0s autopkgtest [08:51:39]: starting date and time: 2024-11-13 08:51:39+0000 0s autopkgtest [08:51:39]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [08:51:39]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ga9xzbo2/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade busco --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-16.secgroup --name adt-plucky-arm64-busco-20241113-085139-juju-7f2275-prod-proposed-migration-environment-20-436589dd-f0d0-4b4c-92bc-8d299b5dd822 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 241s autopkgtest [08:55:40]: testbed dpkg architecture: arm64 241s autopkgtest [08:55:40]: testbed apt version: 2.9.8 241s autopkgtest [08:55:40]: @@@@@@@@@@@@@@@@@@@@ test bed setup 242s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 242s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 243s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 243s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 243s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 243s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB] 243s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 243s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB] 243s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB] 243s Fetched 1793 kB in 1s (2135 kB/s) 243s Reading package lists... 246s Reading package lists... 246s Building dependency tree... 246s Reading state information... 246s Calculating upgrade... 247s The following NEW packages will be installed: 247s python3.13-gdbm 247s The following packages will be upgraded: 247s libpython3-stdlib python3 python3-gdbm python3-minimal 247s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 247s Need to get 101 kB of archives. 247s After this operation, 141 kB of additional disk space will be used. 247s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB] 247s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB] 247s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB] 247s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB] 247s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B] 248s Fetched 101 kB in 0s (289 kB/s) 248s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 248s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ... 248s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 248s Setting up python3-minimal (3.12.7-1) ... 248s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 248s Preparing to unpack .../python3_3.12.7-1_arm64.deb ... 249s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 249s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ... 249s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 249s Selecting previously unselected package python3.13-gdbm. 249s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ... 249s Unpacking python3.13-gdbm (3.13.0-2) ... 249s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ... 249s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 249s Setting up python3.13-gdbm (3.13.0-2) ... 249s Setting up libpython3-stdlib:arm64 (3.12.7-1) ... 249s Setting up python3 (3.12.7-1) ... 249s Setting up python3-gdbm:arm64 (3.12.7-1) ... 249s Processing triggers for man-db (2.12.1-3) ... 250s Reading package lists... 250s Building dependency tree... 250s Reading state information... 251s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 252s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 252s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 252s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 252s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 253s Reading package lists... 253s Reading package lists... 253s Building dependency tree... 253s Reading state information... 254s Calculating upgrade... 254s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 254s Reading package lists... 255s Building dependency tree... 255s Reading state information... 256s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 258s autopkgtest [08:55:57]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 259s autopkgtest [08:55:58]: @@@@@@@@@@@@@@@@@@@@ apt-source busco 260s Get:1 http://ftpmaster.internal/ubuntu plucky/universe busco 5.5.0-2 (dsc) [2079 B] 260s Get:2 http://ftpmaster.internal/ubuntu plucky/universe busco 5.5.0-2 (tar) [392 kB] 260s Get:3 http://ftpmaster.internal/ubuntu plucky/universe busco 5.5.0-2 (diff) [8244 B] 261s gpgv: Signature made Tue Dec 19 16:28:54 2023 UTC 261s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 261s gpgv: issuer "tille@debian.org" 261s gpgv: Can't check signature: No public key 261s dpkg-source: warning: cannot verify inline signature for ./busco_5.5.0-2.dsc: no acceptable signature found 261s autopkgtest [08:56:00]: testing package busco version 5.5.0-2 261s autopkgtest [08:56:00]: build not needed 261s autopkgtest [08:56:00]: test run-unit-test: preparing testbed 265s Reading package lists... 