0s autopkgtest [08:57:39]: starting date and time: 2024-11-13 08:57:39+0000 0s autopkgtest [08:57:39]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time 0s autopkgtest [08:57:39]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.alq9l6xa/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade custodian --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-39.secgroup --name adt-plucky-arm64-custodian-20241113-085739-juju-7f2275-prod-proposed-migration-environment-2-60546143-303f-4d75-be05-ca5cc9d86a8b --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 81s autopkgtest [08:59:00]: testbed dpkg architecture: arm64 82s autopkgtest [08:59:01]: testbed apt version: 2.9.8 82s autopkgtest [08:59:01]: @@@@@@@@@@@@@@@@@@@@ test bed setup 83s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 83s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 83s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 83s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 83s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 83s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB] 83s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 83s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB] 83s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB] 83s Fetched 1793 kB in 1s (2112 kB/s) 83s Reading package lists... 86s Reading package lists... 86s Building dependency tree... 86s Reading state information... 87s Calculating upgrade... 88s The following NEW packages will be installed: 88s python3.13-gdbm 88s The following packages will be upgraded: 88s libpython3-stdlib python3 python3-gdbm python3-minimal 88s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 88s Need to get 101 kB of archives. 88s After this operation, 141 kB of additional disk space will be used. 88s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB] 88s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB] 88s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB] 88s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB] 88s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B] 89s Fetched 101 kB in 0s (297 kB/s) 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 89s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ... 89s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 89s Setting up python3-minimal (3.12.7-1) ... 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 89s Preparing to unpack .../python3_3.12.7-1_arm64.deb ... 89s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 89s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ... 89s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 89s Selecting previously unselected package python3.13-gdbm. 89s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ... 89s Unpacking python3.13-gdbm (3.13.0-2) ... 89s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ... 89s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 89s Setting up python3.13-gdbm (3.13.0-2) ... 89s Setting up libpython3-stdlib:arm64 (3.12.7-1) ... 89s Setting up python3 (3.12.7-1) ... 90s Setting up python3-gdbm:arm64 (3.12.7-1) ... 90s Processing triggers for man-db (2.12.1-3) ... 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 92s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 92s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 92s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 92s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 92s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 93s Reading package lists... 93s Reading package lists... 94s Building dependency tree... 94s Reading state information... 94s Calculating upgrade... 95s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 96s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 99s autopkgtest [08:59:18]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 99s autopkgtest [08:59:18]: @@@@@@@@@@@@@@@@@@@@ apt-source custodian 146s Get:1 http://ftpmaster.internal/ubuntu plucky/universe custodian 2024.6.24-1 (dsc) [2322 B] 146s Get:2 http://ftpmaster.internal/ubuntu plucky/universe custodian 2024.6.24-1 (tar) [46.6 MB] 146s Get:3 http://ftpmaster.internal/ubuntu plucky/universe custodian 2024.6.24-1 (diff) [8232 B] 146s gpgv: Signature made Mon Aug 5 23:32:47 2024 UTC 146s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 146s gpgv: Can't check signature: No public key 146s dpkg-source: warning: cannot verify inline signature for ./custodian_2024.6.24-1.dsc: no acceptable signature found 147s autopkgtest [09:00:06]: testing package custodian version 2024.6.24-1 148s autopkgtest [09:00:07]: build not needed 158s autopkgtest [09:00:17]: test test-custodian: preparing testbed 159s Reading package lists... 160s Building dependency tree... 160s Reading state information... 160s Starting pkgProblemResolver with broken count: 0 160s Starting 2 pkgProblemResolver with broken count: 0 160s Done 161s The following additional packages will be installed: 161s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libblas3 161s libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 161s libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery 161s libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 161s libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0 161s libsharpyuv0 libsymspg2 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 161s libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data 161s python3-all python3-annotated-types python3-appdirs python3-brotli 161s python3-bson python3-contourpy python3-custodian python3-cycler 161s python3-dateutil python3-decorator python3-dnspython python3-email-validator 161s python3-fastjsonschema python3-fonttools python3-fs python3-iniconfig 161s python3-joblib python3-jupyter-core python3-kiwisolver python3-latexcodec 161s python3-lxml python3-lz4 python3-matplotlib python3-monty python3-mpmath 161s python3-nbformat python3-networkx python3-numpy python3-packaging 161s python3-palettable python3-pandas python3-pandas-lib python3-pil 161s python3-pil.imagetk python3-platformdirs python3-plotly python3-pluggy 161s python3-psutil python3-pybtex python3-pydantic python3-pydantic-core 161s python3-pymatgen python3-pytest python3-ruamel.yaml python3-ruamel.yaml.clib 161s python3-scipy python3-six python3-spglib python3-sympy python3-tabulate 161s python3-tenacity python3-tk python3-tqdm python3-traitlets python3-tz 161s python3-ufolib2 python3-uncertainties python3-unicodedata2 python3.12-tk 161s python3.13 python3.13-minimal python3.13-tk tk8.6-blt2.5 unicode-data 161s x11-common 161s Suggested packages: 161s blt-demo libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 161s python-custodian-doc python-cycler-doc python3-trio python3-aioquic 161s python3-h2 python3-httpx python3-httpcore python-fastjsonschema-doc 161s python-joblib-doc python3-pip python-latexcodec-doc python-lxml-doc 161s cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 161s inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi 161s python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado 161s texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 161s python3-gdal python3-pydot python3-pygraphviz gcc gfortran python-numpy-doc 161s python3-dev python-pandas-doc python3-statsmodels python-pil-doc 161s python3-ipykernel python-pybtex-doc python-pymatgen-doc python3-mp-api 161s python-scipy-doc texlive-fonts-extra python-sympy-doc python-tenacity-doc 161s tix python3-tk-dbg python-traitlets-doc python-uncertainties-doc 161s python3.13-venv python3.13-doc binfmt-support 161s Recommended packages: 161s javascript-common python3-bson-ext python3-simplejson python3-bs4 161s python3-cssselect python3-html5lib python-monty-doc python3-torch 161s python3-bottleneck python3-numexpr python3-odf python3-openpyxl 161s python3-tables python3-olefile python3-openbabel python3-ase g++ 161s | c++-compiler isympy-common 161s The following NEW packages will be installed: 161s autopkgtest-satdep blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 161s fonts-lyx libblas3 libdeflate0 libfontconfig1 libgfortran5 libgomp1 161s libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 161s libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblerc4 161s libopenjp2-7 libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 161s libraqm0 libsharpyuv0 libsymspg2 libtcl8.6 libtiff6 libtk8.6 libwebp7 161s libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 161s python-matplotlib-data python3-all python3-annotated-types python3-appdirs 161s python3-brotli python3-bson python3-contourpy python3-custodian 161s python3-cycler python3-dateutil python3-decorator python3-dnspython 161s python3-email-validator python3-fastjsonschema python3-fonttools python3-fs 161s python3-iniconfig python3-joblib python3-jupyter-core python3-kiwisolver 161s python3-latexcodec python3-lxml python3-lz4 python3-matplotlib python3-monty 161s python3-mpmath python3-nbformat python3-networkx python3-numpy 161s python3-packaging python3-palettable python3-pandas python3-pandas-lib 161s python3-pil python3-pil.imagetk python3-platformdirs python3-plotly 161s python3-pluggy python3-psutil python3-pybtex python3-pydantic 161s python3-pydantic-core python3-pymatgen python3-pytest python3-ruamel.yaml 161s python3-ruamel.yaml.clib python3-scipy python3-six python3-spglib 161s python3-sympy python3-tabulate python3-tenacity python3-tk python3-tqdm 161s python3-traitlets python3-tz python3-ufolib2 python3-uncertainties 161s python3-unicodedata2 python3.12-tk python3.13 python3.13-minimal 161s python3.13-tk tk8.6-blt2.5 unicode-data x11-common 161s 0 upgraded, 106 newly installed, 0 to remove and 0 not upgraded. 161s Need to get 89.4 MB/89.4 MB of archives. 