.d -o CMakeFiles/demo_gmg-poisson.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/gmg-poisson/cpp/main.cpp 450s [ 65%] Linking CXX executable demo_extrapolation 450s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/extrapolation/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_extrapolation.dir/link.txt --verbose=1 450s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG CMakeFiles/demo_extrapolation.dir/main.cpp.o -o demo_extrapolation -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 450s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 450s [ 65%] Built target demo_extrapolation 450s make -f undocumented/lift-drag/cpp/CMakeFiles/demo_lift-drag.dir/build.make undocumented/lift-drag/cpp/CMakeFiles/demo_lift-drag.dir/depend 450s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 450s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/lift-drag/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/lift-drag/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/lift-drag/cpp/CMakeFiles/demo_lift-drag.dir/DependInfo.cmake "--color=" 450s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 450s make -f undocumented/lift-drag/cpp/CMakeFiles/demo_lift-drag.dir/build.make undocumented/lift-drag/cpp/CMakeFiles/demo_lift-drag.dir/build 450s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 450s [ 66%] Building CXX object undocumented/lift-drag/cpp/CMakeFiles/demo_lift-drag.dir/main.cpp.o 450s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/lift-drag/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/lift-drag/cpp/CMakeFiles/demo_lift-drag.dir/main.cpp.o -MF CMakeFiles/demo_lift-drag.dir/main.cpp.o.d -o CMakeFiles/demo_lift-drag.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/lift-drag/cpp/main.cpp 451s [ 67%] Linking CXX executable demo_eval 451s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/eval/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_eval.dir/link.txt --verbose=1 451s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG CMakeFiles/demo_eval.dir/main.cpp.o -o demo_eval -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 452s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 452s [ 67%] Built target demo_eval 452s make -f undocumented/mesh-quality/cpp/CMakeFiles/demo_mesh-quality.dir/build.make undocumented/mesh-quality/cpp/CMakeFiles/demo_mesh-quality.dir/depend 452s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 452s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/mesh-quality/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/mesh-quality/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/mesh-quality/cpp/CMakeFiles/demo_mesh-quality.dir/DependInfo.cmake "--color=" 452s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 452s make -f undocumented/mesh-quality/cpp/CMakeFiles/demo_mesh-quality.dir/build.make undocumented/mesh-quality/cpp/CMakeFiles/demo_mesh-quality.dir/build 452s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 452s [ 68%] Building CXX object undocumented/mesh-quality/cpp/CMakeFiles/demo_mesh-quality.dir/main.cpp.o 452s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/mesh-quality/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/mesh-quality/cpp/CMakeFiles/demo_mesh-quality.dir/main.cpp.o -MF CMakeFiles/demo_mesh-quality.dir/main.cpp.o.d -o CMakeFiles/demo_mesh-quality.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/mesh-quality/cpp/main.cpp 458s [ 69%] Linking CXX executable demo_functional 458s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/functional/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_functional.dir/link.txt --verbose=1 458s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG CMakeFiles/demo_functional.dir/main.cpp.o -o demo_functional -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 459s [ 70%] Linking CXX executable demo_gmg-poisson 459s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/gmg-poisson/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_gmg-poisson.dir/link.txt --verbose=1 459s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 459s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG "CMakeFiles/demo_gmg-poisson.dir/main.cpp.o" -o demo_gmg-poisson -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 459s [ 70%] Built target demo_functional 459s make -f undocumented/meshfunction-refinement/cpp/CMakeFiles/demo_meshfunction-refinement.dir/build.make undocumented/meshfunction-refinement/cpp/CMakeFiles/demo_meshfunction-refinement.dir/depend 459s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 459s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/meshfunction-refinement/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/meshfunction-refinement/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/meshfunction-refinement/cpp/CMakeFiles/demo_meshfunction-refinement.dir/DependInfo.cmake "--color=" 459s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 459s make -f undocumented/meshfunction-refinement/cpp/CMakeFiles/demo_meshfunction-refinement.dir/build.make undocumented/meshfunction-refinement/cpp/CMakeFiles/demo_meshfunction-refinement.dir/build 459s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 459s [ 70%] Building CXX object undocumented/meshfunction-refinement/cpp/CMakeFiles/demo_meshfunction-refinement.dir/main.cpp.o 459s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/meshfunction-refinement/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/meshfunction-refinement/cpp/CMakeFiles/demo_meshfunction-refinement.dir/main.cpp.o -MF CMakeFiles/demo_meshfunction-refinement.dir/main.cpp.o.d -o CMakeFiles/demo_meshfunction-refinement.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/meshfunction-refinement/cpp/main.cpp 459s [ 71%] Linking CXX executable demo_mesh-quality 459s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/mesh-quality/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_mesh-quality.dir/link.txt --verbose=1 459s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG "CMakeFiles/demo_mesh-quality.dir/main.cpp.o" -o demo_mesh-quality -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 459s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 459s [ 71%] Built target demo_gmg-poisson 459s make -f undocumented/multimesh-poisson/cpp/CMakeFiles/demo_multimesh-poisson.dir/build.make undocumented/multimesh-poisson/cpp/CMakeFiles/demo_multimesh-poisson.dir/depend 459s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 459s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/multimesh-poisson/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/multimesh-poisson/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/multimesh-poisson/cpp/CMakeFiles/demo_multimesh-poisson.dir/DependInfo.cmake "--color=" 459s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 459s make -f undocumented/multimesh-poisson/cpp/CMakeFiles/demo_multimesh-poisson.dir/build.make undocumented/multimesh-poisson/cpp/CMakeFiles/demo_multimesh-poisson.dir/build 459s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 459s [ 72%] Building CXX object undocumented/multimesh-poisson/cpp/CMakeFiles/demo_multimesh-poisson.dir/main.cpp.o 459s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/multimesh-poisson/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/multimesh-poisson/cpp/CMakeFiles/demo_multimesh-poisson.dir/main.cpp.o -MF CMakeFiles/demo_multimesh-poisson.dir/main.cpp.o.d -o CMakeFiles/demo_multimesh-poisson.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/multimesh-poisson/cpp/main.cpp 460s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 460s [ 72%] Built target demo_mesh-quality 460s make -f undocumented/multimesh-stokes/cpp/CMakeFiles/demo_multimesh-stokes.dir/build.make undocumented/multimesh-stokes/cpp/CMakeFiles/demo_multimesh-stokes.dir/depend 460s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 460s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/multimesh-stokes/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/multimesh-stokes/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/multimesh-stokes/cpp/CMakeFiles/demo_multimesh-stokes.dir/DependInfo.cmake "--color=" 460s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 460s make -f undocumented/multimesh-stokes/cpp/CMakeFiles/demo_multimesh-stokes.dir/build.make undocumented/multimesh-stokes/cpp/CMakeFiles/demo_multimesh-stokes.dir/build 460s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 460s [ 73%] Building CXX object undocumented/multimesh-stokes/cpp/CMakeFiles/demo_multimesh-stokes.dir/main.cpp.o 460s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/multimesh-stokes/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/multimesh-stokes/cpp/CMakeFiles/demo_multimesh-stokes.dir/main.cpp.o -MF CMakeFiles/demo_multimesh-stokes.dir/main.cpp.o.d -o CMakeFiles/demo_multimesh-stokes.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/multimesh-stokes/cpp/main.cpp 461s [ 74%] Linking CXX executable demo_lift-drag 461s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/lift-drag/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_lift-drag.dir/link.txt --verbose=1 461s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG "CMakeFiles/demo_lift-drag.dir/main.cpp.o" -o demo_lift-drag -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 461s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 461s [ 74%] Built target demo_lift-drag 461s make -f undocumented/nonmatching-projection/cpp/CMakeFiles/demo_nonmatching-projection.dir/build.make undocumented/nonmatching-projection/cpp/CMakeFiles/demo_nonmatching-projection.dir/depend 461s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 461s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/nonmatching-projection/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/nonmatching-projection/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/nonmatching-projection/cpp/CMakeFiles/demo_nonmatching-projection.dir/DependInfo.cmake "--color=" 461s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 461s make -f undocumented/nonmatching-projection/cpp/CMakeFiles/demo_nonmatching-projection.dir/build.make undocumented/nonmatching-projection/cpp/CMakeFiles/demo_nonmatching-projection.dir/build 461s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 461s [ 75%] Building CXX object undocumented/nonmatching-projection/cpp/CMakeFiles/demo_nonmatching-projection.dir/main.cpp.o 461s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/nonmatching-projection/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/nonmatching-projection/cpp/CMakeFiles/demo_nonmatching-projection.dir/main.cpp.o -MF CMakeFiles/demo_nonmatching-projection.dir/main.cpp.o.d -o CMakeFiles/demo_nonmatching-projection.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/nonmatching-projection/cpp/main.cpp 467s [ 76%] Linking CXX executable demo_meshfunction-refinement 467s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/meshfunction-refinement/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_meshfunction-refinement.dir/link.txt --verbose=1 467s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG "CMakeFiles/demo_meshfunction-refinement.dir/main.cpp.o" -o demo_meshfunction-refinement -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 468s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 468s [ 76%] Built target demo_meshfunction-refinement 468s make -f undocumented/parallel-refinement/cpp/CMakeFiles/demo_parallel-refinement.dir/build.make undocumented/parallel-refinement/cpp/CMakeFiles/demo_parallel-refinement.dir/depend 468s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 468s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/parallel-refinement/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/parallel-refinement/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/parallel-refinement/cpp/CMakeFiles/demo_parallel-refinement.dir/DependInfo.cmake "--color=" 468s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 468s make -f undocumented/parallel-refinement/cpp/CMakeFiles/demo_parallel-refinement.dir/build.make undocumented/parallel-refinement/cpp/CMakeFiles/demo_parallel-refinement.dir/build 468s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 468s [ 77%] Building CXX object undocumented/parallel-refinement/cpp/CMakeFiles/demo_parallel-refinement.dir/main.cpp.o 468s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/parallel-refinement/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/parallel-refinement/cpp/CMakeFiles/demo_parallel-refinement.dir/main.cpp.o -MF CMakeFiles/demo_parallel-refinement.dir/main.cpp.o.d -o CMakeFiles/demo_parallel-refinement.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/parallel-refinement/cpp/main.cpp 472s [ 78%] Linking CXX executable demo_multimesh-poisson 472s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/multimesh-poisson/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_multimesh-poisson.dir/link.txt --verbose=1 472s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG "CMakeFiles/demo_multimesh-poisson.dir/main.cpp.o" -o demo_multimesh-poisson -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 472s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 472s [ 78%] Built target demo_multimesh-poisson 472s make -f undocumented/parameters/cpp/CMakeFiles/demo_parameters.dir/build.make undocumented/parameters/cpp/CMakeFiles/demo_parameters.dir/depend 472s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 472s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/parameters/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/parameters/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/parameters/cpp/CMakeFiles/demo_parameters.dir/DependInfo.cmake "--color=" 472s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 472s make -f undocumented/parameters/cpp/CMakeFiles/demo_parameters.dir/build.make undocumented/parameters/cpp/CMakeFiles/demo_parameters.dir/build 472s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 472s [ 79%] Building CXX object undocumented/parameters/cpp/CMakeFiles/demo_parameters.dir/main.cpp.o 472s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/parameters/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/parameters/cpp/CMakeFiles/demo_parameters.dir/main.cpp.o -MF CMakeFiles/demo_parameters.dir/main.cpp.o.d -o CMakeFiles/demo_parameters.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/parameters/cpp/main.cpp 475s [ 80%] Linking CXX executable demo_nonmatching-projection 475s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/nonmatching-projection/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_nonmatching-projection.dir/link.txt 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'/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 476s [ 80%] Built target demo_nonmatching-projection 476s make -f undocumented/poisson1D/cpp/CMakeFiles/demo_poisson1D.dir/build.make undocumented/poisson1D/cpp/CMakeFiles/demo_poisson1D.dir/depend 476s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 476s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/poisson1D/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/poisson1D/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/poisson1D/cpp/CMakeFiles/demo_poisson1D.dir/DependInfo.cmake "--color=" 476s [ 81%] Linking CXX executable demo_parallel-refinement 476s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/parallel-refinement/cpp && 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/usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 476s [ 82%] Building CXX object undocumented/poisson1D/cpp/CMakeFiles/demo_poisson1D.dir/main.cpp.o 476s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/poisson1D/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/poisson1D/cpp/CMakeFiles/demo_poisson1D.dir/main.cpp.o -MF CMakeFiles/demo_poisson1D.dir/main.cpp.o.d -o CMakeFiles/demo_poisson1D.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/poisson1D/cpp/main.cpp 476s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 476s [ 82%] Built target demo_parallel-refinement 476s make -f undocumented/poisson1D-in-2D/cpp/CMakeFiles/demo_poisson1D-in-2D.dir/build.make undocumented/poisson1D-in-2D/cpp/CMakeFiles/demo_poisson1D-in-2D.dir/depend 476s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 476s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/poisson1D-in-2D/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/poisson1D-in-2D/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/poisson1D-in-2D/cpp/CMakeFiles/demo_poisson1D-in-2D.dir/DependInfo.cmake "--color=" 476s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 476s make -f undocumented/poisson1D-in-2D/cpp/CMakeFiles/demo_poisson1D-in-2D.dir/build.make undocumented/poisson1D-in-2D/cpp/CMakeFiles/demo_poisson1D-in-2D.dir/build 476s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 476s [ 83%] Building CXX object undocumented/poisson1D-in-2D/cpp/CMakeFiles/demo_poisson1D-in-2D.dir/main.cpp.o 476s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/poisson1D-in-2D/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/poisson1D-in-2D/cpp/CMakeFiles/demo_poisson1D-in-2D.dir/main.cpp.o -MF CMakeFiles/demo_poisson1D-in-2D.dir/main.cpp.o.d -o CMakeFiles/demo_poisson1D-in-2D.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/poisson1D-in-2D/cpp/main.cpp 479s [ 84%] Linking CXX executable demo_parameters 479s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/parameters/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_parameters.dir/link.txt --verbose=1 479s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG CMakeFiles/demo_parameters.dir/main.cpp.o -o demo_parameters -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 480s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 480s [ 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undocumented/poisson-disc/cpp/CMakeFiles/demo_poisson-disc.dir/main.cpp.o -MF CMakeFiles/demo_poisson-disc.dir/main.cpp.o.d -o CMakeFiles/demo_poisson-disc.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/poisson-disc/cpp/main.cpp 480s [ 85%] Linking CXX executable demo_multimesh-stokes 480s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/multimesh-stokes/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_multimesh-stokes.dir/link.txt --verbose=1 480s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG "CMakeFiles/demo_multimesh-stokes.dir/main.cpp.o" -o demo_multimesh-stokes -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 480s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 480s [ 85%] Built target demo_multimesh-stokes 480s make -f undocumented/refinement/cpp/CMakeFiles/demo_refinement.dir/build.make undocumented/refinement/cpp/CMakeFiles/demo_refinement.dir/depend 480s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 480s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/refinement/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/refinement/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/refinement/cpp/CMakeFiles/demo_refinement.dir/DependInfo.cmake "--color=" 480s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 480s make -f undocumented/refinement/cpp/CMakeFiles/demo_refinement.dir/build.make undocumented/refinement/cpp/CMakeFiles/demo_refinement.dir/build 480s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 480s [ 86%] Building CXX object undocumented/refinement/cpp/CMakeFiles/demo_refinement.dir/main.cpp.o 480s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/refinement/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/refinement/cpp/CMakeFiles/demo_refinement.dir/main.cpp.o -MF CMakeFiles/demo_refinement.dir/main.cpp.o.d -o CMakeFiles/demo_refinement.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/refinement/cpp/main.cpp 486s [ 87%] Linking CXX executable demo_poisson1D 486s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/poisson1D/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_poisson1D.dir/link.txt --verbose=1 486s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG CMakeFiles/demo_poisson1D.dir/main.cpp.o -o demo_poisson1D -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 486s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 486s [ 87%] Built target demo_poisson1D 486s make -f undocumented/spatial-coordinates/cpp/CMakeFiles/demo_spatial-coordinates.dir/build.make undocumented/spatial-coordinates/cpp/CMakeFiles/demo_spatial-coordinates.dir/depend 486s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 486s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/spatial-coordinates/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/spatial-coordinates/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/spatial-coordinates/cpp/CMakeFiles/demo_spatial-coordinates.dir/DependInfo.cmake "--color=" 486s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 486s make -f undocumented/spatial-coordinates/cpp/CMakeFiles/demo_spatial-coordinates.dir/build.make undocumented/spatial-coordinates/cpp/CMakeFiles/demo_spatial-coordinates.dir/build 486s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 486s [ 88%] Building CXX object undocumented/spatial-coordinates/cpp/CMakeFiles/demo_spatial-coordinates.dir/main.cpp.o 486s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/spatial-coordinates/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/spatial-coordinates/cpp/CMakeFiles/demo_spatial-coordinates.dir/main.cpp.o -MF CMakeFiles/demo_spatial-coordinates.dir/main.cpp.o.d -o CMakeFiles/demo_spatial-coordinates.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/spatial-coordinates/cpp/main.cpp 487s [ 89%] Linking CXX executable demo_poisson1D-in-2D 487s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/poisson1D-in-2D/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_poisson1D-in-2D.dir/link.txt --verbose=1 487s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG "CMakeFiles/demo_poisson1D-in-2D.dir/main.cpp.o" -o demo_poisson1D-in-2D -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 487s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 487s [ 89%] Built target demo_poisson1D-in-2D 487s make -f undocumented/submesh/cpp/CMakeFiles/demo_submesh.dir/build.make undocumented/submesh/cpp/CMakeFiles/demo_submesh.dir/depend 487s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 487s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/submesh/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/submesh/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/submesh/cpp/CMakeFiles/demo_submesh.dir/DependInfo.cmake "--color=" 487s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 487s make -f undocumented/submesh/cpp/CMakeFiles/demo_submesh.dir/build.make undocumented/submesh/cpp/CMakeFiles/demo_submesh.dir/build 487s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 487s [ 90%] Building CXX object undocumented/submesh/cpp/CMakeFiles/demo_submesh.dir/main.cpp.o 487s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/submesh/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/submesh/cpp/CMakeFiles/demo_submesh.dir/main.cpp.o -MF CMakeFiles/demo_submesh.dir/main.cpp.o.d -o CMakeFiles/demo_submesh.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/submesh/cpp/main.cpp 488s [ 91%] Linking CXX executable demo_refinement 488s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/refinement/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_refinement.dir/link.txt --verbose=1 488s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG CMakeFiles/demo_refinement.dir/main.cpp.o -o demo_refinement -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 489s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 489s [ 91%] Built target demo_refinement 489s make -f undocumented/sym-dirichlet-bc/cpp/CMakeFiles/demo_sym-dirichlet-bc.dir/build.make undocumented/sym-dirichlet-bc/cpp/CMakeFiles/demo_sym-dirichlet-bc.dir/depend 489s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 489s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/sym-dirichlet-bc/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/sym-dirichlet-bc/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/sym-dirichlet-bc/cpp/CMakeFiles/demo_sym-dirichlet-bc.dir/DependInfo.cmake "--color=" 489s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 489s make -f undocumented/sym-dirichlet-bc/cpp/CMakeFiles/demo_sym-dirichlet-bc.dir/build.make undocumented/sym-dirichlet-bc/cpp/CMakeFiles/demo_sym-dirichlet-bc.dir/build 489s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 489s [ 92%] Building CXX object undocumented/sym-dirichlet-bc/cpp/CMakeFiles/demo_sym-dirichlet-bc.dir/main.cpp.o 489s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/sym-dirichlet-bc/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/sym-dirichlet-bc/cpp/CMakeFiles/demo_sym-dirichlet-bc.dir/main.cpp.o -MF CMakeFiles/demo_sym-dirichlet-bc.dir/main.cpp.o.d -o CMakeFiles/demo_sym-dirichlet-bc.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/sym-dirichlet-bc/cpp/main.cpp 492s [ 93%] Linking CXX executable demo_poisson-disc 492s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/poisson-disc/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_poisson-disc.dir/link.txt --verbose=1 492s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG "CMakeFiles/demo_poisson-disc.dir/main.cpp.o" -o demo_poisson-disc -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 492s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 492s [ 93%] Built target demo_poisson-disc 492s make -f undocumented/time-series/cpp/CMakeFiles/demo_time-series.dir/build.make undocumented/time-series/cpp/CMakeFiles/demo_time-series.dir/depend 492s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 492s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/time-series/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/time-series/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/time-series/cpp/CMakeFiles/demo_time-series.dir/DependInfo.cmake "--color=" 492s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 492s make -f undocumented/time-series/cpp/CMakeFiles/demo_time-series.dir/build.make undocumented/time-series/cpp/CMakeFiles/demo_time-series.dir/build 492s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 492s [ 94%] Building CXX object undocumented/time-series/cpp/CMakeFiles/demo_time-series.dir/main.cpp.o 492s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/time-series/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/time-series/cpp/CMakeFiles/demo_time-series.dir/main.cpp.o -MF CMakeFiles/demo_time-series.dir/main.cpp.o.d -o CMakeFiles/demo_time-series.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/time-series/cpp/main.cpp 495s [ 95%] Linking CXX executable demo_submesh 495s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/submesh/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_submesh.dir/link.txt --verbose=1 495s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG CMakeFiles/demo_submesh.dir/main.cpp.o -o demo_submesh -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 495s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 495s [ 95%] Built target demo_submesh 495s make -f undocumented/waveguide/cpp/CMakeFiles/demo_waveguide.dir/build.make undocumented/waveguide/cpp/CMakeFiles/demo_waveguide.dir/depend 495s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 495s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/waveguide/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/waveguide/cpp /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/waveguide/cpp/CMakeFiles/demo_waveguide.dir/DependInfo.cmake "--color=" 495s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 495s make -f undocumented/waveguide/cpp/CMakeFiles/demo_waveguide.dir/build.make undocumented/waveguide/cpp/CMakeFiles/demo_waveguide.dir/build 495s make[2]: Entering directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 495s [ 96%] Building CXX object undocumented/waveguide/cpp/CMakeFiles/demo_waveguide.dir/main.cpp.o 495s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/waveguide/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/aarch64-linux-gnu/openmpi/include -isystem /usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/waveguide/cpp/CMakeFiles/demo_waveguide.dir/main.cpp.o -MF CMakeFiles/demo_waveguide.dir/main.cpp.o.d -o CMakeFiles/demo_waveguide.dir/main.cpp.o -c /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/waveguide/cpp/main.cpp 498s [ 97%] Linking CXX executable demo_spatial-coordinates 498s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/spatial-coordinates/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_spatial-coordinates.dir/link.txt --verbose=1 498s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG "CMakeFiles/demo_spatial-coordinates.dir/main.cpp.o" -o demo_spatial-coordinates -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 498s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 498s [ 97%] Built target demo_spatial-coordinates 500s [ 98%] Linking CXX executable demo_sym-dirichlet-bc 500s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/sym-dirichlet-bc/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_sym-dirichlet-bc.dir/link.txt --verbose=1 500s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG "CMakeFiles/demo_sym-dirichlet-bc.dir/main.cpp.o" -o demo_sym-dirichlet-bc -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 500s [ 99%] Linking CXX executable demo_time-series 500s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/time-series/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_time-series.dir/link.txt --verbose=1 500s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG "CMakeFiles/demo_time-series.dir/main.cpp.o" -o demo_time-series -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 500s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 500s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 500s [ 99%] Built target demo_time-series 500s [ 99%] Built target demo_sym-dirichlet-bc 510s [100%] Linking CXX executable demo_waveguide 510s cd /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/undocumented/waveguide/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_waveguide.dir/link.txt --verbose=1 510s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG CMakeFiles/demo_waveguide.dir/main.cpp.o -o demo_waveguide -Wl,-rpath,/usr/lib/aarch64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib:/usr/lib/aarch64-linux-gnu/openmpi/lib /usr/lib/aarch64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/aarch64-linux-gnu/libboost_timer.so /usr/lib/aarch64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/aarch64-linux-gnu/libcrypto.so /usr/lib/aarch64-linux-gnu/libcurl.so /usr/lib/aarch64-linux-gnu/libsz.so /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi_cxx.so /usr/lib/aarch64-linux-gnu/openmpi/lib/libmpi.so 511s make[2]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 511s [100%] Built target demo_waveguide 511s make[1]: Leaving directory '/tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo' 511s /usr/bin/cmake -E cmake_progress_start /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo/CMakeFiles 0 511s running C++ demos (serial) 511s Test project /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo 511s Start 2: demo_spatial-coordinates_serial 511s Start 4: demo_auto-adaptive-navier-stokes_serial 511s Start 6: demo_poisson1D-in-2D_serial 511s Start 8: demo_functional_serial 511s 1/49 Test #8: demo_functional_serial .................... Passed 0.17 sec 511s Start 10: demo_multimesh-poisson_serial 511s 2/49 Test #6: demo_poisson1D-in-2D_serial ............... Passed 0.18 sec 511s Start 12: demo_parallel-refinement_serial 511s 3/49 Test #2: demo_spatial-coordinates_serial ........... Passed 0.22 sec 511s Start 14: demo_elastodynamics_serial 511s 4/49 Test #12: demo_parallel-refinement_serial ........... Passed 0.18 sec 511s Start 16: demo_lift-drag_serial 512s 5/49 Test #16: demo_lift-drag_serial ..................... Passed 0.19 sec 512s Start 18: demo_poisson-disc_serial 512s 6/49 Test #18: demo_poisson-disc_serial .................. Passed 0.29 sec 512s Start 20: demo_poisson1D_serial 512s 7/49 Test #20: demo_poisson1D_serial ..................... Passed 0.17 sec 512s Start 22: demo_meshfunction-refinement_serial 512s 8/49 Test #22: demo_meshfunction-refinement_serial ....... Passed 0.17 sec 512s Start 24: demo_block-matrix_serial 512s 9/49 Test #24: demo_block-matrix_serial .................. Passed 0.18 sec 512s Start 26: demo_contact-vi-snes_serial 513s 10/49 Test #26: demo_contact-vi-snes_serial ............... Passed 0.50 sec 513s Start 28: demo_submesh_serial 513s 11/49 Test #10: demo_multimesh-poisson_serial ............. Passed 1.74 sec 513s Start 30: demo_gmg-poisson_serial 513s 12/49 Test #28: demo_submesh_serial ....................... Passed 0.21 sec 513s Start 32: demo_ale_serial 513s 13/49 Test #30: demo_gmg-poisson_serial ................... Passed 0.24 sec 513s Start 34: demo_time-series_serial 513s 14/49 Test #32: demo_ale_serial ........................... Passed 0.20 sec 513s Start 36: demo_conditional_serial 513s 15/49 Test #34: demo_time-series_serial ................... Passed 0.20 sec 513s Start 38: demo_extrapolation_serial 513s 16/49 Test #38: demo_extrapolation_serial ................. Passed 0.19 sec 513s Start 40: demo_waveguide_serial 514s 17/49 Test #36: demo_conditional_serial ................... Passed 0.32 sec 514s Start 42: demo_curl-curl_serial 514s 18/49 Test #40: demo_waveguide_serial ..................... Passed 0.54 sec 514s Start 44: demo_advection-diffusion_serial 515s 19/49 Test #44: demo_advection-diffusion_serial ........... Passed 0.69 sec 515s Start 46: demo_mesh-quality_serial 515s 20/49 Test #46: demo_mesh-quality_serial .................. Passed 0.17 sec 515s Start 48: demo_parameters_serial 515s 21/49 Test #48: demo_parameters_serial .................... Passed 0.16 sec 515s Start 50: demo_contact-vi-tao_serial 515s 22/49 Test #50: demo_contact-vi-tao_serial ................ Passed 0.26 sec 515s Start 52: demo_dg-advection-diffusion_serial 516s 23/49 Test #52: demo_dg-advection-diffusion_serial ........ Passed 0.45 sec 516s Start 54: demo_multimesh-stokes_serial 516s 24/49 Test #54: demo_multimesh-stokes_serial .............. Passed 0.33 sec 516s Start 56: demo_nonmatching-projection_serial 516s 25/49 Test #56: demo_nonmatching-projection_serial ........ Passed 0.36 sec 516s Start 58: demo_dg-poisson_serial 517s 26/49 Test #58: demo_dg-poisson_serial .................... Passed 0.19 sec 517s Start 60: demo_refinement_serial 517s 27/49 Test #60: demo_refinement_serial .................... Passed 0.19 sec 517s Start 62: demo_sym-dirichlet-bc_serial 517s 28/49 Test #42: demo_curl-curl_serial ..................... Passed 3.33 sec 517s Start 64: demo_elasticity_serial 518s 29/49 Test #62: demo_sym-dirichlet-bc_serial .............. Passed 1.54 sec 518s Start 66: demo_eval_serial 519s 30/49 Test #66: demo_eval_serial .......................... Passed 0.36 sec 519s Start 68: demo_built-in-meshes_serial 519s 31/49 Test #68: demo_built-in-meshes_serial ............... Passed 0.17 sec 519s Start 70: demo_stokes-iterative_serial 520s 32/49 Test #64: demo_elasticity_serial .................... Passed 3.00 sec 520s Start 72: demo_poisson_serial 520s 33/49 Test #72: demo_poisson_serial ....................... Passed 0.18 sec 520s Start 74: demo_periodic_serial 520s 34/49 Test #74: demo_periodic_serial ...................... Passed 0.18 sec 520s Start 76: demo_subdomains_serial 520s 35/49 Test #76: demo_subdomains_serial .................... Passed 0.22 sec 520s Start 78: demo_nonlinear-poisson_serial 520s 36/49 Test #4: demo_auto-adaptive-navier-stokes_serial ... Passed 9.50 sec 520s Start 79: demo_hyperelasticity_serial 521s 37/49 Test #78: demo_nonlinear-poisson_serial ............. Passed 0.19 sec 521s Start 81: demo_bcs_serial 521s 38/49 Test #81: demo_bcs_serial ........................... Passed 0.48 sec 521s Start 83: demo_navier-stokes_serial 523s 39/49 Test #83: demo_navier-stokes_serial ................. Passed 1.78 sec 523s Start 85: demo_singular-poisson_serial 523s 40/49 Test #85: demo_singular-poisson_serial .............. Passed 0.31 sec 523s Start 87: demo_biharmonic_serial 523s 41/49 Test #87: demo_biharmonic_serial .................... Passed 0.25 sec 523s Start 89: demo_nonmatching-interpolation_serial 524s 42/49 Test #89: demo_nonmatching-interpolation_serial ..... Passed 0.23 sec 524s Start 91: demo_eigenvalue_serial 524s 43/49 Test #91: demo_eigenvalue_serial .................... Passed 0.26 sec 524s Start 92: demo_mixed-poisson_serial 524s 44/49 Test #92: demo_mixed-poisson_serial ................. Passed 0.24 sec 524s Start 94: demo_neumann-poisson_serial 524s 45/49 Test #94: demo_neumann-poisson_serial ............... Passed 0.23 sec 524s Start 96: demo_auto-adaptive-poisson_serial 525s 46/49 Test #14: demo_elastodynamics_serial ................ Passed 14.02 sec 527s 47/49 Test #96: demo_auto-adaptive-poisson_serial ......... Passed 2.86 sec 542s 48/49 Test #79: demo_hyperelasticity_serial ............... Passed 21.88 sec 551s 49/49 Test #70: demo_stokes-iterative_serial .............. Passed 32.21 sec 551s 551s 100% tests passed, 0 tests failed out of 49 551s 551s Total Test time (real) = 40.19 sec 551s running C++ demos (MPI) 551s available CPUs: NPROC=4, of which we use N_CPU=4 551s using 3 processes per demo (i.e. run 2 demo[s] at once) 551s Test project /tmp/autopkgtest.ShOyTP/build.fwM/src/dolfin-demo 551s Start 1: demo_spatial-coordinates_mpi 551s Start 3: demo_auto-adaptive-navier-stokes_mpi 551s 1/47 Test #3: demo_auto-adaptive-navier-stokes_mpi ... Passed 0.22 sec 551s Start 5: demo_poisson1D-in-2D_mpi 552s 2/47 Test #5: demo_poisson1D-in-2D_mpi ............... Passed 0.17 sec 552s Start 7: demo_functional_mpi 552s 3/47 Test #1: demo_spatial-coordinates_mpi ........... Passed 0.61 sec 552s Start 9: demo_multimesh-poisson_mpi 552s 4/47 Test #9: demo_multimesh-poisson_mpi ............. Passed 0.18 sec 552s Start 11: demo_parallel-refinement_mpi 552s 5/47 Test #7: demo_functional_mpi .................... Passed 0.45 sec 552s Start 13: demo_elastodynamics_mpi 553s 6/47 Test #11: demo_parallel-refinement_mpi ........... Passed 0.78 sec 553s Start 15: demo_lift-drag_mpi 554s 7/47 Test #15: demo_lift-drag_mpi ..................... Passed 1.21 sec 554s Start 17: demo_poisson-disc_mpi 554s 8/47 Test #17: demo_poisson-disc_mpi .................. Passed 0.22 sec 554s Start 19: demo_poisson1D_mpi 556s 9/47 Test #19: demo_poisson1D_mpi ..................... Passed 2.00 sec 556s Start 21: demo_meshfunction-refinement_mpi 556s 10/47 Test #21: demo_meshfunction-refinement_mpi ....... Passed 0.22 sec 556s Start 23: demo_block-matrix_mpi 557s 11/47 Test #23: demo_block-matrix_mpi .................. Passed 1.10 sec 557s Start 25: demo_contact-vi-snes_mpi 562s 12/47 Test #25: demo_contact-vi-snes_mpi ............... Passed 4.20 sec 562s Start 27: demo_submesh_mpi 562s 13/47 Test #27: demo_submesh_mpi ....................... Passed 0.23 sec 562s Start 29: demo_gmg-poisson_mpi 564s 14/47 Test #29: demo_gmg-poisson_mpi ................... Passed 2.61 sec 564s Start 31: demo_ale_mpi 570s 15/47 Test #31: demo_ale_mpi ........................... Passed 5.54 sec 570s Start 33: demo_time-series_mpi 570s 16/47 Test #33: demo_time-series_mpi ................... Passed 0.24 sec 570s Start 35: demo_conditional_mpi 573s 17/47 Test #35: demo_conditional_mpi ................... Passed 2.92 sec 573s Start 37: demo_extrapolation_mpi 573s 18/47 Test #37: demo_extrapolation_mpi ................. Passed 0.24 sec 573s Start 39: demo_waveguide_mpi 575s 19/47 Test #39: demo_waveguide_mpi ..................... Passed 1.84 sec 575s Start 41: demo_curl-curl_mpi 596s 20/47 Test #41: demo_curl-curl_mpi ..................... Passed 20.34 sec 596s Start 43: demo_advection-diffusion_mpi 602s 21/47 Test #43: demo_advection-diffusion_mpi ........... Passed 6.55 sec 602s Start 45: demo_mesh-quality_mpi 604s 22/47 Test #45: demo_mesh-quality_mpi .................. Passed 1.33 sec 604s Start 47: demo_parameters_mpi 604s 23/47 Test #47: demo_parameters_mpi .................... Passed 0.25 sec 604s Start 49: demo_contact-vi-tao_mpi 613s 24/47 Test #13: demo_elastodynamics_mpi ................ Passed 60.76 sec 613s Start 51: demo_dg-advection-diffusion_mpi 613s 25/47 Test #49: demo_contact-vi-tao_mpi ................ Passed 9.00 sec 613s Start 53: demo_multimesh-stokes_mpi 613s 26/47 Test #53: demo_multimesh-stokes_mpi .............. Passed 0.25 sec 613s Start 55: demo_nonmatching-projection_mpi 613s 27/47 Test #55: demo_nonmatching-projection_mpi ........ Passed 0.18 sec 613s Start 57: demo_dg-poisson_mpi 614s 28/47 Test #51: demo_dg-advection-diffusion_mpi ........ Passed 0.98 sec 614s Start 59: demo_refinement_mpi 614s 29/47 Test #57: demo_dg-poisson_mpi .................... Passed 0.64 sec 614s Start 61: demo_sym-dirichlet-bc_mpi 618s 30/47 Test #59: demo_refinement_mpi .................... Passed 4.25 sec 618s Start 63: demo_elasticity_mpi 630s 31/47 Test #63: demo_elasticity_mpi .................... Passed 11.53 sec 630s Start 65: demo_eval_mpi 630s 32/47 Test #65: demo_eval_mpi .......................... Passed 0.27 sec 630s Start 67: demo_built-in-meshes_mpi 630s 33/47 Test #61: demo_sym-dirichlet-bc_mpi .............. Passed 16.04 sec 630s Start 69: demo_stokes-iterative_mpi 636s 34/47 Test #67: demo_built-in-meshes_mpi ............... Passed 6.31 sec 636s Start 71: demo_poisson_mpi 638s 35/47 Test #71: demo_poisson_mpi ....................... Passed 2.33 sec 638s Start 73: demo_periodic_mpi 639s 36/47 Test #73: demo_periodic_mpi ...................... Passed 1.04 sec 639s Start 75: demo_subdomains_mpi 640s 37/47 Test #75: demo_subdomains_mpi .................... Passed 0.28 sec 640s Start 77: demo_nonlinear-poisson_mpi 645s 38/47 Test #77: demo_nonlinear-poisson_mpi ............. Passed 4.86 sec 645s Start 80: demo_bcs_mpi 648s 39/47 Test #69: demo_stokes-iterative_mpi .............. Passed 17.74 sec 648s Start 82: demo_navier-stokes_mpi 651s 40/47 Test #82: demo_navier-stokes_mpi ................. Passed 2.93 sec 651s Start 84: demo_singular-poisson_mpi 651s 41/47 Test #80: demo_bcs_mpi ........................... Passed 6.24 sec 651s Start 86: demo_biharmonic_mpi 652s 42/47 Test #86: demo_biharmonic_mpi .................... Passed 0.99 sec 652s Start 88: demo_nonmatching-interpolation_mpi 652s 43/47 Test #88: demo_nonmatching-interpolation_mpi ..... Passed 0.17 sec 652s Start 90: demo_eigenvalue_mpi 653s 44/47 Test #90: demo_eigenvalue_mpi .................... Passed 0.88 sec 653s Start 93: demo_neumann-poisson_mpi 654s 45/47 Test #93: demo_neumann-poisson_mpi ............... Passed 0.98 sec 654s Start 95: demo_auto-adaptive-poisson_mpi 654s 46/47 Test #95: demo_auto-adaptive-poisson_mpi ......... Passed 0.18 sec 655s 47/47 Test #84: demo_singular-poisson_mpi .............. Passed 4.15 sec 655s 655s 100% tests passed, 0 tests failed out of 47 655s 655s Total Test time (real) = 103.55 sec 655s autopkgtest [09:16:33]: test test-dolfin-cpp: -----------------------] 656s autopkgtest [09:16:34]: test test-dolfin-cpp: - - - - - - - - - - results - - - - - - - - - - 656s test-dolfin-cpp PASS 656s autopkgtest [09:16:34]: test test-dolfin-python-unittest: preparing testbed 657s Reading package lists... 