265s Building dependency tree... 265s Reading state information... 266s Starting pkgProblemResolver with broken count: 0 266s Starting 2 pkgProblemResolver with broken count: 0 266s Done 267s The following additional packages will be installed: 267s bbmap busco ca-certificates-java diffstat fontconfig-config 267s fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 gettext hmmer 267s java-common libapache-pom-java libblas3 libcairo2 libcommons-cli-java 267s libcommons-codec-java libcommons-io-java libcommons-parent-java libdeflate0 267s libdivsufsort3 libfontconfig1 libfontenc1 libgfortran5 libgomp1 267s libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 267s liblapack3 liblcms2-2 liblerc4 liblog4j1.2-java libmpj-java libopenjp2-7 267s libpcsclite1 libpixman-1-0 libpython3.13-minimal libpython3.13-stdlib 267s libraqm0 libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 267s libxcb-render0 libxcb-shm0 libxrender1 openjdk-17-jre-headless prodigal 267s python3-all python3-biopython python3-cairo python3-dateutil 267s python3-freetype python3-numpy python3-pandas python3-pandas-lib python3-pil 267s python3-reportlab python3-rlpycairo python3-six python3-tz python3.13 267s python3.13-minimal quilt sgml-base w3c-sgml-lib x11-common xfonts-encodings 267s xfonts-utils xml-core 267s Suggested packages: 267s fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre autopoint gettext-doc 267s libasprintf-dev libgettextpo-dev hmmer-doc default-jre liblcms2-utils 267s liblog4j1.2-java-doc libmail-java pcscd libnss-mdns fonts-dejavu-extra 267s fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei 267s | fonts-wqy-zenhei fonts-indic python3-tk bwa clustalo clustalw dialign dssp 267s emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb 267s python3-matplotlib python3-mmtf python3-rdflib python3-psycopg2 267s python3-scipy raxml samtools t-coffee wise gcc gfortran python-numpy-doc 267s python3-dev python3-pytest python-pandas-doc python3-statsmodels 267s python-pil-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc 267s rl-accel rl-renderpm python3.13-venv python3.13-doc binfmt-support 267s default-mta | mail-transport-agent graphviz procmail sgml-base-doc debhelper 267s Recommended packages: 267s pigz libcups2t64 libasound2t64 python-biopython-doc ncbi-blast+ 267s python3-scipy python3-matplotlib python3-bottleneck python3-numexpr 267s python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml 267s python3-tables python3-olefile fonts-dejavu-extra 267s The following NEW packages will be installed: 267s autopkgtest-satdep bbmap busco ca-certificates-java diffstat 267s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 267s gettext hmmer java-common libapache-pom-java libblas3 libcairo2 267s libcommons-cli-java libcommons-codec-java libcommons-io-java 267s libcommons-parent-java libdeflate0 libdivsufsort3 libfontconfig1 libfontenc1 267s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 267s libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblerc4 liblog4j1.2-java 267s libmpj-java libopenjp2-7 libpcsclite1 libpixman-1-0 libpython3.13-minimal 267s libpython3.13-stdlib libraqm0 libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 267s libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 openjdk-17-jre-headless 267s prodigal python3-all python3-biopython python3-cairo python3-dateutil 267s python3-freetype python3-numpy python3-pandas python3-pandas-lib python3-pil 267s python3-reportlab python3-rlpycairo python3-six python3-tz python3.13 267s python3.13-minimal quilt sgml-base w3c-sgml-lib x11-common xfonts-encodings 267s xfonts-utils xml-core 267s 0 upgraded, 74 newly installed, 0 to remove and 0 not upgraded. 267s Need to get 103 MB/103 MB of archives. 