161s After this operation, 458 MB of additional disk space will be used. 161s Get:1 /tmp/autopkgtest.cZsUIE/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [732 B] 161s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB] 162s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.0-2 [2100 kB] 162s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [987 kB] 162s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 162s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 162s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB] 162s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB] 162s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 162s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 162s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 162s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 162s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.15-1 [774 kB] 162s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7build1 [618 kB] 162s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 blt arm64 2.5.3+dfsg-7build1 [4840 B] 162s Get:16 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lyx all 2.4.2.1-1 [171 kB] 162s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 162s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.22-1 [46.2 kB] 162s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB] 162s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB] 162s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 162s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.0.1-1 [487 kB] 162s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 162s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu2 [163 kB] 162s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 162s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 162s Get:27 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 162s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 162s Get:29 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 162s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 162s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu2 [154 kB] 162s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [2073 kB] 162s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 162s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libraqm0 arm64 0.10.1-1build1 [14.7 kB] 162s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [16.3 kB] 162s Get:36 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsymspg2 arm64 2.4.0-1ubuntu1 [209 kB] 162s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 162s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.4.0-0.1 [192 kB] 162s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 162s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [12.3 kB] 162s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpmux3 arm64 1.4.0-0.1 [25.1 kB] 162s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libxslt1.1 arm64 1.1.39-0exp1ubuntu1 [167 kB] 162s Get:43 http://ftpmaster.internal/ubuntu plucky/universe arm64 python-matplotlib-data all 3.8.3-3 [2928 kB] 162s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.0-2 [719 kB] 162s Get:45 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all arm64 3.12.7-1 [890 B] 162s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-annotated-types all 0.7.0-1 [19.4 kB] 162s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-appdirs all 1.4.4-4 [10.9 kB] 162s Get:48 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-brotli arm64 1.1.0-2build2 [340 kB] 162s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-bson all 4.7.3-2ubuntu1 [41.1 kB] 162s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB] 162s Get:51 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-contourpy arm64 1.3.0-2 [179 kB] 162s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-six all 1.16.0-7 [13.1 kB] 162s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-2 [80.3 kB] 162s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tz all 2024.1-2 [31.4 kB] 162s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas-lib arm64 2.2.3+dfsg-5 [4422 kB] 163s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas all 2.2.3+dfsg-5 [3112 kB] 163s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pydantic-core arm64 2.23.4-2 [1466 kB] 163s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dnspython all 2.6.1-1ubuntu1 [163 kB] 163s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-email-validator all 2.2.0-1 [28.5 kB] 163s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pydantic arm64 2.9.1-1 [290 kB] 163s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-tqdm all 4.67.0-1 [91.6 kB] 163s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-monty all 2024.7.29-1 [38.0 kB] 163s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-psutil arm64 5.9.8-2build2 [196 kB] 163s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ruamel.yaml.clib arm64 0.2.8+ds-2 [129 kB] 163s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ruamel.yaml all 0.18.6+ds-3 [126 kB] 163s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-custodian all 2024.6.24-1 [90.2 kB] 163s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-cycler all 0.12.1-1 [9716 B] 163s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 163s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fastjsonschema all 2.20.0-1 [20.1 kB] 163s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.13.1-5 [16.3 MB] 163s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 163s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mpmath all 1.3.0-1 [425 kB] 163s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sympy all 1.13.3-1 [4228 kB] 163s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fs all 2.4.16-4 [91.3 kB] 163s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-lxml arm64 5.3.0-1 [1205 kB] 163s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-lz4 arm64 4.0.2+dfsg-1build4 [26.7 kB] 163s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-unicodedata2 arm64 15.1.0+ds-1build1 [362 kB] 163s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 unicode-data all 15.1.0-1 [8878 kB] 164s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fonttools arm64 4.46.0-1build2 [1398 kB] 164s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 164s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-joblib all 1.3.2-5 [206 kB] 164s Get:82 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-platformdirs all 4.3.6-1 [16.8 kB] 164s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 164s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-jupyter-core all 5.7.2-4 [28.0 kB] 164s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-kiwisolver arm64 1.4.7-2 [50.4 kB] 164s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-latexcodec all 3.0.0-1 [16.6 kB] 164s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 libopenjp2-7 arm64 2.5.0-2ubuntu1 [182 kB] 164s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pil arm64 10.4.0-1ubuntu1 [456 kB] 164s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-tk arm64 3.12.7-3 [115 kB] 164s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-tk arm64 3.13.0-2 [105 kB] 164s Get:91 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-tk arm64 3.12.7-1 [9752 B] 164s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pil.imagetk arm64 10.4.0-1ubuntu1 [9504 B] 164s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.1-1 [41.4 kB] 164s Get:94 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-matplotlib arm64 3.8.3-3 [4515 kB] 164s Get:95 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-nbformat all 5.9.1-1 [41.2 kB] 164s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 164s Get:97 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-palettable all 3.3.3-1 [81.3 kB] 164s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tenacity all 8.5.0-0ubuntu1 [17.0 kB] 164s Get:99 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-plotly all 5.20.0+dfsg-1 [2766 kB] 164s Get:100 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 164s Get:101 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pybtex all 0.24.0-4 [70.0 kB] 164s Get:102 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-spglib arm64 2.4.0-1ubuntu1 [29.5 kB] 164s Get:103 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tabulate all 0.9.0-1 [45.3 kB] 165s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-uncertainties all 3.2.2-1 [51.4 kB] 165s Get:105 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pymatgen arm64 2024.6.10+dfsg1-8 [2499 kB] 165s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB] 165s Fetched 89.4 MB in 4s (21.8 MB/s) 165s Selecting previously unselected package libpython3.13-minimal:arm64. 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79931 files and directories currently installed.) 166s Preparing to unpack .../000-libpython3.13-minimal_3.13.0-2_arm64.deb ... 166s Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ... 166s Selecting previously unselected package python3.13-minimal. 166s Preparing to unpack .../001-python3.13-minimal_3.13.0-2_arm64.deb ... 166s Unpacking python3.13-minimal (3.13.0-2) ... 166s Selecting previously unselected package libtcl8.6:arm64. 166s Preparing to unpack .../002-libtcl8.6_8.6.15+dfsg-2_arm64.deb ... 166s Unpacking libtcl8.6:arm64 (8.6.15+dfsg-2) ... 166s Selecting previously unselected package fonts-dejavu-mono. 166s Preparing to unpack .../003-fonts-dejavu-mono_2.37-8_all.deb ... 166s Unpacking fonts-dejavu-mono (2.37-8) ... 166s Selecting previously unselected package fonts-dejavu-core. 166s Preparing to unpack .../004-fonts-dejavu-core_2.37-8_all.deb ... 166s Unpacking fonts-dejavu-core (2.37-8) ... 166s Selecting previously unselected package fontconfig-config. 166s Preparing to unpack .../005-fontconfig-config_2.15.0-1.1ubuntu2_arm64.deb ... 166s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 166s Selecting previously unselected package libfontconfig1:arm64. 166s Preparing to unpack .../006-libfontconfig1_2.15.0-1.1ubuntu2_arm64.deb ... 166s Unpacking libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... 166s Selecting previously unselected package libxrender1:arm64. 166s Preparing to unpack .../007-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 166s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 166s Selecting previously unselected package libxft2:arm64. 166s Preparing to unpack .../008-libxft2_2.3.6-1build1_arm64.deb ... 166s Unpacking libxft2:arm64 (2.3.6-1build1) ... 166s Selecting previously unselected package x11-common. 166s Preparing to unpack .../009-x11-common_1%3a7.7+23ubuntu3_all.deb ... 166s Unpacking x11-common (1:7.7+23ubuntu3) ... 