658s Building dependency tree... 658s Reading state information... 658s Starting pkgProblemResolver with broken count: 0 658s Starting 2 pkgProblemResolver with broken count: 0 658s Done 659s The following additional packages will be installed: 659s blt fonts-lyx liblbfgsb0 liblcms2-2 libopenjp2-7 libqhull-r8.0 libtcl8.6 659s libtk8.6 libwebpdemux2 libwebpmux3 libxft2 libxslt1.1 libxss1 659s python-matplotlib-data python3-appdirs python3-brotli python3-contourpy 659s python3-cycler python3-dateutil python3-decorator python3-fonttools 659s python3-fs python3-iniconfig python3-kiwisolver python3-lxml python3-lz4 659s python3-matplotlib python3-pil python3-pil.imagetk python3-pluggy 659s python3-pytest python3-scipy python3-tk python3-tz python3-ufolib2 659s python3.12-tk python3.13-tk tk8.6-blt2.5 unicode-data 659s Suggested packages: 659s blt-demo liblcms2-utils tcl8.6 tk8.6 python-cycler-doc python-lxml-doc 659s cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 659s inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi 659s python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado 659s texlive-extra-utils texlive-latex-extra python-pil-doc python-scipy-doc tix 659s python3-tk-dbg 659s Recommended packages: 659s python3-bs4 python3-cssselect python3-html5lib python3-olefile 659s The following NEW packages will be installed: 659s autopkgtest-satdep blt fonts-lyx liblbfgsb0 liblcms2-2 libopenjp2-7 659s libqhull-r8.0 libtcl8.6 libtk8.6 libwebpdemux2 libwebpmux3 libxft2 659s libxslt1.1 libxss1 python-matplotlib-data python3-appdirs python3-brotli 659s python3-contourpy python3-cycler python3-dateutil python3-decorator 659s python3-fonttools python3-fs python3-iniconfig python3-kiwisolver 659s python3-lxml python3-lz4 python3-matplotlib python3-pil python3-pil.imagetk 659s python3-pluggy python3-pytest python3-scipy python3-tk python3-tz 659s python3-ufolib2 python3.12-tk python3.13-tk tk8.6-blt2.5 unicode-data 659s 0 upgraded, 40 newly installed, 0 to remove and 0 not upgraded. 659s Need to get 40.5 MB/40.5 MB of archives. 659s After this operation, 165 MB of additional disk space will be used. 659s Get:1 /tmp/autopkgtest.ShOyTP/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [1220 B] 659s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [987 kB] 660s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 660s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 660s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.15-1 [774 kB] 660s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7build1 [618 kB] 660s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 blt arm64 2.5.3+dfsg-7build1 [4840 B] 660s Get:8 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lyx all 2.4.2.1-1 [171 kB] 660s Get:9 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 660s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 660s Get:11 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 660s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [12.3 kB] 660s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpmux3 arm64 1.4.0-0.1 [25.1 kB] 660s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libxslt1.1 arm64 1.1.39-0exp1ubuntu1 [167 kB] 660s Get:15 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-matplotlib-data all 3.8.3-3 [2928 kB] 660s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-appdirs all 1.4.4-4 [10.9 kB] 660s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-brotli arm64 1.1.0-2build2 [340 kB] 660s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-contourpy arm64 1.3.0-2 [179 kB] 660s Get:19 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-cycler all 0.12.1-1 [9716 B] 660s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-2 [80.3 kB] 660s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 660s Get:22 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.13.1-5 [16.3 MB] 661s Get:23 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 661s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tz all 2024.1-2 [31.4 kB] 661s Get:25 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fs all 2.4.16-4 [91.3 kB] 661s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-lxml arm64 5.3.0-1 [1205 kB] 662s Get:27 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-lz4 arm64 4.0.2+dfsg-1build4 [26.7 kB] 662s Get:28 http://ftpmaster.internal/ubuntu plucky/universe arm64 unicode-data all 15.1.0-1 [8878 kB] 662s Get:29 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fonttools arm64 4.46.0-1build2 [1398 kB] 663s Get:30 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 663s Get:31 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-kiwisolver arm64 1.4.7-2 [50.4 kB] 663s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libopenjp2-7 arm64 2.5.0-2ubuntu1 [182 kB] 663s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pil arm64 10.4.0-1ubuntu1 [456 kB] 663s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-tk arm64 3.12.7-3 [115 kB] 663s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-tk arm64 3.13.0-2 [105 kB] 663s Get:36 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-tk arm64 3.12.7-1 [9752 B] 663s Get:37 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pil.imagetk arm64 10.4.0-1ubuntu1 [9504 B] 663s Get:38 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-matplotlib arm64 3.8.3-3 [4515 kB] 663s Get:39 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 663s Get:40 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB] 663s Fetched 40.5 MB in 4s (9965 kB/s) 664s Selecting previously unselected package libtcl8.6:arm64. 664s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 129832 files and directories currently installed.) 664s Preparing to unpack .../00-libtcl8.6_8.6.15+dfsg-2_arm64.deb ... 664s Unpacking libtcl8.6:arm64 (8.6.15+dfsg-2) ... 664s Selecting previously unselected package libxft2:arm64. 664s Preparing to unpack .../01-libxft2_2.3.6-1build1_arm64.deb ... 664s Unpacking libxft2:arm64 (2.3.6-1build1) ... 664s Selecting previously unselected package libxss1:arm64. 664s Preparing to unpack .../02-libxss1_1%3a1.2.3-1build3_arm64.deb ... 664s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 664s Selecting previously unselected package libtk8.6:arm64. 664s Preparing to unpack .../03-libtk8.6_8.6.15-1_arm64.deb ... 664s Unpacking libtk8.6:arm64 (8.6.15-1) ... 664s Selecting previously unselected package tk8.6-blt2.5. 664s Preparing to unpack .../04-tk8.6-blt2.5_2.5.3+dfsg-7build1_arm64.deb ... 664s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 664s Selecting previously unselected package blt. 664s Preparing to unpack .../05-blt_2.5.3+dfsg-7build1_arm64.deb ... 664s Unpacking blt (2.5.3+dfsg-7build1) ... 664s Selecting previously unselected package fonts-lyx. 664s Preparing to unpack .../06-fonts-lyx_2.4.2.1-1_all.deb ... 664s Unpacking fonts-lyx (2.4.2.1-1) ... 664s Selecting previously unselected package liblbfgsb0:arm64. 664s Preparing to unpack .../07-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 664s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 664s Selecting previously unselected package liblcms2-2:arm64. 664s Preparing to unpack .../08-liblcms2-2_2.16-2_arm64.deb ... 664s Unpacking liblcms2-2:arm64 (2.16-2) ... 664s Selecting previously unselected package libqhull-r8.0:arm64. 664s Preparing to unpack .../09-libqhull-r8.0_2020.2-6build1_arm64.deb ... 664s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ... 664s Selecting previously unselected package libwebpdemux2:arm64. 664s Preparing to unpack .../10-libwebpdemux2_1.4.0-0.1_arm64.deb ... 664s Unpacking libwebpdemux2:arm64 (1.4.0-0.1) ... 664s Selecting previously unselected package libwebpmux3:arm64. 664s Preparing to unpack .../11-libwebpmux3_1.4.0-0.1_arm64.deb ... 664s Unpacking libwebpmux3:arm64 (1.4.0-0.1) ... 664s Selecting previously unselected package libxslt1.1:arm64. 664s Preparing to unpack .../12-libxslt1.1_1.1.39-0exp1ubuntu1_arm64.deb ... 664s Unpacking libxslt1.1:arm64 (1.1.39-0exp1ubuntu1) ... 664s Selecting previously unselected package python-matplotlib-data. 664s Preparing to unpack .../13-python-matplotlib-data_3.8.3-3_all.deb ... 664s Unpacking python-matplotlib-data (3.8.3-3) ... 664s Selecting previously unselected package python3-appdirs. 664s Preparing to unpack .../14-python3-appdirs_1.4.4-4_all.deb ... 664s Unpacking python3-appdirs (1.4.4-4) ... 664s Selecting previously unselected package python3-brotli. 664s Preparing to unpack .../15-python3-brotli_1.1.0-2build2_arm64.deb ... 664s Unpacking python3-brotli (1.1.0-2build2) ... 665s Selecting previously unselected package python3-contourpy. 665s Preparing to unpack .../16-python3-contourpy_1.3.0-2_arm64.deb ... 665s Unpacking python3-contourpy (1.3.0-2) ... 665s Selecting previously unselected package python3-cycler. 665s Preparing to unpack .../17-python3-cycler_0.12.1-1_all.deb ... 665s Unpacking python3-cycler (0.12.1-1) ... 665s Selecting previously unselected package python3-dateutil. 665s Preparing to unpack .../18-python3-dateutil_2.9.0-2_all.deb ... 665s Unpacking python3-dateutil (2.9.0-2) ... 665s Selecting previously unselected package python3-decorator. 665s Preparing to unpack .../19-python3-decorator_5.1.1-5_all.deb ... 665s Unpacking python3-decorator (5.1.1-5) ... 665s Selecting previously unselected package python3-scipy. 665s Preparing to unpack .../20-python3-scipy_1.13.1-5_arm64.deb ... 665s Unpacking python3-scipy (1.13.1-5) ... 665s Selecting previously unselected package python3-ufolib2. 665s Preparing to unpack .../21-python3-ufolib2_0.16.1+dfsg1-1_all.deb ... 665s Unpacking python3-ufolib2 (0.16.1+dfsg1-1) ... 665s Selecting previously unselected package python3-tz. 665s Preparing to unpack .../22-python3-tz_2024.1-2_all.deb ... 665s Unpacking python3-tz (2024.1-2) ... 665s Selecting previously unselected package python3-fs. 665s Preparing to unpack .../23-python3-fs_2.4.16-4_all.deb ... 665s Unpacking python3-fs (2.4.16-4) ... 665s Selecting previously unselected package python3-lxml:arm64. 665s Preparing to unpack .../24-python3-lxml_5.3.0-1_arm64.deb ... 665s Unpacking python3-lxml:arm64 (5.3.0-1) ... 665s Selecting previously unselected package python3-lz4. 665s Preparing to unpack .../25-python3-lz4_4.0.2+dfsg-1build4_arm64.deb ... 665s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 665s Selecting previously unselected package unicode-data. 666s Preparing to unpack .../26-unicode-data_15.1.0-1_all.deb ... 666s Unpacking unicode-data (15.1.0-1) ... 666s Selecting previously unselected package python3-fonttools. 666s Preparing to unpack .../27-python3-fonttools_4.46.0-1build2_arm64.deb ... 666s Unpacking python3-fonttools (4.46.0-1build2) ... 666s Selecting previously unselected package python3-iniconfig. 666s Preparing to unpack .../28-python3-iniconfig_1.1.1-2_all.deb ... 666s Unpacking python3-iniconfig (1.1.1-2) ... 666s Selecting previously unselected package python3-kiwisolver. 666s Preparing to unpack .../29-python3-kiwisolver_1.4.7-2_arm64.deb ... 666s Unpacking python3-kiwisolver (1.4.7-2) ... 666s Selecting previously unselected package libopenjp2-7:arm64. 666s Preparing to unpack .../30-libopenjp2-7_2.5.0-2ubuntu1_arm64.deb ... 666s Unpacking libopenjp2-7:arm64 (2.5.0-2ubuntu1) ... 666s Selecting previously unselected package python3-pil:arm64. 666s Preparing to unpack .../31-python3-pil_10.4.0-1ubuntu1_arm64.deb ... 666s Unpacking python3-pil:arm64 (10.4.0-1ubuntu1) ... 666s Selecting previously unselected package python3.12-tk. 666s Preparing to unpack .../32-python3.12-tk_3.12.7-3_arm64.deb ... 666s Unpacking python3.12-tk (3.12.7-3) ... 666s Selecting previously unselected package python3.13-tk. 666s Preparing to unpack .../33-python3.13-tk_3.13.0-2_arm64.deb ... 666s Unpacking python3.13-tk (3.13.0-2) ... 666s Selecting previously unselected package python3-tk:arm64. 666s Preparing to unpack .../34-python3-tk_3.12.7-1_arm64.deb ... 666s Unpacking python3-tk:arm64 (3.12.7-1) ... 666s Selecting previously unselected package python3-pil.imagetk:arm64. 666s Preparing to unpack .../35-python3-pil.imagetk_10.4.0-1ubuntu1_arm64.deb ... 666s Unpacking python3-pil.imagetk:arm64 (10.4.0-1ubuntu1) ... 666s Selecting previously unselected package python3-matplotlib. 666s Preparing to unpack .../36-python3-matplotlib_3.8.3-3_arm64.deb ... 666s Unpacking python3-matplotlib (3.8.3-3) ... 666s Selecting previously unselected package python3-pluggy. 666s Preparing to unpack .../37-python3-pluggy_1.5.0-1_all.deb ... 666s Unpacking python3-pluggy (1.5.0-1) ... 666s Selecting previously unselected package python3-pytest. 667s Preparing to unpack .../38-python3-pytest_8.3.3-1_all.deb ... 667s Unpacking python3-pytest (8.3.3-1) ... 667s Selecting previously unselected package autopkgtest-satdep. 667s Preparing to unpack .../39-2-autopkgtest-satdep.deb ... 667s Unpacking autopkgtest-satdep (0) ... 667s Setting up liblcms2-2:arm64 (2.16-2) ... 667s Setting up python3-iniconfig (1.1.1-2) ... 667s Setting up libxft2:arm64 (2.3.6-1build1) ... 667s Setting up python3-lz4 (4.0.2+dfsg-1build4) ... 667s Setting up fonts-lyx (2.4.2.1-1) ... 667s Setting up libwebpdemux2:arm64 (1.4.0-0.1) ... 667s Setting up libqhull-r8.0:arm64 (2020.2-6build1) ... 667s Setting up python3-tz (2024.1-2) ... 667s Setting up unicode-data (15.1.0-1) ... 667s Setting up python3-decorator (5.1.1-5) ... 667s Setting up python3-brotli (1.1.0-2build2) ... 668s Setting up python3-cycler (0.12.1-1) ... 668s Setting up python3-kiwisolver (1.4.7-2) ... 668s Setting up libtcl8.6:arm64 (8.6.15+dfsg-2) ... 668s Setting up python3-pluggy (1.5.0-1) ... 668s Setting up libxslt1.1:arm64 (1.1.39-0exp1ubuntu1) ... 668s Setting up libopenjp2-7:arm64 (2.5.0-2ubuntu1) ... 668s Setting up python3-dateutil (2.9.0-2) ... 668s Setting up python3-contourpy (1.3.0-2) ... 669s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 669s Setting up python-matplotlib-data (3.8.3-3) ... 669s Setting up libwebpmux3:arm64 (1.4.0-0.1) ... 669s Setting up python3-appdirs (1.4.4-4) ... 669s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 669s Setting up python3-scipy (1.13.1-5) ... 676s Setting up python3-pytest (8.3.3-1) ... 677s Setting up libtk8.6:arm64 (8.6.15-1) ... 677s Setting up python3.12-tk (3.12.7-3) ... 677s Setting up python3.13-tk (3.13.0-2) ... 677s Setting up python3-fs (2.4.16-4) ... 678s Setting up python3-pil:arm64 (10.4.0-1ubuntu1) ... 678s Setting up python3-lxml:arm64 (5.3.0-1) ... 679s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 679s Setting up blt (2.5.3+dfsg-7build1) ... 679s Setting up python3-tk:arm64 (3.12.7-1) ... 679s Setting up python3-pil.imagetk:arm64 (10.4.0-1ubuntu1) ... 679s Setting up python3-fonttools (4.46.0-1build2) ... 681s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... 681s Setting up python3-matplotlib (3.8.3-3) ... 685s Setting up autopkgtest-satdep (0) ... 685s Processing triggers for libc-bin (2.40-1ubuntu3) ... 685s Processing triggers for man-db (2.12.1-3) ... 685s Processing triggers for fontconfig (2.15.0-1.1ubuntu2) ... 690s (Reading database ... 133615 files and directories currently installed.) 690s Removing autopkgtest-satdep (0) ... 691s autopkgtest [09:17:09]: test test-dolfin-python-unittest: [----------------------- 691s skipping tests with SKIP_TESTS=not ( test_compute_entity_collisions_2d or test_compute_entity_collisions_3d or test_meshes_on_diagonal or test_meshes_with_boundary_edge_overlap_2d or test_volume_2d ) 691s === python 3.13 unit test (serial) === 691s ImportError while loading conftest '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/test/unit/conftest.py'. 691s python/test/unit/conftest.py:3: in 691s from dolfin import MPI 691s /usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py:44: in 691s pusimp.prevent_user_site_imports( 691s /usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py:189: in prevent_user_site_imports 691s raise ImportError(import_error) 691s E ImportError: pusimp has detected the following problems with dolfin dependencies: 691s E 1) Broken dependencies: 691s E * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 691s E its source directory; please exit the numpy source tree, and relaunch 691s E your python interpreter from there.'. 691s E * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 691s E its source directory; please exit the numpy source tree, and relaunch 691s E your python interpreter from there.'. 691s E * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 691s E its source directory; please exit the numpy source tree, and relaunch 691s E your python interpreter from there.'. 691s E * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 691s E its source directory; please exit the numpy source tree, and relaunch 691s E your python interpreter from there.'. 691s E 691s E pusimp suggests to apply all of the following fixes: 691s E 1) To fix broken dependencies: 691s E * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 691s E * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 691s E * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 691s E * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 691s E 691s E You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 691s E If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 692s autopkgtest [09:17:10]: test test-dolfin-python-unittest: -----------------------] 692s test-dolfin-python-unittest FAIL non-zero exit status 4 692s autopkgtest [09:17:10]: test test-dolfin-python-unittest: - - - - - - - - - - results - - - - - - - - - - 692s autopkgtest [09:17:10]: test test-dolfin-python-unittest: - - - - - - - - - - stderr - - - - - - - - - - 692s ImportError while loading conftest '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/test/unit/conftest.py'. 692s python/test/unit/conftest.py:3: in 692s from dolfin import MPI 692s /usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py:44: in 692s pusimp.prevent_user_site_imports( 692s /usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py:189: in prevent_user_site_imports 692s raise ImportError(import_error) 692s E ImportError: pusimp has detected the following problems with dolfin dependencies: 692s E 1) Broken dependencies: 692s E * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 692s E its source directory; please exit the numpy source tree, and relaunch 692s E your python interpreter from there.'. 692s E * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 692s E its source directory; please exit the numpy source tree, and relaunch 692s E your python interpreter from there.'. 692s E * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 692s E its source directory; please exit the numpy source tree, and relaunch 692s E your python interpreter from there.'. 692s E * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 692s E its source directory; please exit the numpy source tree, and relaunch 692s E your python interpreter from there.'. 692s E 692s E pusimp suggests to apply all of the following fixes: 692s E 1) To fix broken dependencies: 692s E * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 692s E * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 692s E * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 692s E * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 692s E 692s E You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 692s E If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 693s autopkgtest [09:17:11]: test test-dolfin-python-demo: preparing testbed 694s Reading package lists... 695s Building dependency tree... 695s Reading state information... 695s Starting pkgProblemResolver with broken count: 0 695s Starting 2 pkgProblemResolver with broken count: 0 695s Done 696s The following NEW packages will be installed: 696s autopkgtest-satdep 696s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 696s Need to get 0 B/1220 B of archives. 696s After this operation, 0 B of additional disk space will be used. 696s Get:1 /tmp/autopkgtest.ShOyTP/3-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [1220 B] 696s Selecting previously unselected package autopkgtest-satdep. 696s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 133615 files and directories currently installed.) 696s Preparing to unpack .../3-autopkgtest-satdep.deb ... 696s Unpacking autopkgtest-satdep (0) ... 696s Setting up autopkgtest-satdep (0) ... 701s (Reading database ... 133615 files and directories currently installed.) 701s Removing autopkgtest-satdep (0) ... 702s autopkgtest [09:17:20]: test test-dolfin-python-demo: [----------------------- 702s skipping demos with SKIP_DEMOS=not ( cahn or hyperelasticity or elastodynamics or navier or elasticity ) 702s extract written to /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/built-in-meshes/demo_built-in-meshes.py 702s extract written to /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/stokes-iterative/demo_stokes-iterative.py 702s extract written to /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/maxwell-eigenvalues/demo_maxwell-eigenvalues.py 702s extract written to /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/poisson/demo_poisson.py 702s extract written to /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/elastodynamics/demo_elastodynamics.py 702s extract written to /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/nonlinear-poisson/demo_nonlinear-poisson.py 702s extract written to /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/hyperelasticity/demo_hyperelasticity.py 702s extract written to /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/singular-poisson/demo_singular-poisson.py 702s extract written to /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/biharmonic/demo_biharmonic.py 702s extract written to /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/nonmatching-interpolation/demo_nonmatching-interpolation.py 702s extract written to /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/eigenvalue/demo_eigenvalue.py 702s extract written to /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/mixed-poisson/demo_mixed-poisson.py 702s extract written to /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/neumann-poisson/demo_neumann-poisson.py 702s extract written to /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/cahn-hilliard/demo_cahn-hilliard.py 702s extract written to /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/auto-adaptive-poisson/demo_auto-adaptive-poisson.py 702s Converting rst files in in /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/built-in-meshes ... 702s Converting rst files in in /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/stokes-iterative ... 702s Converting rst files in in /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/maxwell-eigenvalues ... 702s Converting rst files in in /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/poisson ... 702s Converting rst files in in /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/elastodynamics ... 702s Converting rst files in in /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/nonlinear-poisson ... 702s Converting rst files in in /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/hyperelasticity ... 702s Converting rst files in in /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/singular-poisson ... 702s Converting rst files in in /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/biharmonic ... 702s Converting rst files in in /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/nonmatching-interpolation ... 702s Converting rst files in in /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/eigenvalue ... 702s Converting rst files in in /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/mixed-poisson ... 702s Converting rst files in in /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/neumann-poisson ... 702s Converting rst files in in /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/cahn-hilliard ... 702s Converting rst files in in /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/auto-adaptive-poisson ... 702s === python 3.13 demo test (serial) === 703s ============================= test session starts ============================== 703s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13 703s cachedir: .pytest_cache 703s rootdir: /tmp/autopkgtest.ShOyTP/build.fwM/src/python 703s plugins: typeguard-4.4.1 703s collecting ... collected 82 items / 6 deselected / 76 selected 703s 703s python/demo/test.py::test_demos[path0-demo_built-in-meshes.py] FAILED [ 1%] 703s python/demo/test.py::test_demos[path1-demo_stokes-iterative.py] FAILED [ 2%] 703s python/demo/test.py::test_demos[path2-demo_maxwell-eigenvalues.py] FAILED [ 3%] 704s python/demo/test.py::test_demos[path3-demo_poisson.py] FAILED [ 5%] 704s python/demo/test.py::test_demos[path5-demo_periodic.py] FAILED [ 6%] 704s python/demo/test.py::test_demos[path6-demo_subdomains.py] FAILED [ 7%] 704s python/demo/test.py::test_demos[path7-demo_stokes-mini.py] FAILED [ 9%] 704s python/demo/test.py::test_demos[path8-demo_stokes-taylor-hood.py] FAILED [ 10%] 704s python/demo/test.py::test_demos[path9-demo_nonlinear-poisson.py] FAILED [ 11%] 705s python/demo/test.py::test_demos[path12-demo_singular-poisson.py] FAILED [ 13%] 705s python/demo/test.py::test_demos[path13-demo_biharmonic.py] FAILED [ 14%] 705s python/demo/test.py::test_demos[path14-demo_nonmatching-interpolation.py] FAILED [ 15%] 705s python/demo/test.py::test_demos[path15-demo_eigenvalue.py] FAILED [ 17%] 705s python/demo/test.py::test_demos[path16-demo_mixed-poisson.py] FAILED [ 18%] 706s python/demo/test.py::test_demos[path17-demo_neumann-poisson.py] FAILED [ 19%] 706s python/demo/test.py::test_demos[path18-demo_subdomains-poisson.py] FAILED [ 21%] 706s python/demo/test.py::test_demos[path20-demo_auto-adaptive-poisson.py] FAILED [ 22%] 706s python/demo/test.py::test_demos[path21-demo_point-integral.py] FAILED [ 23%] 707s python/demo/test.py::test_demos[path22-demo_spatial-coordinates.py] FAILED [ 25%] 707s python/demo/test.py::test_demos[path23-demo_sub-function-assignment.py] FAILED [ 26%] 707s python/demo/test.py::test_demos[path24-demo_formsplitter.py] FAILED [ 27%] 707s python/demo/test.py::test_demos[path25-demo_coordinates.py] FAILED [ 28%] 707s python/demo/test.py::test_demos[path27-demo_projection-interpolation.py] FAILED [ 30%] 708s python/demo/test.py::test_demos[path28-demo_poisson1D-in-2D.py] FAILED [ 31%] 708s python/demo/test.py::test_demos[path29-demo_functional.py] FAILED [ 32%] 708s python/demo/test.py::test_demos[path30-demo_adaptive-poisson.py] FAILED [ 34%] 708s python/demo/test.py::test_demos[path31-demo_multimesh-poisson.py] FAILED [ 35%] 708s python/demo/test.py::test_demos[path32-demo_parallel-refinement.py] FAILED [ 36%] 709s python/demo/test.py::test_demos[path33-demo_optimization.py] FAILED [ 38%] 709s python/demo/test.py::test_demos[path34-demo_lift-drag.py] FAILED [ 39%] 709s python/demo/test.py::test_demos[path35-demo_block-assembly-2D2D.py] FAILED [ 40%] 709s python/demo/test.py::test_demos[path36-demo_block-assembly-2D2D-nonlinear.py] FAILED [ 42%] 710s python/demo/test.py::test_demos[path37-demo_mixedfunctionspace.py] FAILED [ 43%] 710s python/demo/test.py::test_demos[path38-demo_poisson-disc.py] FAILED [ 44%] 710s python/demo/test.py::test_demos[path39-demo_meshview-2D2D.py] FAILED [ 46%] 710s python/demo/test.py::test_demos[path40-demo_poisson1D.py] FAILED [ 47%] 710s python/demo/test.py::test_demos[path41-demo_special-functions.py] FAILED [ 48%] 711s python/demo/test.py::test_demos[path42-demo_mixed-poisson-sphere.py] FAILED [ 50%] 711s python/demo/test.py::test_demos[path43-demo_meshview-3D1D.py] FAILED [ 51%] 711s python/demo/test.py::test_demos[path44-demo_mplot.py] FAILED [ 52%] 711s python/demo/test.py::test_demos[path45-demo_multimesh_marking.py] FAILED [ 53%] 711s python/demo/test.py::test_demos[path46-demo_block-matrix.py] FAILED [ 55%] 712s python/demo/test.py::test_demos[path47-demo_contact-vi-snes.py] FAILED [ 56%] 712s python/demo/test.py::test_demos[path48-demo_submesh.py] FAILED [ 57%] 712s python/demo/test.py::test_demos[path49-demo_smoothing.py] FAILED [ 59%] 712s python/demo/test.py::test_demos[path50-demo_ale.py] FAILED [ 60%] 713s python/demo/test.py::test_demos[path51-demo_time-series.py] FAILED [ 61%] 713s python/demo/test.py::test_demos[path52-demo_conditional.py] FAILED [ 63%] 713s python/demo/test.py::test_demos[path53-demo_block-assembly-3D1D.py] FAILED [ 64%] 713s python/demo/test.py::test_demos[path54-demo_extrapolation.py] FAILED [ 65%] 713s python/demo/test.py::test_demos[path55-demo_overlapping-regions.py] FAILED [ 67%] 714s python/demo/test.py::test_demos[path56-demo_meshview-3D2D.py] FAILED [ 68%] 714s python/demo/test.py::test_demos[path57-demo_waveguide.py] FAILED [ 69%] 714s python/demo/test.py::test_demos[path58-demo_curl-curl.py] FAILED [ 71%] 714s python/demo/test.py::test_demos[path59-demo_advection-diffusion.py] FAILED [ 72%] 715s python/demo/test.py::test_demos[path60-demo_matnest.py] FAILED [ 73%] 715s python/demo/test.py::test_demos[path61-demo_elementplot.py] FAILED [ 75%] 715s python/demo/test.py::test_demos[path62-demo_multimesh-quadrature.py] FAILED [ 76%] 715s python/demo/test.py::test_demos[path63-demo_mesh-quality.py] FAILED [ 77%] 715s python/demo/test.py::test_demos[path64-demo_parameters.py] FAILED [ 78%] 716s python/demo/test.py::test_demos[path65-demo_contact-vi-tao.py] FAILED [ 80%] 716s python/demo/test.py::test_demos[path66-demo_interpolation.py] FAILED [ 81%] 716s python/demo/test.py::test_demos[path67-demo_meshview-3D3D.py] FAILED [ 82%] 716s python/demo/test.py::test_demos[path68-demo_dg-advection-diffusion.py] FAILED [ 84%] 717s python/demo/test.py::test_demos[path69-demo_timing.py] FAILED [ 85%] 717s python/demo/test.py::test_demos[path70-demo_multimesh-stokes.py] FAILED [ 86%] 717s python/demo/test.py::test_demos[path71-demo_ghost-mesh.py] FAILED [ 88%] 717s python/demo/test.py::test_demos[path72-demo_multistage-solver.py] FAILED [ 89%] 717s python/demo/test.py::test_demos[path73-demo_buckling-tao.py] FAILED [ 90%] 718s python/demo/test.py::test_demos[path74-demo_nonmatching-projection.py] FAILED [ 92%] 718s python/demo/test.py::test_demos[path75-demo_dg-poisson.py] FAILED [ 93%] 718s python/demo/test.py::test_demos[path76-demo_refinement.py] FAILED [ 94%] 718s python/demo/test.py::test_demos[path77-demo_sym-dirichlet-bc.py] FAILED [ 96%] 719s python/demo/test.py::test_demos[path78-demo_collision-detection.py] FAILED [ 97%] 719s python/demo/test.py::test_demos[path80-demo_eval.py] FAILED [ 98%] 719s python/demo/test.py::test_demos[path81-demo_block-assembly-3D2D.py] FAILED [100%] 719s 719s =================================== FAILURES =================================== 719s __________________ test_demos[path0-demo_built-in-meshes.py] ___________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/built-in-meshes') 719s name = 'demo_built-in-meshes.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_built-in-meshes.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/built-in-meshes', 'env': {'ADTTMP': '/tmp/autopk...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_built-in-meshes.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/built-in-meshes/demo_built-in-meshes.py", line 31, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s __________________ test_demos[path1-demo_stokes-iterative.py] __________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/stokes-iterative') 719s name = 'demo_stokes-iterative.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_stokes-iterative.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/stokes-iterative', 'env': {'ADTTMP': '/tmp/autop...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_stokes-iterative.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/stokes-iterative/demo_stokes-iterative.py", line 97, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ________________ test_demos[path2-demo_maxwell-eigenvalues.py] _________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/maxwell-eigenvalues') 719s name = 'demo_maxwell-eigenvalues.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_maxwell-eigenvalues.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/maxwell-eigenvalues', 'env': {'ADTTMP': '/tmp/au...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_maxwell-eigenvalues.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/maxwell-eigenvalues/demo_maxwell-eigenvalues.py", line 129, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ______________________ test_demos[path3-demo_poisson.py] _______________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/poisson') 719s name = 'demo_poisson.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_poisson.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/poisson', 'env': {'ADTTMP': '/tmp/autopkgtest.Sh...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_poisson.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/poisson/demo_poisson.py", line 79, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ______________________ test_demos[path5-demo_periodic.py] ______________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/periodic') 719s name = 'demo_periodic.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_periodic.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/periodic', 'env': {'ADTTMP': '/tmp/autopkgtest.S...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_periodic.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 719s from . import multiarray 719s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 719s from . import overrides 719s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 719s from numpy.core._multiarray_umath import ( 719s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 719s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 719s 719s During handling of the above exception, another exception occurred: 719s 719s Traceback (most recent call last): 719s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 719s from numpy.__config__ import show as show_config 719s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 719s from numpy.core._multiarray_umath import ( 719s ...<3 lines>... 719s ) 719s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 719s raise ImportError(msg) 719s ImportError: 719s 719s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 719s 719s Importing the numpy C-extensions failed. This error can happen for 719s many reasons, often due to issues with your setup or how NumPy was 719s installed. 719s 719s We have compiled some common reasons and troubleshooting tips at: 719s 719s https://numpy.org/devdocs/user/troubleshooting-importerror.html 719s 719s Please note and check the following: 719s 719s * The Python version is: Python3.13 from "/usr/bin/python3.13" 719s * The NumPy version is: "1.26.4" 719s 719s and make sure that they are the versions you expect. 719s Please carefully study the documentation linked above for further help. 719s 719s Original error was: No module named 'numpy.core._multiarray_umath' 719s 719s 719s The above exception was the direct cause of the following exception: 719s 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/periodic/demo_periodic.py", line 33, in 719s import matplotlib.pyplot as plt 719s File "/usr/lib/python3/dist-packages/matplotlib/__init__.py", line 156, in 719s import numpy 719s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 719s raise ImportError(msg) from e 719s ImportError: Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there. 719s _____________________ test_demos[path6-demo_subdomains.py] _____________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/subdomains') 719s name = 'demo_subdomains.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_subdomains.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/subdomains', 'env': {'ADTTMP': '/tmp/autopkgtest...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_subdomains.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/subdomains/demo_subdomains.py", line 32, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ____________________ test_demos[path7-demo_stokes-mini.py] _____________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/stokes-mini') 719s name = 'demo_stokes-mini.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_stokes-mini.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/stokes-mini', 'env': {'ADTTMP': '/tmp/autopkgtes...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_stokes-mini.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 719s from . import multiarray 719s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 719s from . import overrides 719s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 719s from numpy.core._multiarray_umath import ( 719s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 719s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 719s 719s During handling of the above exception, another exception occurred: 719s 719s Traceback (most recent call last): 719s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 719s from numpy.__config__ import show as show_config 719s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 719s from numpy.core._multiarray_umath import ( 719s ...<3 lines>... 719s ) 719s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 719s raise ImportError(msg) 719s ImportError: 719s 719s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 719s 719s Importing the numpy C-extensions failed. This error can happen for 719s many reasons, often due to issues with your setup or how NumPy was 719s installed. 719s 719s We have compiled some common reasons and troubleshooting tips at: 719s 719s https://numpy.org/devdocs/user/troubleshooting-importerror.html 719s 719s Please note and check the following: 719s 719s * The Python version is: Python3.13 from "/usr/bin/python3.13" 719s * The NumPy version is: "1.26.4" 719s 719s and make sure that they are the versions you expect. 719s Please carefully study the documentation linked above for further help. 719s 719s Original error was: No module named 'numpy.core._multiarray_umath' 719s 719s 719s The above exception was the direct cause of the following exception: 719s 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/stokes-mini/demo_stokes-mini.py", line 27, in 719s import matplotlib.pyplot as plt 719s File "/usr/lib/python3/dist-packages/matplotlib/__init__.py", line 156, in 719s import numpy 719s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 719s raise ImportError(msg) from e 719s ImportError: Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there. 719s _________________ test_demos[path8-demo_stokes-taylor-hood.py] _________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/stokes-taylor-hood') 719s name = 'demo_stokes-taylor-hood.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_stokes-taylor-hood.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/stokes-taylor-hood', 'env': {'ADTTMP': '/tmp/aut...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_stokes-taylor-hood.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 719s from . import multiarray 719s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 719s from . import overrides 719s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 719s from numpy.core._multiarray_umath import ( 719s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 719s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 719s 719s During handling of the above exception, another exception occurred: 719s 719s Traceback (most recent call last): 719s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 719s from numpy.__config__ import show as show_config 719s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 719s from numpy.core._multiarray_umath import ( 719s ...<3 lines>... 719s ) 719s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 719s raise ImportError(msg) 719s ImportError: 719s 719s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 719s 719s Importing the numpy C-extensions failed. This error can happen for 719s many reasons, often due to issues with your setup or how NumPy was 719s installed. 719s 719s We have compiled some common reasons and troubleshooting tips at: 719s 719s https://numpy.org/devdocs/user/troubleshooting-importerror.html 719s 719s Please note and check the following: 719s 719s * The Python version is: Python3.13 from "/usr/bin/python3.13" 719s * The NumPy version is: "1.26.4" 719s 719s and make sure that they are the versions you expect. 719s Please carefully study the documentation linked above for further help. 719s 719s Original error was: No module named 'numpy.core._multiarray_umath' 719s 719s 719s The above exception was the direct cause of the following exception: 719s 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/stokes-taylor-hood/demo_stokes-taylor-hood.py", line 31, in 719s import matplotlib.pyplot as plt 719s File "/usr/lib/python3/dist-packages/matplotlib/__init__.py", line 156, in 719s import numpy 719s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 719s raise ImportError(msg) from e 719s ImportError: Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there. 719s _________________ test_demos[path9-demo_nonlinear-poisson.py] __________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/nonlinear-poisson') 719s name = 'demo_nonlinear-poisson.