267s After this operation, 384 MB of additional disk space will be used. 267s Get:1 /tmp/autopkgtest.vfgXQN/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [724 B] 291s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB] 341s Ign:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 341s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.0-2 [2100 kB] 342s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 sgml-base all 1.31 [11.4 kB] 342s Get:5 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcommons-cli-java all 1.6.0-1 [59.9 kB] 342s Get:6 http://ftpmaster.internal/ubuntu plucky/universe arm64 libapache-pom-java all 33-2 [5874 B] 342s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcommons-parent-java all 56-1 [10.7 kB] 342s Get:8 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcommons-codec-java all 1.17.1-1 [302 kB] 342s Get:9 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcommons-io-java all 2.17.0-1 [457 kB] 342s Get:10 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblog4j1.2-java all 1.2.17-11 [439 kB] 342s Get:11 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmpj-java all 0.44+dfsg-4 [443 kB] 342s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 ca-certificates-java all 20240118 [11.6 kB] 342s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 java-common all 0.76 [6852 B] 342s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 342s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu2 [163 kB] 342s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 342s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcsclite1 arm64 2.3.0-1 [24.4 kB] 342s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 openjdk-17-jre-headless arm64 17.0.13+11-2build1 [47.4 MB] 343s Get:19 http://ftpmaster.internal/ubuntu plucky/universe arm64 bbmap all 39.09+dfsg-1 [10.1 MB] 344s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-six all 1.16.0-7 [13.1 kB] 344s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-2 [80.3 kB] 344s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 344s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB] 344s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 344s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB] 344s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tz all 2024.1-2 [31.4 kB] 344s Get:27 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas-lib arm64 2.2.3+dfsg-5 [4422 kB] 344s Get:28 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas all 2.2.3+dfsg-5 [3112 kB] 344s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB] 344s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 344s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libopenjp2-7 arm64 2.5.0-2ubuntu1 [182 kB] 344s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 344s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.0.1-1 [487 kB] 344s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libraqm0 arm64 0.10.1-1build1 [14.7 kB] 344s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.22-1 [46.2 kB] 344s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 344s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu2 [154 kB] 344s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [16.3 kB] 344s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.4.0-0.1 [192 kB] 344s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 344s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [12.3 kB] 344s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpmux3 arm64 1.4.0-0.1 [25.1 kB] 344s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pil arm64 10.4.0-1ubuntu1 [456 kB] 344s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 344s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 344s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontenc1 arm64 1:1.1.8-1build1 [13.9 kB] 344s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 344s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 344s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 xfonts-utils arm64 1:7.7+7 [95.6 kB] 344s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-urw-base35 all 20200910-8 [11.0 MB] 344s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB] 344s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB] 344s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 344s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 344s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 344s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 344s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 344s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-cairo arm64 1.26.1-2 [121 kB] 344s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-freetype all 2.5.1-1 [92.3 kB] 345s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-rlpycairo all 0.3.0-3 [9130 B] 345s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-reportlab all 4.2.5-1 [1107 kB] 345s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 xml-core all 0.19 [20.3 kB] 345s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 w3c-sgml-lib all 1.3-3 [280 kB] 345s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-biopython arm64 1.84+dfsg-4 [1689 kB] 345s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 