166s Selecting previously unselected package libxss1:arm64. 166s Preparing to unpack .../010-libxss1_1%3a1.2.3-1build3_arm64.deb ... 166s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 166s Selecting previously unselected package libtk8.6:arm64. 166s Preparing to unpack .../011-libtk8.6_8.6.15-1_arm64.deb ... 166s Unpacking libtk8.6:arm64 (8.6.15-1) ... 166s Selecting previously unselected package tk8.6-blt2.5. 166s Preparing to unpack .../012-tk8.6-blt2.5_2.5.3+dfsg-7build1_arm64.deb ... 166s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 166s Selecting previously unselected package blt. 166s Preparing to unpack .../013-blt_2.5.3+dfsg-7build1_arm64.deb ... 166s Unpacking blt (2.5.3+dfsg-7build1) ... 166s Selecting previously unselected package fonts-lyx. 166s Preparing to unpack .../014-fonts-lyx_2.4.2.1-1_all.deb ... 166s Unpacking fonts-lyx (2.4.2.1-1) ... 166s Selecting previously unselected package libblas3:arm64. 166s Preparing to unpack .../015-libblas3_3.12.0-3build2_arm64.deb ... 166s Unpacking libblas3:arm64 (3.12.0-3build2) ... 166s Selecting previously unselected package libdeflate0:arm64. 166s Preparing to unpack .../016-libdeflate0_1.22-1_arm64.deb ... 166s Unpacking libdeflate0:arm64 (1.22-1) ... 166s Selecting previously unselected package libgfortran5:arm64. 166s Preparing to unpack .../017-libgfortran5_14.2.0-8ubuntu1_arm64.deb ... 166s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ... 167s Selecting previously unselected package libgomp1:arm64. 167s Preparing to unpack .../018-libgomp1_14.2.0-8ubuntu1_arm64.deb ... 167s Unpacking libgomp1:arm64 (14.2.0-8ubuntu1) ... 167s Selecting previously unselected package libgraphite2-3:arm64. 167s Preparing to unpack .../019-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 167s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 167s Selecting previously unselected package libharfbuzz0b:arm64. 167s Preparing to unpack .../020-libharfbuzz0b_10.0.1-1_arm64.deb ... 167s Unpacking libharfbuzz0b:arm64 (10.0.1-1) ... 167s Selecting previously unselected package libimagequant0:arm64. 167s Preparing to unpack .../021-libimagequant0_2.18.0-1build1_arm64.deb ... 167s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 167s Selecting previously unselected package libjpeg-turbo8:arm64. 167s Preparing to unpack .../022-libjpeg-turbo8_2.1.5-2ubuntu2_arm64.deb ... 167s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ... 167s Selecting previously unselected package libjpeg8:arm64. 167s Preparing to unpack .../023-libjpeg8_8c-2ubuntu11_arm64.deb ... 167s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 167s Selecting previously unselected package libjs-jquery. 167s Preparing to unpack .../024-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 167s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 167s Selecting previously unselected package libjs-jquery-ui. 167s Preparing to unpack .../025-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 167s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 167s Selecting previously unselected package liblapack3:arm64. 167s Preparing to unpack .../026-liblapack3_3.12.0-3build2_arm64.deb ... 167s Unpacking liblapack3:arm64 (3.12.0-3build2) ... 167s Selecting previously unselected package liblbfgsb0:arm64. 167s Preparing to unpack .../027-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 167s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 167s Selecting previously unselected package liblcms2-2:arm64. 167s Preparing to unpack .../028-liblcms2-2_2.16-2_arm64.deb ... 167s Unpacking liblcms2-2:arm64 (2.16-2) ... 167s Selecting previously unselected package liblerc4:arm64. 167s Preparing to unpack .../029-liblerc4_4.0.0+ds-4ubuntu2_arm64.deb ... 167s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu2) ... 167s Selecting previously unselected package libpython3.13-stdlib:arm64. 167s Preparing to unpack .../030-libpython3.13-stdlib_3.13.0-2_arm64.deb ... 167s Unpacking libpython3.13-stdlib:arm64 (3.13.0-2) ... 167s Selecting previously unselected package libqhull-r8.0:arm64. 167s Preparing to unpack .../031-libqhull-r8.0_2020.2-6build1_arm64.deb ... 167s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ... 167s Selecting previously unselected package libraqm0:arm64. 167s Preparing to unpack .../032-libraqm0_0.10.1-1build1_arm64.deb ... 167s Unpacking libraqm0:arm64 (0.10.1-1build1) ... 167s Selecting previously unselected package libsharpyuv0:arm64. 167s Preparing to unpack .../033-libsharpyuv0_1.4.0-0.1_arm64.deb ... 167s Unpacking libsharpyuv0:arm64 (1.4.0-0.1) ... 167s Selecting previously unselected package libsymspg2:arm64. 167s Preparing to unpack .../034-libsymspg2_2.4.0-1ubuntu1_arm64.deb ... 167s Unpacking libsymspg2:arm64 (2.4.0-1ubuntu1) ... 167s Selecting previously unselected package libjbig0:arm64. 167s Preparing to unpack .../035-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 167s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 167s Selecting previously unselected package libwebp7:arm64. 167s Preparing to unpack .../036-libwebp7_1.4.0-0.1_arm64.deb ... 167s Unpacking libwebp7:arm64 (1.4.0-0.1) ... 167s Selecting previously unselected package libtiff6:arm64. 167s Preparing to unpack .../037-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 167s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 167s Selecting previously unselected package libwebpdemux2:arm64. 167s Preparing to unpack .../038-libwebpdemux2_1.4.0-0.1_arm64.deb ... 167s Unpacking libwebpdemux2:arm64 (1.4.0-0.1) ... 167s Selecting previously unselected package libwebpmux3:arm64. 167s Preparing to unpack .../039-libwebpmux3_1.4.0-0.1_arm64.deb ... 167s Unpacking libwebpmux3:arm64 (1.4.0-0.1) ... 167s Selecting previously unselected package libxslt1.1:arm64. 167s Preparing to unpack .../040-libxslt1.1_1.1.39-0exp1ubuntu1_arm64.deb ... 167s Unpacking libxslt1.1:arm64 (1.1.39-0exp1ubuntu1) ... 167s Selecting previously unselected package python-matplotlib-data. 167s Preparing to unpack .../041-python-matplotlib-data_3.8.3-3_all.deb ... 167s Unpacking python-matplotlib-data (3.8.3-3) ... 168s Selecting previously unselected package python3.13. 168s Preparing to unpack .../042-python3.13_3.13.0-2_arm64.deb ... 168s Unpacking python3.13 (3.13.0-2) ... 168s Selecting previously unselected package python3-all. 168s Preparing to unpack .../043-python3-all_3.12.7-1_arm64.deb ... 168s Unpacking python3-all (3.12.7-1) ... 168s Selecting previously unselected package python3-annotated-types. 168s Preparing to unpack .../044-python3-annotated-types_0.7.0-1_all.deb ... 168s Unpacking python3-annotated-types (0.7.0-1) ... 168s Selecting previously unselected package python3-appdirs. 168s Preparing to unpack .../045-python3-appdirs_1.4.4-4_all.deb ... 168s Unpacking python3-appdirs (1.4.4-4) ... 168s Selecting previously unselected package python3-brotli. 168s Preparing to unpack .../046-python3-brotli_1.1.0-2build2_arm64.deb ... 168s Unpacking python3-brotli (1.1.0-2build2) ... 168s Selecting previously unselected package python3-bson. 168s Preparing to unpack .../047-python3-bson_4.7.3-2ubuntu1_all.deb ... 168s Unpacking python3-bson (4.7.3-2ubuntu1) ... 168s Selecting previously unselected package python3-numpy. 168s Preparing to unpack .../048-python3-numpy_1%3a1.26.4+ds-11build1_arm64.deb ... 168s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 168s Selecting previously unselected package python3-contourpy. 168s Preparing to unpack .../049-python3-contourpy_1.3.0-2_arm64.deb ... 168s Unpacking python3-contourpy (1.3.0-2) ... 168s Selecting previously unselected package python3-six. 168s Preparing to unpack .../050-python3-six_1.16.0-7_all.deb ... 168s Unpacking python3-six (1.16.0-7) ... 168s Selecting previously unselected package python3-dateutil. 168s Preparing to unpack .../051-python3-dateutil_2.9.0-2_all.deb ... 168s Unpacking python3-dateutil (2.9.0-2) ... 168s Selecting previously unselected package python3-tz. 168s Preparing to unpack .../052-python3-tz_2024.1-2_all.deb ... 168s Unpacking python3-tz (2024.1-2) ... 168s Selecting previously unselected package python3-pandas-lib:arm64. 168s Preparing to unpack .../053-python3-pandas-lib_2.2.3+dfsg-5_arm64.deb ... 168s Unpacking python3-pandas-lib:arm64 (2.2.3+dfsg-5) ... 168s Selecting previously unselected package python3-pandas. 168s Preparing to unpack .../054-python3-pandas_2.2.3+dfsg-5_all.deb ... 168s Unpacking python3-pandas (2.2.3+dfsg-5) ... 169s Selecting previously unselected package python3-pydantic-core. 169s Preparing to unpack .../055-python3-pydantic-core_2.23.4-2_arm64.deb ... 169s Unpacking python3-pydantic-core (2.23.4-2) ... 169s Selecting previously unselected package python3-dnspython. 169s Preparing to unpack .../056-python3-dnspython_2.6.1-1ubuntu1_all.deb ... 169s Unpacking python3-dnspython (2.6.1-1ubuntu1) ... 169s Selecting previously unselected package python3-email-validator. 169s Preparing to unpack .../057-python3-email-validator_2.2.0-1_all.deb ... 169s Unpacking python3-email-validator (2.2.0-1) ... 169s Selecting previously unselected package python3-pydantic. 169s Preparing to unpack .../058-python3-pydantic_2.9.1-1_arm64.deb ... 169s Unpacking python3-pydantic (2.9.1-1) ... 169s Selecting previously unselected package python3-tqdm. 169s Preparing to unpack .../059-python3-tqdm_4.67.0-1_all.deb ... 169s Unpacking python3-tqdm (4.67.0-1) ... 169s Selecting previously unselected package python3-monty. 169s Preparing to unpack .../060-python3-monty_2024.7.29-1_all.deb ... 169s Unpacking python3-monty (2024.7.29-1) ... 169s Selecting previously unselected package python3-psutil. 169s Preparing to unpack .../061-python3-psutil_5.9.8-2build2_arm64.deb ... 169s Unpacking python3-psutil (5.9.8-2build2) ... 169s Selecting previously unselected package python3-ruamel.yaml.clib:arm64. 169s Preparing to unpack .../062-python3-ruamel.yaml.clib_0.2.8+ds-2_arm64.deb ... 169s Unpacking python3-ruamel.yaml.clib:arm64 (0.2.8+ds-2) ... 169s Selecting previously unselected package python3-ruamel.yaml. 169s Preparing to unpack .../063-python3-ruamel.yaml_0.18.6+ds-3_all.deb ... 169s Unpacking python3-ruamel.yaml (0.18.6+ds-3) ... 