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_nonlinear-poisson.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/nonlinear-poisson', 'env': {'ADTTMP': '/tmp/auto...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_nonlinear-poisson.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 719s from . import multiarray 719s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 719s from . import overrides 719s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 719s from numpy.core._multiarray_umath import ( 719s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 719s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 719s 719s During handling of the above exception, another exception occurred: 719s 719s Traceback (most recent call last): 719s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 719s from numpy.__config__ import show as show_config 719s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 719s from numpy.core._multiarray_umath import ( 719s ...<3 lines>... 719s ) 719s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 719s raise ImportError(msg) 719s ImportError: 719s 719s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 719s 719s Importing the numpy C-extensions failed. This error can happen for 719s many reasons, often due to issues with your setup or how NumPy was 719s installed. 719s 719s We have compiled some common reasons and troubleshooting tips at: 719s 719s https://numpy.org/devdocs/user/troubleshooting-importerror.html 719s 719s Please note and check the following: 719s 719s * The Python version is: Python3.13 from "/usr/bin/python3.13" 719s * The NumPy version is: "1.26.4" 719s 719s and make sure that they are the versions you expect. 719s Please carefully study the documentation linked above for further help. 719s 719s Original error was: No module named 'numpy.core._multiarray_umath' 719s 719s 719s The above exception was the direct cause of the following exception: 719s 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/nonlinear-poisson/demo_nonlinear-poisson.py", line 105, in 719s import matplotlib.pyplot as plt 719s File "/usr/lib/python3/dist-packages/matplotlib/__init__.py", line 156, in 719s import numpy 719s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 719s raise ImportError(msg) from e 719s ImportError: Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there. 719s _________________ test_demos[path12-demo_singular-poisson.py] __________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/singular-poisson') 719s name = 'demo_singular-poisson.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_singular-poisson.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/singular-poisson', 'env': {'ADTTMP': '/tmp/autop...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_singular-poisson.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/singular-poisson/demo_singular-poisson.py", line 99, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ____________________ test_demos[path13-demo_biharmonic.py] _____________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/biharmonic') 719s name = 'demo_biharmonic.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_biharmonic.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/biharmonic', 'env': {'ADTTMP': '/tmp/autopkgtest...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_biharmonic.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 719s from . import multiarray 719s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 719s from . import overrides 719s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 719s from numpy.core._multiarray_umath import ( 719s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 719s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 719s 719s During handling of the above exception, another exception occurred: 719s 719s Traceback (most recent call last): 719s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 719s from numpy.__config__ import show as show_config 719s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 719s from numpy.core._multiarray_umath import ( 719s ...<3 lines>... 719s ) 719s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 719s raise ImportError(msg) 719s ImportError: 719s 719s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 719s 719s Importing the numpy C-extensions failed. This error can happen for 719s many reasons, often due to issues with your setup or how NumPy was 719s installed. 719s 719s We have compiled some common reasons and troubleshooting tips at: 719s 719s https://numpy.org/devdocs/user/troubleshooting-importerror.html 719s 719s Please note and check the following: 719s 719s * The Python version is: Python3.13 from "/usr/bin/python3.13" 719s * The NumPy version is: "1.26.4" 719s 719s and make sure that they are the versions you expect. 719s Please carefully study the documentation linked above for further help. 719s 719s Original error was: No module named 'numpy.core._multiarray_umath' 719s 719s 719s The above exception was the direct cause of the following exception: 719s 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/biharmonic/demo_biharmonic.py", line 102, in 719s import matplotlib.pyplot as plt 719s File "/usr/lib/python3/dist-packages/matplotlib/__init__.py", line 156, in 719s import numpy 719s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 719s raise ImportError(msg) from e 719s ImportError: Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there. 719s _____________ test_demos[path14-demo_nonmatching-interpolation.py] _____________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/nonmatching-interpolation') 719s name = 'demo_nonmatching-interpolation.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_nonmatching-interpolation.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/nonmatching-interpolation', 'env': {'ADTTMP': '/...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_nonmatching-interpolation.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/nonmatching-interpolation/demo_nonmatching-interpolation.py", line 18, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ____________________ test_demos[path15-demo_eigenvalue.py] _____________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/eigenvalue') 719s name = 'demo_eigenvalue.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_eigenvalue.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/eigenvalue', 'env': {'ADTTMP': '/tmp/autopkgtest...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_eigenvalue.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 719s from . import multiarray 719s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 719s from . import overrides 719s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 719s from numpy.core._multiarray_umath import ( 719s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 719s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 719s 719s During handling of the above exception, another exception occurred: 719s 719s Traceback (most recent call last): 719s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 719s from numpy.__config__ import show as show_config 719s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 719s from numpy.core._multiarray_umath import ( 719s ...<3 lines>... 719s ) 719s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 719s raise ImportError(msg) 719s ImportError: 719s 719s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 719s 719s Importing the numpy C-extensions failed. This error can happen for 719s many reasons, often due to issues with your setup or how NumPy was 719s installed. 719s 719s We have compiled some common reasons and troubleshooting tips at: 719s 719s https://numpy.org/devdocs/user/troubleshooting-importerror.html 719s 719s Please note and check the following: 719s 719s * The Python version is: Python3.13 from "/usr/bin/python3.13" 719s * The NumPy version is: "1.26.4" 719s 719s and make sure that they are the versions you expect. 719s Please carefully study the documentation linked above for further help. 719s 719s Original error was: No module named 'numpy.core._multiarray_umath' 719s 719s 719s The above exception was the direct cause of the following exception: 719s 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/eigenvalue/demo_eigenvalue.py", line 25, in 719s import matplotlib.pyplot as plt 719s File "/usr/lib/python3/dist-packages/matplotlib/__init__.py", line 156, in 719s import numpy 719s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 719s raise ImportError(msg) from e 719s ImportError: Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there. 719s ___________________ test_demos[path16-demo_mixed-poisson.py] ___________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/mixed-poisson') 719s name = 'demo_mixed-poisson.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_mixed-poisson.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/mixed-poisson', 'env': {'ADTTMP': '/tmp/autopkgt...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_mixed-poisson.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/mixed-poisson/demo_mixed-poisson.py", line 119, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s __________________ test_demos[path17-demo_neumann-poisson.py] __________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/neumann-poisson') 719s name = 'demo_neumann-poisson.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_neumann-poisson.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/neumann-poisson', 'env': {'ADTTMP': '/tmp/autopk...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_neumann-poisson.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/neumann-poisson/demo_neumann-poisson.py", line 122, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ________________ test_demos[path18-demo_subdomains-poisson.py] _________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/subdomains-poisson') 719s name = 'demo_subdomains-poisson.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_subdomains-poisson.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/subdomains-poisson', 'env': {'ADTTMP': '/tmp/aut...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_subdomains-poisson.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/subdomains-poisson/demo_subdomains-poisson.py:108: SyntaxWarning: invalid escape sequence '\i' 719s print("\int grad(u) * n ds(2) = ", v1) 719s /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/subdomains-poisson/demo_subdomains-poisson.py:113: SyntaxWarning: invalid escape sequence '\i' 719s print("\int u dx(1) = ", v2) 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/subdomains-poisson/demo_subdomains-poisson.py", line 24, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s _______________ test_demos[path20-demo_auto-adaptive-poisson.py] _______________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/auto-adaptive-poisson') 719s name = 'demo_auto-adaptive-poisson.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_auto-adaptive-poisson.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/auto-adaptive-poisson', 'env': {'ADTTMP': '/tmp/...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_auto-adaptive-poisson.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 719s from . import multiarray 719s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 719s from . import overrides 719s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 719s from numpy.core._multiarray_umath import ( 719s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 719s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 719s 719s During handling of the above exception, another exception occurred: 719s 719s Traceback (most recent call last): 719s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 719s from numpy.__config__ import show as show_config 719s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 719s from numpy.core._multiarray_umath import ( 719s ...<3 lines>... 719s ) 719s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 719s raise ImportError(msg) 719s ImportError: 719s 719s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 719s 719s Importing the numpy C-extensions failed. This error can happen for 719s many reasons, often due to issues with your setup or how NumPy was 719s installed. 719s 719s We have compiled some common reasons and troubleshooting tips at: 719s 719s https://numpy.org/devdocs/user/troubleshooting-importerror.html 719s 719s Please note and check the following: 719s 719s * The Python version is: Python3.13 from "/usr/bin/python3.13" 719s * The NumPy version is: "1.26.4" 719s 719s and make sure that they are the versions you expect. 719s Please carefully study the documentation linked above for further help. 719s 719s Original error was: No module named 'numpy.core._multiarray_umath' 719s 719s 719s The above exception was the direct cause of the following exception: 719s 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/documented/auto-adaptive-poisson/demo_auto-adaptive-poisson.py", line 156, in 719s import matplotlib.pyplot as plt 719s File "/usr/lib/python3/dist-packages/matplotlib/__init__.py", line 156, in 719s import numpy 719s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 719s raise ImportError(msg) from e 719s ImportError: Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there. 719s __________________ test_demos[path21-demo_point-integral.py] ___________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/point-integral') 719s name = 'demo_point-integral.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_point-integral.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/point-integral', 'env': {'ADTTMP': '/tmp/autop...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_point-integral.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/point-integral/demo_point-integral.py", line 37, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ________________ test_demos[path22-demo_spatial-coordinates.py] ________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/spatial-coordinates') 719s name = 'demo_spatial-coordinates.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_spatial-coordinates.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/spatial-coordinates', 'env': {'ADTTMP': '/tmp/...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_spatial-coordinates.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/spatial-coordinates/demo_spatial-coordinates.py", line 41, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ______________ test_demos[path23-demo_sub-function-assignment.py] ______________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/sub-function-assignment') 719s name = 'demo_sub-function-assignment.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_sub-function-assignment.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/sub-function-assignment', 'env': {'ADTTMP': '/...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_sub-function-assignment.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/sub-function-assignment/demo_sub-function-assignment.py", line 23, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ___________________ test_demos[path24-demo_formsplitter.py] ____________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/formsplitter') 719s name = 'demo_formsplitter.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_formsplitter.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/formsplitter', 'env': {'ADTTMP': '/tmp/autopkg...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_formsplitter.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/formsplitter/demo_formsplitter.py", line 1, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ____________________ test_demos[path25-demo_coordinates.py] ____________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/coordinates') 719s name = 'demo_coordinates.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_coordinates.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/coordinates', 'env': {'ADTTMP': '/tmp/autopkgt...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_coordinates.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/coordinates/demo_coordinates.py", line 21, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s _____________ test_demos[path27-demo_projection-interpolation.py] ______________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/projection-interpolation') 719s name = 'demo_projection-interpolation.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_projection-interpolation.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/projection-interpolation', 'env': {'ADTTMP': '...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_projection-interpolation.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/projection-interpolation/demo_projection-interpolation.py", line 24, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s __________________ test_demos[path28-demo_poisson1D-in-2D.py] __________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/poisson1D-in-2D') 719s name = 'demo_poisson1D-in-2D.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_poisson1D-in-2D.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/poisson1D-in-2D', 'env': {'ADTTMP': '/tmp/auto...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_poisson1D-in-2D.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/poisson1D-in-2D/demo_poisson1D-in-2D.py", line 39, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ____________________ test_demos[path29-demo_functional.py] _____________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/functional') 719s name = 'demo_functional.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_functional.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/functional', 'env': {'ADTTMP': '/tmp/autopkgte...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_functional.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/functional/demo_functional.py", line 34, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s _________________ test_demos[path30-demo_adaptive-poisson.py] __________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/adaptive-poisson') 719s name = 'demo_adaptive-poisson.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_adaptive-poisson.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/adaptive-poisson', 'env': {'ADTTMP': '/tmp/aut...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_adaptive-poisson.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/adaptive-poisson/demo_adaptive-poisson.py", line 35, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s _________________ test_demos[path31-demo_multimesh-poisson.py] _________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/multimesh-poisson') 719s name = 'demo_multimesh-poisson.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_multimesh-poisson.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/multimesh-poisson', 'env': {'ADTTMP': '/tmp/au...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_multimesh-poisson.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/multimesh-poisson/demo_multimesh-poisson.py", line 26, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ________________ test_demos[path32-demo_parallel-refinement.py] ________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/parallel-refinement') 719s name = 'demo_parallel-refinement.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_parallel-refinement.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/parallel-refinement', 'env': {'ADTTMP': '/tmp/...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_parallel-refinement.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/parallel-refinement/demo_parallel-refinement.py", line 21, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ___________________ test_demos[path33-demo_optimization.py] ____________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/optimization') 719s name = 'demo_optimization.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_optimization.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/optimization', 'env': {'ADTTMP': '/tmp/autopkg...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_optimization.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/optimization/demo_optimization.py", line 22, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s _____________________ test_demos[path34-demo_lift-drag.py] _____________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/lift-drag') 719s name = 'demo_lift-drag.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_lift-drag.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/lift-drag', 'env': {'ADTTMP': '/tmp/autopkgtes...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_lift-drag.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/lift-drag/demo_lift-drag.py", line 36, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ________________ test_demos[path35-demo_block-assembly-2D2D.py] ________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/block-assembly-2D2D') 719s name = 'demo_block-assembly-2D2D.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_block-assembly-2D2D.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/block-assembly-2D2D', 'env': {'ADTTMP': '/tmp/...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_block-assembly-2D2D.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/block-assembly-2D2D/demo_block-assembly-2D2D.py", line 1, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ___________ test_demos[path36-demo_block-assembly-2D2D-nonlinear.py] ___________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/block-assembly-2D2D') 719s name = 'demo_block-assembly-2D2D-nonlinear.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_block-assembly-2D2D-nonlinear.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/block-assembly-2D2D', 'env': {'ADTTMP': '/tmp/...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_block-assembly-2D2D-nonlinear.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/block-assembly-2D2D/demo_block-assembly-2D2D-nonlinear.py", line 1, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ________________ test_demos[path37-demo_mixedfunctionspace.py] _________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/mixedfunctionspace') 719s name = 'demo_mixedfunctionspace.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_mixedfunctionspace.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/mixedfunctionspace', 'env': {'ADTTMP': '/tmp/a...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_mixedfunctionspace.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/mixedfunctionspace/demo_mixedfunctionspace.py", line 1, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ___________________ test_demos[path38-demo_poisson-disc.py] ____________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/poisson-disc') 719s name = 'demo_poisson-disc.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_poisson-disc.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/poisson-disc', 'env': {'ADTTMP': '/tmp/autopkg...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_poisson-disc.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/poisson-disc/demo_poisson-disc.py", line 36, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ___________________ test_demos[path39-demo_meshview-2D2D.py] ___________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/meshview-2D2D') 719s name = 'demo_meshview-2D2D.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_meshview-2D2D.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/meshview-2D2D', 'env': {'ADTTMP': '/tmp/autopk...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_meshview-2D2D.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/meshview-2D2D/demo_meshview-2D2D.py", line 1, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s _____________________ test_demos[path40-demo_poisson1D.py] _____________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/poisson1D') 719s name = 'demo_poisson1D.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_poisson1D.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/poisson1D', 'env': {'ADTTMP': '/tmp/autopkgtes...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_poisson1D.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/poisson1D/demo_poisson1D.py", line 37, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s _________________ test_demos[path41-demo_special-functions.py] _________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/special-functions') 719s name = 'demo_special-functions.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_special-functions.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/special-functions', 'env': {'ADTTMP': '/tmp/au...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_special-functions.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/special-functions/demo_special-functions.py", line 25, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s _______________ test_demos[path42-demo_mixed-poisson-sphere.py] ________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/mixed-poisson-sphere') 719s name = 'demo_mixed-poisson-sphere.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_mixed-poisson-sphere.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/mixed-poisson-sphere', 'env': {'ADTTMP': '/tmp...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_mixed-poisson-sphere.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/mixed-poisson-sphere/demo_mixed-poisson-sphere.py", line 28, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ___________________ test_demos[path43-demo_meshview-3D1D.py] ___________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/meshview-3D1D') 719s name = 'demo_meshview-3D1D.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_meshview-3D1D.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/meshview-3D1D', 'env': {'ADTTMP': '/tmp/autopk...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_meshview-3D1D.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/meshview-3D1D/demo_meshview-3D1D.py", line 1, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s _______________________ test_demos[path44-demo_mplot.py] _______________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/mplot') 719s name = 'demo_mplot.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_mplot.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/mplot', 'env': {'ADTTMP': '/tmp/autopkgtest.Sh...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_mplot.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/mplot/demo_mplot.py", line 20, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s _________________ test_demos[path45-demo_multimesh_marking.py] _________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/multimesh-marking') 719s name = 'demo_multimesh_marking.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_multimesh_marking.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/multimesh-marking', 'env': {'ADTTMP': '/tmp/au...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_multimesh_marking.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/multimesh-marking/demo_multimesh_marking.py", line 1, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ___________________ test_demos[path46-demo_block-matrix.py] ____________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/block-matrix') 719s name = 'demo_block-matrix.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_block-matrix.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/block-matrix', 'env': {'ADTTMP': '/tmp/autopkg...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_block-matrix.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/block-matrix/demo_block-matrix.py", line 26, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s __________________ test_demos[path47-demo_contact-vi-snes.py] __________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/contact-vi-snes') 719s name = 'demo_contact-vi-snes.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_contact-vi-snes.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/contact-vi-snes', 'env': {'ADTTMP': '/tmp/auto...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_contact-vi-snes.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/contact-vi-snes/demo_contact-vi-snes.py", line 25, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ______________________ test_demos[path48-demo_submesh.py] ______________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/submesh') 719s name = 'demo_submesh.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_submesh.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/submesh', 'env': {'ADTTMP': '/tmp/autopkgtest....tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_submesh.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/submesh/demo_submesh.py", line 25, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s _____________________ test_demos[path49-demo_smoothing.py] _____________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/smoothing') 719s name = 'demo_smoothing.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_smoothing.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/smoothing', 'env': {'ADTTMP': '/tmp/autopkgtes...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_smoothing.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/smoothing/demo_smoothing.py", line 23, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ________________________ test_demos[path50-demo_ale.py] ________________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/ale') 719s name = 'demo_ale.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_ale.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/ale', 'env': {'ADTTMP': '/tmp/autopkgtest.ShOy...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_ale.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/ale/demo_ale.py", line 26, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ____________________ test_demos[path51-demo_time-series.py] ____________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/time-series') 719s name = 'demo_time-series.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_time-series.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/time-series', 'env': {'ADTTMP': '/tmp/autopkgt...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_time-series.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/time-series/demo_time-series.py", line 21, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ____________________ test_demos[path52-demo_conditional.py] ____________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/conditional') 719s name = 'demo_conditional.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_conditional.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/conditional', 'env': {'ADTTMP': '/tmp/autopkgt...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_conditional.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/conditional/demo_conditional.py", line 37, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ________________ test_demos[path53-demo_block-assembly-3D1D.py] ________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/block-assembly-3D1D') 719s name = 'demo_block-assembly-3D1D.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_block-assembly-3D1D.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/block-assembly-3D1D', 'env': {'ADTTMP': '/tmp/...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_block-assembly-3D1D.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/block-assembly-3D1D/demo_block-assembly-3D1D.py", line 1, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ___________________ test_demos[path54-demo_extrapolation.py] ___________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/extrapolation') 719s name = 'demo_extrapolation.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_extrapolation.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/extrapolation', 'env': {'ADTTMP': '/tmp/autopk...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_extrapolation.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/extrapolation/demo_extrapolation.py", line 21, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ________________ test_demos[path55-demo_overlapping-regions.py] ________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/overlapping-regions') 719s name = 'demo_overlapping-regions.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_overlapping-regions.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/overlapping-regions', 'env': {'ADTTMP': '/tmp/...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_overlapping-regions.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/overlapping-regions/demo_overlapping-regions.py", line 26, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ___________________ test_demos[path56-demo_meshview-3D2D.py] ___________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/meshview-3D2D') 719s name = 'demo_meshview-3D2D.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_meshview-3D2D.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/meshview-3D2D', 'env': {'ADTTMP': '/tmp/autopk...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_meshview-3D2D.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/meshview-3D2D/demo_meshview-3D2D.py", line 1, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s _____________________ test_demos[path57-demo_waveguide.py] _____________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/waveguide') 719s name = 'demo_waveguide.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_waveguide.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/waveguide', 'env': {'ADTTMP': '/tmp/autopkgtes...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_waveguide.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/waveguide/demo_waveguide.py", line 37, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s _____________________ test_demos[path58-demo_curl-curl.py] _____________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/curl-curl') 719s name = 'demo_curl-curl.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_curl-curl.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/curl-curl', 'env': {'ADTTMP': '/tmp/autopkgtes...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_curl-curl.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s /tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/curl-curl/demo_curl-curl.py:1: SyntaxWarning: invalid escape sequence '\p' 719s """Eddy currents phenomena in low conducting body can be described 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/curl-curl/demo_curl-curl.py", line 44, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ________________ test_demos[path59-demo_advection-diffusion.py] ________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/advection-diffusion') 719s name = 'demo_advection-diffusion.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_advection-diffusion.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/advection-diffusion', 'env': {'ADTTMP': '/tmp/...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_advection-diffusion.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/advection-diffusion/demo_advection-diffusion.py", line 28, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ______________________ test_demos[path60-demo_matnest.py] ______________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/matnest') 719s name = 'demo_matnest.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_matnest.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/matnest', 'env': {'ADTTMP': '/tmp/autopkgtest....tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_matnest.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/matnest/demo_matnest.py", line 18, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ____________________ test_demos[path61-demo_elementplot.py] ____________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/elementplot') 719s name = 'demo_elementplot.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_elementplot.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/elementplot', 'env': {'ADTTMP': '/tmp/autopkgt...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_elementplot.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/elementplot/demo_elementplot.py", line 23, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s _______________ test_demos[path62-demo_multimesh-quadrature.py] ________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/multimesh-quadrature') 719s name = 'demo_multimesh-quadrature.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_multimesh-quadrature.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/multimesh-quadrature', 'env': {'ADTTMP': '/tmp...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_multimesh-quadrature.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/multimesh-quadrature/demo_multimesh-quadrature.py", line 31, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ___________________ test_demos[path63-demo_mesh-quality.py] ____________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/mesh-quality') 719s name = 'demo_mesh-quality.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_mesh-quality.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/mesh-quality', 'env': {'ADTTMP': '/tmp/autopkg...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_mesh-quality.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/mesh-quality/demo_mesh-quality.py", line 24, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ____________________ test_demos[path64-demo_parameters.py] _____________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/parameters') 719s name = 'demo_parameters.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_parameters.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/parameters', 'env': {'ADTTMP': '/tmp/autopkgte...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_parameters.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/parameters/demo_parameters.py", line 29, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s __________________ test_demos[path65-demo_contact-vi-tao.py] ___________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/contact-vi-tao') 719s name = 'demo_contact-vi-tao.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_contact-vi-tao.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/contact-vi-tao', 'env': {'ADTTMP': '/tmp/autop...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_contact-vi-tao.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/contact-vi-tao/demo_contact-vi-tao.py", line 29, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ___________________ test_demos[path66-demo_interpolation.py] ___________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/interpolation') 719s name = 'demo_interpolation.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_interpolation.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/interpolation', 'env': {'ADTTMP': '/tmp/autopk...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_interpolation.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/interpolation/demo_interpolation.py", line 28, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ___________________ test_demos[path67-demo_meshview-3D3D.py] ___________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/meshview-3D3D') 719s name = 'demo_meshview-3D3D.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_meshview-3D3D.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/meshview-3D3D', 'env': {'ADTTMP': '/tmp/autopk...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_meshview-3D3D.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/meshview-3D3D/demo_meshview-3D3D.py", line 1, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ______________ test_demos[path68-demo_dg-advection-diffusion.py] _______________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/dg-advection-diffusion') 719s name = 'demo_dg-advection-diffusion.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_dg-advection-diffusion.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/dg-advection-diffusion', 'env': {'ADTTMP': '/t...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_dg-advection-diffusion.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/dg-advection-diffusion/demo_dg-advection-diffusion.py", line 27, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ______________________ test_demos[path69-demo_timing.py] _______________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/timing') 719s name = 'demo_timing.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_timing.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/timing', 'env': {'ADTTMP': '/tmp/autopkgtest.S...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_timing.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/timing/demo_timing.py", line 18, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s _________________ test_demos[path70-demo_multimesh-stokes.py] __________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/multimesh-stokes') 719s name = 'demo_multimesh-stokes.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_multimesh-stokes.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/multimesh-stokes', 'env': {'ADTTMP': '/tmp/aut...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_multimesh-stokes.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/multimesh-stokes/demo_multimesh-stokes.py", line 24, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ____________________ test_demos[path71-demo_ghost-mesh.py] _____________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/ghost-mesh') 719s name = 'demo_ghost-mesh.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_ghost-mesh.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/ghost-mesh', 'env': {'ADTTMP': '/tmp/autopkgte...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_ghost-mesh.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/ghost-mesh/demo_ghost-mesh.py", line 5, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s _________________ test_demos[path72-demo_multistage-solver.py] _________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/multistage-solver') 719s name = 'demo_multistage-solver.