libdivsufsort3 arm64 2.0.1-6 [41.0 kB] 345s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 hmmer arm64 3.4+dfsg-2 [1107 kB] 345s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 prodigal arm64 1:2.6.3-6 [822 kB] 345s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 busco arm64 5.5.0-2 [295 kB] 345s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 diffstat arm64 1.66-1build1 [28.1 kB] 345s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 gettext arm64 0.22.5-2 [930 kB] 345s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [2073 kB] 345s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.0-2 [719 kB] 345s Get:73 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all arm64 3.12.7-1 [890 B] 345s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 quilt all 0.68-1 [439 kB] 345s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB] 345s Fetched 103 MB in 1min 18s (1314 kB/s) 345s Selecting previously unselected package libpython3.13-minimal:arm64. 345s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79931 files and directories currently installed.) 345s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_arm64.deb ... 345s Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ... 345s Selecting previously unselected package python3.13-minimal. 345s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_arm64.deb ... 345s Unpacking python3.13-minimal (3.13.0-2) ... 346s Selecting previously unselected package sgml-base. 346s Preparing to unpack .../02-sgml-base_1.31_all.deb ... 346s Unpacking sgml-base (1.31) ... 346s Selecting previously unselected package libcommons-cli-java. 346s Preparing to unpack .../03-libcommons-cli-java_1.6.0-1_all.deb ... 346s Unpacking libcommons-cli-java (1.6.0-1) ... 346s Selecting previously unselected package libapache-pom-java. 346s Preparing to unpack .../04-libapache-pom-java_33-2_all.deb ... 346s Unpacking libapache-pom-java (33-2) ... 346s Selecting previously unselected package libcommons-parent-java. 346s Preparing to unpack .../05-libcommons-parent-java_56-1_all.deb ... 346s Unpacking libcommons-parent-java (56-1) ... 346s Selecting previously unselected package libcommons-codec-java. 346s Preparing to unpack .../06-libcommons-codec-java_1.17.1-1_all.deb ... 346s Unpacking libcommons-codec-java (1.17.1-1) ... 346s Selecting previously unselected package libcommons-io-java. 346s Preparing to unpack .../07-libcommons-io-java_2.17.0-1_all.deb ... 346s Unpacking libcommons-io-java (2.17.0-1) ... 346s Selecting previously unselected package liblog4j1.2-java. 346s Preparing to unpack .../08-liblog4j1.2-java_1.2.17-11_all.deb ... 346s Unpacking liblog4j1.2-java (1.2.17-11) ... 346s Selecting previously unselected package libmpj-java. 346s Preparing to unpack .../09-libmpj-java_0.44+dfsg-4_all.deb ... 346s Unpacking libmpj-java (0.44+dfsg-4) ... 346s Selecting previously unselected package ca-certificates-java. 346s Preparing to unpack .../10-ca-certificates-java_20240118_all.deb ... 346s Unpacking ca-certificates-java (20240118) ... 346s Selecting previously unselected package java-common. 346s Preparing to unpack .../11-java-common_0.76_all.deb ... 346s Unpacking java-common (0.76) ... 346s Selecting previously unselected package liblcms2-2:arm64. 346s Preparing to unpack .../12-liblcms2-2_2.16-2_arm64.deb ... 346s Unpacking liblcms2-2:arm64 (2.16-2) ... 346s Selecting previously unselected package libjpeg-turbo8:arm64. 346s Preparing to unpack .../13-libjpeg-turbo8_2.1.5-2ubuntu2_arm64.deb ... 346s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ... 346s Selecting previously unselected package libjpeg8:arm64. 346s Preparing to unpack .../14-libjpeg8_8c-2ubuntu11_arm64.deb ... 346s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 346s Selecting previously unselected package libpcsclite1:arm64. 346s Preparing to unpack .../15-libpcsclite1_2.3.0-1_arm64.deb ... 346s Unpacking libpcsclite1:arm64 (2.3.0-1) ... 346s Selecting previously unselected package openjdk-17-jre-headless:arm64. 346s Preparing to unpack .../16-openjdk-17-jre-headless_17.0.13+11-2build1_arm64.deb ... 346s Unpacking openjdk-17-jre-headless:arm64 (17.0.13+11-2build1) ... 347s Selecting previously unselected package bbmap. 347s Preparing to unpack .../17-bbmap_39.09+dfsg-1_all.deb ... 347s Unpacking bbmap (39.09+dfsg-1) ... 348s Selecting previously unselected package python3-six. 348s Preparing to unpack .../18-python3-six_1.16.0-7_all.deb ... 348s Unpacking python3-six (1.16.0-7) ... 348s Selecting previously unselected package python3-dateutil. 