169s Selecting previously unselected package python3-custodian. 169s Preparing to unpack .../064-python3-custodian_2024.6.24-1_all.deb ... 169s Unpacking python3-custodian (2024.6.24-1) ... 169s Selecting previously unselected package python3-cycler. 169s Preparing to unpack .../065-python3-cycler_0.12.1-1_all.deb ... 169s Unpacking python3-cycler (0.12.1-1) ... 169s Selecting previously unselected package python3-decorator. 169s Preparing to unpack .../066-python3-decorator_5.1.1-5_all.deb ... 169s Unpacking python3-decorator (5.1.1-5) ... 169s Selecting previously unselected package python3-fastjsonschema. 169s Preparing to unpack .../067-python3-fastjsonschema_2.20.0-1_all.deb ... 169s Unpacking python3-fastjsonschema (2.20.0-1) ... 169s Selecting previously unselected package python3-scipy. 169s Preparing to unpack .../068-python3-scipy_1.13.1-5_arm64.deb ... 169s Unpacking python3-scipy (1.13.1-5) ... 169s Selecting previously unselected package python3-ufolib2. 169s Preparing to unpack .../069-python3-ufolib2_0.16.1+dfsg1-1_all.deb ... 169s Unpacking python3-ufolib2 (0.16.1+dfsg1-1) ... 169s Selecting previously unselected package python3-mpmath. 170s Preparing to unpack .../070-python3-mpmath_1.3.0-1_all.deb ... 170s Unpacking python3-mpmath (1.3.0-1) ... 170s Selecting previously unselected package python3-sympy. 170s Preparing to unpack .../071-python3-sympy_1.13.3-1_all.deb ... 170s Unpacking python3-sympy (1.13.3-1) ... 170s Selecting previously unselected package python3-fs. 170s Preparing to unpack .../072-python3-fs_2.4.16-4_all.deb ... 170s Unpacking python3-fs (2.4.16-4) ... 170s Selecting previously unselected package python3-lxml:arm64. 170s Preparing to unpack .../073-python3-lxml_5.3.0-1_arm64.deb ... 170s Unpacking python3-lxml:arm64 (5.3.0-1) ... 170s Selecting previously unselected package python3-lz4. 170s Preparing to unpack .../074-python3-lz4_4.0.2+dfsg-1build4_arm64.deb ... 170s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 170s Selecting previously unselected package python3-unicodedata2. 170s Preparing to unpack .../075-python3-unicodedata2_15.1.0+ds-1build1_arm64.deb ... 170s Unpacking python3-unicodedata2 (15.1.0+ds-1build1) ... 170s Selecting previously unselected package unicode-data. 170s Preparing to unpack .../076-unicode-data_15.1.0-1_all.deb ... 170s Unpacking unicode-data (15.1.0-1) ... 170s Selecting previously unselected package python3-fonttools. 170s Preparing to unpack .../077-python3-fonttools_4.46.0-1build2_arm64.deb ... 170s Unpacking python3-fonttools (4.46.0-1build2) ... 170s Selecting previously unselected package python3-iniconfig. 170s Preparing to unpack .../078-python3-iniconfig_1.1.1-2_all.deb ... 170s Unpacking python3-iniconfig (1.1.1-2) ... 170s Selecting previously unselected package python3-joblib. 170s Preparing to unpack .../079-python3-joblib_1.3.2-5_all.deb ... 170s Unpacking python3-joblib (1.3.2-5) ... 170s Selecting previously unselected package python3-platformdirs. 170s Preparing to unpack .../080-python3-platformdirs_4.3.6-1_all.deb ... 170s Unpacking python3-platformdirs (4.3.6-1) ... 170s Selecting previously unselected package python3-traitlets. 171s Preparing to unpack .../081-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 171s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 171s Selecting previously unselected package python3-jupyter-core. 171s Preparing to unpack .../082-python3-jupyter-core_5.7.2-4_all.deb ... 171s Unpacking python3-jupyter-core (5.7.2-4) ... 171s Selecting previously unselected package python3-kiwisolver. 171s Preparing to unpack .../083-python3-kiwisolver_1.4.7-2_arm64.deb ... 171s Unpacking python3-kiwisolver (1.4.7-2) ... 171s Selecting previously unselected package python3-latexcodec. 171s Preparing to unpack .../084-python3-latexcodec_3.0.0-1_all.deb ... 171s Unpacking python3-latexcodec (3.0.0-1) ... 171s Selecting previously unselected package libopenjp2-7:arm64. 171s Preparing to unpack .../085-libopenjp2-7_2.5.0-2ubuntu1_arm64.deb ... 171s Unpacking libopenjp2-7:arm64 (2.5.0-2ubuntu1) ... 171s Selecting previously unselected package python3-pil:arm64. 171s Preparing to unpack .../086-python3-pil_10.4.0-1ubuntu1_arm64.deb ... 171s Unpacking python3-pil:arm64 (10.4.0-1ubuntu1) ... 171s Selecting previously unselected package python3.12-tk. 171s Preparing to unpack .../087-python3.12-tk_3.12.7-3_arm64.deb ... 171s Unpacking python3.12-tk (3.12.7-3) ... 171s Selecting previously unselected package python3.13-tk. 171s Preparing to unpack .../088-python3.13-tk_3.13.0-2_arm64.deb ... 171s Unpacking python3.13-tk (3.13.0-2) ... 171s Selecting previously unselected package python3-tk:arm64. 171s Preparing to unpack .../089-python3-tk_3.12.7-1_arm64.deb ... 171s Unpacking python3-tk:arm64 (3.12.7-1) ... 171s Selecting previously unselected package python3-pil.imagetk:arm64. 171s Preparing to unpack .../090-python3-pil.imagetk_10.4.0-1ubuntu1_arm64.deb ... 171s Unpacking python3-pil.imagetk:arm64 (10.4.0-1ubuntu1) ... 171s Selecting previously unselected package python3-packaging. 171s Preparing to unpack .../091-python3-packaging_24.1-1_all.deb ... 171s Unpacking python3-packaging (24.1-1) ... 171s Selecting previously unselected package python3-matplotlib. 171s Preparing to unpack .../092-python3-matplotlib_3.8.3-3_arm64.deb ... 171s Unpacking python3-matplotlib (3.8.3-3) ... 171s Selecting previously unselected package python3-nbformat. 171s Preparing to unpack .../093-python3-nbformat_5.9.1-1_all.deb ... 171s Unpacking python3-nbformat (5.9.1-1) ... 171s Selecting previously unselected package python3-networkx. 171s Preparing to unpack .../094-python3-networkx_3.2.1-4ubuntu1_all.deb ... 171s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 172s Selecting previously unselected package python3-palettable. 172s Preparing to unpack .../095-python3-palettable_3.3.3-1_all.deb ... 172s Unpacking python3-palettable (3.3.3-1) ... 172s Selecting previously unselected package python3-tenacity. 172s Preparing to unpack .../096-python3-tenacity_8.5.0-0ubuntu1_all.deb ... 172s Unpacking python3-tenacity (8.5.0-0ubuntu1) ... 172s Selecting previously unselected package python3-plotly. 172s Preparing to unpack .../097-python3-plotly_5.20.0+dfsg-1_all.deb ... 172s Unpacking python3-plotly (5.20.0+dfsg-1) ... 173s Selecting previously unselected package python3-pluggy. 173s Preparing to unpack .../098-python3-pluggy_1.5.0-1_all.deb ... 173s Unpacking python3-pluggy (1.5.0-1) ... 173s Selecting previously unselected package python3-pybtex. 173s Preparing to unpack .../099-python3-pybtex_0.24.0-4_all.deb ... 173s Unpacking python3-pybtex (0.24.0-4) ... 173s Selecting previously unselected package python3-spglib. 173s Preparing to unpack .../100-python3-spglib_2.4.0-1ubuntu1_arm64.deb ... 173s Unpacking python3-spglib (2.4.0-1ubuntu1) ... 173s Selecting previously unselected package python3-tabulate. 173s Preparing to unpack .../101-python3-tabulate_0.9.0-1_all.deb ... 173s Unpacking python3-tabulate (0.9.0-1) ... 173s Selecting previously unselected package python3-uncertainties. 173s Preparing to unpack .../102-python3-uncertainties_3.2.2-1_all.deb ... 173s Unpacking python3-uncertainties (3.2.2-1) ... 173s Selecting previously unselected package python3-pymatgen. 173s Preparing to unpack .../103-python3-pymatgen_2024.6.10+dfsg1-8_arm64.deb ... 173s Unpacking python3-pymatgen (2024.6.10+dfsg1-8) ... 173s Selecting previously unselected package python3-pytest. 173s Preparing to unpack .../104-python3-pytest_8.3.3-1_all.deb ... 173s Unpacking python3-pytest (8.3.3-1) ... 173s Selecting previously unselected package autopkgtest-satdep. 173s Preparing to unpack .../105-1-autopkgtest-satdep.deb ... 173s Unpacking autopkgtest-satdep (0) ... 173s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 173s Setting up liblcms2-2:arm64 (2.16-2) ... 173s Setting up python3-iniconfig (1.1.1-2) ... 174s Setting up libsharpyuv0:arm64 (1.4.0-0.1) ... 174s Setting up python3-pydantic-core (2.23.4-2) ... 174s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu2) ... 174s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 174s Setting up python3-joblib (1.3.2-5) ... 174s Setting up python3-lz4 (4.0.2+dfsg-1build4) ... 175s Setting up python3-unicodedata2 (15.1.0+ds-1build1) ... 175s Setting up fonts-lyx (2.4.2.1-1) ... 175s Setting up python3-tenacity (8.5.0-0ubuntu1) ... 175s Setting up python3-tqdm (4.67.0-1) ... 175s Setting up python3-ruamel.yaml.clib:arm64 (0.2.8+ds-2) ... 175s Setting up x11-common (1:7.7+23ubuntu3) ... 175s Setting up libdeflate0:arm64 (1.22-1) ... 175s Setting up python3-tabulate (0.9.0-1) ... 176s Setting up python3-latexcodec (3.0.0-1) ... 176s Setting up libqhull-r8.0:arm64 (2020.2-6build1) ... 176s Setting up libgomp1:arm64 (14.2.0-8ubuntu1) ... 176s Setting up python3-networkx (3.2.1-4ubuntu1) ... 178s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 178s Setting up python3-annotated-types (0.7.0-1) ... 179s Setting up python3-platformdirs (4.3.6-1) ... 179s Setting up python3-psutil (5.9.8-2build2) ... 179s Setting up python3-tz (2024.1-2) ... 180s Setting up unicode-data (15.1.0-1) ... 180s Setting up libsymspg2:arm64 (2.4.0-1ubuntu1) ... 180s Setting up python3-six (1.16.0-7) ... 180s Setting up python3-bson (4.7.3-2ubuntu1) ... 180s Setting up libpython3.13-minimal:arm64 (3.13.0-2) ... 180s Setting up python3-palettable (3.3.3-1) ... 181s Setting up python3-decorator (5.1.1-5) ... 181s Setting up libblas3:arm64 (3.12.0-3build2) ... 181s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 181s Setting up python3-packaging (24.1-1) ... 181s Setting up python3-brotli (1.1.0-2build2) ... 181s Setting up python3-cycler (0.12.1-1) ... 181s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 181s Setting up fonts-dejavu-mono (2.37-8) ... 181s Setting up python3-kiwisolver (1.4.7-2) ... 182s Setting up libtcl8.6:arm64 (8.6.15+dfsg-2) ... 182s Setting up fonts-dejavu-core (2.37-8) ... 182s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ... 182s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ... 182s Setting up python3-pluggy (1.5.0-1) ... 