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_multistage-solver.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/multistage-solver', 'env': {'ADTTMP': '/tmp/au...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_multistage-solver.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/multistage-solver/demo_multistage-solver.py", line 38, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ___________________ test_demos[path73-demo_buckling-tao.py] ____________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/buckling-tao') 719s name = 'demo_buckling-tao.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_buckling-tao.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/buckling-tao', 'env': {'ADTTMP': '/tmp/autopkg...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_buckling-tao.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/buckling-tao/demo_buckling-tao.py", line 29, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ______________ test_demos[path74-demo_nonmatching-projection.py] _______________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/nonmatching-projection') 719s name = 'demo_nonmatching-projection.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_nonmatching-projection.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/nonmatching-projection', 'env': {'ADTTMP': '/t...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_nonmatching-projection.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/nonmatching-projection/demo_nonmatching-projection.py", line 26, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ____________________ test_demos[path75-demo_dg-poisson.py] _____________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/dg-poisson') 719s name = 'demo_dg-poisson.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_dg-poisson.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/dg-poisson', 'env': {'ADTTMP': '/tmp/autopkgte...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_dg-poisson.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/dg-poisson/demo_dg-poisson.py", line 39, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ____________________ test_demos[path76-demo_refinement.py] _____________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/refinement') 719s name = 'demo_refinement.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_refinement.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/refinement', 'env': {'ADTTMP': '/tmp/autopkgte...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_refinement.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/refinement/demo_refinement.py", line 24, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s _________________ test_demos[path77-demo_sym-dirichlet-bc.py] __________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/sym-dirichlet-bc') 719s name = 'demo_sym-dirichlet-bc.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_sym-dirichlet-bc.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/sym-dirichlet-bc', 'env': {'ADTTMP': '/tmp/aut...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_sym-dirichlet-bc.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/sym-dirichlet-bc/demo_sym-dirichlet-bc.py", line 27, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ________________ test_demos[path78-demo_collision-detection.py] ________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/collision-detection') 719s name = 'demo_collision-detection.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_collision-detection.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/collision-detection', 'env': {'ADTTMP': '/tmp/...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_collision-detection.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/collision-detection/demo_collision-detection.py", line 18, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s _______________________ test_demos[path80-demo_eval.py] ________________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/eval') 719s name = 'demo_eval.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_eval.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/eval', 'env': {'ADTTMP': '/tmp/autopkgtest.ShO...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_eval.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/eval/demo_eval.py", line 23, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ________________ test_demos[path81-demo_block-assembly-3D2D.py] ________________ 719s 719s mpiexec = None, num_proc = 1 719s path = PosixPath('/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/block-assembly-3D2D') 719s name = 'demo_block-assembly-3D2D.py' 719s 719s @pytest.mark.parametrize("path,name", demos) 719s def test_demos(mpiexec, num_proc, path, name): 719s 719s if mpiexec is None: 719s # Run in serial 719s > ret = subprocess.run([sys.executable, name], 719s cwd=str(path), 719s env={**os.environ, 'MPLBACKEND': 'agg'}, 719s check=True) 719s 719s python/demo/test.py:35: 719s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 719s 719s input = None, capture_output = False, timeout = None, check = True 719s popenargs = (['/usr/bin/python3.13', 'demo_block-assembly-3D2D.py'],) 719s kwargs = {'cwd': '/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/block-assembly-3D2D', 'env': {'ADTTMP': '/tmp/...tdlib-extensions/3.12.7-1', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.ShOyTP/test-dolfin-python-demo-artifacts', ...}} 719s process = 719s stdout = None, stderr = None, retcode = 1 719s 719s def run(*popenargs, 719s input=None, capture_output=False, timeout=None, check=False, **kwargs): 719s """Run command with arguments and return a CompletedProcess instance. 719s 719s The returned instance will have attributes args, returncode, stdout and 719s stderr. By default, stdout and stderr are not captured, and those attributes 719s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 719s or pass capture_output=True to capture both. 719s 719s If check is True and the exit code was non-zero, it raises a 719s CalledProcessError. The CalledProcessError object will have the return code 719s in the returncode attribute, and output & stderr attributes if those streams 719s were captured. 719s 719s If timeout is given, and the process takes too long, a TimeoutExpired 719s exception will be raised. 719s 719s There is an optional argument "input", allowing you to 719s pass bytes or a string to the subprocess's stdin. If you use this argument 719s you may not also use the Popen constructor's "stdin" argument, as 719s it will be used internally. 719s 719s By default, all communication is in bytes, and therefore any "input" should 719s be bytes, and the stdout and stderr will be bytes. If in text mode, any 719s "input" should be a string, and stdout and stderr will be strings decoded 719s according to locale encoding, or by "encoding" if set. Text mode is 719s triggered by setting any of text, encoding, errors or universal_newlines. 719s 719s The other arguments are the same as for the Popen constructor. 719s """ 719s if input is not None: 719s if kwargs.get('stdin') is not None: 719s raise ValueError('stdin and input arguments may not both be used.') 719s kwargs['stdin'] = PIPE 719s 719s if capture_output: 719s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 719s raise ValueError('stdout and stderr arguments may not be used ' 719s 'with capture_output.') 719s kwargs['stdout'] = PIPE 719s kwargs['stderr'] = PIPE 719s 719s with Popen(*popenargs, **kwargs) as process: 719s try: 719s stdout, stderr = process.communicate(input, timeout=timeout) 719s except TimeoutExpired as exc: 719s process.kill() 719s if _mswindows: 719s # Windows accumulates the output in a single blocking 719s # read() call run on child threads, with the timeout 719s # being done in a join() on those threads. communicate() 719s # _after_ kill() is required to collect that and add it 719s # to the exception. 719s exc.stdout, exc.stderr = process.communicate() 719s else: 719s # POSIX _communicate already populated the output so 719s # far into the TimeoutExpired exception. 719s process.wait() 719s raise 719s except: # Including KeyboardInterrupt, communicate handled that. 719s process.kill() 719s # We don't call process.wait() as .__exit__ does that for us. 719s raise 719s retcode = process.poll() 719s if check and retcode: 719s > raise CalledProcessError(retcode, process.args, 719s output=stdout, stderr=stderr) 719s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_block-assembly-3D2D.py']' returned non-zero exit status 1. 719s 719s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 719s ----------------------------- Captured stderr call ----------------------------- 719s Traceback (most recent call last): 719s File "/tmp/autopkgtest.ShOyTP/build.fwM/src/python/demo/undocumented/block-assembly-3D2D/demo_block-assembly-3D2D.py", line 1, in 719s from dolfin import * 719s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 719s pusimp.prevent_user_site_imports( 719s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 719s "dolfin", "apt", "https://fenicsproject.discourse.group/", 719s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 719s ...<8 lines>... 719s pip_uninstall_call 719s ^^^^^^^^^^^^^^^^^^ 719s ) 719s ^ 719s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 719s raise ImportError(import_error) 719s ImportError: pusimp has detected the following problems with dolfin dependencies: 719s 1) Broken dependencies: 719s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 719s its source directory; please exit the numpy source tree, and relaunch 719s your python interpreter from there.'. 719s 719s pusimp suggests to apply all of the following fixes: 719s 1) To fix broken dependencies: 719s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 719s 719s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 719s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 719s ============================= slowest 20 durations ============================= 719s 0.24s call demo/test.py::test_demos[path43-demo_meshview-3D1D.py] 719s 0.20s call demo/test.py::test_demos[path67-demo_meshview-3D3D.py] 719s 0.20s call demo/test.py::test_demos[path51-demo_time-series.py] 719s 0.20s call demo/test.py::test_demos[path66-demo_interpolation.py] 719s 0.20s call demo/test.py::test_demos[path65-demo_contact-vi-tao.py] 719s 0.20s call demo/test.py::test_demos[path70-demo_multimesh-stokes.py] 719s 0.20s call demo/test.py::test_demos[path76-demo_refinement.py] 719s 0.19s call demo/test.py::test_demos[path73-demo_buckling-tao.py] 719s 0.19s call demo/test.py::test_demos[path64-demo_parameters.py] 719s 0.19s call demo/test.py::test_demos[path69-demo_timing.py] 719s 0.19s call demo/test.py::test_demos[path71-demo_ghost-mesh.py] 719s 0.19s call demo/test.py::test_demos[path77-demo_sym-dirichlet-bc.py] 719s 0.19s call demo/test.py::test_demos[path68-demo_dg-advection-diffusion.py] 719s 0.19s call demo/test.py::test_demos[path63-demo_mesh-quality.py] 719s 0.19s call demo/test.py::test_demos[path78-demo_collision-detection.py] 719s 0.19s call demo/test.py::test_demos[path17-demo_neumann-poisson.py] 719s 0.19s call demo/test.py::test_demos[path72-demo_multistage-solver.py] 719s 0.19s call demo/test.py::test_demos[path74-demo_nonmatching-projection.py] 719s 0.19s call demo/test.py::test_demos[path16-demo_mixed-poisson.py] 719s 0.19s call demo/test.py::test_demos[path58-demo_curl-curl.py] 719s =========================== short test summary info ============================ 719s FAILED python/demo/test.py::test_demos[path0-demo_built-in-meshes.py] - subpr... 719s FAILED python/demo/test.py::test_demos[path1-demo_stokes-iterative.py] - subp... 719s FAILED python/demo/test.py::test_demos[path2-demo_maxwell-eigenvalues.py] - s... 719s FAILED python/demo/test.py::test_demos[path3-demo_poisson.py] - subprocess.Ca... 719s FAILED python/demo/test.py::test_demos[path5-demo_periodic.py] - subprocess.C... 719s FAILED python/demo/test.py::test_demos[path6-demo_subdomains.py] - subprocess... 719s FAILED python/demo/test.py::test_demos[path7-demo_stokes-mini.py] - subproces... 719s FAILED python/demo/test.py::test_demos[path8-demo_stokes-taylor-hood.py] - su... 719s FAILED python/demo/test.py::test_demos[path9-demo_nonlinear-poisson.py] - sub... 719s FAILED python/demo/test.py::test_demos[path12-demo_singular-poisson.py] - sub... 719s FAILED python/demo/test.py::test_demos[path13-demo_biharmonic.py] - subproces... 719s FAILED python/demo/test.py::test_demos[path14-demo_nonmatching-interpolation.py] 719s FAILED python/demo/test.py::test_demos[path15-demo_eigenvalue.py] - subproces... 719s FAILED python/demo/test.py::test_demos[path16-demo_mixed-poisson.py] - subpro... 719s FAILED python/demo/test.py::test_demos[path17-demo_neumann-poisson.py] - subp... 719s FAILED python/demo/test.py::test_demos[path18-demo_subdomains-poisson.py] - s... 719s FAILED python/demo/test.py::test_demos[path20-demo_auto-adaptive-poisson.py] 719s FAILED python/demo/test.py::test_demos[path21-demo_point-integral.py] - subpr... 719s FAILED python/demo/test.py::test_demos[path22-demo_spatial-coordinates.py] - ... 719s FAILED python/demo/test.py::test_demos[path23-demo_sub-function-assignment.py] 719s FAILED python/demo/test.py::test_demos[path24-demo_formsplitter.py] - subproc... 719s FAILED python/demo/test.py::test_demos[path25-demo_coordinates.py] - subproce... 719s FAILED python/demo/test.py::test_demos[path27-demo_projection-interpolation.py] 719s FAILED python/demo/test.py::test_demos[path28-demo_poisson1D-in-2D.py] - subp... 719s FAILED python/demo/test.py::test_demos[path29-demo_functional.py] - subproces... 719s FAILED python/demo/test.py::test_demos[path30-demo_adaptive-poisson.py] - sub... 719s FAILED python/demo/test.py::test_demos[path31-demo_multimesh-poisson.py] - su... 719s FAILED python/demo/test.py::test_demos[path32-demo_parallel-refinement.py] - ... 719s FAILED python/demo/test.py::test_demos[path33-demo_optimization.py] - subproc... 719s FAILED python/demo/test.py::test_demos[path34-demo_lift-drag.py] - subprocess... 719s FAILED python/demo/test.py::test_demos[path35-demo_block-assembly-2D2D.py] - ... 719s FAILED python/demo/test.py::test_demos[path36-demo_block-assembly-2D2D-nonlinear.py] 719s FAILED python/demo/test.py::test_demos[path37-demo_mixedfunctionspace.py] - s... 719s FAILED python/demo/test.py::test_demos[path38-demo_poisson-disc.py] - subproc... 719s FAILED python/demo/test.py::test_demos[path39-demo_meshview-2D2D.py] - subpro... 719s FAILED python/demo/test.py::test_demos[path40-demo_poisson1D.py] - subprocess... 719s FAILED python/demo/test.py::test_demos[path41-demo_special-functions.py] - su... 719s FAILED python/demo/test.py::test_demos[path42-demo_mixed-poisson-sphere.py] 719s FAILED python/demo/test.py::test_demos[path43-demo_meshview-3D1D.py] - subpro... 719s FAILED python/demo/test.py::test_demos[path44-demo_mplot.py] - subprocess.Cal... 719s FAILED python/demo/test.py::test_demos[path45-demo_multimesh_marking.py] - su... 719s FAILED python/demo/test.py::test_demos[path46-demo_block-matrix.py] - subproc... 719s FAILED python/demo/test.py::test_demos[path47-demo_contact-vi-snes.py] - subp... 719s FAILED python/demo/test.py::test_demos[path48-demo_submesh.py] - subprocess.C... 719s FAILED python/demo/test.py::test_demos[path49-demo_smoothing.py] - subprocess... 719s FAILED python/demo/test.py::test_demos[path50-demo_ale.py] - subprocess.Calle... 719s FAILED python/demo/test.py::test_demos[path51-demo_time-series.py] - subproce... 719s FAILED python/demo/test.py::test_demos[path52-demo_conditional.py] - subproce... 719s FAILED python/demo/test.py::test_demos[path53-demo_block-assembly-3D1D.py] - ... 719s FAILED python/demo/test.py::test_demos[path54-demo_extrapolation.py] - subpro... 719s FAILED python/demo/test.py::test_demos[path55-demo_overlapping-regions.py] - ... 719s FAILED python/demo/test.py::test_demos[path56-demo_meshview-3D2D.py] - subpro... 719s FAILED python/demo/test.py::test_demos[path57-demo_waveguide.py] - subprocess... 719s FAILED python/demo/test.py::test_demos[path58-demo_curl-curl.py] - subprocess... 719s FAILED python/demo/test.py::test_demos[path59-demo_advection-diffusion.py] - ... 719s FAILED python/demo/test.py::test_demos[path60-demo_matnest.py] - subprocess.C... 719s FAILED python/demo/test.py::test_demos[path61-demo_elementplot.py] - subproce... 719s FAILED python/demo/test.py::test_demos[path62-demo_multimesh-quadrature.py] 719s FAILED python/demo/test.py::test_demos[path63-demo_mesh-quality.py] - subproc... 719s FAILED python/demo/test.py::test_demos[path64-demo_parameters.py] - subproces... 719s FAILED python/demo/test.py::test_demos[path65-demo_contact-vi-tao.py] - subpr... 719s FAILED python/demo/test.py::test_demos[path66-demo_interpolation.py] - subpro... 719s FAILED python/demo/test.py::test_demos[path67-demo_meshview-3D3D.py] - subpro... 719s FAILED python/demo/test.py::test_demos[path68-demo_dg-advection-diffusion.py] 719s FAILED python/demo/test.py::test_demos[path69-demo_timing.py] - subprocess.Ca... 719s FAILED python/demo/test.py::test_demos[path70-demo_multimesh-stokes.py] - sub... 719s FAILED python/demo/test.py::test_demos[path71-demo_ghost-mesh.py] - subproces... 719s FAILED python/demo/test.py::test_demos[path72-demo_multistage-solver.py] - su... 719s FAILED python/demo/test.py::test_demos[path73-demo_buckling-tao.py] - subproc... 719s FAILED python/demo/test.py::test_demos[path74-demo_nonmatching-projection.py] 719s FAILED python/demo/test.py::test_demos[path75-demo_dg-poisson.py] - subproces... 719s FAILED python/demo/test.py::test_demos[path76-demo_refinement.py] - subproces... 719s FAILED python/demo/test.py::test_demos[path77-demo_sym-dirichlet-bc.py] - sub... 719s FAILED python/demo/test.py::test_demos[path78-demo_collision-detection.py] - ... 719s FAILED python/demo/test.py::test_demos[path80-demo_eval.py] - subprocess.Call... 719s FAILED python/demo/test.py::test_demos[path81-demo_block-assembly-3D2D.py] - ... 719s ====================== 76 failed, 6 deselected in 16.37s ======================= 720s autopkgtest [09:17:38]: test test-dolfin-python-demo: -----------------------] 720s autopkgtest [09:17:38]: test test-dolfin-python-demo: - - - - - - - - - - results - - - - - - - - - - 720s test-dolfin-python-demo FAIL non-zero exit status 1 721s autopkgtest [09:17:39]: test test-dolfin-python-pusimp: preparing testbed 844s autopkgtest [09:19:42]: testbed dpkg architecture: arm64 844s autopkgtest [09:19:42]: testbed apt version: 2.9.8 844s autopkgtest [09:19:42]: @@@@@@@@@@@@@@@@@@@@ test bed setup 845s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 846s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 846s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 846s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 846s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 846s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB] 846s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 846s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB] 846s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB] 846s Fetched 1793 kB in 1s (1773 kB/s) 847s Reading package lists... 849s Reading package lists... 850s Building dependency tree... 850s Reading state information... 850s Calculating upgrade... 851s The following NEW packages will be installed: 851s python3.13-gdbm 851s The following packages will be upgraded: 851s libpython3-stdlib python3 python3-gdbm python3-minimal 851s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 851s Need to get 101 kB of archives. 851s After this operation, 141 kB of additional disk space will be used. 851s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB] 852s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB] 852s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB] 852s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB] 852s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B] 852s Fetched 101 kB in 0s (261 kB/s) 853s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 853s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ... 853s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 853s Setting up python3-minimal (3.12.7-1) ... 853s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 853s Preparing to unpack .../python3_3.12.7-1_arm64.deb ... 853s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 853s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ... 853s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 853s Selecting previously unselected package python3.13-gdbm. 853s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ... 853s Unpacking python3.13-gdbm (3.13.0-2) ... 853s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ... 853s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 853s Setting up python3.13-gdbm (3.13.0-2) ... 853s Setting up libpython3-stdlib:arm64 (3.12.7-1) ... 853s Setting up python3 (3.12.7-1) ... 854s Setting up python3-gdbm:arm64 (3.12.7-1) ... 854s Processing triggers for man-db (2.12.1-3) ... 855s Reading package lists... 855s Building dependency tree... 855s Reading state information... 856s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 857s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 857s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 857s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 857s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 858s Reading package lists... 858s Reading package lists... 859s Building dependency tree... 859s Reading state information... 859s Calculating upgrade... 860s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 860s Reading package lists... 860s Building dependency tree... 860s Reading state information... 861s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 866s Reading package lists... 867s Building dependency tree... 867s Reading state information... 868s Starting pkgProblemResolver with broken count: 0 868s Starting 2 pkgProblemResolver with broken count: 0 868s Done 869s The following additional packages will be installed: 869s autoconf automake autopoint autotools-dev build-essential chrpath cmake 869s cmake-data cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-14 869s cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper debugedit 869s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dolfin-bin 869s dolfin-doc doxygen dwz fontconfig fontconfig-config fonts-dejavu-core 869s fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-mathjax g++ g++-14 869s g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 869s gcc-13-aarch64-linux-gnu gcc-13-base gcc-14 gcc-14-aarch64-linux-gnu 869s gcc-aarch64-linux-gnu gettext gfortran gfortran-13 869s gfortran-13-aarch64-linux-gnu gfortran-14 gfortran-14-aarch64-linux-gnu 869s gfortran-aarch64-linux-gnu graphviz icu-devtools intltool-debian libaec-dev 869s libaec0 libamd-comgr2 libamd3 libamdhip64-5 libann0 libaom3 869s libarchive-zip-perl libarpack2-dev libarpack2t64 libasan8 libblas-dev 869s libblas3 libblas64-3 libboost-atomic1.83-dev libboost-atomic1.83.0 869s libboost-chrono-dev libboost-chrono1.83-dev libboost-chrono1.83.0t64 869s libboost-date-time1.83-dev libboost-date-time1.83.0 libboost-dev 869s libboost-filesystem-dev libboost-filesystem1.83-dev 869s libboost-filesystem1.83.0 libboost-iostreams-dev libboost-iostreams1.83-dev 869s libboost-iostreams1.83.0 libboost-math-dev libboost-math1.83-dev 869s libboost-math1.83.0 libboost-mpi-dev libboost-mpi1.83-dev libboost-mpi1.83.0 869s libboost-program-options-dev libboost-program-options1.83-dev 869s libboost-program-options1.83.0 libboost-regex1.83-dev libboost-regex1.83.0 869s libboost-serialization-dev libboost-serialization1.83-dev 869s libboost-serialization1.83.0 libboost-system1.83-dev libboost-system1.83.0 869s libboost-thread-dev libboost-thread1.83-dev libboost-thread1.83.0 869s libboost-timer-dev libboost-timer1.83-dev libboost-timer1.83.0 869s libboost1.83-dev libbrotli-dev libbtf2 libc6-dbg libcairo2 libcamd3 libcc1-0 869s libccolamd3 libcdt5 libcgraph6 libcholmod5 libcolamd3 libcombblas2.0.0t64 869s libcurl4-openssl-dev libcxsparse4 libdatrie1 libde265-0 libdebhelper-perl 869s libdeflate0 libdolfin-dev libdolfin-dev-common libdolfin2019.2t64 869s libdolfin64-2019.2t64 libdolfin64-dev libdrm-amdgpu1 libeigen3-dev 869s libevent-2.1-7t64 libevent-dev libevent-extra-2.1-7t64 869s libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libexpat1-dev 869s libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 869s libfftw3-mpi-dev libfftw3-mpi3 libfftw3-single3 869s libfile-stripnondeterminism-perl libfmt10 libfontconfig1 libgcc-13-dev 869s libgcc-14-dev libgd3 libgfortran-13-dev libgfortran-14-dev libgfortran5 869s libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 869s libgnutls28-dev libgomp1 libgraphite2-3 libgts-0.7-5t64 libgvc6 libgvpr2 869s libharfbuzz0b libhdf5-mpi-dev libhdf5-openmpi-103-1t64 869s libhdf5-openmpi-cpp-103-1t64 libhdf5-openmpi-dev 869s libhdf5-openmpi-fortran-102t64 libhdf5-openmpi-hl-100t64 869s libhdf5-openmpi-hl-cpp-100t64 libhdf5-openmpi-hl-fortran-100t64 869s libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libhsa-runtime64-1 869s libhsakmt1 libhwasan0 libhwloc-dev libhwloc-plugins libhwloc15 869s libhypre-2.31.0 libhypre-dev libhypre64m-2.31.0 libhypre64m-dev libibmad5 869s libibumad3 libibverbs-dev libice6 libicu-dev libidn2-dev libimagequant0 869s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 869s libjpeg8 libjpeg8-dev libjs-jquery libjs-jquery-ui libjs-mathjax 869s libjs-modernizr libjs-sphinxdoc libjs-underscore libjson-perl libjsoncpp25 869s libklu2 liblab-gamut1 liblapack-dev liblapack3 liblapack64-3 libldl3 869s liblerc4 libllvm17t64 liblsan0 libltdl-dev libltdl7 liblzma-dev libmetis5 869s libmpc3 libmumps-5.6t64 libmumps-64pord-5.6t64 libmumps-dev 869s libmumps-headers-dev libmumps64-dev libmunge2 libnghttp2-dev libnl-3-dev 869s libnl-route-3-dev libnuma-dev libopenblas64-0 libopenblas64-0-pthread 869s libopenblas64-dev libopenblas64-pthread-dev libopenmpi-dev libopenmpi3t64 869s libp11-kit-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 869s libparpack2-dev libparpack2t64 libparu1 libpathplan4 libpciaccess0 869s libpetsc-real-dev libpetsc-real3.20 libpetsc-real3.20-dev 869s libpetsc3.20-dev-common libpetsc64-real-dev libpetsc64-real3.20 869s libpetsc64-real3.20-dev libpixman-1-0 libpkgconf3 libpmix-dev libpmix2t64 869s libpsl-dev libptscotch-7.0 libptscotch-dev libpython3-all-dev libpython3-dev 869s libpython3.12-dev libpython3.13 libpython3.13-dev libpython3.13-minimal 869s libpython3.13-stdlib libraqm0 librbio4 librdmacm1t64 librhash0 librtmp-dev 869s libscalapack-mpi-dev libscalapack-openmpi-dev libscalapack-openmpi2.2 869s libscotch-7.0 libscotch-dev libsharpyuv0 libslepc-real3.20 869s libslepc-real3.20-dev libslepc64-real3.20 libslepc64-real3.20-dev libsm6 869s libspex3 libspqr4 libssh2-1-dev libssl-dev libstdc++-14-dev 869s libsuitesparse-dev libsuitesparse-mongoose3 libsuitesparseconfig7 869s libsuperlu-dev libsuperlu-dist-dev libsuperlu-dist8 libsuperlu6 libsuperlu7 869s libsz2 libtasn1-6-dev libthai-data libthai0 libtiff6 libtool 869s libtrilinos-amesos-13.2 libtrilinos-aztecoo-13.2 libtrilinos-aztecoo-dev 869s libtrilinos-epetra-13.2 libtrilinos-epetraext-13.2 libtrilinos-galeri-13.2 869s libtrilinos-ifpack-13.2 libtrilinos-kokkos-13.2 libtrilinos-ml-13.2 869s libtrilinos-ml-dev libtrilinos-teuchos-13.2 libtrilinos-trilinosss-13.2 869s libtrilinos-trilinosss-dev libtrilinos-triutils-13.2 libtrilinos-zoltan-13.2 869s libtrilinos-zoltan-dev libtsan2 libubsan1 libucx0 libumfpack6 libunbound8 869s libwebp7 libx11-dev libxapian30 libxau-dev libxaw7 libxcb-render0 869s libxcb-shm0 libxcb1-dev libxdmcp-dev libxml2-dev libxmu6 libxnvctrl0 libxpm4 869s libxrender1 libxt6t64 libyaml-dev libzstd-dev m4 mpi-default-bin 869s mpi-default-dev nettle-dev ocl-icd-libopencl1 ocl-icd-opencl-dev 869s opencl-c-headers opencl-clhpp-headers openmpi-bin openmpi-common petsc-dev 869s petsc64-dev pkg-config pkgconf pkgconf-bin po-debconf pybind11-dev 869s python-petsc4py-doc python3-alabaster python3-all python3-all-dev 869s python3-defusedxml python3-dev python3-dijitso python3-distlib 869s python3-docutils python3-dolfin python3-dolfin-real python3-dolfin64-real 869s python3-ffc python3-fiat python3-filelock python3-imagesize 869s python3-iniconfig python3-mpi4py python3-mpmath python3-numpy 869s python3-packaging python3-petsc4py python3-petsc4py-64-real 869s python3-petsc4py-64-real3.20 python3-petsc4py-real python3-petsc4py-real3.20 869s python3-pip python3-pip-whl python3-pkgconfig python3-platformdirs 869s python3-pluggy python3-ply python3-pusimp python3-pybind11 python3-pytest 869s python3-roman python3-setuptools-whl python3-six python3-slepc4py 869s python3-slepc4py-64-real python3-slepc4py-64-real3.20 python3-slepc4py-real 869s python3-slepc4py-real3.20 python3-snowballstemmer python3-sphinx 869s python3-sphinx-rtd-theme python3-sphinxcontrib.jquery python3-sympy 869s python3-ufl-legacy python3-virtualenv python3-wheel python3-wheel-whl 869s python3.12-dev python3.13 python3.13-dev python3.13-minimal sgml-base 869s slepc-dev slepc64-dev sphinx-common sphinx-rtd-theme-common swig 869s trilinos-dev valgrind valgrind-mpi x11-common x11proto-dev xml-core 869s xorg-sgml-doctools xtrans-dev zlib1g-dev 869s Suggested packages: 869s autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format 869s elpa-cmake-mode ninja-build cpp-doc gcc-13-locales cpp-13-doc gcc-14-locales 869s cpp-14-doc dh-make flit python3-build python3-installer doxygen-latex 869s doxygen-doc doxygen-gui gcc-14-doc gcc-multilib manpages-dev flex bison gdb 869s gcc-doc gcc-13-doc gdb-aarch64-linux-gnu gettext-doc libasprintf-dev 869s libgettextpo-dev gfortran-doc gfortran-13-doc libcoarrays-dev 869s gfortran-14-doc gsfonts graphviz-doc liblapack-doc libboost-doc 869s libboost-graph1.83-dev libboost1.83-doc libboost-container1.83-dev 869s libboost-context1.83-dev libboost-contract1.83-dev 869s libboost-coroutine1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev 869s libboost-graph-parallel1.83-dev libboost-json1.83-dev 869s libboost-locale1.83-dev libboost-log1.83-dev libboost-mpi-python1.83-dev 869s libboost-nowide1.83-dev libboost-numpy1.83-dev libboost-python1.83-dev 869s libboost-random1.83-dev libboost-stacktrace1.83-dev libboost-test1.83-dev 869s libboost-type-erasure1.83-dev libboost-url1.83-dev libboost-wave1.83-dev 869s libboost1.83-tools-dev libmpfrc++-dev libntl-dev libcurl4-doc libidn-dev 869s libkrb5-dev libldap2-dev libeigen3-doc libfftw3-doc libgd-tools gmp-doc 869s libgmp10-doc libmpfr-dev dns-root-data gnutls-bin gnutls-doc libhdf5-doc 869s libheif-plugin-x265 libheif-plugin-ffmpegdec libheif-plugin-jpegdec 869s libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc 869s libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc icu-doc 869s libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc 869s libtool-doc liblzma-doc libnghttp2-doc openmpi-doc p11-kit-doc 869s libpetsc-real3.20-dbg petsc3.20-doc libluminate-dev libpetsc64-real3.20-dbg 869s scalapack-doc libslepc3.20-dev-examples slepc3.20-doc libssl-doc 869s libstdc++-14-doc libsuperlu-doc gcj-jdk trilinos-doc libx11-doc xapian-tools 869s libxcb-doc libyaml-doc m4-doc opencl-icd opencl-clhpp-headers-doc 869s libmail-box-perl pybind11-doc python-dijitso-doc docutils-doc 869s fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french 869s texlive-latex-base texlive-latex-recommended python-mpmath-doc python3-gmpy2 869s python3-matplotlib python-numpy-doc python-ply-doc python-slepc4py-doc 869s python3-stemmer dvipng dvisvgm fonts-freefont-otf imagemagick-6.q16 latexmk 869s sphinx-doc tex-gyre texlive-fonts-extra texlive-fonts-recommended 869s texlive-latex-extra texlive-plain-generic python-sympy-doc 869s python-ufl-legacy-doc python3.13-venv python3.13-doc binfmt-support 869s sgml-base-doc swig-doc swig-examples valgrind-dbg kcachegrind alleyoop 869s valkyrie 869s Recommended packages: 869s python3-matplotlib fonts-liberation libarchive-cpio-perl libgts-bin 869s libheif-plugin-aomenc javascript-common libjson-xs-perl 869s libcoarrays-openmpi-dev libpetsc3.20-dev-examples ksh | mksh | pdksh | zsh 869s libgraphblas-dev libtasn1-doc libgl-dev libmail-sendmail-perl libpaper-utils 869s python3-pil isympy-common gdb 869s The following NEW packages will be installed: 869s autoconf automake autopkgtest-satdep autopoint autotools-dev build-essential 869s chrpath cmake cmake-data cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-14 869s cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper debugedit 869s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dolfin-bin 869s dolfin-doc doxygen dwz fontconfig fontconfig-config fonts-dejavu-core 869s fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-mathjax g++ g++-14 869s g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 869s gcc-13-aarch64-linux-gnu gcc-13-base gcc-14 gcc-14-aarch64-linux-gnu 869s gcc-aarch64-linux-gnu gettext gfortran gfortran-13 869s gfortran-13-aarch64-linux-gnu gfortran-14 gfortran-14-aarch64-linux-gnu 869s gfortran-aarch64-linux-gnu graphviz icu-devtools intltool-debian libaec-dev 869s libaec0 libamd-comgr2 libamd3 libamdhip64-5 libann0 libaom3 869s libarchive-zip-perl libarpack2-dev libarpack2t64 libasan8 libblas-dev 869s libblas3 libblas64-3 libboost-atomic1.83-dev libboost-atomic1.83.0 869s libboost-chrono-dev libboost-chrono1.83-dev libboost-chrono1.83.0t64 869s libboost-date-time1.83-dev libboost-date-time1.83.0 libboost-dev 869s libboost-filesystem-dev libboost-filesystem1.83-dev 869s libboost-filesystem1.83.0 libboost-iostreams-dev libboost-iostreams1.83-dev 869s libboost-iostreams1.83.0 libboost-math-dev libboost-math1.83-dev 869s libboost-math1.83.0 libboost-mpi-dev libboost-mpi1.83-dev libboost-mpi1.83.0 869s libboost-program-options-dev libboost-program-options1.83-dev 869s libboost-program-options1.83.0 libboost-regex1.83-dev libboost-regex1.83.0 869s libboost-serialization-dev libboost-serialization1.83-dev 869s libboost-serialization1.83.0 libboost-system1.83-dev libboost-system1.83.0 869s libboost-thread-dev libboost-thread1.83-dev libboost-thread1.83.0 869s libboost-timer-dev libboost-timer1.83-dev libboost-timer1.83.0 869s libboost1.83-dev libbrotli-dev libbtf2 libc6-dbg libcairo2 libcamd3 libcc1-0 869s libccolamd3 libcdt5 libcgraph6 libcholmod5 libcolamd3 libcombblas2.0.0t64 869s libcurl4-openssl-dev libcxsparse4 libdatrie1 libde265-0 libdebhelper-perl 869s libdeflate0 libdolfin-dev libdolfin-dev-common libdolfin2019.2t64 869s libdolfin64-2019.2t64 libdolfin64-dev libdrm-amdgpu1 libeigen3-dev 869s libevent-2.1-7t64 libevent-dev libevent-extra-2.1-7t64 869s libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libexpat1-dev 869s libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 869s libfftw3-mpi-dev libfftw3-mpi3 libfftw3-single3 869s libfile-stripnondeterminism-perl libfmt10 libfontconfig1 libgcc-13-dev 869s libgcc-14-dev libgd3 libgfortran-13-dev libgfortran-14-dev libgfortran5 869s libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 869s libgnutls28-dev libgomp1 libgraphite2-3 libgts-0.7-5t64 libgvc6 libgvpr2 869s libharfbuzz0b libhdf5-mpi-dev libhdf5-openmpi-103-1t64 869s libhdf5-openmpi-cpp-103-1t64 libhdf5-openmpi-dev 869s libhdf5-openmpi-fortran-102t64 libhdf5-openmpi-hl-100t64 869s libhdf5-openmpi-hl-cpp-100t64 libhdf5-openmpi-hl-fortran-100t64 869s libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libhsa-runtime64-1 869s libhsakmt1 libhwasan0 libhwloc-dev libhwloc-plugins libhwloc15 869s libhypre-2.31.0 libhypre-dev libhypre64m-2.31.0 libhypre64m-dev libibmad5 869s libibumad3 libibverbs-dev libice6 libicu-dev libidn2-dev libimagequant0 869s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 869s libjpeg8 libjpeg8-dev libjs-jquery libjs-jquery-ui libjs-mathjax 869s libjs-modernizr libjs-sphinxdoc libjs-underscore libjson-perl libjsoncpp25 869s libklu2 liblab-gamut1 liblapack-dev liblapack3 liblapack64-3 libldl3 869s liblerc4 libllvm17t64 liblsan0 libltdl-dev libltdl7 liblzma-dev libmetis5 869s libmpc3 libmumps-5.6t64 libmumps-64pord-5.6t64 libmumps-dev 869s libmumps-headers-dev libmumps64-dev libmunge2 libnghttp2-dev libnl-3-dev 869s libnl-route-3-dev libnuma-dev libopenblas64-0 libopenblas64-0-pthread 869s libopenblas64-dev libopenblas64-pthread-dev libopenmpi-dev libopenmpi3t64 869s libp11-kit-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 869s libparpack2-dev libparpack2t64 libparu1 libpathplan4 libpciaccess0 869s libpetsc-real-dev libpetsc-real3.20 libpetsc-real3.20-dev 869s libpetsc3.20-dev-common libpetsc64-real-dev libpetsc64-real3.20 869s libpetsc64-real3.20-dev libpixman-1-0 libpkgconf3 libpmix-dev libpmix2t64 869s libpsl-dev libptscotch-7.0 libptscotch-dev libpython3-all-dev libpython3-dev 869s libpython3.12-dev libpython3.13 libpython3.13-dev libpython3.13-minimal 869s libpython3.13-stdlib libraqm0 librbio4 librdmacm1t64 librhash0 librtmp-dev 869s libscalapack-mpi-dev libscalapack-openmpi-dev libscalapack-openmpi2.2 869s libscotch-7.0 libscotch-dev libsharpyuv0 libslepc-real3.20 869s libslepc-real3.20-dev libslepc64-real3.20 libslepc64-real3.20-dev libsm6 869s libspex3 libspqr4 libssh2-1-dev libssl-dev libstdc++-14-dev 869s libsuitesparse-dev libsuitesparse-mongoose3 libsuitesparseconfig7 869s libsuperlu-dev libsuperlu-dist-dev libsuperlu-dist8 libsuperlu6 libsuperlu7 869s libsz2 libtasn1-6-dev libthai-data libthai0 libtiff6 libtool 869s libtrilinos-amesos-13.2 libtrilinos-aztecoo-13.2 libtrilinos-aztecoo-dev 869s libtrilinos-epetra-13.2 libtrilinos-epetraext-13.2 libtrilinos-galeri-13.2 869s libtrilinos-ifpack-13.2 libtrilinos-kokkos-13.2 libtrilinos-ml-13.2 869s libtrilinos-ml-dev libtrilinos-teuchos-13.2 libtrilinos-trilinosss-13.2 869s libtrilinos-trilinosss-dev libtrilinos-triutils-13.2 libtrilinos-zoltan-13.2 869s libtrilinos-zoltan-dev libtsan2 libubsan1 libucx0 libumfpack6 libunbound8 869s libwebp7 libx11-dev libxapian30 libxau-dev libxaw7 libxcb-render0 869s libxcb-shm0 libxcb1-dev libxdmcp-dev libxml2-dev libxmu6 libxnvctrl0 libxpm4 869s libxrender1 libxt6t64 libyaml-dev libzstd-dev m4 mpi-default-bin 869s mpi-default-dev nettle-dev ocl-icd-libopencl1 ocl-icd-opencl-dev 869s opencl-c-headers opencl-clhpp-headers openmpi-bin openmpi-common petsc-dev 869s petsc64-dev pkg-config pkgconf pkgconf-bin po-debconf pybind11-dev 869s python-petsc4py-doc python3-alabaster python3-all python3-all-dev 869s python3-defusedxml python3-dev python3-dijitso python3-distlib 869s python3-docutils python3-dolfin python3-dolfin-real python3-dolfin64-real 869s python3-ffc python3-fiat python3-filelock python3-imagesize 869s python3-iniconfig python3-mpi4py python3-mpmath python3-numpy 869s python3-packaging python3-petsc4py python3-petsc4py-64-real 869s python3-petsc4py-64-real3.20 python3-petsc4py-real python3-petsc4py-real3.20 869s python3-pip python3-pip-whl python3-pkgconfig python3-platformdirs 869s python3-pluggy python3-ply python3-pusimp python3-pybind11 python3-pytest 869s python3-roman python3-setuptools-whl python3-six python3-slepc4py 869s python3-slepc4py-64-real python3-slepc4py-64-real3.20 python3-slepc4py-real 869s python3-slepc4py-real3.20 python3-snowballstemmer python3-sphinx 869s python3-sphinx-rtd-theme python3-sphinxcontrib.jquery python3-sympy 869s python3-ufl-legacy python3-virtualenv python3-wheel python3-wheel-whl 869s python3.12-dev python3.13 python3.13-dev python3.13-minimal sgml-base 869s slepc-dev slepc64-dev sphinx-common sphinx-rtd-theme-common swig 869s trilinos-dev valgrind valgrind-mpi x11-common x11proto-dev xml-core 869s xorg-sgml-doctools xtrans-dev zlib1g-dev 869s 0 upgraded, 428 newly installed, 0 to remove and 0 not upgraded. 869s Need to get 441 MB/441 MB of archives. 