348s Preparing to unpack .../19-python3-dateutil_2.9.0-2_all.deb ... 348s Unpacking python3-dateutil (2.9.0-2) ... 348s Selecting previously unselected package libblas3:arm64. 348s Preparing to unpack .../20-libblas3_3.12.0-3build2_arm64.deb ... 348s Unpacking libblas3:arm64 (3.12.0-3build2) ... 348s Selecting previously unselected package libgfortran5:arm64. 348s Preparing to unpack .../21-libgfortran5_14.2.0-8ubuntu1_arm64.deb ... 348s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ... 348s Selecting previously unselected package liblapack3:arm64. 348s Preparing to unpack .../22-liblapack3_3.12.0-3build2_arm64.deb ... 348s Unpacking liblapack3:arm64 (3.12.0-3build2) ... 348s Selecting previously unselected package python3-numpy. 348s Preparing to unpack .../23-python3-numpy_1%3a1.26.4+ds-11build1_arm64.deb ... 348s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 348s Selecting previously unselected package python3-tz. 349s Preparing to unpack .../24-python3-tz_2024.1-2_all.deb ... 349s Unpacking python3-tz (2024.1-2) ... 349s Selecting previously unselected package python3-pandas-lib:arm64. 349s Preparing to unpack .../25-python3-pandas-lib_2.2.3+dfsg-5_arm64.deb ... 349s Unpacking python3-pandas-lib:arm64 (2.2.3+dfsg-5) ... 349s Selecting previously unselected package python3-pandas. 349s Preparing to unpack .../26-python3-pandas_2.2.3+dfsg-5_all.deb ... 349s Unpacking python3-pandas (2.2.3+dfsg-5) ... 349s Selecting previously unselected package libgomp1:arm64. 349s Preparing to unpack .../27-libgomp1_14.2.0-8ubuntu1_arm64.deb ... 349s Unpacking libgomp1:arm64 (14.2.0-8ubuntu1) ... 349s Selecting previously unselected package libimagequant0:arm64. 349s Preparing to unpack .../28-libimagequant0_2.18.0-1build1_arm64.deb ... 349s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 349s Selecting previously unselected package libopenjp2-7:arm64. 349s Preparing to unpack .../29-libopenjp2-7_2.5.0-2ubuntu1_arm64.deb ... 349s Unpacking libopenjp2-7:arm64 (2.5.0-2ubuntu1) ... 349s Selecting previously unselected package libgraphite2-3:arm64. 349s Preparing to unpack .../30-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 349s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 349s Selecting previously unselected package libharfbuzz0b:arm64. 349s Preparing to unpack .../31-libharfbuzz0b_10.0.1-1_arm64.deb ... 349s Unpacking libharfbuzz0b:arm64 (10.0.1-1) ... 349s Selecting previously unselected package libraqm0:arm64. 349s Preparing to unpack .../32-libraqm0_0.10.1-1build1_arm64.deb ... 349s Unpacking libraqm0:arm64 (0.10.1-1build1) ... 349s Selecting previously unselected package libdeflate0:arm64. 349s Preparing to unpack .../33-libdeflate0_1.22-1_arm64.deb ... 349s Unpacking libdeflate0:arm64 (1.22-1) ... 349s Selecting previously unselected package libjbig0:arm64. 349s Preparing to unpack .../34-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 349s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 349s Selecting previously unselected package liblerc4:arm64. 349s Preparing to unpack .../35-liblerc4_4.0.0+ds-4ubuntu2_arm64.deb ... 349s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu2) ... 349s Selecting previously unselected package libsharpyuv0:arm64. 349s Preparing to unpack .../36-libsharpyuv0_1.4.0-0.1_arm64.deb ... 349s Unpacking libsharpyuv0:arm64 (1.4.0-0.1) ... 349s Selecting previously unselected package libwebp7:arm64. 349s Preparing to unpack .../37-libwebp7_1.4.0-0.1_arm64.deb ... 349s Unpacking libwebp7:arm64 (1.4.0-0.1) ... 349s Selecting previously unselected package libtiff6:arm64. 349s Preparing to unpack .../38-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 349s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 349s Selecting previously unselected package libwebpdemux2:arm64. 349s Preparing to unpack .../39-libwebpdemux2_1.4.0-0.1_arm64.deb ... 349s Unpacking libwebpdemux2:arm64 (1.4.0-0.1) ... 349s Selecting previously unselected package libwebpmux3:arm64. 349s Preparing to unpack .../40-libwebpmux3_1.4.0-0.1_arm64.deb ... 349s Unpacking libwebpmux3:arm64 (1.4.0-0.1) ... 349s Selecting previously unselected package python3-pil:arm64. 349s Preparing to unpack .../41-python3-pil_10.4.0-1ubuntu1_arm64.deb ... 349s Unpacking python3-pil:arm64 (10.4.0-1ubuntu1) ... 349s Selecting previously unselected package fonts-dejavu-mono. 349s Preparing to unpack .../42-fonts-dejavu-mono_2.37-8_all.deb ... 349s Unpacking fonts-dejavu-mono (2.37-8) ... 349s Selecting previously unselected package fonts-dejavu-core. 349s Preparing to unpack .../43-fonts-dejavu-core_2.37-8_all.deb ... 