182s Setting up libwebp7:arm64 (1.4.0-0.1) ... 182s Setting up python3-pybtex (0.24.0-4) ... 182s Setting up python3-fastjsonschema (2.20.0-1) ... 182s Setting up python3-ruamel.yaml (0.18.6+ds-3) ... 183s Setting up python3-dnspython (2.6.1-1ubuntu1) ... 183s Setting up python3-traitlets (5.14.3+really5.14.3-1) ... 184s Setting up libxslt1.1:arm64 (1.1.39-0exp1ubuntu1) ... 184s Setting up libopenjp2-7:arm64 (2.5.0-2ubuntu1) ... 184s Setting up python3.13-minimal (3.13.0-2) ... 185s Setting up libharfbuzz0b:arm64 (10.0.1-1) ... 185s Setting up python3-dateutil (2.9.0-2) ... 185s Setting up python3-email-validator (2.2.0-1) ... 185s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 185s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 185s Setting up python3-mpmath (1.3.0-1) ... 186s Setting up python-matplotlib-data (3.8.3-3) ... 186s Setting up libwebpmux3:arm64 (1.4.0-0.1) ... 186s Setting up python3-appdirs (1.4.4-4) ... 186s Setting up libpython3.13-stdlib:arm64 (3.13.0-2) ... 186s Setting up python3-jupyter-core (5.7.2-4) ... 187s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 187s Setting up python3-sympy (1.13.3-1) ... 200s Setting up liblapack3:arm64 (3.12.0-3build2) ... 200s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 200s Setting up python3.13 (3.13.0-2) ... 201s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 201s Setting up python3-pytest (8.3.3-1) ... 202s Setting up libwebpdemux2:arm64 (1.4.0-0.1) ... 202s Setting up python3-all (3.12.7-1) ... 202s Setting up python3-nbformat (5.9.1-1) ... 202s Setting up python3-fs (2.4.16-4) ... 202s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 202s Setting up python3-pydantic (2.9.1-1) ... 203s Setting up libraqm0:arm64 (0.10.1-1build1) ... 203s Setting up python3-plotly (5.20.0+dfsg-1) ... 215s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 219s Setting up python3-lxml:arm64 (5.3.0-1) ... 219s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 219s Setting up python3-contourpy (1.3.0-2) ... 220s Setting up libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... 220s Setting up python3-spglib (2.4.0-1ubuntu1) ... 220s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 220s Setting up python3-uncertainties (3.2.2-1) ... 220s Setting up libxft2:arm64 (2.3.6-1build1) ... 220s Setting up python3-scipy (1.13.1-5) ... 227s Setting up libtk8.6:arm64 (8.6.15-1) ... 227s Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-5) ... 227s Setting up python3.12-tk (3.12.7-3) ... 227s Setting up python3.13-tk (3.13.0-2) ... 227s Setting up python3-pil:arm64 (10.4.0-1ubuntu1) ... 228s Setting up python3-pandas (2.2.3+dfsg-5) ... 239s Setting up python3-monty (2024.7.29-1) ... 239s Setting up python3-custodian (2024.6.24-1) ... 239s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 239s Setting up blt (2.5.3+dfsg-7build1) ... 239s Setting up python3-tk:arm64 (3.12.7-1) ... 239s Setting up python3-pil.imagetk:arm64 (10.4.0-1ubuntu1) ... 240s Setting up python3-fonttools (4.46.0-1build2) ... 241s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... 242s Setting up python3-matplotlib (3.8.3-3) ... 245s Setting up python3-pymatgen (2024.6.10+dfsg1-8) ... 246s /usr/lib/python3/dist-packages/pymatgen/io/lammps/outputs.py:115: SyntaxWarning: invalid escape sequence '\+' 246s pattern = file_pattern.replace("+","\+").replace("*", "([0-9]+)").replace("\\", "\\\\") 247s /usr/lib/python3/dist-packages/pymatgen/io/lammps/outputs.py:115: SyntaxWarning: invalid escape sequence '\+' 247s pattern = file_pattern.replace("+","\+").replace("*", "([0-9]+)").replace("\\", "\\\\") 248s Setting up autopkgtest-satdep (0) ... 248s Processing triggers for libc-bin (2.40-1ubuntu3) ... 248s Processing triggers for systemd (256.5-2ubuntu4) ... 248s Processing triggers for man-db (2.12.1-3) ... 254s (Reading database ... 108189 files and directories currently installed.) 254s Removing autopkgtest-satdep (0) ... 255s autopkgtest [09:01:54]: test test-custodian: [----------------------- 256s ============================= test session starts ============================== 256s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13 256s cachedir: .pytest_cache 256s rootdir: /tmp/autopkgtest.cZsUIE/autopkgtest_tmp/runtests 256s plugins: typeguard-4.4.1 257s collecting ... collected 18 items / 13 errors / 3 skipped 257s 257s ==================================== ERRORS ==================================== 257s _________________ ERROR collecting tests/cp2k/test_handlers.py _________________ 257s ImportError while importing test module '/tmp/autopkgtest.cZsUIE/autopkgtest_tmp/runtests/tests/cp2k/test_handlers.py'. 257s Hint: make sure your test modules/packages have valid Python names. 257s Traceback: 257s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 257s from . import multiarray 257s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 257s from . import overrides 257s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 257s from numpy.core._multiarray_umath import ( 257s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 257s 257s During handling of the above exception, another exception occurred: 257s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 257s from numpy.__config__ import show as show_config 257s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 257s from numpy.core._multiarray_umath import ( 257s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 257s raise ImportError(msg) 257s E ImportError: 257s E 257s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 257s E 257s E Importing the numpy C-extensions failed. This error can happen for 257s E many reasons, often due to issues with your setup or how NumPy was 257s E installed. 257s E 257s E We have compiled some common reasons and troubleshooting tips at: 257s E 257s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 257s E 257s E Please note and check the following: 257s E 257s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 257s E * The NumPy version is: "1.26.4" 257s E 257s E and make sure that they are the versions you expect. 257s E Please carefully study the documentation linked above for further help. 257s E 257s E Original error was: No module named 'numpy.core._multiarray_umath' 257s 257s The above exception was the direct cause of the following exception: 257s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 257s return _bootstrap._gcd_import(name[level:], package, level) 257s tests/cp2k/test_handlers.py:11: in 257s from pymatgen.io.cp2k.inputs import Keyword, KeywordList 257s /usr/lib/python3/dist-packages/pymatgen/io/cp2k/inputs.py:41: in 257s from pymatgen.core import Element 257s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:12: in 257s from pymatgen.core.composition import Composition 257s /usr/lib/python3/dist-packages/pymatgen/core/composition.py:22: in 257s from pymatgen.core.periodic_table import DummySpecies, Element, ElementType, Species, get_el_sp 257s /usr/lib/python3/dist-packages/pymatgen/core/periodic_table.py:17: in 257s import numpy as np 257s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 257s raise ImportError(msg) from e 257s E ImportError: Error importing numpy: you should not try to import numpy from 257s E its source directory; please exit the numpy source tree, and relaunch 257s E your python interpreter from there. 257s ___________________ ERROR collecting tests/cp2k/test_jobs.py ___________________ 257s ImportError while importing test module '/tmp/autopkgtest.cZsUIE/autopkgtest_tmp/runtests/tests/cp2k/test_jobs.py'. 257s Hint: make sure your test modules/packages have valid Python names. 257s Traceback: 257s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 257s from . import multiarray 257s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 257s from . import overrides 257s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 257s from numpy.core._multiarray_umath import ( 257s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 257s 257s During handling of the above exception, another exception occurred: 257s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 257s from numpy.__config__ import show as show_config 257s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 257s from numpy.core._multiarray_umath import ( 257s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 257s raise ImportError(msg) 257s E ImportError: 257s E 257s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 257s E 257s E Importing the numpy C-extensions failed. This error can happen for 257s E many reasons, often due to issues with your setup or how NumPy was 257s E installed. 257s E 257s E We have compiled some common reasons and troubleshooting tips at: 257s E 257s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 257s E 257s E Please note and check the following: 257s E 257s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 257s E * The NumPy version is: "1.26.4" 257s E 257s E and make sure that they are the versions you expect. 257s E Please carefully study the documentation linked above for further help. 257s E 257s E Original error was: No module named 'numpy.core._multiarray_umath' 257s 257s The above exception was the direct cause of the following exception: 257s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 257s return _bootstrap._gcd_import(name[level:], package, level) 257s tests/cp2k/test_jobs.py:11: in 257s from custodian.cp2k.jobs import Cp2kJob 257s /usr/lib/python3/dist-packages/custodian/cp2k/jobs.py:10: in 257s from pymatgen.io.cp2k.inputs import Cp2kInput, Keyword 257s /usr/lib/python3/dist-packages/pymatgen/io/cp2k/inputs.py:41: in 257s from pymatgen.core import Element 257s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:12: in 257s from pymatgen.core.composition import Composition 257s /usr/lib/python3/dist-packages/pymatgen/core/composition.py:22: in 257s from pymatgen.core.periodic_table import DummySpecies, Element, ElementType, Species, get_el_sp 257s /usr/lib/python3/dist-packages/pymatgen/core/periodic_table.py:17: in 257s import numpy as np 257s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 257s raise ImportError(msg) from e 257s E ImportError: Error importing numpy: you should not try to import numpy from 257s E its source directory; please exit the numpy source tree, and relaunch 257s E your python interpreter from there. 