869s After this operation, 1872 MB of additional disk space will be used. 869s Get:1 /tmp/autopkgtest.ShOyTP/4-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [1200 B] 869s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-lato all 2.015-1 [2781 kB] 870s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB] 870s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.0-2 [2100 kB] 870s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 sgml-base all 1.31 [11.4 kB] 870s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 m4 arm64 1.4.19-4build1 [240 kB] 870s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 autoconf all 2.72-3 [382 kB] 870s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 autotools-dev all 20220109.1 [44.9 kB] 870s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 870s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 autopoint all 0.22.5-2 [616 kB] 870s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 870s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 870s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [10.6 MB] 871s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-8ubuntu1 [1028 B] 871s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [5452 B] 871s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.1.0-2ubuntu1 [22.5 kB] 871s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 14.2.0-8ubuntu1 [49.7 kB] 871s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB] 871s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 14.2.0-8ubuntu1 [27.8 kB] 871s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 14.2.0-8ubuntu1 [2893 kB] 871s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 14.2.0-8ubuntu1 [1283 kB] 871s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 14.2.0-8ubuntu1 [2686 kB] 871s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 14.2.0-8ubuntu1 [1151 kB] 871s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 14.2.0-8ubuntu1 [1598 kB] 871s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-8ubuntu1 [2594 kB] 871s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [20.9 MB] 871s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-8ubuntu1 [518 kB] 871s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1200 B] 871s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.1.0-2ubuntu1 [4994 B] 871s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-8ubuntu1 [2476 kB] 871s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [12.1 MB] 872s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-8ubuntu1 [19.9 kB] 872s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [958 B] 872s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.1.0-2ubuntu1 [1080 B] 872s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 872s Get:36 http://ftpmaster.internal/ubuntu plucky/universe arm64 chrpath arm64 0.18-1 [13.2 kB] 872s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libjsoncpp25 arm64 1.9.5-6build1 [78.2 kB] 872s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 librhash0 arm64 1.4.3-3build1 [126 kB] 872s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 cmake-data all 3.30.3-1 [2246 kB] 872s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 cmake arm64 3.30.3-1 [10.9 MB] 872s Get:41 http://ftpmaster.internal/ubuntu plucky/universe arm64 gcc-13-base arm64 13.3.0-6ubuntu2 [51.4 kB] 872s Get:42 http://ftpmaster.internal/ubuntu plucky/universe arm64 cpp-13-aarch64-linux-gnu arm64 13.3.0-6ubuntu2 [9535 kB] 873s Get:43 http://ftpmaster.internal/ubuntu plucky/universe arm64 cpp-13 arm64 13.3.0-6ubuntu2 [1030 B] 873s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 873s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgcc-13-dev arm64 13.3.0-6ubuntu2 [2456 kB] 873s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 gcc-13-aarch64-linux-gnu arm64 13.3.0-6ubuntu2 [18.7 MB] 873s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 gcc-13 arm64 13.3.0-6ubuntu2 [484 kB] 873s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libtool all 2.4.7-7build1 [166 kB] 873s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-autoreconf all 20 [16.1 kB] 873s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] 873s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 873s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-strip-nondeterminism all 1.14.0-1 [5058 B] 873s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 debugedit arm64 1:5.1-1 [45.9 kB] 873s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 dwz arm64 0.15-1build6 [113 kB] 873s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 gettext arm64 0.22.5-2 [930 kB] 873s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 873s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] 873s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 debhelper all 13.20ubuntu1 [893 kB] 873s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 dh-python all 6.20241024 [112 kB] 873s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 xml-core all 0.19 [20.3 kB] 873s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 docutils-common all 0.21.2+dfsg-2 [131 kB] 873s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfmt10 arm64 10.1.1+ds1-4 [75.6 kB] 873s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 libxapian30 arm64 1.4.25-1 [672 kB] 873s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 doxygen arm64 1.9.8+ds-2ubuntu2 [5022 kB] 873s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 873s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 873s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB] 873s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB] 873s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-1.1ubuntu2 [190 kB] 873s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 873s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 873s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB] 873s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-8ubuntu1 [498 kB] 873s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [11.4 MB] 874s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-8ubuntu1 [11.9 kB] 874s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1022 B] 874s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.1.0-2ubuntu1 [1162 B] 874s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgfortran-13-dev arm64 13.3.0-6ubuntu2 [481 kB] 874s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 gfortran-13-aarch64-linux-gnu arm64 13.3.0-6ubuntu2 [10.2 MB] 875s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 gfortran-13 arm64 13.3.0-6ubuntu2 [13.9 kB] 875s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 libann0 arm64 1.1.2+doc-9build1 [25.7 kB] 875s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcdt5 arm64 2.42.4-2build3 [21.3 kB] 875s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcgraph6 arm64 2.42.4-2build3 [45.1 kB] 875s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [16.3 kB] 875s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libaom3 arm64 3.11.0~rc1-1 [1837 kB] 875s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif-plugin-aomdec arm64 1.18.1-2 [10.9 kB] 875s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 libde265-0 arm64 1.0.15-1build4 [146 kB] 875s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif-plugin-libde265 arm64 1.18.1-2 [8612 B] 875s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif1 arm64 1.18.1-2 [274 kB] 875s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 875s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu2 [163 kB] 875s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 875s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 875s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.0.1-1 [487 kB] 875s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 libraqm0 arm64 0.10.1-1build1 [14.7 kB] 875s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.22-1 [46.2 kB] 875s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 875s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu2 [154 kB] 875s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.4.0-0.1 [192 kB] 875s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 875s Get:101 http://ftpmaster.internal/ubuntu plucky/main arm64 libxpm4 arm64 1:3.5.17-1build2 [35.1 kB] 875s Get:102 http://ftpmaster.internal/ubuntu plucky/main arm64 libgd3 arm64 2.3.3-12ubuntu3 [122 kB] 875s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgts-0.7-5t64 arm64 0.7.6+darcs121130-5.2build1 [154 kB] 875s Get:104 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 875s Get:105 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 875s Get:106 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 875s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 875s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 875s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 libltdl7 arm64 2.4.7-7build1 [40.4 kB] 875s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 875s Get:111 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 875s Get:112 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 875s Get:113 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.54.0+ds-3 [234 kB] 876s Get:114 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.54.0+ds-3 [48.9 kB] 876s Get:115 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.54.0+ds-3 [27.5 kB] 876s Get:116 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpathplan4 arm64 2.42.4-2build3 [23.4 kB] 876s Get:117 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgvc6 arm64 2.42.4-2build3 [706 kB] 876s Get:118 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgvpr2 arm64 2.42.4-2build3 [187 kB] 876s Get:119 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblab-gamut1 arm64 2.42.4-2build3 [1840 kB] 876s Get:120 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 876s Get:121 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 876s Get:122 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 876s Get:123 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 876s Get:124 http://ftpmaster.internal/ubuntu plucky/main arm64 libxmu6 arm64 2:1.1.3-3build2 [47.5 kB] 876s Get:125 http://ftpmaster.internal/ubuntu plucky/main arm64 libxaw7 arm64 2:1.0.16-1 [184 kB] 876s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 graphviz arm64 2.42.4-2build3 [619 kB] 876s Get:127 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 74.2-1ubuntu4 [210 kB] 876s Get:128 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 876s Get:129 http://ftpmaster.internal/ubuntu plucky/universe arm64 libllvm17t64 arm64 1:17.0.6-18 [24.9 MB] 877s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3build2 [14.1 MB] 878s Get:131 http://ftpmaster.internal/ubuntu plucky/main arm64 libsuitesparseconfig7 arm64 1:7.8.3+dfsg-2 [13.1 kB] 878s Get:132 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamd3 arm64 1:7.8.3+dfsg-2 [26.1 kB] 878s Get:133 http://ftpmaster.internal/ubuntu plucky/main arm64 libdrm-amdgpu1 arm64 2.4.123-1 [20.9 kB] 878s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhsakmt1 arm64 5.7.0-1build1 [63.6 kB] 878s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhsa-runtime64-1 arm64 5.7.1-2build1 [286 kB] 878s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamdhip64-5 arm64 5.7.1-5 [9704 kB] 878s Get:137 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 878s Get:138 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 878s Get:139 http://ftpmaster.internal/ubuntu plucky/universe arm64 libarpack2t64 arm64 3.9.1-1.1ubuntu1 [94.3 kB] 878s Get:140 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.0-3build2 [120 kB] 878s Get:141 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.0-3build2 [4419 kB] 878s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 libarpack2-dev arm64 3.9.1-1.1ubuntu1 [108 kB] 878s Get:143 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas64-3 arm64 3.12.0-3build2 [144 kB] 878s Get:144 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost1.83-dev arm64 1.83.0-3.2ubuntu2 [10.7 MB] 879s Get:145 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-atomic1.83.0 arm64 1.83.0-3.2ubuntu2 [239 kB] 879s Get:146 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-atomic1.83-dev arm64 1.83.0-3.2ubuntu2 [234 kB] 879s Get:147 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-chrono1.83.0t64 arm64 1.83.0-3.2ubuntu2 [244 kB] 879s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-chrono1.83-dev arm64 1.83.0-3.2ubuntu2 [247 kB] 879s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-chrono-dev arm64 1.83.0.2ubuntu1 [4832 B] 879s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-date-time1.83.0 arm64 1.83.0-3.2ubuntu2 [236 kB] 879s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-serialization1.83.0 arm64 1.83.0-3.2ubuntu2 [338 kB] 879s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-serialization1.83-dev arm64 1.83.0-3.2ubuntu2 [392 kB] 879s Get:153 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-date-time1.83-dev arm64 1.83.0-3.2ubuntu2 [239 kB] 879s Get:154 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-dev arm64 1.83.0.2ubuntu1 [4468 B] 879s Get:155 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-filesystem1.83.0 arm64 1.83.0-3.2ubuntu2 [282 kB] 879s Get:156 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-system1.83.0 arm64 1.83.0-3.2ubuntu2 [236 kB] 879s Get:157 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-system1.83-dev arm64 1.83.0-3.2ubuntu2 [231 kB] 879s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-filesystem1.83-dev arm64 1.83.0-3.2ubuntu2 [302 kB] 879s Get:159 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-filesystem-dev arm64 1.83.0.2ubuntu1 [4256 B] 879s Get:160 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-regex1.83.0 arm64 1.83.0-3.2ubuntu2 [331 kB] 879s Get:161 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 74.2-1ubuntu4 [11.9 MB] 879s Get:162 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-regex1.83-dev arm64 1.83.0-3.2ubuntu2 [351 kB] 879s Get:163 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-iostreams1.83.0 arm64 1.83.0-3.2ubuntu2 [259 kB] 879s Get:164 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-iostreams1.83-dev arm64 1.83.0-3.2ubuntu2 [266 kB] 879s Get:165 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-iostreams-dev arm64 1.83.0.2ubuntu1 [4212 B] 879s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-math1.83.0 arm64 1.83.0-3.2ubuntu2 [444 kB] 879s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-math1.83-dev arm64 1.83.0-3.2ubuntu2 [590 kB] 879s Get:168 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-math-dev arm64 1.83.0.2ubuntu1 [4434 B] 879s Get:169 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10 [7922 B] 879s Get:170 http://ftpmaster.internal/ubuntu plucky/main arm64 librdmacm1t64 arm64 52.0-2ubuntu1 [71.5 kB] 879s Get:171 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfabric1 arm64 1.17.0-3ubuntu1 [542 kB] 879s Get:172 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhwloc15 arm64 2.11.2-1 [162 kB] 879s Get:173 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmunge2 arm64 0.5.15-4build1 [14.9 kB] 879s Get:174 http://ftpmaster.internal/ubuntu plucky/main arm64 libpciaccess0 arm64 0.17-3build1 [18.9 kB] 879s Get:175 http://ftpmaster.internal/ubuntu plucky/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu4 [12.4 kB] 879s Get:176 http://ftpmaster.internal/ubuntu plucky/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1build1 [37.6 kB] 879s Get:177 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhwloc-plugins arm64 2.11.2-1 [15.8 kB] 879s Get:178 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpmix2t64 arm64 5.0.3-2 [662 kB] 879s Get:179 http://ftpmaster.internal/ubuntu plucky/main arm64 libibumad3 arm64 52.0-2ubuntu1 [29.3 kB] 879s Get:180 http://ftpmaster.internal/ubuntu plucky/main arm64 libibmad5 arm64 52.0-2ubuntu1 [43.1 kB] 879s Get:181 http://ftpmaster.internal/ubuntu plucky/universe arm64 libucx0 arm64 1.17.0+ds-3build1 [1093 kB] 879s Get:182 http://ftpmaster.internal/ubuntu plucky/universe arm64 libopenmpi3t64 arm64 4.1.6-13.3ubuntu2 [2487 kB] 879s Get:183 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-mpi1.83.0 arm64 1.83.0-3.2ubuntu2 [269 kB] 879s Get:184 http://ftpmaster.internal/ubuntu plucky/universe arm64 openmpi-common all 4.1.6-13.3ubuntu2 [170 kB] 879s Get:185 http://ftpmaster.internal/ubuntu plucky/main arm64 libnl-3-dev arm64 3.7.0-0.3build2 [105 kB] 879s Get:186 http://ftpmaster.internal/ubuntu plucky/main arm64 libnl-route-3-dev arm64 3.7.0-0.3build2 [226 kB] 879s Get:187 http://ftpmaster.internal/ubuntu plucky/main arm64 libibverbs-dev arm64 52.0-2ubuntu1 [697 kB] 880s Get:188 http://ftpmaster.internal/ubuntu plucky/main arm64 libnuma-dev arm64 2.0.18-1build1 [39.6 kB] 880s Get:189 http://ftpmaster.internal/ubuntu plucky/main arm64 libltdl-dev arm64 2.4.7-7build1 [170 kB] 880s Get:190 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhwloc-dev arm64 2.11.2-1 [265 kB] 880s Get:191 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10 [140 kB] 880s Get:192 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-extra-2.1-7t64 arm64 2.1.12-stable-10 [62.0 kB] 880s Get:193 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-openssl-2.1-7t64 arm64 2.1.12-stable-10 [14.7 kB] 880s Get:194 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-dev arm64 2.1.12-stable-10 [283 kB] 880s Get:195 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 880s Get:196 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpmix-dev arm64 5.0.3-2 [4051 kB] 880s Get:197 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 880s Get:198 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 880s Get:199 http://ftpmaster.internal/ubuntu plucky/universe arm64 openmpi-bin arm64 4.1.6-13.3ubuntu2 [114 kB] 880s Get:200 http://ftpmaster.internal/ubuntu plucky/universe arm64 libopenmpi-dev arm64 4.1.6-13.3ubuntu2 [864 kB] 880s Get:201 http://ftpmaster.internal/ubuntu plucky/universe arm64 mpi-default-dev arm64 1.17 [3104 B] 880s Get:202 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-mpi1.83-dev arm64 1.83.0-3.2ubuntu2 [299 kB] 880s Get:203 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-mpi-dev arm64 1.83.0.2ubuntu1 [4308 B] 880s Get:204 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-program-options1.83.0 arm64 1.83.0-3.2ubuntu2 [318 kB] 880s Get:205 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-program-options1.83-dev arm64 1.83.0-3.2ubuntu2 [391 kB] 880s Get:206 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-program-options-dev arm64 1.83.0.2ubuntu1 [4250 B] 880s Get:207 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-serialization-dev arm64 1.83.0.2ubuntu1 [4442 B] 880s Get:208 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-thread1.83.0 arm64 1.83.0-3.2ubuntu2 [276 kB] 880s Get:209 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-thread1.83-dev arm64 1.83.0-3.2ubuntu2 [283 kB] 880s Get:210 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-thread-dev arm64 1.83.0.2ubuntu1 [4248 B] 880s Get:211 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-timer1.83.0 arm64 1.83.0-3.2ubuntu2 [241 kB] 880s Get:212 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-timer1.83-dev arm64 1.83.0-3.2ubuntu2 [237 kB] 880s Get:213 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-timer-dev arm64 1.83.0.2ubuntu1 [4352 B] 880s Get:214 http://ftpmaster.internal/ubuntu plucky/main arm64 libbrotli-dev arm64 1.1.0-2build2 [360 kB] 881s Get:215 http://ftpmaster.internal/ubuntu plucky/universe arm64 libbtf2 arm64 1:7.8.3+dfsg-2 [13.6 kB] 881s Get:216 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcamd3 arm64 1:7.8.3+dfsg-2 [22.6 kB] 881s Get:217 http://ftpmaster.internal/ubuntu plucky/universe arm64 libccolamd3 arm64 1:7.8.3+dfsg-2 [25.5 kB] 881s Get:218 http://ftpmaster.internal/ubuntu plucky/main arm64 libcolamd3 arm64 1:7.8.3+dfsg-2 [18.2 kB] 881s Get:219 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcholmod5 arm64 1:7.8.3+dfsg-2 [614 kB] 881s Get:220 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcombblas2.0.0t64 arm64 2.0.0-3.1build3 [267 kB] 881s Get:221 http://ftpmaster.internal/ubuntu plucky/main arm64 libidn2-dev arm64 2.3.7-2build2 [120 kB] 881s Get:222 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 881s Get:223 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 881s Get:224 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 881s Get:225 http://ftpmaster.internal/ubuntu plucky/main arm64 libnghttp2-dev arm64 1.64.0-1 [120 kB] 881s Get:226 http://ftpmaster.internal/ubuntu plucky/main arm64 libpsl-dev arm64 0.21.2-1.1build1 [77.2 kB] 881s Get:227 http://ftpmaster.internal/ubuntu plucky/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-2ubuntu7 [10.1 kB] 881s Get:228 http://ftpmaster.internal/ubuntu plucky/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-2ubuntu7 [335 kB] 881s Get:229 http://ftpmaster.internal/ubuntu plucky/main arm64 libunbound8 arm64 1.20.0-1ubuntu2.1 [431 kB] 881s Get:230 http://ftpmaster.internal/ubuntu plucky/main arm64 libgnutls-dane0t64 arm64 3.8.6-2ubuntu1 [24.0 kB] 881s Get:231 http://ftpmaster.internal/ubuntu plucky/main arm64 libgnutls-openssl27t64 arm64 3.8.6-2ubuntu1 [24.0 kB] 881s Get:232 http://ftpmaster.internal/ubuntu plucky/main arm64 libp11-kit-dev arm64 0.25.5-2ubuntu1 [22.7 kB] 881s Get:233 http://ftpmaster.internal/ubuntu plucky/main arm64 libtasn1-6-dev arm64 4.19.0-3build1 [90.6 kB] 881s Get:234 http://ftpmaster.internal/ubuntu plucky/main arm64 nettle-dev arm64 3.10-1 [1189 kB] 881s Get:235 http://ftpmaster.internal/ubuntu plucky/main arm64 libgnutls28-dev arm64 3.8.6-2ubuntu1 [1132 kB] 881s Get:236 http://ftpmaster.internal/ubuntu plucky/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2build7 [69.4 kB] 881s Get:237 http://ftpmaster.internal/ubuntu plucky/main arm64 libssl-dev arm64 3.3.1-2ubuntu2 [3176 kB] 881s Get:238 http://ftpmaster.internal/ubuntu plucky/main arm64 libssh2-1-dev arm64 1.11.1-1 [286 kB] 881s Get:239 http://ftpmaster.internal/ubuntu plucky/main arm64 libzstd-dev arm64 1.5.6+dfsg-1 [352 kB] 881s Get:240 http://ftpmaster.internal/ubuntu plucky/main arm64 libcurl4-openssl-dev arm64 8.9.1-2ubuntu2 [491 kB] 881s Get:241 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcxsparse4 arm64 1:7.8.3+dfsg-2 [68.8 kB] 881s Get:242 http://ftpmaster.internal/ubuntu plucky/universe arm64 libdolfin-dev-common all 2019.2.0~legacy20240219.1c52e83-10ubuntu1 [196 kB] 881s Get:243 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 881s Get:244 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-openmpi-103-1t64 arm64 1.10.10+repack-4ubuntu3 [1258 kB] 881s Get:245 http://ftpmaster.internal/ubuntu plucky/main arm64 libfftw3-double3 arm64 3.3.10-1ubuntu4 [392 kB] 881s Get:246 http://ftpmaster.internal/ubuntu plucky/main arm64 libfftw3-long3 arm64 3.3.10-1ubuntu4 [652 kB] 881s Get:247 http://ftpmaster.internal/ubuntu plucky/main arm64 libfftw3-single3 arm64 3.3.10-1ubuntu4 [604 kB] 881s Get:248 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfftw3-mpi3 arm64 3.3.10-1ubuntu4 [45.6 kB] 881s Get:249 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmetis5 arm64 5.1.0.dfsg-7build3 [176 kB] 881s Get:250 http://ftpmaster.internal/ubuntu plucky/universe arm64 libptscotch-7.0 arm64 7.0.5-1ubuntu1 [662 kB] 881s Get:251 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsuperlu-dist8 arm64 8.2.1+dfsg1-2 [576 kB] 881s Get:252 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhypre-2.31.0 arm64 2.31.0-1exp2 [1723 kB] 881s Get:253 http://ftpmaster.internal/ubuntu plucky/universe arm64 libklu2 arm64 1:7.8.3+dfsg-2 [77.0 kB] 881s Get:254 http://ftpmaster.internal/ubuntu plucky/universe arm64 mpi-default-bin arm64 1.17 [2296 B] 881s Get:255 http://ftpmaster.internal/ubuntu plucky/universe arm64 libscalapack-openmpi2.2 arm64 2.2.1-3.1ubuntu2 [1610 kB] 881s Get:256 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmumps-5.6t64 arm64 5.6.2-2.1build3 [1929 kB] 881s Get:257 http://ftpmaster.internal/ubuntu plucky/universe arm64 libspqr4 arm64 1:7.8.3+dfsg-2 [130 kB] 881s Get:258 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsuperlu6 arm64 6.0.1+dfsg1-1build3 [170 kB] 881s Get:259 http://ftpmaster.internal/ubuntu plucky/universe arm64 libscotch-7.0 arm64 7.0.5-1ubuntu1 [428 kB] 881s Get:260 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-kokkos-13.2 arm64 13.2.0-6 [103 kB] 881s Get:261 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-teuchos-13.2 arm64 13.2.0-6 [1071 kB] 881s Get:262 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-epetra-13.2 arm64 13.2.0-6 [414 kB] 881s Get:263 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-triutils-13.2 arm64 13.2.0-6 [117 kB] 881s Get:264 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-epetraext-13.2 arm64 13.2.0-6 [408 kB] 881s Get:265 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-trilinosss-13.2 arm64 13.2.0-6 [87.2 kB] 881s Get:266 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-amesos-13.2 arm64 13.2.0-6 [101 kB] 882s Get:267 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-aztecoo-13.2 arm64 13.2.0-6 [205 kB] 882s Get:268 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-galeri-13.2 arm64 13.2.0-6 [87.4 kB] 882s Get:269 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-ifpack-13.2 arm64 13.2.0-6 [396 kB] 882s Get:270 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-zoltan-13.2 arm64 13.2.0-6 [380 kB] 882s Get:271 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-ml-13.2 arm64 13.2.0-6 [926 kB] 882s Get:272 http://ftpmaster.internal/ubuntu plucky/universe arm64 libumfpack6 arm64 1:7.8.3+dfsg-2 [249 kB] 882s Get:273 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpetsc-real3.20 arm64 3.20.6+dfsg1-3ubuntu3 [5991 kB] 882s Get:274 http://ftpmaster.internal/ubuntu plucky/universe arm64 libparpack2t64 arm64 3.9.1-1.1ubuntu1 [84.9 kB] 882s Get:275 http://ftpmaster.internal/ubuntu plucky/universe arm64 libslepc-real3.20 arm64 3.20.2+dfsg1-2build1 [1014 kB] 882s Get:276 http://ftpmaster.internal/ubuntu plucky/universe arm64 libdolfin2019.2t64 arm64 2019.2.0~legacy20240219.1c52e83-10ubuntu1 [1977 kB] 882s Get:277 http://ftpmaster.internal/ubuntu plucky/universe arm64 libopenblas64-0-pthread arm64 0.3.28+ds-3 [5676 kB] 882s Get:278 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack64-3 arm64 3.12.0-3build2 [2188 kB] 883s Get:279 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhypre64m-2.31.0 arm64 2.31.0-1exp2 [1582 kB] 883s Get:280 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmumps-64pord-5.6t64 arm64 5.6.2-2.1build3 [1927 kB] 883s Get:281 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpetsc64-real3.20 arm64 3.20.6+dfsg1-3ubuntu3 [5886 kB] 883s Get:282 http://ftpmaster.internal/ubuntu plucky/universe arm64 libslepc64-real3.20 arm64 3.20.2+dfsg1-2build1 [1011 kB] 883s Get:283 http://ftpmaster.internal/ubuntu plucky/universe arm64 libdolfin64-2019.2t64 arm64 2019.2.0~legacy20240219.1c52e83-10ubuntu1 [1977 kB] 883s Get:284 http://ftpmaster.internal/ubuntu plucky/main arm64 pkg-config arm64 1.8.1-4 [7362 B] 883s Get:285 http://ftpmaster.internal/ubuntu plucky/universe arm64 libeigen3-dev all 3.4.0-4build1 [1055 kB] 883s Get:286 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-openmpi-fortran-102t64 arm64 1.10.10+repack-4ubuntu3 [87.9 kB] 883s Get:287 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-openmpi-hl-100t64 arm64 1.10.10+repack-4ubuntu3 [56.8 kB] 883s Get:288 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-openmpi-hl-fortran-100t64 arm64 1.10.10+repack-4ubuntu3 [31.0 kB] 883s Get:289 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-openmpi-cpp-103-1t64 arm64 1.10.10+repack-4ubuntu3 [118 kB] 884s Get:290 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-openmpi-hl-cpp-100t64 arm64 1.10.10+repack-4ubuntu3 [11.1 kB] 884s Get:291 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec-dev arm64 1.1.3-1 [19.3 kB] 884s Get:292 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu2 [305 kB] 884s Get:293 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 884s Get:294 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 884s Get:295 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-openmpi-dev arm64 1.10.10+repack-4ubuntu3 [3136 kB] 884s Get:296 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-mpi-dev arm64 1.10.10+repack-4ubuntu3 [4616 B] 884s Get:297 http://ftpmaster.internal/ubuntu plucky/universe arm64 libldl3 arm64 1:7.8.3+dfsg-2 [13.5 kB] 884s Get:298 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsuitesparse-mongoose3 arm64 1:7.8.3+dfsg-2 [32.8 kB] 884s Get:299 http://ftpmaster.internal/ubuntu plucky/universe arm64 librbio4 arm64 1:7.8.3+dfsg-2 [26.3 kB] 884s Get:300 http://ftpmaster.internal/ubuntu plucky/universe arm64 libspex3 arm64 1:7.8.3+dfsg-2 [45.4 kB] 884s Get:301 http://ftpmaster.internal/ubuntu plucky/universe arm64 libparu1 arm64 1:7.8.3+dfsg-2 [52.2 kB] 884s Get:302 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsuitesparse-dev arm64 1:7.8.3+dfsg-2 [1489 kB] 884s Get:303 http://ftpmaster.internal/ubuntu plucky/universe arm64 libscotch-dev arm64 7.0.5-1ubuntu1 [1587 kB] 884s Get:304 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.2-2 [179 kB] 884s Get:305 http://ftpmaster.internal/ubuntu plucky/main arm64 libxml2-dev arm64 2.12.7+dfsg-3 [73.0 kB] 885s Get:306 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB] 885s Get:307 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mpi4py arm64 3.1.6-9ubuntu1 [449 kB] 885s Get:308 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-dijitso all 2019.2.0~git20190418.c92dcb0-4 [24.3 kB] 885s Get:309 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mpmath all 1.3.0-1 [425 kB] 885s Get:310 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sympy all 1.13.3-1 [4228 kB] 885s Get:311 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fiat all 2019.2.0~git20210419.7d418fa-5 [69.2 kB] 885s Get:312 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ufl-legacy all 1:2022.3.0-3 [154 kB] 885s Get:313 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ffc all 2019.2.0~legacy20230509.35df986-3 [227 kB] 885s Get:314 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 886s Get:315 http://ftpmaster.internal/ubuntu plucky/universe arm64 libptscotch-dev arm64 7.0.5-1ubuntu1 [1352 kB] 886s Get:316 http://ftpmaster.internal/ubuntu plucky/universe arm64 libscalapack-openmpi-dev arm64 2.2.1-3.1ubuntu2 [7490 B] 886s Get:317 http://ftpmaster.internal/ubuntu plucky/universe arm64 libscalapack-mpi-dev arm64 2.2.1-3.1ubuntu2 [2324 B] 886s Get:318 http://ftpmaster.internal/ubuntu plucky/main arm64 libfftw3-bin arm64 3.3.10-1ubuntu4 [33.5 kB] 886s Get:319 http://ftpmaster.internal/ubuntu plucky/main arm64 libfftw3-dev arm64 3.3.10-1ubuntu4 [1521 kB] 886s Get:320 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfftw3-mpi-dev arm64 3.3.10-1ubuntu4 [52.8 kB] 886s Get:321 http://ftpmaster.internal/ubuntu plucky/universe arm64 opencl-c-headers all 3.0~2024.05.08-1 [47.6 kB] 886s Get:322 http://ftpmaster.internal/ubuntu plucky/universe arm64 opencl-clhpp-headers all 3.0~2024.05.08-1ubuntu1 [50.9 kB] 886s Get:323 http://ftpmaster.internal/ubuntu plucky/universe arm64 ocl-icd-opencl-dev arm64 2.3.2-1build1 [2446 B] 886s Get:324 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsuperlu7 arm64 7.0.0+dfsg1-2 [171 kB] 886s Get:325 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsuperlu-dev arm64 7.0.0+dfsg1-2 [20.8 kB] 886s Get:326 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsuperlu-dist-dev arm64 8.2.1+dfsg1-2 [962 kB] 886s Get:327 http://ftpmaster.internal/ubuntu plucky/main arm64 xorg-sgml-doctools all 1:1.11-1.1 [10.9 kB] 886s Get:328 http://ftpmaster.internal/ubuntu plucky/main arm64 x11proto-dev all 2024.1-1 [606 kB] 886s Get:329 http://ftpmaster.internal/ubuntu plucky/main arm64 libxau-dev arm64 1:1.0.11-1 [10.2 kB] 886s Get:330 http://ftpmaster.internal/ubuntu plucky/main arm64 libxdmcp-dev arm64 1:1.1.3-0ubuntu6 [26.3 kB] 886s Get:331 http://ftpmaster.internal/ubuntu plucky/main arm64 xtrans-dev all 1.4.0-1 [68.9 kB] 886s Get:332 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb1-dev arm64 1.17.0-2 [91.7 kB] 886s Get:333 http://ftpmaster.internal/ubuntu plucky/main arm64 libx11-dev arm64 2:1.8.10-2 [746 kB] 886s Get:334 http://ftpmaster.internal/ubuntu plucky/main arm64 libyaml-dev arm64 0.2.5-1build1 [63.4 kB] 886s Get:335 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpetsc3.20-dev-common all 3.20.6+dfsg1-3ubuntu3 [305 kB] 886s Get:336 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhypre-dev arm64 2.31.0-1exp2 [2104 kB] 886s Get:337 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmumps-headers-dev all 5.6.2-2.1build3 [21.2 kB] 886s Get:338 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmumps-dev arm64 5.6.2-2.1build3 [1974 kB] 886s Get:339 http://ftpmaster.internal/ubuntu plucky/universe arm64 trilinos-dev arm64 13.2.0-6 [12.9 kB] 886s Get:340 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-aztecoo-dev arm64 13.2.0-6 [50.2 kB] 886s Get:341 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-trilinosss-dev arm64 13.2.0-6 [32.3 kB] 886s Get:342 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-ml-dev arm64 13.2.0-6 [117 kB] 886s Get:343 http://ftpmaster.internal/ubuntu plucky/universe arm64 libtrilinos-zoltan-dev arm64 13.2.0-6 [32.3 kB] 886s Get:344 http://ftpmaster.internal/ubuntu plucky/main arm64 libc6-dbg arm64 2.40-1ubuntu3 [6417 kB] 887s Get:345 http://ftpmaster.internal/ubuntu plucky/main arm64 valgrind arm64 1:3.23.0-0ubuntu2 [9035 kB] 887s Get:346 http://ftpmaster.internal/ubuntu plucky/universe arm64 valgrind-mpi arm64 1:3.23.0-0ubuntu2 [44.6 kB] 887s Get:347 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpetsc-real3.20-dev arm64 3.20.6+dfsg1-3ubuntu3 [6698 kB] 887s Get:348 http://ftpmaster.internal/ubuntu plucky/universe arm64 libparpack2-dev arm64 3.9.1-1.1ubuntu1 [98.6 kB] 887s Get:349 http://ftpmaster.internal/ubuntu plucky/universe arm64 libslepc-real3.20-dev arm64 3.20.2+dfsg1-2build1 [5689 kB] 887s Get:350 http://ftpmaster.internal/ubuntu plucky/universe arm64 libdolfin-dev arm64 2019.2.0~legacy20240219.1c52e83-10ubuntu1 [14.8 kB] 887s Get:351 http://ftpmaster.internal/ubuntu plucky/universe arm64 libopenblas64-0 arm64 0.3.28+ds-3 [5042 B] 887s Get:352 http://ftpmaster.internal/ubuntu plucky/universe arm64 libopenblas64-pthread-dev arm64 0.3.28+ds-3 [4090 kB] 888s Get:353 http://ftpmaster.internal/ubuntu plucky/universe arm64 libopenblas64-dev arm64 0.3.28+ds-3 [5106 B] 888s Get:354 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhypre64m-dev arm64 2.31.0-1exp2 [1916 kB] 888s Get:355 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmumps64-dev arm64 5.6.2-2.1build3 [1973 kB] 888s Get:356 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpetsc64-real3.20-dev arm64 3.20.6+dfsg1-3ubuntu3 [6712 kB] 888s Get:357 http://ftpmaster.internal/ubuntu plucky/universe arm64 libslepc64-real3.20-dev arm64 3.20.2+dfsg1-2build1 [5713 kB] 888s Get:358 http://ftpmaster.internal/ubuntu plucky/universe arm64 libdolfin64-dev arm64 2019.2.0~legacy20240219.1c52e83-10ubuntu1 [6808 B] 888s Get:359 http://ftpmaster.internal/ubuntu plucky/main arm64 libexpat1-dev arm64 2.6.2-2 [128 kB] 888s Get:360 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 888s Get:361 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 888s Get:362 http://ftpmaster.internal/ubuntu plucky/main arm64 libjson-perl all 4.10000-1 [81.9 kB] 888s Get:363 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpetsc-real-dev all 3.20.6+dfsg1-3ubuntu3 [3936 B] 888s Get:364 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpetsc64-real-dev all 3.20.6+dfsg1-3ubuntu3 [3954 B] 888s Get:365 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.12-dev arm64 3.12.7-3 [5565 kB] 888s Get:366 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-dev arm64 3.12.7-1 [10.3 kB] 888s Get:367 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [2073 kB] 888s Get:368 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13 arm64 3.13.0-2 [2262 kB] 889s Get:369 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-dev arm64 3.13.0-2 [5386 kB] 889s Get:370 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-all-dev arm64 3.12.7-1 [916 B] 889s Get:371 http://ftpmaster.internal/ubuntu plucky/universe arm64 petsc64-dev all 3.20.6+dfsg1-3ubuntu3 [3970 B] 889s Get:372 http://ftpmaster.internal/ubuntu plucky/universe arm64 pybind11-dev all 2.13.6-1 [168 kB] 889s Get:373 http://ftpmaster.internal/ubuntu plucky/main arm64 sphinx-common all 7.4.7-4 [775 kB] 889s Get:374 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-petsc4py-doc all 3.20.5-4ubuntu1 [2005 kB] 889s Get:375 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.0-2 [719 kB] 889s Get:376 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all arm64 3.12.7-1 [890 B] 889s Get:377 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-dev arm64 3.12.7-3 [505 kB] 889s Get:378 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-dev arm64 3.12.7-1 [26.7 kB] 889s Get:379 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-dev arm64 3.13.0-2 [507 kB] 889s Get:380 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all-dev arm64 3.12.7-1 [914 B] 889s Get:381 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-defusedxml all 0.7.1-2 [42.0 kB] 889s Get:382 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-distlib all 0.3.9-1 [267 kB] 889s Get:383 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-roman all 4.2-1 [10.0 kB] 889s Get:384 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-docutils all 0.21.2+dfsg-2 [409 kB] 889s Get:385 http://ftpmaster.internal/ubuntu plucky/universe arm64 swig arm64 4.2.1-1 [1146 kB] 889s Get:386 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-petsc4py-real3.20 arm64 3.20.5-4ubuntu1 [1233 kB] 889s Get:387 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-petsc4py-real all 3.20.5-4ubuntu1 [2656 B] 889s Get:388 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-slepc4py-real3.20 arm64 3.20.2-1ubuntu2 [325 kB] 889s Get:389 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-slepc4py-real all 3.20.2-1ubuntu2 [2578 B] 889s Get:390 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-dolfin-real arm64 2019.2.0~legacy20240219.1c52e83-10ubuntu1 [788 kB] 889s Get:391 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-petsc4py-64-real3.20 arm64 3.20.5-4ubuntu1 [1231 kB] 889s Get:392 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-petsc4py-64-real all 3.20.5-4ubuntu1 [2506 B] 889s Get:393 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-slepc4py-64-real3.20 arm64 3.20.2-1ubuntu2 [325 kB] 889s Get:394 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-slepc4py-64-real all 3.20.2-1ubuntu2 [2556 B] 889s Get:395 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pkgconfig all 1.5.5-2 [7888 B] 889s Get:396 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pybind11 all 2.13.6-1 [176 kB] 889s Get:397 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-dolfin64-real arm64 2019.2.0~legacy20240219.1c52e83-10ubuntu1 [805 kB] 889s Get:398 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-filelock all 3.16.1-1 [12.8 kB] 889s Get:399 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-imagesize all 1.4.1-1 [6844 B] 889s Get:400 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 889s Get:401 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.1-1 [41.4 kB] 889s Get:402 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-wheel all 0.44.0-1 [54.2 kB] 889s Get:403 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pip all 24.2+dfsg-1 [1398 kB] 889s Get:404 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pip-whl all 24.2+dfsg-1 [1420 kB] 889s Get:405 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-platformdirs all 4.3.6-1 [16.8 kB] 890s Get:406 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 890s Get:407 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-ply all 3.11-7 [45.4 kB] 890s Get:408 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pusimp all 0.1.1-1 [10.3 kB] 890s Get:409 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB] 890s Get:410 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-setuptools-whl all 74.1.2-1 [1171 kB] 890s Get:411 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-six all 1.16.0-7 [13.1 kB] 890s Get:412 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 890s Get:413 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-alabaster all 0.7.16-0.1 [18.5 kB] 890s Get:414 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-sphinx all 7.4.7-4 [593 kB] 890s Get:415 http://ftpmaster.internal/ubuntu plucky/main arm64 sphinx-rtd-theme-common all 3.0.1+dfsg-1 [1012 kB] 890s Get:416 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sphinxcontrib.jquery all 4.1-5 [6678 B] 890s Get:417 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sphinx-rtd-theme all 3.0.1+dfsg-1 [23.5 kB] 890s Get:418 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-wheel-whl all 0.44.0-1 [69.5 kB] 890s Get:419 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-virtualenv all 20.27.0+ds-1 [71.9 kB] 890s Get:420 http://ftpmaster.internal/ubuntu plucky/universe arm64 slepc64-dev arm64 3.20.2+dfsg1-2build1 [2242 B] 890s Get:421 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-petsc4py all 3.20.5-4ubuntu1 [2314 B] 890s Get:422 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-slepc4py all 3.20.2-1ubuntu2 [2252 B] 890s Get:423 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-dolfin arm64 2019.2.0~legacy20240219.1c52e83-10ubuntu1 [26.9 kB] 890s Get:424 http://ftpmaster.internal/ubuntu plucky/universe arm64 dolfin-doc all 2019.2.0~legacy20240219.1c52e83-10ubuntu1 [13.0 MB] 891s Get:425 http://ftpmaster.internal/ubuntu plucky/universe arm64 dolfin-bin all 2019.2.0~legacy20240219.1c52e83-10ubuntu1 [21.5 kB] 891s Get:426 http://ftpmaster.internal/ubuntu plucky/universe arm64 petsc-dev all 3.20.6+dfsg1-3ubuntu3 [7492 B] 891s Get:427 http://ftpmaster.internal/ubuntu plucky/universe arm64 slepc-dev arm64 3.20.2+dfsg1-2build1 [4836 B] 891s Get:428 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-modernizr all 3.13.0-0.1 [101 kB] 892s Fetched 441 MB in 21s (20.5 MB/s) 892s Selecting previously unselected package fonts-lato. 892s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79931 files and directories currently installed.) 892s Preparing to unpack .../000-fonts-lato_2.015-1_all.deb ... 892s Unpacking fonts-lato (2.015-1) ... 892s Selecting previously unselected package libpython3.13-minimal:arm64. 892s Preparing to unpack .../001-libpython3.13-minimal_3.13.0-2_arm64.deb ... 892s Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ... 892s Selecting previously unselected package python3.13-minimal. 892s Preparing to unpack .../002-python3.13-minimal_3.13.0-2_arm64.deb ... 892s Unpacking python3.13-minimal (3.13.0-2) ... 892s Selecting previously unselected package sgml-base. 892s Preparing to unpack .../003-sgml-base_1.31_all.deb ... 892s Unpacking sgml-base (1.31) ... 892s Selecting previously unselected package m4. 892s Preparing to unpack .../004-m4_1.4.19-4build1_arm64.deb ... 892s Unpacking m4 (1.4.19-4build1) ... 893s Selecting previously unselected package autoconf. 893s Preparing to unpack .../005-autoconf_2.72-3_all.deb ... 893s Unpacking autoconf (2.72-3) ... 893s Selecting previously unselected package autotools-dev. 893s Preparing to unpack .../006-autotools-dev_20220109.1_all.deb ... 893s Unpacking autotools-dev (20220109.1) ... 893s Selecting previously unselected package automake. 893s Preparing to unpack .../007-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 893s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 893s Selecting previously unselected package autopoint. 893s Preparing to unpack .../008-autopoint_0.22.5-2_all.deb ... 893s Unpacking autopoint (0.22.5-2) ... 893s Selecting previously unselected package libisl23:arm64. 893s Preparing to unpack .../009-libisl23_0.27-1_arm64.deb ... 893s Unpacking libisl23:arm64 (0.27-1) ... 893s Selecting previously unselected package libmpc3:arm64. 893s Preparing to unpack .../010-libmpc3_1.3.1-1build2_arm64.deb ... 893s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 893s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 893s Preparing to unpack .../011-cpp-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ... 893s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 893s Selecting previously unselected package cpp-14. 893s Preparing to unpack .../012-cpp-14_14.2.0-8ubuntu1_arm64.deb ... 