349s Unpacking fonts-dejavu-core (2.37-8) ... 349s Selecting previously unselected package libfontenc1:arm64. 349s Preparing to unpack .../44-libfontenc1_1%3a1.1.8-1build1_arm64.deb ... 349s Unpacking libfontenc1:arm64 (1:1.1.8-1build1) ... 349s Selecting previously unselected package x11-common. 349s Preparing to unpack .../45-x11-common_1%3a7.7+23ubuntu3_all.deb ... 349s Unpacking x11-common (1:7.7+23ubuntu3) ... 349s Selecting previously unselected package xfonts-encodings. 349s Preparing to unpack .../46-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 349s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 349s Selecting previously unselected package xfonts-utils. 349s Preparing to unpack .../47-xfonts-utils_1%3a7.7+7_arm64.deb ... 349s Unpacking xfonts-utils (1:7.7+7) ... 350s Selecting previously unselected package fonts-urw-base35. 350s Preparing to unpack .../48-fonts-urw-base35_20200910-8_all.deb ... 350s Unpacking fonts-urw-base35 (20200910-8) ... 350s Selecting previously unselected package fontconfig-config. 350s Preparing to unpack .../49-fontconfig-config_2.15.0-1.1ubuntu2_arm64.deb ... 350s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 350s Selecting previously unselected package libfontconfig1:arm64. 350s Preparing to unpack .../50-libfontconfig1_2.15.0-1.1ubuntu2_arm64.deb ... 350s Unpacking libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... 350s Selecting previously unselected package libpixman-1-0:arm64. 350s Preparing to unpack .../51-libpixman-1-0_0.44.0-3_arm64.deb ... 350s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 350s Selecting previously unselected package libxcb-render0:arm64. 350s Preparing to unpack .../52-libxcb-render0_1.17.0-2_arm64.deb ... 350s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 350s Selecting previously unselected package libxcb-shm0:arm64. 350s Preparing to unpack .../53-libxcb-shm0_1.17.0-2_arm64.deb ... 350s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 350s Selecting previously unselected package libxrender1:arm64. 350s Preparing to unpack .../54-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 350s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 350s Selecting previously unselected package libcairo2:arm64. 350s Preparing to unpack .../55-libcairo2_1.18.2-2_arm64.deb ... 350s Unpacking libcairo2:arm64 (1.18.2-2) ... 350s Selecting previously unselected package python3-cairo. 350s Preparing to unpack .../56-python3-cairo_1.26.1-2_arm64.deb ... 350s Unpacking python3-cairo (1.26.1-2) ... 350s Selecting previously unselected package python3-freetype. 350s Preparing to unpack .../57-python3-freetype_2.5.1-1_all.deb ... 350s Unpacking python3-freetype (2.5.1-1) ... 351s Selecting previously unselected package python3-rlpycairo. 351s Preparing to unpack .../58-python3-rlpycairo_0.3.0-3_all.deb ... 351s Unpacking python3-rlpycairo (0.3.0-3) ... 351s Selecting previously unselected package python3-reportlab. 351s Preparing to unpack .../59-python3-reportlab_4.2.5-1_all.deb ... 351s Unpacking python3-reportlab (4.2.5-1) ... 351s Selecting previously unselected package xml-core. 351s Preparing to unpack .../60-xml-core_0.19_all.deb ... 351s Unpacking xml-core (0.19) ... 351s Selecting previously unselected package w3c-sgml-lib. 351s Preparing to unpack .../61-w3c-sgml-lib_1.3-3_all.deb ... 351s Unpacking w3c-sgml-lib (1.3-3) ... 351s Selecting previously unselected package python3-biopython. 351s Preparing to unpack .../62-python3-biopython_1.84+dfsg-4_arm64.deb ... 351s Unpacking python3-biopython (1.84+dfsg-4) ... 351s Selecting previously unselected package libdivsufsort3:arm64. 351s Preparing to unpack .../63-libdivsufsort3_2.0.1-6_arm64.deb ... 351s Unpacking libdivsufsort3:arm64 (2.0.1-6) ... 351s Selecting previously unselected package hmmer. 351s Preparing to unpack .../64-hmmer_3.4+dfsg-2_arm64.deb ... 351s Unpacking hmmer (3.4+dfsg-2) ... 351s Selecting previously unselected package prodigal. 351s Preparing to unpack .../65-prodigal_1%3a2.6.3-6_arm64.deb ... 351s Unpacking prodigal (1:2.6.3-6) ... 351s Selecting previously unselected package busco. 351s Preparing to unpack .../66-busco_5.5.0-2_arm64.deb ... 351s Unpacking busco (5.5.0-2) ... 351s Selecting previously unselected package diffstat. 351s Preparing to unpack .../67-diffstat_1.66-1build1_arm64.deb ... 351s Unpacking diffstat (1.66-1build1) ... 351s Selecting previously unselected package gettext. 351s Preparing to unpack .../68-gettext_0.22.5-2_arm64.deb ... 351s Unpacking gettext (0.22.5-2) ... 351s Selecting previously unselected package libpython3.13-stdlib:arm64. 