257s _________________ ERROR collecting tests/feff/test_handlers.py _________________ 257s ImportError while importing test module '/tmp/autopkgtest.cZsUIE/autopkgtest_tmp/runtests/tests/feff/test_handlers.py'. 257s Hint: make sure your test modules/packages have valid Python names. 257s Traceback: 257s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 257s from . import multiarray 257s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 257s from . import overrides 257s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 257s from numpy.core._multiarray_umath import ( 257s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 257s 257s During handling of the above exception, another exception occurred: 257s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 257s from numpy.__config__ import show as show_config 257s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 257s from numpy.core._multiarray_umath import ( 257s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 257s raise ImportError(msg) 257s E ImportError: 257s E 257s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 257s E 257s E Importing the numpy C-extensions failed. This error can happen for 257s E many reasons, often due to issues with your setup or how NumPy was 257s E installed. 257s E 257s E We have compiled some common reasons and troubleshooting tips at: 257s E 257s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 257s E 257s E Please note and check the following: 257s E 257s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 257s E * The NumPy version is: "1.26.4" 257s E 257s E and make sure that they are the versions you expect. 257s E Please carefully study the documentation linked above for further help. 257s E 257s E Original error was: No module named 'numpy.core._multiarray_umath' 257s 257s The above exception was the direct cause of the following exception: 257s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 257s return _bootstrap._gcd_import(name[level:], package, level) 257s tests/feff/test_handlers.py:6: in 257s from custodian.feff.handlers import UnconvergedErrorHandler 257s /usr/lib/python3/dist-packages/custodian/feff/handlers.py:9: in 257s from pymatgen.io.feff.sets import FEFFDictSet 257s /usr/lib/python3/dist-packages/pymatgen/io/feff/__init__.py:9: in 257s from .inputs import ( 257s /usr/lib/python3/dist-packages/pymatgen/io/feff/inputs.py:15: in 257s import numpy as np 257s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 257s raise ImportError(msg) from e 257s E ImportError: Error importing numpy: you should not try to import numpy from 257s E its source directory; please exit the numpy source tree, and relaunch 257s E your python interpreter from there. 257s ___________________ ERROR collecting tests/feff/test_jobs.py ___________________ 257s ImportError while importing test module '/tmp/autopkgtest.cZsUIE/autopkgtest_tmp/runtests/tests/feff/test_jobs.py'. 257s Hint: make sure your test modules/packages have valid Python names. 257s Traceback: 257s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 257s from . import multiarray 257s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 257s from . import overrides 257s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 257s from numpy.core._multiarray_umath import ( 257s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 257s 257s During handling of the above exception, another exception occurred: 257s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 257s from numpy.__config__ import show as show_config 257s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 257s from numpy.core._multiarray_umath import ( 257s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 257s raise ImportError(msg) 257s E ImportError: 257s E 257s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 257s E 257s E Importing the numpy C-extensions failed. This error can happen for 257s E many reasons, often due to issues with your setup or how NumPy was 257s E installed. 257s E 257s E We have compiled some common reasons and troubleshooting tips at: 257s E 257s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 257s E 257s E Please note and check the following: 257s E 257s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 257s E * The NumPy version is: "1.26.4" 257s E 257s E and make sure that they are the versions you expect. 257s E Please carefully study the documentation linked above for further help. 257s E 257s E Original error was: No module named 'numpy.core._multiarray_umath' 257s 257s The above exception was the direct cause of the following exception: 257s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 257s return _bootstrap._gcd_import(name[level:], package, level) 257s tests/feff/test_jobs.py:5: in 257s from pymatgen.io.feff.inputs import Atoms, Tags 257s /usr/lib/python3/dist-packages/pymatgen/io/feff/__init__.py:9: in 257s from .inputs import ( 257s /usr/lib/python3/dist-packages/pymatgen/io/feff/inputs.py:15: in 257s import numpy as np 257s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 257s raise ImportError(msg) from e 257s E ImportError: Error importing numpy: you should not try to import numpy from 257s E its source directory; please exit the numpy source tree, and relaunch 257s E your python interpreter from there. 257s _______________ ERROR collecting tests/gaussian/test_handlers.py _______________ 257s ImportError while importing test module '/tmp/autopkgtest.cZsUIE/autopkgtest_tmp/runtests/tests/gaussian/test_handlers.py'. 257s Hint: make sure your test modules/packages have valid Python names. 257s Traceback: 257s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 257s from . import multiarray 257s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 257s from . import overrides 257s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 257s from numpy.core._multiarray_umath import ( 257s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 257s 257s During handling of the above exception, another exception occurred: 257s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 257s from numpy.__config__ import show as show_config 257s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 257s from numpy.core._multiarray_umath import ( 257s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 257s raise ImportError(msg) 257s E ImportError: 257s E 257s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 257s E 257s E Importing the numpy C-extensions failed. This error can happen for 257s E many reasons, often due to issues with your setup or how NumPy was 257s E installed. 257s E 257s E We have compiled some common reasons and troubleshooting tips at: 257s E 257s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 257s E 257s E Please note and check the following: 257s E 257s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 257s E * The NumPy version is: "1.26.4" 257s E 257s E and make sure that they are the versions you expect. 257s E Please carefully study the documentation linked above for further help. 257s E 257s E Original error was: No module named 'numpy.core._multiarray_umath' 257s 257s The above exception was the direct cause of the following exception: 257s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 257s return _bootstrap._gcd_import(name[level:], package, level) 257s tests/gaussian/test_handlers.py:8: in 257s from custodian.gaussian.handlers import GaussianErrorHandler, WallTimeErrorHandler 257s /usr/lib/python3/dist-packages/custodian/gaussian/handlers.py:14: in 257s import numpy as np 257s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 257s raise ImportError(msg) from e 257s E ImportError: Error importing numpy: you should not try to import numpy from 257s E its source directory; please exit the numpy source tree, and relaunch 257s E your python interpreter from there. 257s _________________ ERROR collecting tests/gaussian/test_jobs.py _________________ 257s ImportError while importing test module '/tmp/autopkgtest.cZsUIE/autopkgtest_tmp/runtests/tests/gaussian/test_jobs.py'. 257s Hint: make sure your test modules/packages have valid Python names. 257s Traceback: 257s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 257s from . import multiarray 257s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 257s from . import overrides 257s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 257s from numpy.core._multiarray_umath import ( 257s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 257s 257s During handling of the above exception, another exception occurred: 257s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 257s from numpy.__config__ import show as show_config 257s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 257s from numpy.core._multiarray_umath import ( 257s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 257s raise ImportError(msg) 257s E ImportError: 257s E 257s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 257s E 257s E Importing the numpy C-extensions failed. This error can happen for 257s E many reasons, often due to issues with your setup or how NumPy was 257s E installed. 257s E 257s E We have compiled some common reasons and troubleshooting tips at: 257s E 257s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 257s E 257s E Please note and check the following: 257s E 257s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 257s E * The NumPy version is: "1.26.4" 257s E 257s E and make sure that they are the versions you expect. 257s E Please carefully study the documentation linked above for further help. 257s E 257s E Original error was: No module named 'numpy.core._multiarray_umath' 257s 257s The above exception was the direct cause of the following exception: 257s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 257s return _bootstrap._gcd_import(name[level:], package, level) 257s tests/gaussian/test_jobs.py:7: in 257s from custodian.gaussian.jobs import GaussianJob 257s /usr/lib/python3/dist-packages/custodian/gaussian/jobs.py:12: in 257s from pymatgen.io.gaussian import GaussianInput, GaussianOutput 257s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:9: in 257s import numpy as np 257s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 257s raise ImportError(msg) from e 257s E ImportError: Error importing numpy: you should not try to import numpy from 257s E its source directory; please exit the numpy source tree, and relaunch 257s E your python interpreter from there. 