893s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 893s Selecting previously unselected package cpp-aarch64-linux-gnu. 893s Preparing to unpack .../013-cpp-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 893s Unpacking cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 893s Selecting previously unselected package cpp. 893s Preparing to unpack .../014-cpp_4%3a14.1.0-2ubuntu1_arm64.deb ... 893s Unpacking cpp (4:14.1.0-2ubuntu1) ... 893s Selecting previously unselected package libcc1-0:arm64. 893s Preparing to unpack .../015-libcc1-0_14.2.0-8ubuntu1_arm64.deb ... 893s Unpacking libcc1-0:arm64 (14.2.0-8ubuntu1) ... 893s Selecting previously unselected package libgomp1:arm64. 893s Preparing to unpack .../016-libgomp1_14.2.0-8ubuntu1_arm64.deb ... 893s Unpacking libgomp1:arm64 (14.2.0-8ubuntu1) ... 893s Selecting previously unselected package libitm1:arm64. 893s Preparing to unpack .../017-libitm1_14.2.0-8ubuntu1_arm64.deb ... 893s Unpacking libitm1:arm64 (14.2.0-8ubuntu1) ... 893s Selecting previously unselected package libasan8:arm64. 893s Preparing to unpack .../018-libasan8_14.2.0-8ubuntu1_arm64.deb ... 893s Unpacking libasan8:arm64 (14.2.0-8ubuntu1) ... 894s Selecting previously unselected package liblsan0:arm64. 894s Preparing to unpack .../019-liblsan0_14.2.0-8ubuntu1_arm64.deb ... 894s Unpacking liblsan0:arm64 (14.2.0-8ubuntu1) ... 894s Selecting previously unselected package libtsan2:arm64. 894s Preparing to unpack .../020-libtsan2_14.2.0-8ubuntu1_arm64.deb ... 894s Unpacking libtsan2:arm64 (14.2.0-8ubuntu1) ... 894s Selecting previously unselected package libubsan1:arm64. 894s Preparing to unpack .../021-libubsan1_14.2.0-8ubuntu1_arm64.deb ... 894s Unpacking libubsan1:arm64 (14.2.0-8ubuntu1) ... 894s Selecting previously unselected package libhwasan0:arm64. 894s Preparing to unpack .../022-libhwasan0_14.2.0-8ubuntu1_arm64.deb ... 894s Unpacking libhwasan0:arm64 (14.2.0-8ubuntu1) ... 894s Selecting previously unselected package libgcc-14-dev:arm64. 894s Preparing to unpack .../023-libgcc-14-dev_14.2.0-8ubuntu1_arm64.deb ... 894s Unpacking libgcc-14-dev:arm64 (14.2.0-8ubuntu1) ... 894s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 894s Preparing to unpack .../024-gcc-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ... 894s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 894s Selecting previously unselected package gcc-14. 894s Preparing to unpack .../025-gcc-14_14.2.0-8ubuntu1_arm64.deb ... 894s Unpacking gcc-14 (14.2.0-8ubuntu1) ... 894s Selecting previously unselected package gcc-aarch64-linux-gnu. 895s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 895s Unpacking gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 895s Selecting previously unselected package gcc. 895s Preparing to unpack .../027-gcc_4%3a14.1.0-2ubuntu1_arm64.deb ... 895s Unpacking gcc (4:14.1.0-2ubuntu1) ... 895s Selecting previously unselected package libstdc++-14-dev:arm64. 895s Preparing to unpack .../028-libstdc++-14-dev_14.2.0-8ubuntu1_arm64.deb ... 895s Unpacking libstdc++-14-dev:arm64 (14.2.0-8ubuntu1) ... 895s Selecting previously unselected package g++-14-aarch64-linux-gnu. 895s Preparing to unpack .../029-g++-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ... 895s Unpacking g++-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 895s Selecting previously unselected package g++-14. 895s Preparing to unpack .../030-g++-14_14.2.0-8ubuntu1_arm64.deb ... 895s Unpacking g++-14 (14.2.0-8ubuntu1) ... 895s Selecting previously unselected package g++-aarch64-linux-gnu. 895s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 895s Unpacking g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 895s Selecting previously unselected package g++. 895s Preparing to unpack .../032-g++_4%3a14.1.0-2ubuntu1_arm64.deb ... 895s Unpacking g++ (4:14.1.0-2ubuntu1) ... 895s Selecting previously unselected package build-essential. 895s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 895s Unpacking build-essential (12.10ubuntu1) ... 895s Selecting previously unselected package chrpath. 895s Preparing to unpack .../034-chrpath_0.18-1_arm64.deb ... 895s Unpacking chrpath 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dh-strip-nondeterminism (1.14.0-1) ... 897s Selecting previously unselected package debugedit. 897s Preparing to unpack .../051-debugedit_1%3a5.1-1_arm64.deb ... 897s Unpacking debugedit (1:5.1-1) ... 897s Selecting previously unselected package dwz. 897s Preparing to unpack .../052-dwz_0.15-1build6_arm64.deb ... 897s Unpacking dwz (0.15-1build6) ... 897s Selecting previously unselected package gettext. 898s Preparing to unpack .../053-gettext_0.22.5-2_arm64.deb ... 898s Unpacking gettext (0.22.5-2) ... 898s Selecting previously unselected package intltool-debian. 898s Preparing to unpack .../054-intltool-debian_0.35.0+20060710.6_all.deb ... 898s Unpacking intltool-debian (0.35.0+20060710.6) ... 898s Selecting previously unselected package po-debconf. 898s Preparing to unpack .../055-po-debconf_1.0.21+nmu1_all.deb ... 898s Unpacking po-debconf (1.0.21+nmu1) ... 898s Selecting previously unselected package debhelper. 898s Preparing to unpack .../056-debhelper_13.20ubuntu1_all.deb ... 898s Unpacking debhelper (13.20ubuntu1) ... 898s Selecting previously unselected package dh-python. 898s Preparing to unpack .../057-dh-python_6.20241024_all.deb ... 898s Unpacking dh-python (6.20241024) ... 898s Selecting previously unselected package xml-core. 898s Preparing to unpack .../058-xml-core_0.19_all.deb ... 898s Unpacking xml-core (0.19) ... 898s Selecting previously unselected package docutils-common. 898s Preparing to unpack .../059-docutils-common_0.21.2+dfsg-2_all.deb ... 898s Unpacking docutils-common (0.21.2+dfsg-2) ... 898s Selecting previously unselected package libfmt10:arm64. 898s Preparing to unpack .../060-libfmt10_10.1.1+ds1-4_arm64.deb ... 898s Unpacking libfmt10:arm64 (10.1.1+ds1-4) ... 898s Selecting previously unselected package libxapian30:arm64. 898s Preparing to unpack .../061-libxapian30_1.4.25-1_arm64.deb ... 898s Unpacking libxapian30:arm64 (1.4.25-1) ... 898s Selecting previously unselected package doxygen. 898s Preparing to unpack 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899s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 899s Selecting previously unselected package fonts-font-awesome. 899s Preparing to unpack .../068-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 899s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 899s Selecting previously unselected package fonts-mathjax. 899s Preparing to unpack .../069-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 899s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 899s Selecting previously unselected package libgfortran5:arm64. 899s Preparing to unpack .../070-libgfortran5_14.2.0-8ubuntu1_arm64.deb ... 899s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ... 899s Selecting previously unselected package libgfortran-14-dev:arm64. 899s Preparing to unpack .../071-libgfortran-14-dev_14.2.0-8ubuntu1_arm64.deb ... 899s Unpacking libgfortran-14-dev:arm64 (14.2.0-8ubuntu1) ... 899s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 899s Preparing to unpack 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gfortran-13-aarch64-linux-gnu. 900s Preparing to unpack .../077-gfortran-13-aarch64-linux-gnu_13.3.0-6ubuntu2_arm64.deb ... 900s Unpacking gfortran-13-aarch64-linux-gnu (13.3.0-6ubuntu2) ... 900s Selecting previously unselected package gfortran-13. 900s Preparing to unpack .../078-gfortran-13_13.3.0-6ubuntu2_arm64.deb ... 900s Unpacking gfortran-13 (13.3.0-6ubuntu2) ... 900s Selecting previously unselected package libann0. 900s Preparing to unpack .../079-libann0_1.1.2+doc-9build1_arm64.deb ... 900s Unpacking libann0 (1.1.2+doc-9build1) ... 900s Selecting previously unselected package libcdt5:arm64. 900s Preparing to unpack .../080-libcdt5_2.42.4-2build3_arm64.deb ... 900s Unpacking libcdt5:arm64 (2.42.4-2build3) ... 900s Selecting previously unselected package libcgraph6:arm64. 900s Preparing to unpack .../081-libcgraph6_2.42.4-2build3_arm64.deb ... 900s Unpacking libcgraph6:arm64 (2.42.4-2build3) ... 900s Selecting previously unselected package libsharpyuv0:arm64. 900s Preparing to unpack .../082-libsharpyuv0_1.4.0-0.1_arm64.deb ... 900s Unpacking libsharpyuv0:arm64 (1.4.0-0.1) ... 900s Selecting previously unselected package libaom3:arm64. 900s Preparing to unpack .../083-libaom3_3.11.0~rc1-1_arm64.deb ... 900s Unpacking libaom3:arm64 (3.11.0~rc1-1) ... 900s Selecting previously unselected package libheif-plugin-aomdec:arm64. 900s Preparing to unpack .../084-libheif-plugin-aomdec_1.18.1-2_arm64.deb ... 900s Unpacking libheif-plugin-aomdec:arm64 (1.18.1-2) ... 900s Selecting previously unselected package libde265-0:arm64. 900s Preparing to unpack .../085-libde265-0_1.0.15-1build4_arm64.deb ... 900s Unpacking libde265-0:arm64 (1.0.15-1build4) ... 900s Selecting previously unselected package libheif-plugin-libde265:arm64. 900s Preparing to unpack .../086-libheif-plugin-libde265_1.18.1-2_arm64.deb ... 900s Unpacking libheif-plugin-libde265:arm64 (1.18.1-2) ... 900s Selecting previously unselected package libheif1:arm64. 900s Preparing to unpack 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package libtiff6:arm64. 901s Preparing to unpack .../098-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 901s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 901s Selecting previously unselected package libxpm4:arm64. 901s Preparing to unpack .../099-libxpm4_1%3a3.5.17-1build2_arm64.deb ... 901s Unpacking libxpm4:arm64 (1:3.5.17-1build2) ... 901s Selecting previously unselected package libgd3:arm64. 901s Preparing to unpack .../100-libgd3_2.3.3-12ubuntu3_arm64.deb ... 901s Unpacking libgd3:arm64 (2.3.3-12ubuntu3) ... 901s Selecting previously unselected package libgts-0.7-5t64:arm64. 901s Preparing to unpack .../101-libgts-0.7-5t64_0.7.6+darcs121130-5.2build1_arm64.deb ... 901s Unpacking libgts-0.7-5t64:arm64 (0.7.6+darcs121130-5.2build1) ... 901s Selecting previously unselected package libpixman-1-0:arm64. 901s Preparing to unpack .../102-libpixman-1-0_0.44.0-3_arm64.deb ... 901s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 901s Selecting previously unselected package 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Unpacking x11-common (1:7.7+23ubuntu3) ... 902s Selecting previously unselected package libice6:arm64. 902s Preparing to unpack .../119-libice6_2%3a1.1.1-1_arm64.deb ... 902s Unpacking libice6:arm64 (2:1.1.1-1) ... 902s Selecting previously unselected package libsm6:arm64. 902s Preparing to unpack .../120-libsm6_2%3a1.2.4-1_arm64.deb ... 902s Unpacking libsm6:arm64 (2:1.2.4-1) ... 902s Selecting previously unselected package libxt6t64:arm64. 902s Preparing to unpack .../121-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 902s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 902s Selecting previously unselected package libxmu6:arm64. 902s Preparing to unpack .../122-libxmu6_2%3a1.1.3-3build2_arm64.deb ... 902s Unpacking libxmu6:arm64 (2:1.1.3-3build2) ... 902s Selecting previously unselected package libxaw7:arm64. 902s Preparing to unpack .../123-libxaw7_2%3a1.0.16-1_arm64.deb ... 902s Unpacking libxaw7:arm64 (2:1.0.16-1) ... 902s Selecting previously unselected package graphviz. 902s Preparing to unpack .../124-graphviz_2.42.4-2build3_arm64.deb ... 902s Unpacking graphviz (2.42.4-2build3) ... 902s Selecting previously unselected package icu-devtools. 902s Preparing to unpack .../125-icu-devtools_74.2-1ubuntu4_arm64.deb ... 902s Unpacking icu-devtools (74.2-1ubuntu4) ... 902s Selecting previously unselected package libaec0:arm64. 902s Preparing to unpack .../126-libaec0_1.1.3-1_arm64.deb ... 902s Unpacking libaec0:arm64 (1.1.3-1) ... 902s Selecting previously unselected package libllvm17t64:arm64. 902s Preparing to unpack .../127-libllvm17t64_1%3a17.0.6-18_arm64.deb ... 902s Unpacking libllvm17t64:arm64 (1:17.0.6-18) ... 903s Selecting previously unselected package libamd-comgr2:arm64. 903s Preparing to unpack .../128-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_arm64.deb ... 903s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 904s Selecting previously unselected package libsuitesparseconfig7:arm64. 904s Preparing to unpack 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libgnutls-dane0t64:arm64 (3.8.6-2ubuntu1) ... 914s Selecting previously unselected package libgnutls-openssl27t64:arm64. 914s Preparing to unpack .../229-libgnutls-openssl27t64_3.8.6-2ubuntu1_arm64.deb ... 914s Unpacking libgnutls-openssl27t64:arm64 (3.8.6-2ubuntu1) ... 914s Selecting previously unselected package libp11-kit-dev:arm64. 914s Preparing to unpack .../230-libp11-kit-dev_0.25.5-2ubuntu1_arm64.deb ... 914s Unpacking libp11-kit-dev:arm64 (0.25.5-2ubuntu1) ... 914s Selecting previously unselected package libtasn1-6-dev:arm64. 914s Preparing to unpack .../231-libtasn1-6-dev_4.19.0-3build1_arm64.deb ... 914s Unpacking libtasn1-6-dev:arm64 (4.19.0-3build1) ... 914s Selecting previously unselected package nettle-dev:arm64. 914s Preparing to unpack .../232-nettle-dev_3.10-1_arm64.deb ... 914s Unpacking nettle-dev:arm64 (3.10-1) ... 914s Selecting previously unselected package libgnutls28-dev:arm64. 914s Preparing to unpack .../233-libgnutls28-dev_3.8.6-2ubuntu1_arm64.deb ... 914s 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libfftw3-double3:arm64. 915s Preparing to unpack .../243-libfftw3-double3_3.3.10-1ubuntu4_arm64.deb ... 915s Unpacking libfftw3-double3:arm64 (3.3.10-1ubuntu4) ... 915s Selecting previously unselected package libfftw3-long3:arm64. 915s Preparing to unpack .../244-libfftw3-long3_3.3.10-1ubuntu4_arm64.deb ... 915s Unpacking libfftw3-long3:arm64 (3.3.10-1ubuntu4) ... 915s Selecting previously unselected package libfftw3-single3:arm64. 915s Preparing to unpack .../245-libfftw3-single3_3.3.10-1ubuntu4_arm64.deb ... 915s Unpacking libfftw3-single3:arm64 (3.3.10-1ubuntu4) ... 915s Selecting previously unselected package libfftw3-mpi3:arm64. 915s Preparing to unpack .../246-libfftw3-mpi3_3.3.10-1ubuntu4_arm64.deb ... 915s Unpacking libfftw3-mpi3:arm64 (3.3.10-1ubuntu4) ... 915s Selecting previously unselected package libmetis5:arm64. 915s Preparing to unpack .../247-libmetis5_5.1.0.dfsg-7build3_arm64.deb ... 915s Unpacking libmetis5:arm64 (5.1.0.dfsg-7build3) ... 915s Selecting previously unselected package libptscotch-7.0:arm64. 915s Preparing to unpack .../248-libptscotch-7.0_7.0.5-1ubuntu1_arm64.deb ... 915s Unpacking libptscotch-7.0:arm64 (7.0.5-1ubuntu1) ... 915s Selecting previously unselected package libsuperlu-dist8:arm64. 915s Preparing to unpack .../249-libsuperlu-dist8_8.2.1+dfsg1-2_arm64.deb ... 915s Unpacking libsuperlu-dist8:arm64 (8.2.1+dfsg1-2) ... 915s Selecting previously unselected package libhypre-2.31.0:arm64. 915s Preparing to unpack .../250-libhypre-2.31.0_2.31.0-1exp2_arm64.deb ... 915s Unpacking libhypre-2.31.0:arm64 (2.31.0-1exp2) ... 915s Selecting previously unselected package libklu2:arm64. 915s Preparing to unpack .../251-libklu2_1%3a7.8.3+dfsg-2_arm64.deb ... 915s Unpacking libklu2:arm64 (1:7.8.3+dfsg-2) ... 916s Selecting previously unselected package mpi-default-bin. 916s Preparing to unpack .../252-mpi-default-bin_1.17_arm64.deb ... 916s Unpacking mpi-default-bin (1.17) ... 916s Selecting previously unselected package libscalapack-openmpi2.2:arm64. 916s Preparing to unpack .../253-libscalapack-openmpi2.2_2.2.1-3.1ubuntu2_arm64.deb ... 916s Unpacking libscalapack-openmpi2.2:arm64 (2.2.1-3.1ubuntu2) ... 916s Selecting previously unselected package libmumps-5.6t64:arm64. 916s Preparing to unpack .../254-libmumps-5.6t64_5.6.2-2.1build3_arm64.deb ... 916s Unpacking libmumps-5.6t64:arm64 (5.6.2-2.1build3) ... 916s Selecting previously unselected package libspqr4:arm64. 916s Preparing to unpack .../255-libspqr4_1%3a7.8.3+dfsg-2_arm64.deb ... 916s Unpacking libspqr4:arm64 (1:7.8.3+dfsg-2) ... 916s Selecting previously unselected package libsuperlu6:arm64. 916s Preparing to unpack .../256-libsuperlu6_6.0.1+dfsg1-1build3_arm64.deb ... 916s Unpacking libsuperlu6:arm64 (6.0.1+dfsg1-1build3) ... 916s Selecting previously unselected package libscotch-7.0:arm64. 916s Preparing to unpack .../257-libscotch-7.0_7.0.5-1ubuntu1_arm64.deb ... 916s Unpacking libscotch-7.0:arm64 (7.0.5-1ubuntu1) ... 916s Selecting previously unselected package libtrilinos-kokkos-13.2:arm64. 916s Preparing to unpack .../258-libtrilinos-kokkos-13.2_13.2.0-6_arm64.deb ... 916s Unpacking libtrilinos-kokkos-13.2:arm64 (13.2.0-6) ... 916s Selecting previously unselected package libtrilinos-teuchos-13.2:arm64. 916s Preparing to unpack .../259-libtrilinos-teuchos-13.2_13.2.0-6_arm64.deb ... 916s Unpacking libtrilinos-teuchos-13.2:arm64 (13.2.0-6) ... 916s Selecting previously unselected package libtrilinos-epetra-13.2:arm64. 916s Preparing to unpack .../260-libtrilinos-epetra-13.2_13.2.0-6_arm64.deb ... 916s Unpacking libtrilinos-epetra-13.2:arm64 (13.2.0-6) ... 916s Selecting previously unselected package libtrilinos-triutils-13.2:arm64. 916s Preparing to unpack .../261-libtrilinos-triutils-13.2_13.2.0-6_arm64.deb ... 916s Unpacking libtrilinos-triutils-13.2:arm64 (13.2.0-6) ... 916s Selecting previously unselected package libtrilinos-epetraext-13.2:arm64. 916s Preparing to unpack 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917s Selecting previously unselected package libtrilinos-ifpack-13.2:arm64. 917s Preparing to unpack .../267-libtrilinos-ifpack-13.2_13.2.0-6_arm64.deb ... 917s Unpacking libtrilinos-ifpack-13.2:arm64 (13.2.0-6) ... 917s Selecting previously unselected package libtrilinos-zoltan-13.2:arm64. 917s Preparing to unpack .../268-libtrilinos-zoltan-13.2_13.2.0-6_arm64.deb ... 917s Unpacking libtrilinos-zoltan-13.2:arm64 (13.2.0-6) ... 917s Selecting previously unselected package libtrilinos-ml-13.2:arm64. 917s Preparing to unpack .../269-libtrilinos-ml-13.2_13.2.0-6_arm64.deb ... 917s Unpacking libtrilinos-ml-13.2:arm64 (13.2.0-6) ... 917s Selecting previously unselected package libumfpack6:arm64. 917s Preparing to unpack .../270-libumfpack6_1%3a7.8.3+dfsg-2_arm64.deb ... 917s Unpacking libumfpack6:arm64 (1:7.8.3+dfsg-2) ... 917s Selecting previously unselected package libpetsc-real3.20:arm64. 917s Preparing to unpack .../271-libpetsc-real3.20_3.20.6+dfsg1-3ubuntu3_arm64.deb ... 917s Unpacking libpetsc-real3.20:arm64 (3.20.6+dfsg1-3ubuntu3) ... 917s Selecting previously unselected package libparpack2t64:arm64. 917s Preparing to unpack .../272-libparpack2t64_3.9.1-1.1ubuntu1_arm64.deb ... 917s Unpacking libparpack2t64:arm64 (3.9.1-1.1ubuntu1) ... 917s Selecting previously unselected package libslepc-real3.20. 917s Preparing to unpack .../273-libslepc-real3.20_3.20.2+dfsg1-2build1_arm64.deb ... 917s Unpacking libslepc-real3.20 (3.20.2+dfsg1-2build1) ... 917s Selecting previously unselected package libdolfin2019.2t64:arm64. 917s Preparing to unpack .../274-libdolfin2019.2t64_2019.2.0~legacy20240219.1c52e83-10ubuntu1_arm64.deb ... 917s Unpacking libdolfin2019.2t64:arm64 (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 917s Selecting previously unselected package libopenblas64-0-pthread:arm64. 917s Preparing to unpack .../275-libopenblas64-0-pthread_0.3.28+ds-3_arm64.deb ... 917s Unpacking libopenblas64-0-pthread:arm64 (0.3.28+ds-3) ... 917s Selecting previously unselected package liblapack64-3:arm64. 917s Preparing to unpack .../276-liblapack64-3_3.12.0-3build2_arm64.deb ... 917s Unpacking liblapack64-3:arm64 (3.12.0-3build2) ... 918s Selecting previously unselected package libhypre64m-2.31.0:arm64. 918s Preparing to unpack .../277-libhypre64m-2.31.0_2.31.0-1exp2_arm64.deb ... 918s Unpacking libhypre64m-2.31.0:arm64 (2.31.0-1exp2) ... 918s Selecting previously unselected package libmumps-64pord-5.6t64:arm64. 918s Preparing to unpack .../278-libmumps-64pord-5.6t64_5.6.2-2.1build3_arm64.deb ... 918s Unpacking libmumps-64pord-5.6t64:arm64 (5.6.2-2.1build3) ... 918s Selecting previously unselected package libpetsc64-real3.20:arm64. 918s Preparing to unpack .../279-libpetsc64-real3.20_3.20.6+dfsg1-3ubuntu3_arm64.deb ... 918s Unpacking libpetsc64-real3.20:arm64 (3.20.6+dfsg1-3ubuntu3) ... 918s Selecting previously unselected package libslepc64-real3.20. 918s Preparing to unpack .../280-libslepc64-real3.20_3.20.2+dfsg1-2build1_arm64.deb ... 918s 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package libhdf5-openmpi-hl-100t64:arm64. 919s Preparing to unpack .../285-libhdf5-openmpi-hl-100t64_1.10.10+repack-4ubuntu3_arm64.deb ... 919s Unpacking libhdf5-openmpi-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 919s Selecting previously unselected package libhdf5-openmpi-hl-fortran-100t64:arm64. 919s Preparing to unpack .../286-libhdf5-openmpi-hl-fortran-100t64_1.10.10+repack-4ubuntu3_arm64.deb ... 919s Unpacking libhdf5-openmpi-hl-fortran-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 919s Selecting previously unselected package libhdf5-openmpi-cpp-103-1t64:arm64. 919s Preparing to unpack .../287-libhdf5-openmpi-cpp-103-1t64_1.10.10+repack-4ubuntu3_arm64.deb ... 919s Unpacking libhdf5-openmpi-cpp-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 919s Selecting previously unselected package libhdf5-openmpi-hl-cpp-100t64:arm64. 919s Preparing to unpack .../288-libhdf5-openmpi-hl-cpp-100t64_1.10.10+repack-4ubuntu3_arm64.deb ... 919s Unpacking libhdf5-openmpi-hl-cpp-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 919s Selecting previously unselected package libaec-dev:arm64. 919s Preparing to unpack .../289-libaec-dev_1.1.3-1_arm64.deb ... 919s Unpacking libaec-dev:arm64 (1.1.3-1) ... 919s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 919s Preparing to unpack .../290-libjpeg-turbo8-dev_2.1.5-2ubuntu2_arm64.deb ... 919s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu2) ... 919s Selecting previously unselected package libjpeg8-dev:arm64. 919s Preparing to unpack .../291-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 919s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 919s Selecting previously unselected package libjpeg-dev:arm64. 919s Preparing to unpack .../292-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 919s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 919s Selecting previously unselected package libhdf5-openmpi-dev. 919s Preparing to unpack .../293-libhdf5-openmpi-dev_1.10.10+repack-4ubuntu3_arm64.deb ... 919s Unpacking libhdf5-openmpi-dev (1.10.10+repack-4ubuntu3) ... 919s Selecting previously unselected package libhdf5-mpi-dev. 919s Preparing to unpack .../294-libhdf5-mpi-dev_1.10.10+repack-4ubuntu3_arm64.deb ... 919s Unpacking libhdf5-mpi-dev (1.10.10+repack-4ubuntu3) ... 919s Selecting previously unselected package libldl3:arm64. 919s Preparing to unpack .../295-libldl3_1%3a7.8.3+dfsg-2_arm64.deb ... 919s Unpacking libldl3:arm64 (1:7.8.3+dfsg-2) ... 919s Selecting previously unselected package libsuitesparse-mongoose3:arm64. 919s Preparing to unpack .../296-libsuitesparse-mongoose3_1%3a7.8.3+dfsg-2_arm64.deb ... 919s Unpacking libsuitesparse-mongoose3:arm64 (1:7.8.3+dfsg-2) ... 919s Selecting previously unselected package librbio4:arm64. 919s Preparing to unpack .../297-librbio4_1%3a7.8.3+dfsg-2_arm64.deb ... 919s Unpacking librbio4:arm64 (1:7.8.3+dfsg-2) ... 920s Selecting previously unselected package libspex3:arm64. 920s Preparing to unpack .../298-libspex3_1%3a7.8.3+dfsg-2_arm64.deb ... 920s Unpacking libspex3:arm64 (1:7.8.3+dfsg-2) ... 920s Selecting previously unselected package libparu1:arm64. 920s Preparing to unpack .../299-libparu1_1%3a7.8.3+dfsg-2_arm64.deb ... 920s Unpacking libparu1:arm64 (1:7.8.3+dfsg-2) ... 920s Selecting previously unselected package libsuitesparse-dev:arm64. 920s Preparing to unpack .../300-libsuitesparse-dev_1%3a7.8.3+dfsg-2_arm64.deb ... 920s Unpacking libsuitesparse-dev:arm64 (1:7.8.3+dfsg-2) ... 920s Selecting previously unselected package libscotch-dev. 920s Preparing to unpack .../301-libscotch-dev_7.0.5-1ubuntu1_arm64.deb ... 920s Unpacking libscotch-dev (7.0.5-1ubuntu1) ... 920s Selecting previously unselected package liblzma-dev:arm64. 920s Preparing to unpack .../302-liblzma-dev_5.6.2-2_arm64.deb ... 920s Unpacking liblzma-dev:arm64 (5.6.2-2) ... 920s Selecting previously unselected package libxml2-dev:arm64. 920s Preparing to unpack .../303-libxml2-dev_2.12.7+dfsg-3_arm64.deb ... 920s Unpacking libxml2-dev:arm64 (2.12.7+dfsg-3) ... 920s Selecting previously unselected package python3-numpy. 920s Preparing to unpack .../304-python3-numpy_1%3a1.26.4+ds-11build1_arm64.deb ... 920s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 920s Selecting previously unselected package python3-mpi4py. 920s Preparing to unpack .../305-python3-mpi4py_3.1.6-9ubuntu1_arm64.deb ... 920s Unpacking python3-mpi4py (3.1.6-9ubuntu1) ... 920s Selecting previously unselected package python3-dijitso. 920s Preparing to unpack .../306-python3-dijitso_2019.2.0~git20190418.c92dcb0-4_all.deb ... 920s Unpacking python3-dijitso (2019.2.0~git20190418.c92dcb0-4) ... 920s Selecting previously unselected package python3-mpmath. 920s Preparing to unpack .../307-python3-mpmath_1.3.0-1_all.deb ... 920s Unpacking python3-mpmath (1.3.0-1) ... 920s Selecting previously unselected package python3-sympy. 920s Preparing to unpack .../308-python3-sympy_1.13.3-1_all.deb ... 920s Unpacking python3-sympy (1.13.3-1) ... 921s Selecting previously unselected package python3-fiat. 921s Preparing to unpack .../309-python3-fiat_2019.2.0~git20210419.7d418fa-5_all.deb ... 921s Unpacking python3-fiat (2019.2.0~git20210419.7d418fa-5) ... 921s Selecting previously unselected package python3-ufl-legacy. 921s Preparing to unpack .../310-python3-ufl-legacy_1%3a2022.3.0-3_all.deb ... 921s Unpacking python3-ufl-legacy (1:2022.3.0-3) ... 921s Selecting previously unselected package python3-ffc. 921s Preparing to unpack .../311-python3-ffc_2019.2.0~legacy20230509.35df986-3_all.deb ... 921s Unpacking python3-ffc (2019.2.0~legacy20230509.35df986-3) ... 921s Selecting previously unselected package libjs-mathjax. 921s Preparing to unpack .../312-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 921s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 921s Selecting previously unselected package libptscotch-dev. 921s Preparing to unpack .../313-libptscotch-dev_7.0.5-1ubuntu1_arm64.deb ... 921s Unpacking libptscotch-dev (7.0.5-1ubuntu1) ... 922s Selecting previously unselected package libscalapack-openmpi-dev:arm64. 922s Preparing to unpack .../314-libscalapack-openmpi-dev_2.2.1-3.1ubuntu2_arm64.deb ... 922s Unpacking libscalapack-openmpi-dev:arm64 (2.2.1-3.1ubuntu2) ... 922s Selecting previously unselected package libscalapack-mpi-dev:arm64. 922s Preparing to unpack .../315-libscalapack-mpi-dev_2.2.1-3.1ubuntu2_arm64.deb ... 922s Unpacking libscalapack-mpi-dev:arm64 (2.2.1-3.1ubuntu2) ... 922s Selecting previously unselected package libfftw3-bin. 922s Preparing to unpack .../316-libfftw3-bin_3.3.10-1ubuntu4_arm64.deb ... 922s Unpacking libfftw3-bin (3.3.10-1ubuntu4) ... 922s Selecting previously unselected package libfftw3-dev:arm64. 922s Preparing to unpack .../317-libfftw3-dev_3.3.10-1ubuntu4_arm64.deb ... 922s Unpacking libfftw3-dev:arm64 (3.3.10-1ubuntu4) ... 922s Selecting previously unselected package libfftw3-mpi-dev:arm64. 922s Preparing to unpack .../318-libfftw3-mpi-dev_3.3.10-1ubuntu4_arm64.deb ... 922s Unpacking libfftw3-mpi-dev:arm64 (3.3.10-1ubuntu4) ... 922s Selecting previously unselected package opencl-c-headers. 922s Preparing to unpack .../319-opencl-c-headers_3.0~2024.05.08-1_all.deb ... 922s Unpacking opencl-c-headers (3.0~2024.05.08-1) ... 922s Selecting previously unselected package opencl-clhpp-headers. 922s Preparing to unpack .../320-opencl-clhpp-headers_3.0~2024.05.08-1ubuntu1_all.deb ... 922s Unpacking opencl-clhpp-headers (3.0~2024.05.08-1ubuntu1) ... 922s Selecting previously unselected package ocl-icd-opencl-dev:arm64. 922s Preparing to unpack .../321-ocl-icd-opencl-dev_2.3.2-1build1_arm64.deb ... 922s Unpacking ocl-icd-opencl-dev:arm64 (2.3.2-1build1) ... 922s Selecting previously unselected package libsuperlu7:arm64. 922s Preparing to unpack .../322-libsuperlu7_7.0.0+dfsg1-2_arm64.deb ... 922s Unpacking libsuperlu7:arm64 (7.0.0+dfsg1-2) ... 922s Selecting previously unselected package libsuperlu-dev:arm64. 922s Preparing to unpack .../323-libsuperlu-dev_7.0.0+dfsg1-2_arm64.deb ... 922s Unpacking libsuperlu-dev:arm64 (7.0.0+dfsg1-2) ... 922s Selecting previously unselected package libsuperlu-dist-dev:arm64. 922s Preparing to unpack .../324-libsuperlu-dist-dev_8.2.1+dfsg1-2_arm64.deb ... 922s Unpacking libsuperlu-dist-dev:arm64 (8.2.1+dfsg1-2) ... 922s Selecting previously unselected package xorg-sgml-doctools. 922s Preparing to unpack .../325-xorg-sgml-doctools_1%3a1.11-1.1_all.deb ... 922s Unpacking xorg-sgml-doctools (1:1.11-1.1) ... 922s Selecting previously unselected package x11proto-dev. 922s Preparing to unpack .../326-x11proto-dev_2024.1-1_all.deb ... 922s Unpacking x11proto-dev (2024.1-1) ... 922s Selecting previously unselected package libxau-dev:arm64. 922s Preparing to unpack .../327-libxau-dev_1%3a1.0.11-1_arm64.deb ... 922s Unpacking libxau-dev:arm64 (1:1.0.11-1) ... 922s Selecting previously unselected package libxdmcp-dev:arm64. 922s Preparing to unpack .../328-libxdmcp-dev_1%3a1.1.3-0ubuntu6_arm64.deb ... 922s Unpacking libxdmcp-dev:arm64 (1:1.1.3-0ubuntu6) ... 923s Selecting previously unselected package xtrans-dev. 923s Preparing to unpack .../329-xtrans-dev_1.4.0-1_all.deb ... 923s Unpacking xtrans-dev (1.4.0-1) ... 923s Selecting previously unselected package libxcb1-dev:arm64. 923s Preparing to unpack .../330-libxcb1-dev_1.17.0-2_arm64.deb ... 923s Unpacking libxcb1-dev:arm64 (1.17.0-2) ... 923s Selecting previously unselected package libx11-dev:arm64. 923s Preparing to unpack .../331-libx11-dev_2%3a1.8.10-2_arm64.deb ... 923s Unpacking libx11-dev:arm64 (2:1.8.10-2) ... 923s Selecting previously unselected package libyaml-dev:arm64. 923s Preparing to unpack .../332-libyaml-dev_0.2.5-1build1_arm64.deb ... 923s Unpacking libyaml-dev:arm64 (0.2.5-1build1) ... 923s Selecting previously unselected package libpetsc3.20-dev-common. 923s Preparing to unpack .../333-libpetsc3.20-dev-common_3.20.6+dfsg1-3ubuntu3_all.deb ... 923s Unpacking libpetsc3.20-dev-common (3.20.6+dfsg1-3ubuntu3) ... 923s Selecting previously unselected package libhypre-dev:arm64. 923s Preparing to unpack .../334-libhypre-dev_2.31.0-1exp2_arm64.deb ... 923s Unpacking libhypre-dev:arm64 (2.31.0-1exp2) ... 923s Selecting previously unselected package libmumps-headers-dev. 923s Preparing to unpack .../335-libmumps-headers-dev_5.6.2-2.1build3_all.deb ... 923s Unpacking libmumps-headers-dev (5.6.2-2.1build3) ... 923s Selecting previously unselected package libmumps-dev:arm64. 923s Preparing to unpack .../336-libmumps-dev_5.6.2-2.1build3_arm64.deb ... 923s Unpacking libmumps-dev:arm64 (5.6.2-2.1build3) ... 923s Selecting previously unselected package trilinos-dev:arm64. 923s Preparing to unpack .../337-trilinos-dev_13.2.0-6_arm64.deb ... 923s Unpacking trilinos-dev:arm64 (13.2.0-6) ... 923s Selecting previously unselected package libtrilinos-aztecoo-dev:arm64. 923s Preparing to unpack .../338-libtrilinos-aztecoo-dev_13.2.0-6_arm64.deb ... 923s Unpacking libtrilinos-aztecoo-dev:arm64 (13.2.0-6) ... 923s Selecting previously unselected package libtrilinos-trilinosss-dev:arm64. 923s Preparing to unpack .../339-libtrilinos-trilinosss-dev_13.2.0-6_arm64.deb ... 923s Unpacking libtrilinos-trilinosss-dev:arm64 (13.2.0-6) ... 923s Selecting previously unselected package libtrilinos-ml-dev:arm64. 923s Preparing to unpack .../340-libtrilinos-ml-dev_13.2.0-6_arm64.deb ... 923s Unpacking libtrilinos-ml-dev:arm64 (13.2.0-6) ... 923s Selecting previously unselected package libtrilinos-zoltan-dev:arm64. 923s Preparing to unpack .../341-libtrilinos-zoltan-dev_13.2.0-6_arm64.deb ... 923s Unpacking libtrilinos-zoltan-dev:arm64 (13.2.0-6) ... 923s Selecting previously unselected package libc6-dbg:arm64. 923s Preparing to unpack .../342-libc6-dbg_2.40-1ubuntu3_arm64.deb ... 923s Unpacking libc6-dbg:arm64 (2.40-1ubuntu3) ... 924s Selecting previously unselected package valgrind. 924s Preparing to unpack .../343-valgrind_1%3a3.23.0-0ubuntu2_arm64.deb ... 924s Unpacking valgrind (1:3.23.0-0ubuntu2) ... 924s Selecting previously unselected package valgrind-mpi. 924s Preparing to unpack .../344-valgrind-mpi_1%3a3.23.0-0ubuntu2_arm64.deb ... 924s Unpacking valgrind-mpi (1:3.23.0-0ubuntu2) ... 924s Selecting previously unselected package libpetsc-real3.20-dev:arm64. 924s Preparing to unpack .../345-libpetsc-real3.20-dev_3.20.6+dfsg1-3ubuntu3_arm64.deb ... 924s Unpacking libpetsc-real3.20-dev:arm64 (3.20.6+dfsg1-3ubuntu3) ... 924s Selecting previously unselected package libparpack2-dev:arm64. 924s Preparing to unpack .../346-libparpack2-dev_3.9.1-1.1ubuntu1_arm64.deb ... 924s Unpacking libparpack2-dev:arm64 (3.9.1-1.1ubuntu1) ... 924s Selecting previously unselected package libslepc-real3.20-dev. 924s Preparing to unpack .../347-libslepc-real3.20-dev_3.20.2+dfsg1-2build1_arm64.deb ... 924s Unpacking libslepc-real3.20-dev (3.20.2+dfsg1-2build1) ... 924s Selecting previously unselected package libdolfin-dev:arm64. 924s Preparing to unpack .../348-libdolfin-dev_2019.2.0~legacy20240219.1c52e83-10ubuntu1_arm64.deb ... 924s Unpacking libdolfin-dev:arm64 (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 924s Selecting previously unselected package libopenblas64-0:arm64. 924s Preparing to unpack .../349-libopenblas64-0_0.3.28+ds-3_arm64.deb ... 924s Unpacking libopenblas64-0:arm64 (0.3.28+ds-3) ... 924s Selecting previously unselected package libopenblas64-pthread-dev:arm64. 924s Preparing to unpack .../350-libopenblas64-pthread-dev_0.3.28+ds-3_arm64.deb ... 924s Unpacking libopenblas64-pthread-dev:arm64 (0.3.28+ds-3) ... 925s Selecting previously unselected package libopenblas64-dev:arm64. 925s Preparing to unpack .../351-libopenblas64-dev_0.3.28+ds-3_arm64.deb ... 925s Unpacking libopenblas64-dev:arm64 (0.3.28+ds-3) ... 925s Selecting previously unselected package libhypre64m-dev:arm64. 925s Preparing to unpack .../352-libhypre64m-dev_2.31.0-1exp2_arm64.deb ... 925s Unpacking libhypre64m-dev:arm64 (2.31.0-1exp2) ... 925s Selecting previously unselected package libmumps64-dev:arm64. 925s Preparing to unpack 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libexpat1-dev:arm64 (2.6.2-2) ... 925s Selecting previously unselected package libjs-underscore. 925s Preparing to unpack .../358-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 925s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 925s Selecting previously unselected package libjs-sphinxdoc. 925s Preparing to unpack .../359-libjs-sphinxdoc_7.4.7-4_all.deb ... 925s Unpacking libjs-sphinxdoc (7.4.7-4) ... 925s Selecting previously unselected package libjson-perl. 925s Preparing to unpack .../360-libjson-perl_4.10000-1_all.deb ... 925s Unpacking libjson-perl (4.10000-1) ... 925s Selecting previously unselected package libpetsc-real-dev. 926s Preparing to unpack .../361-libpetsc-real-dev_3.20.6+dfsg1-3ubuntu3_all.deb ... 926s Unpacking libpetsc-real-dev (3.20.6+dfsg1-3ubuntu3) ... 926s Selecting previously unselected package libpetsc64-real-dev. 926s Preparing to unpack .../362-libpetsc64-real-dev_3.20.6+dfsg1-3ubuntu3_all.deb ... 926s Unpacking libpetsc64-real-dev (3.20.6+dfsg1-3ubuntu3) ... 926s Selecting previously unselected package libpython3.12-dev:arm64. 926s Preparing to unpack .../363-libpython3.12-dev_3.12.7-3_arm64.deb ... 926s Unpacking libpython3.12-dev:arm64 (3.12.7-3) ... 926s Selecting previously unselected package libpython3-dev:arm64. 926s Preparing to unpack .../364-libpython3-dev_3.12.7-1_arm64.deb ... 926s Unpacking libpython3-dev:arm64 (3.12.7-1) ... 926s Selecting previously unselected package libpython3.13-stdlib:arm64. 926s Preparing to unpack .../365-libpython3.13-stdlib_3.13.0-2_arm64.deb ... 926s Unpacking libpython3.13-stdlib:arm64 (3.13.0-2) ... 926s Selecting previously unselected package libpython3.13:arm64. 926s Preparing to unpack .../366-libpython3.13_3.13.0-2_arm64.deb ... 926s Unpacking libpython3.13:arm64 (3.13.0-2) ... 926s Selecting previously unselected package libpython3.13-dev:arm64. 926s Preparing to unpack .../367-libpython3.13-dev_3.13.0-2_arm64.deb ... 926s Unpacking libpython3.13-dev:arm64 (3.13.0-2) ... 926s Selecting previously unselected package libpython3-all-dev:arm64. 926s Preparing to unpack .../368-libpython3-all-dev_3.12.7-1_arm64.deb ... 926s Unpacking libpython3-all-dev:arm64 (3.12.7-1) ... 926s Selecting previously unselected package petsc64-dev. 926s Preparing to unpack .../369-petsc64-dev_3.20.6+dfsg1-3ubuntu3_all.deb ... 926s Unpacking petsc64-dev (3.20.6+dfsg1-3ubuntu3) ... 926s Selecting previously unselected package pybind11-dev. 926s Preparing to unpack .../370-pybind11-dev_2.13.6-1_all.deb ... 926s Unpacking pybind11-dev (2.13.6-1) ... 926s Selecting previously unselected package sphinx-common. 927s Preparing to unpack .../371-sphinx-common_7.4.7-4_all.deb ... 927s Unpacking sphinx-common (7.4.7-4) ... 927s Selecting previously unselected package python-petsc4py-doc. 927s Preparing to unpack .../372-python-petsc4py-doc_3.20.5-4ubuntu1_all.deb ... 927s Unpacking python-petsc4py-doc (3.20.5-4ubuntu1) ... 927s Selecting previously unselected package python3.13. 927s Preparing to unpack .../373-python3.13_3.13.0-2_arm64.deb ... 927s Unpacking python3.13 (3.13.0-2) ... 927s Selecting previously unselected package python3-all. 927s Preparing to unpack .../374-python3-all_3.12.7-1_arm64.deb ... 927s Unpacking python3-all (3.12.7-1) ... 927s Selecting previously unselected package python3.12-dev. 927s Preparing to unpack .../375-python3.12-dev_3.12.7-3_arm64.deb ... 927s Unpacking python3.12-dev (3.12.7-3) ... 927s Selecting previously unselected package python3-dev. 927s Preparing to unpack .../376-python3-dev_3.12.7-1_arm64.deb ... 927s Unpacking python3-dev (3.12.7-1) ... 927s Selecting previously unselected package python3.13-dev. 927s Preparing to unpack .../377-python3.13-dev_3.13.0-2_arm64.deb ... 927s Unpacking python3.13-dev (3.13.0-2) ... 927s Selecting previously unselected package python3-all-dev. 927s Preparing to unpack .../378-python3-all-dev_3.12.7-1_arm64.deb ... 927s Unpacking python3-all-dev (3.12.7-1) ... 927s Selecting previously unselected package python3-defusedxml. 927s Preparing to unpack .../379-python3-defusedxml_0.7.1-2_all.deb ... 927s Unpacking python3-defusedxml (0.7.1-2) ... 927s Selecting previously unselected package python3-distlib. 927s Preparing to unpack .../380-python3-distlib_0.3.9-1_all.deb ... 927s Unpacking python3-distlib (0.3.9-1) ... 927s Selecting previously unselected package python3-roman. 927s Preparing to unpack .../381-python3-roman_4.2-1_all.deb ... 927s Unpacking python3-roman (4.2-1) ... 927s Selecting previously unselected package python3-docutils. 927s Preparing to unpack .../382-python3-docutils_0.21.2+dfsg-2_all.deb ... 927s Unpacking python3-docutils (0.21.2+dfsg-2) ... 928s Selecting previously unselected package swig. 928s Preparing to unpack .../383-swig_4.2.1-1_arm64.deb ... 928s Unpacking swig (4.2.1-1) ... 928s Selecting previously unselected package python3-petsc4py-real3.20. 928s Preparing to unpack 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(2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 928s Selecting previously unselected package python3-petsc4py-64-real3.20. 928s Preparing to unpack .../389-python3-petsc4py-64-real3.20_3.20.5-4ubuntu1_arm64.deb ... 928s Unpacking python3-petsc4py-64-real3.20 (3.20.5-4ubuntu1) ... 928s Selecting previously unselected package python3-petsc4py-64-real. 928s Preparing to unpack .../390-python3-petsc4py-64-real_3.20.5-4ubuntu1_all.deb ... 928s Unpacking python3-petsc4py-64-real (3.20.5-4ubuntu1) ... 928s Selecting previously unselected package python3-slepc4py-64-real3.20. 928s Preparing to unpack .../391-python3-slepc4py-64-real3.20_3.20.2-1ubuntu2_arm64.deb ... 928s Unpacking python3-slepc4py-64-real3.20 (3.20.2-1ubuntu2) ... 928s Selecting previously unselected package python3-slepc4py-64-real. 928s Preparing to unpack .../392-python3-slepc4py-64-real_3.20.2-1ubuntu2_all.deb ... 928s Unpacking python3-slepc4py-64-real (3.20.2-1ubuntu2) ... 928s Selecting previously unselected package python3-pkgconfig. 929s Preparing to unpack .../393-python3-pkgconfig_1.5.5-2_all.deb ... 929s Unpacking python3-pkgconfig (1.5.5-2) ... 929s Selecting previously unselected package python3-pybind11. 929s Preparing to unpack .../394-python3-pybind11_2.13.6-1_all.deb ... 929s Unpacking python3-pybind11 (2.13.6-1) ... 929s Selecting previously unselected package python3-dolfin64-real. 929s Preparing to unpack .../395-python3-dolfin64-real_2019.2.0~legacy20240219.1c52e83-10ubuntu1_arm64.deb ... 929s Unpacking python3-dolfin64-real (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 929s Selecting previously unselected package python3-filelock. 929s Preparing to unpack .../396-python3-filelock_3.16.1-1_all.deb ... 929s Unpacking python3-filelock (3.16.1-1) ... 929s Selecting previously unselected package python3-imagesize. 929s Preparing to unpack .../397-python3-imagesize_1.4.1-1_all.deb ... 929s Unpacking python3-imagesize (1.4.1-1) ... 929s Selecting previously unselected package python3-iniconfig. 929s Preparing to unpack .../398-python3-iniconfig_1.1.1-2_all.deb ... 929s Unpacking python3-iniconfig (1.1.1-2) ... 929s Selecting previously unselected package python3-packaging. 929s Preparing to unpack .../399-python3-packaging_24.1-1_all.deb ... 929s Unpacking python3-packaging (24.1-1) ... 929s Selecting previously unselected package python3-wheel. 929s Preparing to unpack .../400-python3-wheel_0.44.0-1_all.deb ... 929s Unpacking python3-wheel (0.44.0-1) ... 929s Selecting previously unselected package python3-pip. 929s Preparing to unpack .../401-python3-pip_24.2+dfsg-1_all.deb ... 929s Unpacking python3-pip (24.2+dfsg-1) ... 929s Selecting previously unselected package python3-pip-whl. 929s Preparing to unpack .../402-python3-pip-whl_24.2+dfsg-1_all.deb ... 929s Unpacking python3-pip-whl (24.2+dfsg-1) ... 929s Selecting previously unselected package python3-platformdirs. 929s Preparing to unpack .../403-python3-platformdirs_4.3.6-1_all.deb ... 