257s _______________ ERROR collecting tests/lobster/test_handlers.py ________________ 257s ImportError while importing test module '/tmp/autopkgtest.cZsUIE/autopkgtest_tmp/runtests/tests/lobster/test_handlers.py'. 257s Hint: make sure your test modules/packages have valid Python names. 257s Traceback: 257s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 257s from . import multiarray 257s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 257s from . import overrides 257s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 257s from numpy.core._multiarray_umath import ( 257s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 257s 257s During handling of the above exception, another exception occurred: 257s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 257s from numpy.__config__ import show as show_config 257s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 257s from numpy.core._multiarray_umath import ( 257s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 257s raise ImportError(msg) 257s E ImportError: 257s E 257s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 257s E 257s E Importing the numpy C-extensions failed. This error can happen for 257s E many reasons, often due to issues with your setup or how NumPy was 257s E installed. 257s E 257s E We have compiled some common reasons and troubleshooting tips at: 257s E 257s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 257s E 257s E Please note and check the following: 257s E 257s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 257s E * The NumPy version is: "1.26.4" 257s E 257s E and make sure that they are the versions you expect. 257s E Please carefully study the documentation linked above for further help. 257s E 257s E Original error was: No module named 'numpy.core._multiarray_umath' 257s 257s The above exception was the direct cause of the following exception: 257s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 257s return _bootstrap._gcd_import(name[level:], package, level) 257s tests/lobster/test_handlers.py:3: in 257s from custodian.lobster.handlers import ChargeSpillingValidator, EnoughBandsValidator, LobsterFilesValidator 257s /usr/lib/python3/dist-packages/custodian/lobster/handlers.py:5: in 257s from pymatgen.io.lobster import Lobsterout 257s /usr/lib/python3/dist-packages/pymatgen/io/lobster/__init__.py:10: in 257s from .inputs import Lobsterin 257s /usr/lib/python3/dist-packages/pymatgen/io/lobster/inputs.py:20: in 257s import numpy as np 257s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 257s raise ImportError(msg) from e 257s E ImportError: Error importing numpy: you should not try to import numpy from 257s E its source directory; please exit the numpy source tree, and relaunch 257s E your python interpreter from there. 257s ________________ ERROR collecting tests/nwchem/test_handlers.py ________________ 257s ImportError while importing test module '/tmp/autopkgtest.cZsUIE/autopkgtest_tmp/runtests/tests/nwchem/test_handlers.py'. 257s Hint: make sure your test modules/packages have valid Python names. 257s Traceback: 257s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 257s from . import multiarray 257s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 257s from . import overrides 257s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 257s from numpy.core._multiarray_umath import ( 257s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 257s 257s During handling of the above exception, another exception occurred: 257s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 257s from numpy.__config__ import show as show_config 257s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 257s from numpy.core._multiarray_umath import ( 257s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 257s raise ImportError(msg) 257s E ImportError: 257s E 257s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 257s E 257s E Importing the numpy C-extensions failed. This error can happen for 257s E many reasons, often due to issues with your setup or how NumPy was 257s E installed. 257s E 257s E We have compiled some common reasons and troubleshooting tips at: 257s E 257s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 257s E 257s E Please note and check the following: 257s E 257s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 257s E * The NumPy version is: "1.26.4" 257s E 257s E and make sure that they are the versions you expect. 257s E Please carefully study the documentation linked above for further help. 257s E 257s E Original error was: No module named 'numpy.core._multiarray_umath' 257s 257s The above exception was the direct cause of the following exception: 257s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 257s return _bootstrap._gcd_import(name[level:], package, level) 257s tests/nwchem/test_handlers.py:5: in 257s from custodian.nwchem.handlers import NwchemErrorHandler 257s /usr/lib/python3/dist-packages/custodian/nwchem/handlers.py:8: in 257s from pymatgen.io.nwchem import NwInput, NwOutput 257s /usr/lib/python3/dist-packages/pymatgen/io/nwchem.py:29: in 257s import numpy as np 257s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 257s raise ImportError(msg) from e 257s E ImportError: Error importing numpy: you should not try to import numpy from 257s E its source directory; please exit the numpy source tree, and relaunch 257s E your python interpreter from there. 257s _________________ ERROR collecting tests/vasp/test_handlers.py _________________ 257s ImportError while importing test module '/tmp/autopkgtest.cZsUIE/autopkgtest_tmp/runtests/tests/vasp/test_handlers.py'. 257s Hint: make sure your test modules/packages have valid Python names. 257s Traceback: 257s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 257s from . import multiarray 257s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 257s from . import overrides 257s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 257s from numpy.core._multiarray_umath import ( 257s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 257s 257s During handling of the above exception, another exception occurred: 257s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 257s from numpy.__config__ import show as show_config 257s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 257s from numpy.core._multiarray_umath import ( 257s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 257s raise ImportError(msg) 257s E ImportError: 257s E 257s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 257s E 257s E Importing the numpy C-extensions failed. This error can happen for 257s E many reasons, often due to issues with your setup or how NumPy was 257s E installed. 257s E 257s E We have compiled some common reasons and troubleshooting tips at: 257s E 257s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 257s E 257s E Please note and check the following: 257s E 257s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 257s E * The NumPy version is: "1.26.4" 257s E 257s E and make sure that they are the versions you expect. 257s E Please carefully study the documentation linked above for further help. 257s E 257s E Original error was: No module named 'numpy.core._multiarray_umath' 257s 257s The above exception was the direct cause of the following exception: 257s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 257s return _bootstrap._gcd_import(name[level:], package, level) 257s tests/vasp/test_handlers.py:10: in 257s from pymatgen.io.vasp.inputs import Incar, Kpoints, Structure, VaspInput 257s /usr/lib/python3/dist-packages/pymatgen/io/vasp/__init__.py:10: in 257s from .inputs import Incar, Kpoints, Poscar, Potcar, PotcarSingle, VaspInput 257s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:27: in 257s import numpy as np 257s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 257s raise ImportError(msg) from e 257s E ImportError: Error importing numpy: you should not try to import numpy from 257s E its source directory; please exit the numpy source tree, and relaunch 257s E your python interpreter from there. 257s ____________________ ERROR collecting tests/vasp/test_io.py ____________________ 257s ImportError while importing test module '/tmp/autopkgtest.cZsUIE/autopkgtest_tmp/runtests/tests/vasp/test_io.py'. 257s Hint: make sure your test modules/packages have valid Python names. 257s Traceback: 257s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 257s from . import multiarray 257s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 257s from . import overrides 257s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 257s from numpy.core._multiarray_umath import ( 257s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 257s 257s During handling of the above exception, another exception occurred: 257s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 257s from numpy.__config__ import show as show_config 257s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 257s from numpy.core._multiarray_umath import ( 257s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 257s raise ImportError(msg) 257s E ImportError: 257s E 257s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 257s E 257s E Importing the numpy C-extensions failed. This error can happen for 257s E many reasons, often due to issues with your setup or how NumPy was 257s E installed. 257s E 257s E We have compiled some common reasons and troubleshooting tips at: 257s E 257s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 257s E 257s E Please note and check the following: 257s E 257s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 257s E * The NumPy version is: "1.26.4" 257s E 257s E and make sure that they are the versions you expect. 257s E Please carefully study the documentation linked above for further help. 257s E 257s E Original error was: No module named 'numpy.core._multiarray_umath' 257s 257s The above exception was the direct cause of the following exception: 257s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 257s return _bootstrap._gcd_import(name[level:], package, level) 257s tests/vasp/test_io.py:5: in 257s from custodian.vasp.io import load_outcar, load_vasprun 257s /usr/lib/python3/dist-packages/custodian/vasp/io.py:3: in 257s from pymatgen.io.vasp.outputs import Outcar, Vasprun 257s /usr/lib/python3/dist-packages/pymatgen/io/vasp/__init__.py:10: in 257s from .inputs import Incar, Kpoints, Poscar, Potcar, PotcarSingle, VaspInput 257s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:27: in 257s import numpy as np 257s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 257s raise ImportError(msg) from e 257s E ImportError: Error importing numpy: you should not try to import numpy from 257s E its source directory; please exit the numpy source tree, and relaunch 257s E your python interpreter from there. 257s ___________________ ERROR collecting tests/vasp/test_jobs.py ___________________ 257s ImportError while importing test module '/tmp/autopkgtest.cZsUIE/autopkgtest_tmp/runtests/tests/vasp/test_jobs.py'. 257s Hint: make sure your test modules/packages have valid Python names. 257s Traceback: 257s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 257s from . import multiarray 257s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 257s from . import overrides 257s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 257s from numpy.core._multiarray_umath import ( 257s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 257s 257s During handling of the above exception, another exception occurred: 257s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 257s from numpy.__config__ import show as show_config 257s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 257s from numpy.core._multiarray_umath import ( 257s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 257s raise ImportError(msg) 257s E ImportError: 257s E 257s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 257s E 257s E Importing the numpy C-extensions failed. This error can happen for 257s E many reasons, often due to issues with your setup or how NumPy was 257s E installed. 257s E 257s E We have compiled some common reasons and troubleshooting tips at: 257s E 257s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 257s E 257s E Please note and check the following: 257s E 257s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 257s E * The NumPy version is: "1.26.4" 257s E 257s E and make sure that they are the versions you expect. 257s E Please carefully study the documentation linked above for further help. 257s E 257s E Original error was: No module named 'numpy.core._multiarray_umath' 257s 257s The above exception was the direct cause of the following exception: 257s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 257s return _bootstrap._gcd_import(name[level:], package, level) 257s tests/vasp/test_jobs.py:10: in 257s from pymatgen.io.vasp import Incar, Kpoints, Poscar 257s /usr/lib/python3/dist-packages/pymatgen/io/vasp/__init__.py:10: in 257s from .inputs import Incar, Kpoints, Poscar, Potcar, PotcarSingle, VaspInput 257s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:27: in 257s import numpy as np 257s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 257s raise ImportError(msg) from e 257s E ImportError: Error importing numpy: you should not try to import numpy from 257s E its source directory; please exit the numpy source tree, and relaunch 257s E your python interpreter from there. 257s __________________ ERROR collecting tests/vasp/test_utils.py ___________________ 257s ImportError while importing test module '/tmp/autopkgtest.cZsUIE/autopkgtest_tmp/runtests/tests/vasp/test_utils.py'. 257s Hint: make sure your test modules/packages have valid Python names. 257s Traceback: 257s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 257s from . import multiarray 257s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 257s from . import overrides 257s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 257s from numpy.core._multiarray_umath import ( 257s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 257s 257s During handling of the above exception, another exception occurred: 257s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 257s from numpy.__config__ import show as show_config 257s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 257s from numpy.core._multiarray_umath import ( 257s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 257s raise ImportError(msg) 257s E ImportError: 257s E 257s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 257s E 257s E Importing the numpy C-extensions failed. This error can happen for 257s E many reasons, often due to issues with your setup or how NumPy was 257s E installed. 257s E 257s E We have compiled some common reasons and troubleshooting tips at: 257s E 257s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 257s E 257s E Please note and check the following: 257s E 257s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 257s E * The NumPy version is: "1.26.4" 257s E 257s E and make sure that they are the versions you expect. 257s E Please carefully study the documentation linked above for further help. 257s E 257s E Original error was: No module named 'numpy.core._multiarray_umath' 257s 257s The above exception was the direct cause of the following exception: 257s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 257s return _bootstrap._gcd_import(name[level:], package, level) 257s tests/vasp/test_utils.py:5: in 257s import numpy as np 257s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 257s raise ImportError(msg) from e 257s E ImportError: Error importing numpy: you should not try to import numpy from 257s E its source directory; please exit the numpy source tree, and relaunch 257s E your python interpreter from there. 257s ________________ ERROR collecting tests/vasp/test_validators.py ________________ 257s ImportError while importing test module '/tmp/autopkgtest.cZsUIE/autopkgtest_tmp/runtests/tests/vasp/test_validators.py'. 257s Hint: make sure your test modules/packages have valid Python names. 257s Traceback: 257s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 257s from . import multiarray 257s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 257s from . import overrides 257s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 257s from numpy.core._multiarray_umath import ( 257s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 257s 257s During handling of the above exception, another exception occurred: 257s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 257s from numpy.__config__ import show as show_config 257s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 257s from numpy.core._multiarray_umath import ( 257s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 257s raise ImportError(msg) 257s E ImportError: 257s E 257s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 257s E 257s E Importing the numpy C-extensions failed. This error can happen for 257s E many reasons, often due to issues with your setup or how NumPy was 257s E installed. 257s E 257s E We have compiled some common reasons and troubleshooting tips at: 257s E 257s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 257s E 257s E Please note and check the following: 257s E 257s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 257s E * The NumPy version is: "1.26.4" 257s E 257s E and make sure that they are the versions you expect. 257s E Please carefully study the documentation linked above for further help. 257s E 257s E Original error was: No module named 'numpy.core._multiarray_umath' 257s 257s The above exception was the direct cause of the following exception: 257s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 257s return _bootstrap._gcd_import(name[level:], package, level) 257s tests/vasp/test_validators.py:6: in 257s from custodian.vasp.validators import VaspAECCARValidator, VaspFilesValidator, VaspNpTMDValidator, VasprunXMLValidator 257s /usr/lib/python3/dist-packages/custodian/vasp/validators.py:9: in 257s from pymatgen.io.vasp import Chgcar, Incar 257s /usr/lib/python3/dist-packages/pymatgen/io/vasp/__init__.py:10: in 257s from .inputs import Incar, Kpoints, Poscar, Potcar, PotcarSingle, VaspInput 257s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:27: in 257s import numpy as np 257s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 257s raise ImportError(msg) from e 257s E ImportError: Error importing numpy: you should not try to import numpy from 257s E its source directory; please exit the numpy source tree, and relaunch 257s E your python interpreter from there. 257s =========================== short test summary info ============================ 257s ERROR tests/cp2k/test_handlers.py 257s ERROR tests/cp2k/test_jobs.py 257s ERROR tests/feff/test_handlers.py 257s ERROR tests/feff/test_jobs.py 257s ERROR tests/gaussian/test_handlers.py 257s ERROR tests/gaussian/test_jobs.py 257s ERROR tests/lobster/test_handlers.py 257s ERROR tests/nwchem/test_handlers.py 257s ERROR tests/vasp/test_handlers.py 257s ERROR tests/vasp/test_io.py 257s ERROR tests/vasp/test_jobs.py 257s ERROR tests/vasp/test_utils.py 257s ERROR tests/vasp/test_validators.py 257s !!!!!!!!!!!!!!!!!!! Interrupted: 13 errors during collection !!!!!!!!!!!!!!!!!!! 257s ======================== 3 skipped, 13 errors in 1.57s ========================= 258s autopkgtest [09:01:57]: test test-custodian: -----------------------] 258s test-custodian FAIL non-zero exit status 2 258s autopkgtest [09:01:57]: test test-custodian: - - - - - - - - - - results - - - - - - - - - - 259s autopkgtest [09:01:58]: @@@@@@@@@@@@@@@@@@@@ summary 259s test-custodian FAIL non-zero exit status 2 281s virt: nova [W] Skipping flock in bos03-arm64 281s virt: Creating nova instance adt-plucky-arm64-custodian-20241113-085739-juju-7f2275-prod-proposed-migration-environment-2-60546143-303f-4d75-be05-ca5cc9d86a8b from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)...