929s Unpacking 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libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 939s Setting up libboost-math1.83.0:arm64 (1.83.0-3.2ubuntu2) ... 939s Setting up libtsan2:arm64 (14.2.0-8ubuntu1) ... 939s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 939s Setting up python3-mpmath (1.3.0-1) ... 940s Setting up libisl23:arm64 (0.27-1) ... 940s Setting up libde265-0:arm64 (1.0.15-1build4) ... 940s Setting up valgrind (1:3.23.0-0ubuntu2) ... 940s Setting up libtasn1-6-dev:arm64 (4.19.0-3build1) ... 940s Setting up python3-wheel-whl (0.44.0-1) ... 940s Setting up valgrind-mpi (1:3.23.0-0ubuntu2) ... 940s Setting up libpython3.13-stdlib:arm64 (3.13.0-2) ... 940s Setting up libicu-dev:arm64 (74.2-1ubuntu4) ... 940s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 940s Setting up sphinx-rtd-theme-common (3.0.1+dfsg-1) ... 940s Setting up libcc1-0:arm64 (14.2.0-8ubuntu1) ... 940s Setting up python3-pusimp (0.1.1-1) ... 940s Setting up libbrotli-dev:arm64 (1.1.0-2build2) ... 940s Setting up libtrilinos-trilinosss-dev:arm64 (13.2.0-6) ... 940s Setting up libfmt10:arm64 (10.1.1+ds1-4) ... 940s Setting up chrpath (0.18-1) ... 940s Setting up liblsan0:arm64 (14.2.0-8ubuntu1) ... 940s Setting up libp11-kit-dev:arm64 (0.25.5-2ubuntu1) ... 940s Setting up libblas-dev:arm64 (3.12.0-3build2) ... 940s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 940s Setting up libsz2:arm64 (1.1.3-1) ... 940s Setting up libitm1:arm64 (14.2.0-8ubuntu1) ... 940s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 940s Setting up python3-imagesize (1.4.1-1) ... 941s Setting up libdrm-amdgpu1:arm64 (2.4.123-1) ... 941s Setting up libblas64-3:arm64 (3.12.0-3build2) ... 941s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas64/libblas64.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas64.so.3 (libblas64.so.3-aarch64-linux-gnu) in auto mode 941s Setting up libpython3.13:arm64 (3.13.0-2) ... 941s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 941s Setting up automake (1:1.16.5-1.3ubuntu1) ... 941s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode 941s Setting up x11proto-dev (2024.1-1) ... 941s Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... 941s Setting up libfabric1:arm64 (1.17.0-3ubuntu1) ... 941s Setting up python3-sympy (1.13.3-1) ... 956s Setting up libice6:arm64 (2:1.1.1-1) ... 956s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu2) ... 956s Setting up liblapack3:arm64 (3.12.0-3build2) ... 956s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 956s Setting up gettext (0.22.5-2) ... 956s Setting up libarpack2t64:arm64 (3.9.1-1.1ubuntu1) ... 956s Setting up libfftw3-single3:arm64 (3.3.10-1ubuntu4) ... 956s Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-2ubuntu7) ... 956s Setting up libamd3:arm64 (1:7.8.3+dfsg-2) ... 956s Setting up libxau-dev:arm64 (1:1.0.11-1) ... 956s Setting up nettle-dev:arm64 (3.10-1) ... 956s Setting up cpp-13-aarch64-linux-gnu (13.3.0-6ubuntu2) ... 956s Setting up libcolamd3:arm64 (1:7.8.3+dfsg-2) ... 956s Setting up python3.13 (3.13.0-2) ... 957s Setting up libspex3:arm64 (1:7.8.3+dfsg-2) ... 957s Setting up libsuitesparse-mongoose3:arm64 (1:7.8.3+dfsg-2) ... 957s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 957s Setting up python3-pytest (8.3.3-1) ... 958s Setting up libopenblas64-0-pthread:arm64 (0.3.28+ds-3) ... 958s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas64-pthread/libblas64.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas64.so.3 (libblas64.so.3-aarch64-linux-gnu) in auto mode 958s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas64-pthread/liblapack64.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack64.so.3 (liblapack64.so.3-aarch64-linux-gnu) in auto mode 958s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas64-pthread/libopenblas64.so.0 to provide /usr/lib/aarch64-linux-gnu/libopenblas64.so.0 (libopenblas64.so.0-aarch64-linux-gnu) in auto mode 958s Setting up libaec-dev:arm64 (1.1.3-1) ... 958s Setting up libcxsparse4:arm64 (1:7.8.3+dfsg-2) ... 958s Setting up libfftw3-long3:arm64 (3.3.10-1ubuntu4) ... 958s Setting up python3-virtualenv (20.27.0+ds-1) ... 958s Setting up python3-all (3.12.7-1) ... 958s Setting up libpython3.12-dev:arm64 (3.12.7-3) ... 958s Setting up libopenblas64-pthread-dev:arm64 (0.3.28+ds-3) ... 958s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas64-pthread/libblas64.so to provide /usr/lib/aarch64-linux-gnu/libblas64.so (libblas64.so-aarch64-linux-gnu) in auto mode 958s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas64-pthread/liblapack64.so to provide /usr/lib/aarch64-linux-gnu/liblapack64.so (liblapack64.so-aarch64-linux-gnu) in auto mode 958s update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas64-pthread/libopenblas64.so to provide /usr/lib/aarch64-linux-gnu/libopenblas64.so (libopenblas64.so-aarch64-linux-gnu) in auto mode 958s Setting up liblapack64-3:arm64 (3.12.0-3build2) ... 958s Setting up libsuperlu6:arm64 (6.0.1+dfsg1-1build3) ... 958s Setting up libhwloc-plugins:arm64 (2.11.2-1) ... 958s Setting up libcamd3:arm64 (1:7.8.3+dfsg-2) ... 958s Setting up libsuperlu7:arm64 (7.0.0+dfsg1-2) ... 958s Setting up pkgconf:arm64 (1.8.1-4) ... 958s Setting up intltool-debian (0.35.0+20060710.6) ... 958s Setting up libnl-route-3-dev:arm64 (3.7.0-0.3build2) ... 958s Setting up libltdl-dev:arm64 (2.4.7-7build1) ... 958s Setting up libthai0:arm64 (0.1.29-2build1) ... 958s Setting up libxdmcp-dev:arm64 (1:1.1.3-0ubuntu6) ... 958s Setting up libxml2-dev:arm64 (2.12.7+dfsg-3) ... 958s Setting up doxygen (1.9.8+ds-2ubuntu2) ... 958s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 958s Setting up librbio4:arm64 (1:7.8.3+dfsg-2) ... 958s Setting up libraqm0:arm64 (0.10.1-1build1) ... 958s Setting up libpython3.13-dev:arm64 (3.13.0-2) ... 958s Setting up opencl-clhpp-headers (3.0~2024.05.08-1ubuntu1) ... 958s Setting up libevent-dev (2.1.12-stable-10) ... 958s Setting up liblapack-dev:arm64 (3.12.0-3build2) ... 958s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 958s Setting up libeigen3-dev (3.4.0-4build1) ... 958s Setting up python3.12-dev (3.12.7-3) ... 958s Setting up pkg-config:arm64 (1.8.1-4) ... 958s Setting up libpmix2t64:arm64 (5.0.3-2) ... 958s Setting up libssh2-1-dev:arm64 (1.11.1-1) ... 958s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 962s Setting up libjs-sphinxdoc (7.4.7-4) ... 962s Setting up ocl-icd-opencl-dev:arm64 (2.3.2-1build1) ... 962s Setting up libccolamd3:arm64 (1:7.8.3+dfsg-2) ... 962s Setting up dh-strip-nondeterminism (1.14.0-1) ... 962s Setting up libopenblas64-0:arm64 (0.3.28+ds-3) ... 962s Setting up libgvpr2:arm64 (2.42.4-2build3) ... 962s Setting up python3-ufl-legacy (1:2022.3.0-3) ... 963s Setting up libgcc-13-dev:arm64 (13.3.0-6ubuntu2) ... 963s Setting up cpp-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 963s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 963s Setting up xml-core (0.19) ... 963s Setting up cmake (3.30.3-1) ... 963s Setting up libhwloc-dev:arm64 (2.11.2-1) ... 963s Setting up libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... 963s Setting up python3-pkgconfig (1.5.5-2) ... 963s Setting up libgcc-14-dev:arm64 (14.2.0-8ubuntu1) ... 963s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 963s Setting up libsuperlu-dev:arm64 (7.0.0+dfsg1-2) ... 963s Setting up libgfortran-13-dev:arm64 (13.3.0-6ubuntu2) ... 963s Setting up libstdc++-14-dev:arm64 (14.2.0-8ubuntu1) ... 963s Setting up libsm6:arm64 (2:1.2.4-1) ... 963s Setting up libpmix-dev:arm64 (5.0.3-2) ... 963s Setting up libhsakmt1:arm64 (5.7.0-1build1) ... 963s Setting up libgfortran-14-dev:arm64 (14.2.0-8ubuntu1) ... 963s Setting up libgnutls28-dev:arm64 (3.8.6-2ubuntu1) ... 963s Setting up libnghttp2-dev:arm64 (1.64.0-1) ... 963s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 965s Regenerating fonts cache... done. 965s Setting up libcholmod5:arm64 (1:7.8.3+dfsg-2) ... 965s Setting up libboost1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 965s Setting up python3-fiat (2019.2.0~git20210419.7d418fa-5) ... 966s Setting up libarpack2-dev:arm64 (3.9.1-1.1ubuntu1) ... 966s Setting up libpython3-dev:arm64 (3.12.7-1) ... 966s Setting up libxcb1-dev:arm64 (1.17.0-2) ... 966s Setting up libopenblas64-dev:arm64 (0.3.28+ds-3) ... 966s Setting up libboost-chrono1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 966s Setting up cpp-13 (13.3.0-6ubuntu2) ... 966s Setting up libboost-math1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 966s Setting up libspqr4:arm64 (1:7.8.3+dfsg-2) ... 966s Setting up libboost-chrono-dev:arm64 (1.83.0.2ubuntu1) ... 966s Setting up libfftw3-bin (3.3.10-1ubuntu4) ... 966s Setting up python3.13-dev (3.13.0-2) ... 966s Setting up libboost-math-dev:arm64 (1.83.0.2ubuntu1) ... 966s Setting up po-debconf (1.0.21+nmu1) ... 966s Setting up libpango-1.0-0:arm64 (1.54.0+ds-3) ... 966s Setting up libboost-program-options1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 966s Setting up libboost-serialization1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 966s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 966s Setting up libx11-dev:arm64 (2:1.8.10-2) ... 966s Setting up gcc-13-aarch64-linux-gnu (13.3.0-6ubuntu2) ... 966s Setting up libibverbs-dev:arm64 (52.0-2ubuntu1) ... 966s Setting up pybind11-dev (2.13.6-1) ... 966s Setting up libcairo2:arm64 (1.18.2-2) ... 966s Setting up cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 966s Setting up libboost-timer1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 966s Setting up libboost-program-options-dev:arm64 (1.83.0.2ubuntu1) ... 966s Setting up libklu2:arm64 (1:7.8.3+dfsg-2) ... 966s Setting up libpython3-all-dev:arm64 (3.12.7-1) ... 966s Setting up libboost-date-time1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 966s Setting up sphinx-common (7.4.7-4) ... 966s Setting up python3-dev (3.12.7-1) ... 966s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ... 966s Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2build7) ... 966s Setting up gcc-13 (13.3.0-6ubuntu2) ... 966s Setting up libboost-regex1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 966s Setting up libboost-serialization-dev:arm64 (1.83.0.2ubuntu1) ... 966s Setting up libboost-atomic1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 966s Setting up cpp-14 (14.2.0-8ubuntu1) ... 966s Setting up libumfpack6:arm64 (1:7.8.3+dfsg-2) ... 966s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 966s Setting up cpp (4:14.1.0-2ubuntu1) ... 966s Setting up libboost-dev:arm64 (1.83.0.2ubuntu1) ... 966s Setting up gcc-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 966s Setting up libboost-system1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 966s Setting up libpangoft2-1.0-0:arm64 (1.54.0+ds-3) ... 966s Setting up libfftw3-dev:arm64 (3.3.10-1ubuntu4) ... 966s Setting up libboost-timer-dev:arm64 (1.83.0.2ubuntu1) ... 966s Setting up python3-pybind11 (2.13.6-1) ... 966s Setting up libpangocairo-1.0-0:arm64 (1.54.0+ds-3) ... 966s Setting up python3-all-dev (3.12.7-1) ... 966s Setting up libboost-thread1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 966s Setting up gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 966s Setting up libxmu6:arm64 (2:1.1.3-3build2) ... 966s Setting up g++-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 966s Setting up libtool (2.4.7-7build1) ... 966s Setting up libboost-iostreams1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 966s Setting up gfortran-13-aarch64-linux-gnu (13.3.0-6ubuntu2) ... 966s Setting up libboost-filesystem1.83-dev:arm64 (1.83.0-3.2ubuntu2) ... 966s Setting up libxaw7:arm64 (2:1.0.16-1) ... 966s Setting up libboost-iostreams-dev:arm64 (1.83.0.2ubuntu1) ... 966s Setting up python-petsc4py-doc (3.20.5-4ubuntu1) ... 966s Setting up libparu1:arm64 (1:7.8.3+dfsg-2) ... 966s Setting up gcc-14 (14.2.0-8ubuntu1) ... 966s Setting up dh-autoreconf (20) ... 966s Setting up libamdhip64-5 (5.7.1-5) ... 966s Setting up libcurl4-openssl-dev:arm64 (8.9.1-2ubuntu2) ... 966s Setting up gfortran-13 (13.3.0-6ubuntu2) ... 966s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 966s Setting up g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 966s Setting up gfortran-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 966s Setting up g++-14 (14.2.0-8ubuntu1) ... 966s Setting up gfortran-14 (14.2.0-8ubuntu1) ... 966s Setting up libboost-filesystem-dev:arm64 (1.83.0.2ubuntu1) ... 966s Setting up libboost-thread-dev:arm64 (1.83.0.2ubuntu1) ... 966s Setting up libucx0:arm64 (1.17.0+ds-3build1) ... 966s Setting up libsuitesparse-dev:arm64 (1:7.8.3+dfsg-2) ... 966s Setting up debhelper (13.20ubuntu1) ... 966s Setting up gcc (4:14.1.0-2ubuntu1) ... 966s Setting up libopenmpi3t64:arm64 (4.1.6-13.3ubuntu2) ... 966s Setting up g++ (4:14.1.0-2ubuntu1) ... 966s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 966s Setting up libparpack2t64:arm64 (3.9.1-1.1ubuntu1) ... 966s Setting up build-essential (12.10ubuntu1) ... 966s Setting up libboost-mpi1.83.0 (1.83.0-3.2ubuntu2) ... 966s Setting up openmpi-bin (4.1.6-13.3ubuntu2) ... 966s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 966s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 966s Setting up libptscotch-7.0:arm64 (7.0.5-1ubuntu1) ... 966s Setting up mpi-default-bin (1.17) ... 966s Setting up libcombblas2.0.0t64:arm64 (2.0.0-3.1build3) ... 966s Setting up libfftw3-mpi3:arm64 (3.3.10-1ubuntu4) ... 966s Setting up python3-mpi4py (3.1.6-9ubuntu1) ... 966s Setting up libtrilinos-zoltan-13.2:arm64 (13.2.0-6) ... 966s Setting up gfortran (4:14.1.0-2ubuntu1) ... 966s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 966s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 966s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 966s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 966s Setting up libhdf5-openmpi-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 966s Setting up libtrilinos-teuchos-13.2:arm64 (13.2.0-6) ... 966s Setting up libtrilinos-epetra-13.2:arm64 (13.2.0-6) ... 966s Setting up libtrilinos-zoltan-dev:arm64 (13.2.0-6) ... 966s Setting up libtrilinos-aztecoo-13.2:arm64 (13.2.0-6) ... 966s Setting up libhdf5-openmpi-fortran-102t64:arm64 (1.10.10+repack-4ubuntu3) ... 966s Setting up libhdf5-openmpi-cpp-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 966s Setting up libtrilinos-aztecoo-dev:arm64 (13.2.0-6) ... 966s Setting up libopenmpi-dev:arm64 (4.1.6-13.3ubuntu2) ... 966s update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode 966s Setting up libtrilinos-triutils-13.2:arm64 (13.2.0-6) ... 966s Setting up libscalapack-openmpi2.2:arm64 (2.2.1-3.1ubuntu2) ... 966s Setting up python3-dijitso (2019.2.0~git20190418.c92dcb0-4) ... 966s Setting up libsuperlu-dist8:arm64 (8.2.1+dfsg1-2) ... 966s Setting up python3-ffc (2019.2.0~legacy20230509.35df986-3) ... 967s Setting up libfftw3-mpi-dev:arm64 (3.3.10-1ubuntu4) ... 967s Setting up libhdf5-openmpi-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 967s Setting up libsuperlu-dist-dev:arm64 (8.2.1+dfsg1-2) ... 967s Setting up libhdf5-openmpi-hl-fortran-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 967s Setting up libmumps-5.6t64:arm64 (5.6.2-2.1build3) ... 967s Setting up libhypre-2.31.0:arm64 (2.31.0-1exp2) ... 967s Setting up libhypre64m-2.31.0:arm64 (2.31.0-1exp2) ... 967s Setting up libtrilinos-epetraext-13.2:arm64 (13.2.0-6) ... 967s Setting up libscalapack-openmpi-dev:arm64 (2.2.1-3.1ubuntu2) ... 967s Setting up libtrilinos-galeri-13.2:arm64 (13.2.0-6) ... 967s Setting up mpi-default-dev (1.17) ... 967s Setting up libhdf5-openmpi-hl-cpp-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 967s Setting up libmumps-64pord-5.6t64:arm64 (5.6.2-2.1build3) ... 967s Setting up libtrilinos-amesos-13.2:arm64 (13.2.0-6) ... 967s Setting up libhypre64m-dev:arm64 (2.31.0-1exp2) ... 967s Setting up libscalapack-mpi-dev:arm64 (2.2.1-3.1ubuntu2) ... 967s Setting up libhdf5-openmpi-dev (1.10.10+repack-4ubuntu3) ... 967s update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode 967s update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 967s update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links 967s update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-mpi.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 967s Setting up libmumps64-dev:arm64 (5.6.2-2.1build3) ... 967s Setting up libmumps-dev:arm64 (5.6.2-2.1build3) ... 967s Setting up libscotch-dev (7.0.5-1ubuntu1) ... 967s Setting up libparpack2-dev:arm64 (3.9.1-1.1ubuntu1) ... 967s Setting up libhypre-dev:arm64 (2.31.0-1exp2) ... 967s Setting up libptscotch-dev (7.0.5-1ubuntu1) ... 967s Setting up libpetsc64-real3.20:arm64 (3.20.6+dfsg1-3ubuntu3) ... 967s update-alternatives: using /usr/lib/aarch64-linux-gnu/libpetsc64_real.so.3.20.6 to provide /usr/lib/aarch64-linux-gnu/libpetsc64.so.3.20 (libpetsc64.so.3.20) in auto mode 967s Setting up libboost-mpi1.83-dev (1.83.0-3.2ubuntu2) ... 967s Setting up libboost-mpi-dev (1.83.0.2ubuntu1) ... 967s Setting up python3-petsc4py-64-real3.20 (3.20.5-4ubuntu1) ... 967s Setting up libtrilinos-ifpack-13.2:arm64 (13.2.0-6) ... 967s Setting up libhdf5-mpi-dev (1.10.10+repack-4ubuntu3) ... 967s Setting up libslepc64-real3.20 (3.20.2+dfsg1-2build1) ... 967s update-alternatives: using /usr/lib/aarch64-linux-gnu/libslepc64_real.so.3.20.2 to provide /usr/lib/aarch64-linux-gnu/libslepc64.so.3.20 (libslepc64.so.3.20) in auto mode 967s Setting up python3-petsc4py (3.20.5-4ubuntu1) ... 967s Setting up libtrilinos-ml-13.2:arm64 (13.2.0-6) ... 967s Setting up libpetsc3.20-dev-common (3.20.6+dfsg1-3ubuntu3) ... 967s /usr/share/petsc/3.20/lib/petsc/bin/petsc_tas_analysis.py:792: SyntaxWarning: invalid escape sequence '\l' 967s axMeshConv.set(xlabel='Problem Size $\log N$', 967s /usr/share/petsc/3.20/lib/petsc/bin/petsc_tas_analysis.py:793: SyntaxWarning: invalid escape sequence '\l' 967s ylabel='Error $\log |x - x^*|$', title='Mesh Convergence') 967s /usr/share/petsc/3.20/lib/petsc/bin/petsclogformat.py:253: SyntaxWarning: invalid escape sequence '\d' 967s print("\documentclass{article}") 967s /usr/share/petsc/3.20/lib/petsc/bin/petsclogformat.py:256: SyntaxWarning: invalid escape sequence '\c' 967s print("\centering") 967s /usr/share/petsc/3.20/lib/petsc/bin/petsclogformat.py:259: SyntaxWarning: invalid escape sequence '\m' 967s print(" & & \multicolumn{4}{c}{--------------- Percent of -------------} & \\\\") 967s /usr/share/petsc/3.20/lib/petsc/bin/petsclogformat.py:261: SyntaxWarning: invalid escape sequence '\h' 967s print("\hline") 967s /usr/share/petsc/3.20/lib/petsc/bin/petsclogformat.py:321: SyntaxWarning: invalid escape sequence '\e' 967s print("\end{tabular}") 967s /usr/share/petsc/3.20/lib/petsc/bin/petsclogformat.py:322: SyntaxWarning: invalid escape sequence '\e' 967s print("\end{table}") 967s /usr/share/petsc/3.20/lib/petsc/bin/petsclogformat.py:323: SyntaxWarning: invalid escape sequence '\e' 967s print("\end{document}") 967s Setting up libtrilinos-ml-dev:arm64 (13.2.0-6) ... 967s Setting up libpetsc64-real3.20-dev:arm64 (3.20.6+dfsg1-3ubuntu3) ... 967s update-alternatives: using /usr/lib/petscdir/petsc64-3.20/aarch64-linux-gnu-real to provide /usr/lib/petsc64 (petsc64) in auto mode 967s update-alternatives: using /usr/lib/aarch64-linux-gnu/libpetsc64_real.so.3.20.6 to provide /usr/lib/aarch64-linux-gnu/libpetsc64_real.so (libpetsc64_real.so) in auto mode 967s update-alternatives: using /usr/lib/petscdir/petsc64-3.20/aarch64-linux-gnu-real to provide /usr/lib/petscdir/64-3.20 (petsc64-3.20) in auto mode 967s Setting up libpetsc-real3.20:arm64 (3.20.6+dfsg1-3ubuntu3) ... 967s update-alternatives: using /usr/lib/aarch64-linux-gnu/libpetsc_real.so.3.20.6 to provide /usr/lib/aarch64-linux-gnu/libpetsc.so.3.20 (libpetsc.so.3.20) in auto mode 967s Setting up python3-petsc4py-64-real (3.20.5-4ubuntu1) ... 967s Setting up python3-slepc4py-64-real3.20 (3.20.2-1ubuntu2) ... 967s Setting up libdolfin64-2019.2t64:arm64 (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 967s Setting up libslepc64-real3.20-dev (3.20.2+dfsg1-2build1) ... 967s update-alternatives: using /usr/lib/slepcdir/slepc64-3.20/aarch64-linux-gnu-real to provide /usr/lib/slepc64 (slepc64) in auto mode 967s update-alternatives: using /usr/lib/aarch64-linux-gnu/libslepc64_real.so.3.20.2 to provide /usr/lib/aarch64-linux-gnu/libslepc64_real.so (libslepc64_real.so) in auto mode 967s update-alternatives: using /usr/lib/slepcdir/slepc64-3.20/aarch64-linux-gnu-real to provide /usr/lib/slepcdir/64bit-3.20 (slepc64-3.20) in auto mode 967s Setting up python3-slepc4py (3.20.2-1ubuntu2) ... 967s Setting up python3-slepc4py-64-real (3.20.2-1ubuntu2) ... 967s Setting up libslepc-real3.20 (3.20.2+dfsg1-2build1) ... 967s update-alternatives: using /usr/lib/aarch64-linux-gnu/libslepc_real.so.3.20.2 to provide /usr/lib/aarch64-linux-gnu/libslepc.so.3.20 (libslepc.so.3.20) in auto mode 967s Setting up libpetsc64-real-dev (3.20.6+dfsg1-3ubuntu3) ... 967s Setting up petsc64-dev (3.20.6+dfsg1-3ubuntu3) ... 967s Setting up slepc64-dev (3.20.2+dfsg1-2build1) ... 967s Setting up python3-petsc4py-real3.20 (3.20.5-4ubuntu1) ... 968s Setting up libdolfin2019.2t64:arm64 (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 968s Setting up libpetsc-real3.20-dev:arm64 (3.20.6+dfsg1-3ubuntu3) ... 968s update-alternatives: error: no alternatives for petsc 968s update-alternatives: using /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real to provide /usr/lib/petsc (petsc) in auto mode 968s update-alternatives: using /usr/lib/aarch64-linux-gnu/libpetsc_real.so.3.20.6 to provide /usr/lib/aarch64-linux-gnu/libpetsc_real.so (libpetsc_real.so) in auto mode 968s update-alternatives: using /usr/lib/petscdir/petsc3.20/aarch64-linux-gnu-real to provide /usr/lib/petscdir/3.20 (petsc3.20) in auto mode 968s Setting up python3-slepc4py-real3.20 (3.20.2-1ubuntu2) ... 968s Setting up libslepc-real3.20-dev (3.20.2+dfsg1-2build1) ... 968s update-alternatives: error: no alternatives for slepc 968s update-alternatives: using /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real to provide /usr/lib/slepc (slepc) in auto mode 968s update-alternatives: using /usr/lib/aarch64-linux-gnu/libslepc_real.so.3.20.2 to provide /usr/lib/aarch64-linux-gnu/libslepc_real.so (libslepc_real.so) in auto mode 968s update-alternatives: using /usr/lib/slepcdir/slepc3.20/aarch64-linux-gnu-real to provide /usr/lib/slepcdir/3.20 (slepc3.20) in auto mode 968s Setting up slepc-dev (3.20.2+dfsg1-2build1) ... 968s Setting up libpetsc-real-dev (3.20.6+dfsg1-3ubuntu3) ... 968s Setting up python3-slepc4py-real (3.20.2-1ubuntu2) ... 968s Setting up libdolfin-dev:arm64 (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 968s Setting up python3-petsc4py-real (3.20.5-4ubuntu1) ... 968s Setting up libdolfin64-dev:arm64 (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 968s Setting up petsc-dev (3.20.6+dfsg1-3ubuntu3) ... 968s Setting up python3-dolfin64-real (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 968s Setting up python3-dolfin-real (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 968s Setting up python3-dolfin (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 968s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:509: SyntaxWarning: invalid escape sequence '\ ' 968s _error("Missing data, unable to convert \n\ Did you use version 2.0 of the gmsh file format?") 968s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:865: SyntaxWarning: invalid escape sequence '\s' 968s x = list(map(float, re.split("[\s,]+", m.group(1)))) 968s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:1187: SyntaxWarning: invalid escape sequence '\s' 968s dim = int(re.match(".*\s=\s(\d+)\s;",line).group(1)) 968s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:1189: SyntaxWarning: invalid escape sequence '\s' 968s num_vertices = int(re.match(".*\s=\s(\d+)\s;",line).group(1)) 968s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:1191: SyntaxWarning: invalid escape sequence '\s' 968s num_cells = int(re.match(".*\s=\s(\d+)\s;",line).group(1)) 968s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:509: SyntaxWarning: invalid escape sequence '\ ' 968s _error("Missing data, unable to convert \n\ Did you use version 2.0 of the gmsh file format?") 968s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:865: SyntaxWarning: invalid escape sequence '\s' 968s x = list(map(float, re.split("[\s,]+", m.group(1)))) 968s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:1187: SyntaxWarning: invalid escape sequence '\s' 968s dim = int(re.match(".*\s=\s(\d+)\s;",line).group(1)) 968s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:1189: SyntaxWarning: invalid escape sequence '\s' 968s num_vertices = int(re.match(".*\s=\s(\d+)\s;",line).group(1)) 968s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:1191: SyntaxWarning: invalid escape sequence '\s' 968s num_cells = int(re.match(".*\s=\s(\d+)\s;",line).group(1)) 968s Setting up dolfin-doc (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 968s Setting up dolfin-bin (2019.2.0~legacy20240219.1c52e83-10ubuntu1) ... 968s Setting up libheif-plugin-aomdec:arm64 (1.18.1-2) ... 968s Setting up libheif-plugin-libde265:arm64 (1.18.1-2) ... 968s Setting up libheif1:arm64 (1.18.1-2) ... 968s Setting up libgd3:arm64 (2.3.3-12ubuntu3) ... 968s Setting up libgvc6 (2.42.4-2build3) ... 968s Setting up graphviz (2.42.4-2build3) ... 968s Processing triggers for libc-bin (2.40-1ubuntu3) ... 968s Processing triggers for systemd (256.5-2ubuntu4) ... 968s Processing triggers for man-db (2.12.1-3) ... 970s Processing triggers for install-info (7.1.1-1) ... 970s Processing triggers for sgml-base (1.31) ... 970s Setting up docutils-common (0.21.2+dfsg-2) ... 970s Processing triggers for sgml-base (1.31) ... 970s Setting up python3-docutils (0.21.2+dfsg-2) ... 971s Setting up python3-sphinx (7.4.7-4) ... 973s Setting up python3-sphinxcontrib.jquery (4.1-5) ... 973s Setting up python3-sphinx-rtd-theme (3.0.1+dfsg-1) ... 973s Setting up autopkgtest-satdep (0) ... 994s (Reading database ... 130943 files and directories currently installed.) 994s Removing autopkgtest-satdep (0) ... 1001s autopkgtest [09:22:19]: test test-dolfin-python-pusimp: [----------------------- 1001s === python 3.13 pusimp test === 1001s ============================= test session starts ============================== 1001s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13 1001s cachedir: .pytest_cache 1001s rootdir: /tmp/autopkgtest.ShOyTP/build.fwM/src/python 1001s plugins: typeguard-4.4.1 1002s collecting ... collected 10 items 1002s 1003s python/test/debian-only/test_pusimp.py::test_dolfin_import_success_without_local_packages FAILED 1149s python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_local_packages[dependencies_import_name0-dependencies_pypi_name0-dependencies_extra_error_message0] Package dolfin did fail to import with error: 1149s Importing dolfin was not successful. 1149s stdout contains 1149s stderr contains Traceback (most recent call last): 1149s File "", line 1, in 1149s import dolfin 1149s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 1149s pusimp.prevent_user_site_imports( 1149s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1149s "dolfin", "apt", "https://fenicsproject.discourse.group/", 1149s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1149s ...<8 lines>... 1149s pip_uninstall_call 1149s ^^^^^^^^^^^^^^^^^^ 1149s ) 1149s ^ 1149s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 1149s raise ImportError(import_error) 1149s ImportError: pusimp has detected the following problems with dolfin dependencies: 1149s 1) Dependencies imported from a local path rather than from the path provided by apt: 1149s * ufl_legacy was imported from a local path: expected in /usr/lib/python3/dist-packages/ufl_legacy/__init__.py, but imported from /tmp/tmpf1zu9b9g/venv/lib/python3.13/site-packages/ufl_legacy/__init__.py. 1149s 1149s pusimp suggests to apply all of the following fixes: 1149s 1) To uninstall local dependencies: 1149s * run '/tmp/tmpf1zu9b9g/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, and verify that you are prompted to confirm removal of files in /tmp/tmpf1zu9b9g/venv/lib/python3.13/site-packages/ufl_legacy. 1149s 1149s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 1149s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 1149s FAILED 1161s python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_local_packages[dependencies_import_name1-dependencies_pypi_name1-dependencies_extra_error_message1] Package dolfin did fail to import with error: 1161s Importing dolfin was not successful. 1161s stdout contains 1161s stderr contains Traceback (most recent call last): 1161s File "", line 1, in 1161s import dolfin 1161s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 1161s pusimp.prevent_user_site_imports( 1161s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1161s "dolfin", "apt", "https://fenicsproject.discourse.group/", 1161s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1161s ...<8 lines>... 1161s pip_uninstall_call 1161s ^^^^^^^^^^^^^^^^^^ 1161s ) 1161s ^ 1161s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 1161s raise ImportError(import_error) 1161s ImportError: pusimp has detected the following problems with dolfin dependencies: 1161s 1) Dependencies imported from a local path rather than from the path provided by apt: 1161s * ufl was imported from a local path: expected in /usr/lib/python3/dist-packages/ufl/__init__.py, but imported from /tmp/tmpsl25e3yg/venv/lib/python3.13/site-packages/ufl/__init__.py. 1161s 1161s pusimp suggests to apply all of the following fixes: 1161s 1) To uninstall local dependencies: 1161s * run '/tmp/tmpsl25e3yg/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ufl' in a terminal, and verify that you are prompted to confirm removal of files in /tmp/tmpsl25e3yg/venv/lib/python3.13/site-packages/ufl. Be aware that legacy dolfin codes must now import ufl_legacy instead of ufl, see https://fenicsproject.discourse.group/t/announcement-ufl-legacy-and-legacy-dolfin/11583 . 1161s 1161s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 1161s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 1161s FAILED 1188s python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_local_packages[dependencies_import_name2-dependencies_pypi_name2-dependencies_extra_error_message2] Package dolfin did fail to import with error: 1188s Importing dolfin was not successful. 1188s stdout contains 1188s stderr contains Traceback (most recent call last): 1188s File "", line 1, in 1188s import dolfin 1188s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 1188s pusimp.prevent_user_site_imports( 1188s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1188s "dolfin", "apt", "https://fenicsproject.discourse.group/", 1188s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1188s ...<8 lines>... 1188s pip_uninstall_call 1188s ^^^^^^^^^^^^^^^^^^ 1188s ) 1188s ^ 1188s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 1188s raise ImportError(import_error) 1188s ImportError: pusimp has detected the following problems with dolfin dependencies: 1188s 1) Dependencies imported from a local path rather than from the path provided by apt: 1188s * FIAT was imported from a local path: expected in /usr/lib/python3/dist-packages/FIAT/__init__.py, but imported from /tmp/tmpowjz12xx/venv/lib/python3.13/site-packages/FIAT/__init__.py. 1188s * ufl_legacy was imported from a local path: expected in /usr/lib/python3/dist-packages/ufl_legacy/__init__.py, but imported from /tmp/tmpowjz12xx/venv/lib/python3.13/site-packages/ufl_legacy/__init__.py. 1188s 1188s pusimp suggests to apply all of the following fixes: 1188s 1) To uninstall local dependencies: 1188s * run '/tmp/tmpowjz12xx/venv/bin/python3 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, and verify that you are prompted to confirm removal of files in /tmp/tmpowjz12xx/venv/lib/python3.13/site-packages/FIAT. 1188s * run '/tmp/tmpowjz12xx/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, and verify that you are prompted to confirm removal of files in /tmp/tmpowjz12xx/venv/lib/python3.13/site-packages/ufl_legacy. 1188s 1188s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 1188s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 1188s FAILED 1203s python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_local_packages[dependencies_import_name3-dependencies_pypi_name3-dependencies_extra_error_message3] Package dolfin did fail to import with error: 1203s Importing dolfin was not successful. 1203s stdout contains 1203s stderr contains Traceback (most recent call last): 1203s File "", line 1, in 1203s import dolfin 1203s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 1203s pusimp.prevent_user_site_imports( 1203s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1203s "dolfin", "apt", "https://fenicsproject.discourse.group/", 1203s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1203s ...<8 lines>... 1203s pip_uninstall_call 1203s ^^^^^^^^^^^^^^^^^^ 1203s ) 1203s ^ 1203s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 1203s raise ImportError(import_error) 1203s ImportError: pusimp has detected the following problems with dolfin dependencies: 1203s 1) Dependencies imported from a local path rather than from the path provided by apt: 1203s * ufl_legacy was imported from a local path: expected in /usr/lib/python3/dist-packages/ufl_legacy/__init__.py, but imported from /tmp/tmpjowomn2z/venv/lib/python3.13/site-packages/ufl_legacy/__init__.py. 1203s * ufl was imported from a local path: expected in /usr/lib/python3/dist-packages/ufl/__init__.py, but imported from /tmp/tmpjowomn2z/venv/lib/python3.13/site-packages/ufl/__init__.py. 1203s 1203s pusimp suggests to apply all of the following fixes: 1203s 1) To uninstall local dependencies: 1203s * run '/tmp/tmpjowomn2z/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, and verify that you are prompted to confirm removal of files in /tmp/tmpjowomn2z/venv/lib/python3.13/site-packages/ufl_legacy. 1203s * run '/tmp/tmpjowomn2z/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ufl' in a terminal, and verify that you are prompted to confirm removal of files in /tmp/tmpjowomn2z/venv/lib/python3.13/site-packages/ufl. Be aware that legacy dolfin codes must now import ufl_legacy instead of ufl, see https://fenicsproject.discourse.group/t/announcement-ufl-legacy-and-legacy-dolfin/11583 . 1203s 1203s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 1203s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 1203s FAILED 1212s python/test/debian-only/test_pusimp.py::test_dolfin_import_success_with_allowed_local_packages[dependencies_import_name0-dependencies_pypi_name0] FAILED 1220s python/test/debian-only/test_pusimp.py::test_dolfin_import_success_with_allowed_local_packages[dependencies_import_name1-dependencies_pypi_name1] FAILED 1223s python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_broken_non_optional_packages[dependencies_import_name0] Package dolfin did fail to import with error: 1223s Importing dolfin was not successful. 1223s stdout contains 1223s stderr contains Traceback (most recent call last): 1223s File "", line 1, in 1223s import dolfin 1223s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 1223s pusimp.prevent_user_site_imports( 1223s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1223s "dolfin", "apt", "https://fenicsproject.discourse.group/", 1223s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1223s ...<8 lines>... 1223s pip_uninstall_call 1223s ^^^^^^^^^^^^^^^^^^ 1223s ) 1223s ^ 1223s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 1223s raise ImportError(import_error) 1223s ImportError: pusimp has detected the following problems with dolfin dependencies: 1223s 1) Broken dependencies: 1223s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 1223s its source directory; please exit the numpy source tree, and relaunch 1223s your python interpreter from there.'. 1223s * ffc is broken. Error on import was 'ufl_legacy was purposely broken.'. 1223s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 1223s its source directory; please exit the numpy source tree, and relaunch 1223s your python interpreter from there.'. 1223s * ufl_legacy is broken. Error on import was 'ufl_legacy was purposely broken.'. 1223s 1223s pusimp suggests to apply all of the following fixes: 1223s 1) To fix broken dependencies: 1223s * run '/tmp/tmpbvea2zyb/venv/bin/python3 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/tmp/tmpbvea2zyb/venv/bin/python3 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 1223s * run '/tmp/tmpbvea2zyb/venv/bin/python3 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/tmp/tmpbvea2zyb/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 1223s * run '/tmp/tmpbvea2zyb/venv/bin/python3 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/tmp/tmpbvea2zyb/venv/bin/python3 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 1223s * run '/tmp/tmpbvea2zyb/venv/bin/python3 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/tmp/tmpbvea2zyb/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 1223s 1223s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 1223s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 1223s PASSED 1226s python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_broken_non_optional_packages[dependencies_import_name1] Package dolfin did fail to import with error: 1226s Importing dolfin was not successful. 1226s stdout contains 1226s stderr contains Traceback (most recent call last): 1226s File "", line 1, in 1226s import dolfin 1226s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 1226s pusimp.prevent_user_site_imports( 1226s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1226s "dolfin", "apt", "https://fenicsproject.discourse.group/", 1226s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1226s ...<8 lines>... 1226s pip_uninstall_call 1226s ^^^^^^^^^^^^^^^^^^ 1226s ) 1226s ^ 1226s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 1226s raise ImportError(import_error) 1226s ImportError: pusimp has detected the following problems with dolfin dependencies: 1226s 1) Broken dependencies: 1226s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 1226s its source directory; please exit the numpy source tree, and relaunch 1226s your python interpreter from there.'. 1226s * ffc is broken. Error on import was 'ffc was purposely broken.'. 1226s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 1226s its source directory; please exit the numpy source tree, and relaunch 1226s your python interpreter from there.'. 1226s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 1226s its source directory; please exit the numpy source tree, and relaunch 1226s your python interpreter from there.'. 1226s 1226s pusimp suggests to apply all of the following fixes: 1226s 1) To fix broken dependencies: 1226s * run '/tmp/tmpr2d4u2pv/venv/bin/python3 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/tmp/tmpr2d4u2pv/venv/bin/python3 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 1226s * run '/tmp/tmpr2d4u2pv/venv/bin/python3 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/tmp/tmpr2d4u2pv/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 1226s * run '/tmp/tmpr2d4u2pv/venv/bin/python3 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/tmp/tmpr2d4u2pv/venv/bin/python3 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 1226s * run '/tmp/tmpr2d4u2pv/venv/bin/python3 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/tmp/tmpr2d4u2pv/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 1226s 1226s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 1226s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 1226s PASSED 1230s python/test/debian-only/test_pusimp.py::test_dolfin_import_success_with_broken_optional_packages[dependencies_import_name0] FAILED 1230s 1230s =================================== FAILURES =================================== 1230s ______________ test_dolfin_import_success_without_local_packages _______________ 1230s 1230s def test_dolfin_import_success_without_local_packages() -> None: 1230s """Test that dolfin imports correctly without any extra local packages.""" 1230s > assert_package_import_success_without_local_packages( 1230s "dolfin", "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py" 1230s ) 1230s 1230s python/test/debian-only/test_pusimp.py:47: 1230s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1230s /usr/lib/python3/dist-packages/pusimp/utils.py:202: in assert_package_import_success_without_local_packages 1230s assert_package_location(sys.executable, package, package_path) 1230s /usr/lib/python3/dist-packages/pusimp/utils.py:47: in assert_package_location 1230s assert_has_package(executable, package) 1230s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1230s 1230s executable = '/usr/bin/python3.13', package = 'dolfin' 1230s 1230s def assert_has_package(executable: str, package: str) -> None: 1230s """Assert that a package is installed. 1230s 1230s Note that it is not safe to simply import the package in the current pytest environment, 1230s since the environment itself might change from one test to the other, but python packages 1230s can be imported only once and not unloaded. 1230s """ 1230s run_import = subprocess.run(f"{executable} -c 'import {package}'", shell=True, capture_output=True) 1230s > assert run_import.returncode == 0, ( 1230s f"Importing {package} was not successful.\n" 1230s f"stdout contains {run_import.stdout.decode().strip()}\n" 1230s f"stderr contains {run_import.stderr.decode().strip()}" 1230s ) 1230s E AssertionError: Importing dolfin was not successful. 1230s E stdout contains 1230s E stderr contains Traceback (most recent call last): 1230s E File "", line 1, in 1230s E import dolfin 1230s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 1230s E pusimp.prevent_user_site_imports( 1230s E ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1230s E "dolfin", "apt", "https://fenicsproject.discourse.group/", 1230s E ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1230s E ...<8 lines>... 1230s E pip_uninstall_call 1230s E ^^^^^^^^^^^^^^^^^^ 1230s E ) 1230s E ^ 1230s E File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 1230s E raise ImportError(import_error) 1230s E ImportError: pusimp has detected the following problems with dolfin dependencies: 1230s E 1) Broken dependencies: 1230s E * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 1230s E its source directory; please exit the numpy source tree, and relaunch 1230s E your python interpreter from there.'. 1230s E * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 1230s E its source directory; please exit the numpy source tree, and relaunch 1230s E your python interpreter from there.'. 1230s E * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 1230s E its source directory; please exit the numpy source tree, and relaunch 1230s E your python interpreter from there.'. 1230s E * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 1230s E its source directory; please exit the numpy source tree, and relaunch 1230s E your python interpreter from there.'. 1230s E 1230s E pusimp suggests to apply all of the following fixes: 1230s E 1) To fix broken dependencies: 1230s E * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 1230s E * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 1230s E * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 1230s E * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 1230s E 1230s E You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 1230s E If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 1230s 1230s /usr/lib/python3/dist-packages/pusimp/utils.py:32: AssertionError 1230s _ test_dolfin_import_errors_with_local_packages[dependencies_import_name0-dependencies_pypi_name0-dependencies_extra_error_message0] _ 1230s 1230s dependencies_import_name = ['ufl_legacy'] 1230s dependencies_pypi_name = ['fenics-ufl-legacy'] 1230s dependencies_extra_error_message = [] 1230s 1230s @pytest.mark.skipif(not has_internet, reason="Requires downloading from pypi.org") 1230s @pytest.mark.parametrize("dependencies_import_name,dependencies_pypi_name,dependencies_extra_error_message", [ 1230s (["ufl_legacy"], ["fenics-ufl-legacy"], []), 1230s (["ufl"], ["fenics-ufl"], [UFL_LEGACY_WARNING]), 1230s (["FIAT", "ufl_legacy"], ["fenics-fiat", "fenics-ufl-legacy"], []), 1230s (["ufl", "ufl_legacy"], ["fenics-ufl", "fenics-ufl-legacy"], [UFL_LEGACY_WARNING]) 1230s ]) 1230s def test_dolfin_import_errors_with_local_packages( 1230s dependencies_import_name: typing.List[str], dependencies_pypi_name: typing.List[str], 1230s dependencies_extra_error_message: typing.List[str] 1230s ) -> None: 1230s """Test that dolfin fails to import with extra local packages.""" 1230s > assert_package_import_errors_with_local_packages( 1230s "dolfin", dependencies_import_name, dependencies_pypi_name, dependencies_extra_error_message, 1230s pip_install_call, pip_uninstall_call 1230s ) 1230s 1230s python/test/debian-only/test_pusimp.py:64: 1230s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1230s /usr/lib/python3/dist-packages/pusimp/utils.py:238: in assert_package_import_errors_with_local_packages 1230s assert_has_package(virtual_env.executable, package) 1230s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1230s 1230s executable = '/tmp/tmpf1zu9b9g/venv/bin/python3', package = 'dolfin' 1230s 1230s def assert_has_package(executable: str, package: str) -> None: 1230s """Assert that a package is installed. 1230s 1230s Note that it is not safe to simply import the package in the current pytest environment, 1230s since the environment itself might change from one test to the other, but python packages 1230s can be imported only once and not unloaded. 1230s """ 1230s run_import = subprocess.run(f"{executable} -c 'import {package}'", shell=True, capture_output=True) 1230s > assert run_import.returncode == 0, ( 1230s f"Importing {package} was not successful.\n" 1230s f"stdout contains {run_import.stdout.decode().strip()}\n" 1230s f"stderr contains {run_import.stderr.decode().strip()}" 1230s ) 1230s E AssertionError: Importing dolfin was not successful. 1230s E stdout contains 1230s E stderr contains Traceback (most recent call last): 1230s E File "", line 1, in 1230s E import dolfin 1230s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 60, in 1230s E from .cpp import __version__ 1230s E ModuleNotFoundError: No module named 'dolfin.cpp' 1230s 1230s /usr/lib/python3/dist-packages/pusimp/utils.py:32: AssertionError 1230s _ test_dolfin_import_errors_with_local_packages[dependencies_import_name1-dependencies_pypi_name1-dependencies_extra_error_message1] _ 1230s 1230s dependencies_import_name = ['ufl'], dependencies_pypi_name = ['fenics-ufl'] 1230s dependencies_extra_error_message = ['legacy dolfin codes must now import ufl_legacy instead of ufl'] 1230s 1230s @pytest.mark.skipif(not has_internet, reason="Requires downloading from pypi.org") 1230s @pytest.mark.parametrize("dependencies_import_name,dependencies_pypi_name,dependencies_extra_error_message", [ 1230s (["ufl_legacy"], ["fenics-ufl-legacy"], []), 1230s (["ufl"], ["fenics-ufl"], [UFL_LEGACY_WARNING]), 1230s (["FIAT", "ufl_legacy"], ["fenics-fiat", "fenics-ufl-legacy"], []), 1230s (["ufl", "ufl_legacy"], ["fenics-ufl", "fenics-ufl-legacy"], [UFL_LEGACY_WARNING]) 1230s ]) 1230s def test_dolfin_import_errors_with_local_packages( 1230s dependencies_import_name: typing.List[str], dependencies_pypi_name: typing.List[str], 1230s dependencies_extra_error_message: typing.List[str] 1230s ) -> None: 1230s """Test that dolfin fails to import with extra local packages.""" 1230s > assert_package_import_errors_with_local_packages( 1230s "dolfin", dependencies_import_name, dependencies_pypi_name, dependencies_extra_error_message, 1230s pip_install_call, pip_uninstall_call 1230s ) 1230s 1230s python/test/debian-only/test_pusimp.py:64: 1230s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1230s /usr/lib/python3/dist-packages/pusimp/utils.py:238: in assert_package_import_errors_with_local_packages 1230s assert_has_package(virtual_env.executable, package) 1230s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1230s 1230s executable = '/tmp/tmpsl25e3yg/venv/bin/python3', package = 'dolfin' 1230s 1230s def assert_has_package(executable: str, package: str) -> None: 1230s """Assert that a package is installed. 1230s 1230s Note that it is not safe to simply import the package in the current pytest environment, 1230s since the environment itself might change from one test to the other, but python packages 1230s can be imported only once and not unloaded. 1230s """ 1230s run_import = subprocess.run(f"{executable} -c 'import {package}'", shell=True, capture_output=True) 1230s > assert run_import.returncode == 0, ( 1230s f"Importing {package} was not successful.\n" 1230s f"stdout contains {run_import.stdout.decode().strip()}\n" 1230s f"stderr contains {run_import.stderr.decode().strip()}" 1230s ) 1230s E AssertionError: Importing dolfin was not successful. 1230s E stdout contains 1230s E stderr contains Traceback (most recent call last): 1230s E File "", line 1, in 1230s E import dolfin 1230s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 60, in 1230s E from .cpp import __version__ 1230s E ModuleNotFoundError: No module named 'dolfin.cpp' 1230s 1230s /usr/lib/python3/dist-packages/pusimp/utils.py:32: AssertionError 1230s _ test_dolfin_import_errors_with_local_packages[dependencies_import_name2-dependencies_pypi_name2-dependencies_extra_error_message2] _ 1230s 1230s dependencies_import_name = ['FIAT', 'ufl_legacy'] 1230s dependencies_pypi_name = ['fenics-fiat', 'fenics-ufl-legacy'] 1230s dependencies_extra_error_message = [] 1230s 1230s @pytest.mark.skipif(not has_internet, reason="Requires downloading from pypi.org") 1230s @pytest.mark.parametrize("dependencies_import_name,dependencies_pypi_name,dependencies_extra_error_message", [ 1230s (["ufl_legacy"], ["fenics-ufl-legacy"], []), 1230s (["ufl"], ["fenics-ufl"], [UFL_LEGACY_WARNING]), 1230s (["FIAT", "ufl_legacy"], ["fenics-fiat", "fenics-ufl-legacy"], []), 1230s (["ufl", "ufl_legacy"], ["fenics-ufl", "fenics-ufl-legacy"], [UFL_LEGACY_WARNING]) 1230s ]) 1230s def test_dolfin_import_errors_with_local_packages( 1230s dependencies_import_name: typing.List[str], dependencies_pypi_name: typing.List[str], 1230s dependencies_extra_error_message: typing.List[str] 1230s ) -> None: 1230s """Test that dolfin fails to import with extra local packages.""" 1230s > assert_package_import_errors_with_local_packages( 1230s "dolfin", dependencies_import_name, dependencies_pypi_name, dependencies_extra_error_message, 1230s pip_install_call, pip_uninstall_call 1230s ) 1230s 1230s python/test/debian-only/test_pusimp.py:64: 1230s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1230s /usr/lib/python3/dist-packages/pusimp/utils.py:238: in assert_package_import_errors_with_local_packages 1230s assert_has_package(virtual_env.executable, package) 1230s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1230s 1230s executable = '/tmp/tmpowjz12xx/venv/bin/python3', package = 'dolfin' 1230s 1230s def assert_has_package(executable: str, package: str) -> None: 1230s """Assert that a package is installed. 1230s 1230s Note that it is not safe to simply import the package in the current pytest environment, 1230s since the environment itself might change from one test to the other, but python packages 1230s can be imported only once and not unloaded. 1230s """ 1230s run_import = subprocess.run(f"{executable} -c 'import {package}'", shell=True, capture_output=True) 1230s > assert run_import.returncode == 0, ( 1230s f"Importing {package} was not successful.\n" 1230s f"stdout contains {run_import.stdout.decode().strip()}\n" 1230s f"stderr contains {run_import.stderr.decode().strip()}" 1230s ) 1230s E AssertionError: Importing dolfin was not successful. 1230s E stdout contains 1230s E stderr contains Traceback (most recent call last): 1230s E File "", line 1, in 1230s E import dolfin 1230s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 60, in 1230s E from .cpp import __version__ 1230s E ModuleNotFoundError: No module named 'dolfin.cpp' 1230s 1230s /usr/lib/python3/dist-packages/pusimp/utils.py:32: AssertionError 1230s _ test_dolfin_import_errors_with_local_packages[dependencies_import_name3-dependencies_pypi_name3-dependencies_extra_error_message3] _ 1230s 1230s dependencies_import_name = ['ufl', 'ufl_legacy'] 1230s dependencies_pypi_name = ['fenics-ufl', 'fenics-ufl-legacy'] 1230s dependencies_extra_error_message = ['legacy dolfin codes must now import ufl_legacy instead of ufl'] 1230s 1230s @pytest.mark.skipif(not has_internet, reason="Requires downloading from pypi.org") 1230s @pytest.mark.parametrize("dependencies_import_name,dependencies_pypi_name,dependencies_extra_error_message", [ 1230s (["ufl_legacy"], ["fenics-ufl-legacy"], []), 1230s (["ufl"], ["fenics-ufl"], [UFL_LEGACY_WARNING]), 1230s (["FIAT", "ufl_legacy"], ["fenics-fiat", "fenics-ufl-legacy"], []), 1230s (["ufl", "ufl_legacy"], ["fenics-ufl", "fenics-ufl-legacy"], [UFL_LEGACY_WARNING]) 1230s ]) 1230s def test_dolfin_import_errors_with_local_packages( 1230s dependencies_import_name: typing.List[str], dependencies_pypi_name: typing.List[str], 1230s dependencies_extra_error_message: typing.List[str] 1230s ) -> None: 1230s """Test that dolfin fails to import with extra local packages.""" 1230s > assert_package_import_errors_with_local_packages( 1230s "dolfin", dependencies_import_name, dependencies_pypi_name, dependencies_extra_error_message, 1230s pip_install_call, pip_uninstall_call 1230s ) 1230s 1230s python/test/debian-only/test_pusimp.py:64: 1230s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1230s /usr/lib/python3/dist-packages/pusimp/utils.py:238: in assert_package_import_errors_with_local_packages 1230s assert_has_package(virtual_env.executable, package) 1230s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1230s 1230s executable = '/tmp/tmpjowomn2z/venv/bin/python3', package = 'dolfin' 1230s 1230s def assert_has_package(executable: str, package: str) -> None: 1230s """Assert that a package is installed. 1230s 1230s Note that it is not safe to simply import the package in the current pytest environment, 1230s since the environment itself might change from one test to the other, but python packages 1230s can be imported only once and not unloaded. 1230s """ 1230s run_import = subprocess.run(f"{executable} -c 'import {package}'", shell=True, capture_output=True) 1230s > assert run_import.returncode == 0, ( 1230s f"Importing {package} was not successful.\n" 1230s f"stdout contains {run_import.stdout.decode().strip()}\n" 1230s f"stderr contains {run_import.stderr.decode().strip()}" 1230s ) 1230s E AssertionError: Importing dolfin was not successful. 1230s E stdout contains 1230s E stderr contains Traceback (most recent call last): 1230s E File "", line 1, in 1230s E import dolfin 1230s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 60, in 1230s E from .cpp import __version__ 1230s E ModuleNotFoundError: No module named 'dolfin.cpp' 1230s 1230s /usr/lib/python3/dist-packages/pusimp/utils.py:32: AssertionError 1230s _ test_dolfin_import_success_with_allowed_local_packages[dependencies_import_name0-dependencies_pypi_name0] _ 1230s 1230s dependencies_import_name = ['ufl_legacy'] 1230s dependencies_pypi_name = ['fenics-ufl-legacy'] 1230s 1230s @pytest.mark.skipif(not has_internet, reason="Requires downloading from pypi.org") 1230s @pytest.mark.parametrize("dependencies_import_name,dependencies_pypi_name", [ 1230s (["ufl_legacy"], ["fenics-ufl-legacy"]), 1230s (["ufl"], ["fenics-ufl"]) 1230s ]) 1230s def test_dolfin_import_success_with_allowed_local_packages( 1230s dependencies_import_name: typing.List[str], dependencies_pypi_name: typing.List[str] 1230s ) -> None: 1230s """Test that dolfin imports correctly even with extra local packages when asked to allow user-site imports.""" 1230s > assert_package_import_success_with_allowed_local_packages( 1230s "dolfin", "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", 1230s dependencies_import_name, dependencies_pypi_name, pip_install_call 1230s ) 1230s 1230s python/test/debian-only/test_pusimp.py:79: 1230s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1230s /usr/lib/python3/dist-packages/pusimp/utils.py:267: in assert_package_import_success_with_allowed_local_packages 1230s assert_package_location(virtual_env.executable, package, package_path) 1230s /usr/lib/python3/dist-packages/pusimp/utils.py:47: in assert_package_location 1230s assert_has_package(executable, package) 1230s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1230s 1230s executable = '/tmp/tmpy38c28i_/venv/bin/python3', package = 'dolfin' 1230s 1230s def assert_has_package(executable: str, package: str) -> None: 1230s """Assert that a package is installed. 1230s 1230s Note that it is not safe to simply import the package in the current pytest environment, 1230s since the environment itself might change from one test to the other, but python packages 1230s can be imported only once and not unloaded. 1230s """ 1230s run_import = subprocess.run(f"{executable} -c 'import {package}'", shell=True, capture_output=True) 1230s > assert run_import.returncode == 0, ( 1230s f"Importing {package} was not successful.\n" 1230s f"stdout contains {run_import.stdout.decode().strip()}\n" 1230s f"stderr contains {run_import.stderr.decode().strip()}" 1230s ) 1230s E AssertionError: Importing dolfin was not successful. 1230s E stdout contains 1230s E stderr contains Traceback (most recent call last): 1230s E File "", line 1, in 1230s E import dolfin 1230s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 60, in 1230s E from .cpp import __version__ 1230s E ModuleNotFoundError: No module named 'dolfin.cpp' 1230s 1230s /usr/lib/python3/dist-packages/pusimp/utils.py:32: AssertionError 1230s _ test_dolfin_import_success_with_allowed_local_packages[dependencies_import_name1-dependencies_pypi_name1] _ 1230s 1230s dependencies_import_name = ['ufl'], dependencies_pypi_name = ['fenics-ufl'] 1230s 1230s @pytest.mark.skipif(not has_internet, reason="Requires downloading from pypi.org") 1230s @pytest.mark.parametrize("dependencies_import_name,dependencies_pypi_name", [ 1230s (["ufl_legacy"], ["fenics-ufl-legacy"]), 1230s (["ufl"], ["fenics-ufl"]) 1230s ]) 1230s def test_dolfin_import_success_with_allowed_local_packages( 1230s dependencies_import_name: typing.List[str], dependencies_pypi_name: typing.List[str] 1230s ) -> None: 1230s """Test that dolfin imports correctly even with extra local packages when asked to allow user-site imports.""" 1230s > assert_package_import_success_with_allowed_local_packages( 1230s "dolfin", "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", 1230s dependencies_import_name, dependencies_pypi_name, pip_install_call 1230s ) 1230s 1230s python/test/debian-only/test_pusimp.py:79: 1230s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1230s /usr/lib/python3/dist-packages/pusimp/utils.py:267: in assert_package_import_success_with_allowed_local_packages 1230s assert_package_location(virtual_env.executable, package, package_path) 1230s /usr/lib/python3/dist-packages/pusimp/utils.py:47: in assert_package_location 1230s assert_has_package(executable, package) 1230s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1230s 1230s executable = '/tmp/tmp4k2k89uf/venv/bin/python3', package = 'dolfin' 1230s 1230s def assert_has_package(executable: str, package: str) -> None: 1230s """Assert that a package is installed. 1230s 1230s Note that it is not safe to simply import the package in the current pytest environment, 1230s since the environment itself might change from one test to the other, but python packages 1230s can be imported only once and not unloaded. 1230s """ 1230s run_import = subprocess.run(f"{executable} -c 'import {package}'", shell=True, capture_output=True) 1230s > assert run_import.returncode == 0, ( 1230s f"Importing {package} was not successful.\n" 1230s f"stdout contains {run_import.stdout.decode().strip()}\n" 1230s f"stderr contains {run_import.stderr.decode().strip()}" 1230s ) 1230s E AssertionError: Importing dolfin was not successful. 1230s E stdout contains 1230s E stderr contains Traceback (most recent call last): 1230s E File "", line 1, in 1230s E import dolfin 1230s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 60, in 1230s E from .cpp import __version__ 1230s E ModuleNotFoundError: No module named 'dolfin.cpp' 1230s 1230s /usr/lib/python3/dist-packages/pusimp/utils.py:32: AssertionError 1230s _ test_dolfin_import_success_with_broken_optional_packages[dependencies_import_name0] _ 1230s 1230s dependencies_import_name = ['ufl'] 1230s 1230s @pytest.mark.parametrize("dependencies_import_name", [ 1230s ["ufl"] 1230s ]) 1230s def test_dolfin_import_success_with_broken_optional_packages(dependencies_import_name: typing.List[str]) -> None: 1230s """Test that dolfin fails to import imports correctly when optional packages are broken.""" 1230s > assert_package_import_success_with_broken_optional_packages( 1230s "dolfin", "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", dependencies_import_name, [True] 1230s ) 1230s 1230s python/test/debian-only/test_pusimp.py:99: 1230s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1230s /usr/lib/python3/dist-packages/pusimp/utils.py:311: in assert_package_import_success_with_broken_optional_packages 1230s assert_package_location(virtual_env.executable, package, package_path) 1230s /usr/lib/python3/dist-packages/pusimp/utils.py:47: in assert_package_location 1230s assert_has_package(executable, package) 1230s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1230s 1230s executable = '/tmp/tmpueju61mh/venv/bin/python3', package = 'dolfin' 1230s 1230s def assert_has_package(executable: str, package: str) -> None: 1230s """Assert that a package is installed. 1230s 1230s Note that it is not safe to simply import the package in the current pytest environment, 1230s since the environment itself might change from one test to the other, but python packages 1230s can be imported only once and not unloaded. 1230s """ 1230s run_import = subprocess.run(f"{executable} -c 'import {package}'", shell=True, capture_output=True) 1230s > assert run_import.returncode == 0, ( 1230s f"Importing {package} was not successful.\n" 1230s f"stdout contains {run_import.stdout.decode().strip()}\n" 1230s f"stderr contains {run_import.stderr.decode().strip()}" 1230s ) 1230s E AssertionError: Importing dolfin was not successful. 1230s E stdout contains 1230s E stderr contains Traceback (most recent call last): 1230s E File "", line 1, in 1230s E import dolfin 1230s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 1230s E pusimp.prevent_user_site_imports( 1230s E ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1230s E "dolfin", "apt", "https://fenicsproject.discourse.group/", 1230s E ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1230s E ...<8 lines>... 1230s E pip_uninstall_call 1230s E ^^^^^^^^^^^^^^^^^^ 1230s E ) 1230s E ^ 1230s E File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 1230s E raise ImportError(import_error) 1230s E ImportError: pusimp has detected the following problems with dolfin dependencies: 1230s E 1) Broken dependencies: 1230s E * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 1230s E its source directory; please exit the numpy source tree, and relaunch 1230s E your python interpreter from there.'. 1230s E * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 1230s E its source directory; please exit the numpy source tree, and relaunch 1230s E your python interpreter from there.'. 1230s E * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 1230s E its source directory; please exit the numpy source tree, and relaunch 1230s E your python interpreter from there.'. 1230s E * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 1230s E its source directory; please exit the numpy source tree, and relaunch 1230s E your python interpreter from there.'. 1230s E 1230s E pusimp suggests to apply all of the following fixes: 1230s E 1) To fix broken dependencies: 1230s E * run '/tmp/tmpueju61mh/venv/bin/python3 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/tmp/tmpueju61mh/venv/bin/python3 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 1230s E * run '/tmp/tmpueju61mh/venv/bin/python3 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/tmp/tmpueju61mh/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 1230s E * run '/tmp/tmpueju61mh/venv/bin/python3 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/tmp/tmpueju61mh/venv/bin/python3 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 1230s E * run '/tmp/tmpueju61mh/venv/bin/python3 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/tmp/tmpueju61mh/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 1230s E 1230s E You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 1230s E If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 1230s 1230s /usr/lib/python3/dist-packages/pusimp/utils.py:32: AssertionError 1230s =========================== short test summary info ============================ 1230s FAILED python/test/debian-only/test_pusimp.py::test_dolfin_import_success_without_local_packages - AssertionError: Importing dolfin was not successful. 1230s stdout contains 1230s stderr contains Traceback (most recent call last): 1230s File "", line 1, in 1230s import dolfin 1230s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 1230s pusimp.prevent_user_site_imports( 1230s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1230s "dolfin", "apt", "https://fenicsproject.discourse.group/", 1230s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1230s ...<8 lines>... 1230s pip_uninstall_call 1230s ^^^^^^^^^^^^^^^^^^ 1230s ) 1230s ^ 1230s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 1230s raise ImportError(import_error) 1230s ImportError: pusimp has detected the following problems with dolfin dependencies: 1230s 1) Broken dependencies: 1230s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 1230s its source directory; please exit the numpy source tree, and relaunch 1230s your python interpreter from there.'. 1230s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 1230s its source directory; please exit the numpy source tree, and relaunch 1230s your python interpreter from there.'. 1230s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 1230s its source directory; please exit the numpy source tree, and relaunch 1230s your python interpreter from there.'. 1230s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 1230s its source directory; please exit the numpy source tree, and relaunch 1230s your python interpreter from there.'. 1230s 1230s pusimp suggests to apply all of the following fixes: 1230s 1) To fix broken dependencies: 1230s * run '/usr/bin/python3.13 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 1230s * run '/usr/bin/python3.13 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 1230s * run '/usr/bin/python3.13 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 1230s * run '/usr/bin/python3.13 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/usr/bin/python3.13 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 1230s 1230s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 1230s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 1230s FAILED python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_local_packages[dependencies_import_name0-dependencies_pypi_name0-dependencies_extra_error_message0] - AssertionError: Importing dolfin was not successful. 1230s stdout contains 1230s stderr contains Traceback (most recent call last): 1230s File "", line 1, in 1230s import dolfin 1230s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 60, in 1230s from .cpp import __version__ 1230s ModuleNotFoundError: No module named 'dolfin.cpp' 1230s FAILED python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_local_packages[dependencies_import_name1-dependencies_pypi_name1-dependencies_extra_error_message1] - AssertionError: Importing dolfin was not successful. 1230s stdout contains 1230s stderr contains Traceback (most recent call last): 1230s File "", line 1, in 1230s import dolfin 1230s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 60, in 1230s from .cpp import __version__ 1230s ModuleNotFoundError: No module named 'dolfin.cpp' 1230s FAILED python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_local_packages[dependencies_import_name2-dependencies_pypi_name2-dependencies_extra_error_message2] - AssertionError: Importing dolfin was not successful. 1230s stdout contains 1230s stderr contains Traceback (most recent call last): 1230s File "", line 1, in 1230s import dolfin 1230s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 60, in 1230s from .cpp import __version__ 1230s ModuleNotFoundError: No module named 'dolfin.cpp' 1230s FAILED python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_local_packages[dependencies_import_name3-dependencies_pypi_name3-dependencies_extra_error_message3] - AssertionError: Importing dolfin was not successful. 1230s stdout contains 1230s stderr contains Traceback (most recent call last): 1230s File "", line 1, in 1230s import dolfin 1230s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 60, in 1230s from .cpp import __version__ 1230s ModuleNotFoundError: No module named 'dolfin.cpp' 1230s FAILED python/test/debian-only/test_pusimp.py::test_dolfin_import_success_with_allowed_local_packages[dependencies_import_name0-dependencies_pypi_name0] - AssertionError: Importing dolfin was not successful. 1230s stdout contains 1230s stderr contains Traceback (most recent call last): 1230s File "", line 1, in 1230s import dolfin 1230s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 60, in 1230s from .cpp import __version__ 1230s ModuleNotFoundError: No module named 'dolfin.cpp' 1230s FAILED python/test/debian-only/test_pusimp.py::test_dolfin_import_success_with_allowed_local_packages[dependencies_import_name1-dependencies_pypi_name1] - AssertionError: Importing dolfin was not successful. 1230s stdout contains 1230s stderr contains Traceback (most recent call last): 1230s File "", line 1, in 1230s import dolfin 1230s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 60, in 1230s from .cpp import __version__ 1230s ModuleNotFoundError: No module named 'dolfin.cpp' 1230s FAILED python/test/debian-only/test_pusimp.py::test_dolfin_import_success_with_broken_optional_packages[dependencies_import_name0] - AssertionError: Importing dolfin was not successful. 1230s stdout contains 1230s stderr contains Traceback (most recent call last): 1230s File "", line 1, in 1230s import dolfin 1230s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 1230s pusimp.prevent_user_site_imports( 1230s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1230s "dolfin", "apt", "https://fenicsproject.discourse.group/", 1230s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1230s ...<8 lines>... 1230s pip_uninstall_call 1230s ^^^^^^^^^^^^^^^^^^ 1230s ) 1230s ^ 1230s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 1230s raise ImportError(import_error) 1230s ImportError: pusimp has detected the following problems with dolfin dependencies: 1230s 1) Broken dependencies: 1230s * dijitso is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 1230s its source directory; please exit the numpy source tree, and relaunch 1230s your python interpreter from there.'. 1230s * ffc is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 1230s its source directory; please exit the numpy source tree, and relaunch 1230s your python interpreter from there.'. 1230s * FIAT is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 1230s its source directory; please exit the numpy source tree, and relaunch 1230s your python interpreter from there.'. 1230s * ufl_legacy is broken. Error on import was 'Error importing numpy: you should not try to import numpy from 1230s its source directory; please exit the numpy source tree, and relaunch 1230s your python interpreter from there.'. 1230s 1230s pusimp suggests to apply all of the following fixes: 1230s 1) To fix broken dependencies: 1230s * run '/tmp/tmpueju61mh/venv/bin/python3 -m pip show fenics-dijitso' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/tmp/tmpueju61mh/venv/bin/python3 -m pip uninstall --break-system-packages fenics-dijitso' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 1230s * run '/tmp/tmpueju61mh/venv/bin/python3 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/tmp/tmpueju61mh/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 1230s * run '/tmp/tmpueju61mh/venv/bin/python3 -m pip show fenics-fiat' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/tmp/tmpueju61mh/venv/bin/python3 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 1230s * run '/tmp/tmpueju61mh/venv/bin/python3 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/tmp/tmpueju61mh/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 1230s 1230s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 1230s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 1230s =================== 8 failed, 2 passed in 228.47s (0:03:48) ==================== 1230s === python 3.12 pusimp test === 1230s ============================= test session starts ============================== 1230s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.12 1230s cachedir: .pytest_cache 1230s rootdir: /tmp/autopkgtest.ShOyTP/build.fwM/src/python 1230s plugins: typeguard-4.4.1 1231s collecting ... collected 10 items 1231s 1233s python/test/debian-only/test_pusimp.py::test_dolfin_import_success_without_local_packages PASSED 1246s python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_local_packages[dependencies_import_name0-dependencies_pypi_name0-dependencies_extra_error_message0] Package dolfin did fail to import with error: 1246s Importing dolfin was not successful. 1246s stdout contains 1246s stderr contains Traceback (most recent call last): 1246s File "", line 1, in 1246s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 1246s pusimp.prevent_user_site_imports( 1246s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 1246s raise ImportError(import_error) 1246s ImportError: pusimp has detected the following problems with dolfin dependencies: 1246s 1) Dependencies imported from a local path rather than from the path provided by apt: 1246s * ufl_legacy was imported from a local path: expected in /usr/lib/python3/dist-packages/ufl_legacy/__init__.py, but imported from /tmp/tmpfg6di8q8/venv/lib/python3.12/site-packages/ufl_legacy/__init__.py. 1246s 1246s pusimp suggests to apply all of the following fixes: 1246s 1) To uninstall local dependencies: 1246s * run '/tmp/tmpfg6di8q8/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, and verify that you are prompted to confirm removal of files in /tmp/tmpfg6di8q8/venv/lib/python3.12/site-packages/ufl_legacy. 1246s 1246s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 1246s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 1246s PASSED 1256s python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_local_packages[dependencies_import_name1-dependencies_pypi_name1-dependencies_extra_error_message1] Package dolfin did fail to import with error: 1256s Importing dolfin was not successful. 1256s stdout contains 1256s stderr contains Traceback (most recent call last): 1256s File "", line 1, in 1256s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 1256s pusimp.prevent_user_site_imports( 1256s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 1256s raise ImportError(import_error) 1256s ImportError: pusimp has detected the following problems with dolfin dependencies: 1256s 1) Dependencies imported from a local path rather than from the path provided by apt: 1256s * ufl was imported from a local path: expected in /usr/lib/python3/dist-packages/ufl/__init__.py, but imported from /tmp/tmpgqkemn23/venv/lib/python3.12/site-packages/ufl/__init__.py. 1256s 1256s pusimp suggests to apply all of the following fixes: 1256s 1) To uninstall local dependencies: 1256s * run '/tmp/tmpgqkemn23/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ufl' in a terminal, and verify that you are prompted to confirm removal of files in /tmp/tmpgqkemn23/venv/lib/python3.12/site-packages/ufl. Be aware that legacy dolfin codes must now import ufl_legacy instead of ufl, see https://fenicsproject.discourse.group/t/announcement-ufl-legacy-and-legacy-dolfin/11583 . 1256s 1256s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 1256s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 1256s PASSED 1281s python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_local_packages[dependencies_import_name2-dependencies_pypi_name2-dependencies_extra_error_message2] Package dolfin did fail to import with error: 1281s Importing dolfin was not successful. 1281s stdout contains 1281s stderr contains Traceback (most recent call last): 1281s File "", line 1, in 1281s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 1281s pusimp.prevent_user_site_imports( 1281s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 1281s raise ImportError(import_error) 1281s ImportError: pusimp has detected the following problems with dolfin dependencies: 1281s 1) Dependencies imported from a local path rather than from the path provided by apt: 1281s * FIAT was imported from a local path: expected in /usr/lib/python3/dist-packages/FIAT/__init__.py, but imported from /tmp/tmpit_nfmzb/venv/lib/python3.12/site-packages/FIAT/__init__.py. 1281s * ufl_legacy was imported from a local path: expected in /usr/lib/python3/dist-packages/ufl_legacy/__init__.py, but imported from /tmp/tmpit_nfmzb/venv/lib/python3.12/site-packages/ufl_legacy/__init__.py. 1281s 1281s pusimp suggests to apply all of the following fixes: 1281s 1) To uninstall local dependencies: 1281s * run '/tmp/tmpit_nfmzb/venv/bin/python3 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, and verify that you are prompted to confirm removal of files in /tmp/tmpit_nfmzb/venv/lib/python3.12/site-packages/FIAT. 1281s * run '/tmp/tmpit_nfmzb/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, and verify that you are prompted to confirm removal of files in /tmp/tmpit_nfmzb/venv/lib/python3.12/site-packages/ufl_legacy. 1281s 1281s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 1281s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 1281s PASSED 1297s python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_local_packages[dependencies_import_name3-dependencies_pypi_name3-dependencies_extra_error_message3] Package dolfin did fail to import with error: 1297s Importing dolfin was not successful. 1297s stdout contains 1297s stderr contains Traceback (most recent call last): 1297s File "", line 1, in 1297s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 1297s pusimp.prevent_user_site_imports( 1297s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 1297s raise ImportError(import_error) 1297s ImportError: pusimp has detected the following problems with dolfin dependencies: 1297s 1) Dependencies imported from a local path rather than from the path provided by apt: 1297s * ufl_legacy was imported from a local path: expected in /usr/lib/python3/dist-packages/ufl_legacy/__init__.py, but imported from /tmp/tmph8jhyc32/venv/lib/python3.12/site-packages/ufl_legacy/__init__.py. 1297s * ufl was imported from a local path: expected in /usr/lib/python3/dist-packages/ufl/__init__.py, but imported from /tmp/tmph8jhyc32/venv/lib/python3.12/site-packages/ufl/__init__.py. 1297s 1297s pusimp suggests to apply all of the following fixes: 1297s 1) To uninstall local dependencies: 1297s * run '/tmp/tmph8jhyc32/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, and verify that you are prompted to confirm removal of files in /tmp/tmph8jhyc32/venv/lib/python3.12/site-packages/ufl_legacy. 1297s * run '/tmp/tmph8jhyc32/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ufl' in a terminal, and verify that you are prompted to confirm removal of files in /tmp/tmph8jhyc32/venv/lib/python3.12/site-packages/ufl. Be aware that legacy dolfin codes must now import ufl_legacy instead of ufl, see https://fenicsproject.discourse.group/t/announcement-ufl-legacy-and-legacy-dolfin/11583 . 1297s 1297s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 1297s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 1297s PASSED 1308s python/test/debian-only/test_pusimp.py::test_dolfin_import_success_with_allowed_local_packages[dependencies_import_name0-dependencies_pypi_name0] PASSED 1319s python/test/debian-only/test_pusimp.py::test_dolfin_import_success_with_allowed_local_packages[dependencies_import_name1-dependencies_pypi_name1] PASSED 1323s python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_broken_non_optional_packages[dependencies_import_name0] Package dolfin did fail to import with error: 1323s Importing dolfin was not successful. 1323s stdout contains 1323s stderr contains Traceback (most recent call last): 1323s File "", line 1, in 1323s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 1323s pusimp.prevent_user_site_imports( 1323s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 1323s raise ImportError(import_error) 1323s ImportError: pusimp has detected the following problems with dolfin dependencies: 1323s 1) Broken dependencies: 1323s * ffc is broken. Error on import was 'ufl_legacy was purposely broken.'. 1323s * ufl_legacy is broken. Error on import was 'ufl_legacy was purposely broken.'. 1323s 1323s pusimp suggests to apply all of the following fixes: 1323s 1) To fix broken dependencies: 1323s * run '/tmp/tmp7kzyt_f9/venv/bin/python3 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/tmp/tmp7kzyt_f9/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 1323s * run '/tmp/tmp7kzyt_f9/venv/bin/python3 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/tmp/tmp7kzyt_f9/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 1323s 1323s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 1323s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 1323s PASSED 1327s python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_broken_non_optional_packages[dependencies_import_name1] Package dolfin did fail to import with error: 1327s Importing dolfin was not successful. 1327s stdout contains 1327s stderr contains Traceback (most recent call last): 1327s File "", line 1, in 1327s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 1327s pusimp.prevent_user_site_imports( 1327s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 1327s raise ImportError(import_error) 1327s ImportError: pusimp has detected the following problems with dolfin dependencies: 1327s 1) Broken dependencies: 1327s * ffc is broken. Error on import was 'ffc was purposely broken.'. 1327s 1327s pusimp suggests to apply all of the following fixes: 1327s 1) To fix broken dependencies: 1327s * run '/tmp/tmp7dmhlv73/venv/bin/python3 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/tmp/tmp7dmhlv73/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 1327s 1327s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 1327s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 1327s PASSED 1333s python/test/debian-only/test_pusimp.py::test_dolfin_import_success_with_broken_optional_packages[dependencies_import_name0] PASSED 1333s 1333s ======================== 10 passed in 102.78s (0:01:42) ======================== 1333s autopkgtest [09:27:51]: test test-dolfin-python-pusimp: -----------------------] 1334s test-dolfin-python-pusimp PASS 1334s autopkgtest [09:27:52]: test test-dolfin-python-pusimp: - - - - - - - - - - results - - - - - - - - - - 1334s autopkgtest [09:27:52]: @@@@@@@@@@@@@@@@@@@@ summary 1334s test-dolfin-cpp PASS 1334s test-dolfin-python-unittest FAIL non-zero exit status 4 1334s test-dolfin-python-demo FAIL non-zero exit status 1 1334s test-dolfin-python-pusimp PASS 1348s virt: nova [W] Skipping flock in bos03-arm64 1348s virt: Creating nova instance adt-plucky-arm64-dolfin-20241113-090538-juju-7f2275-prod-proposed-migration-environment-2-d3b8b4f9-a6d5-4cbc-83ee-0abae706bb39 from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)... 1348s virt: nova [W] Skipping flock in bos03-arm64 1348s virt: Creating nova instance adt-plucky-arm64-dolfin-20241113-090538-juju-7f2275-prod-proposed-migration-environment-2-d3b8b4f9-a6d5-4cbc-83ee-0abae706bb39 from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)...