351s Preparing to unpack .../69-libpython3.13-stdlib_3.13.0-2_arm64.deb ... 351s Unpacking libpython3.13-stdlib:arm64 (3.13.0-2) ... 352s Selecting previously unselected package python3.13. 352s Preparing to unpack .../70-python3.13_3.13.0-2_arm64.deb ... 352s Unpacking python3.13 (3.13.0-2) ... 352s Selecting previously unselected package python3-all. 352s Preparing to unpack .../71-python3-all_3.12.7-1_arm64.deb ... 352s Unpacking python3-all (3.12.7-1) ... 352s Selecting previously unselected package quilt. 352s Preparing to unpack .../72-quilt_0.68-1_all.deb ... 352s Unpacking quilt (0.68-1) ... 352s Selecting previously unselected package autopkgtest-satdep. 352s Preparing to unpack .../73-1-autopkgtest-satdep.deb ... 352s Unpacking autopkgtest-satdep (0) ... 352s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 352s Setting up liblcms2-2:arm64 (2.16-2) ... 352s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 352s Setting up libsharpyuv0:arm64 (1.4.0-0.1) ... 352s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu2) ... 352s Setting up java-common (0.76) ... 352s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 352s Setting up libcommons-cli-java (1.6.0-1) ... 352s Setting up libxcb-render0:arm64 (1.17.0-2) ... 352s Setting up prodigal (1:2.6.3-6) ... 352s Setting up x11-common (1:7.7+23ubuntu3) ... 352s Setting up libdeflate0:arm64 (1.22-1) ... 352s Setting up liblog4j1.2-java (1.2.17-11) ... 352s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 352s Setting up libgomp1:arm64 (14.2.0-8ubuntu1) ... 352s Setting up python3-freetype (2.5.1-1) ... 353s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 353s Setting up python3-tz (2024.1-2) ... 353s Setting up python3-six (1.16.0-7) ... 353s Setting up libpython3.13-minimal:arm64 (3.13.0-2) ... 353s Setting up libfontenc1:arm64 (1:1.1.8-1build1) ... 353s Setting up libblas3:arm64 (3.12.0-3build2) ... 353s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 353s Setting up libapache-pom-java (33-2) ... 353s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 353s Setting up diffstat (1.66-1build1) ... 353s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 353s Setting up fonts-dejavu-mono (2.37-8) ... 353s Setting up fonts-dejavu-core (2.37-8) ... 353s Setting up libpcsclite1:arm64 (2.3.0-1) ... 353s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ... 353s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ... 353s Setting up libwebp7:arm64 (1.4.0-0.1) ... 353s Setting up libopenjp2-7:arm64 (2.5.0-2ubuntu1) ... 353s Setting up python3.13-minimal (3.13.0-2) ... 354s Setting up libharfbuzz0b:arm64 (10.0.1-1) ... 354s Setting up python3-dateutil (2.9.0-2) ... 354s Setting up sgml-base (1.31) ... 354s Setting up ca-certificates-java (20240118) ... 354s No JRE found. Skipping Java certificates setup. 354s Setting up libdivsufsort3:arm64 (2.0.1-6) ... 354s Setting up libwebpmux3:arm64 (1.4.0-0.1) ... 354s Setting up libpython3.13-stdlib:arm64 (3.13.0-2) ... 354s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 354s Setting up liblapack3:arm64 (3.12.0-3build2) ... 354s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 354s Setting up gettext (0.22.5-2) ... 354s Setting up python3.13 (3.13.0-2) ... 356s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 356s Setting up libwebpdemux2:arm64 (1.4.0-0.1) ... 356s Setting up libcommons-parent-java (56-1) ... 356s Setting up python3-all (3.12.7-1) ... 356s Setting up quilt (0.68-1) ... 356s Setting up xfonts-utils (1:7.7+7) ... 356s Setting up libraqm0:arm64 (0.10.1-1build1) ... 356s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 360s Setting up openjdk-17-jre-headless:arm64 (17.0.13+11-2build1) ... 360s update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode 360s update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 360s update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 360s update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 360s update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 360s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 360s Setting up xml-core (0.19) ... 361s Setting up hmmer (3.4+dfsg-2) ... 361s Setting up libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... 361s Setting up libcommons-codec-java (1.17.1-1) ... 361s Setting up libcommons-io-java (2.17.0-1) ... 361s Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-5) ... 361s Setting up fonts-urw-base35 (20200910-8) ... 361s Setting up libcairo2:arm64 (1.18.2-2) ... 361s Setting up libmpj-java (0.44+dfsg-4) ... 361s Setting up python3-pil:arm64 (10.4.0-1ubuntu1) ... 362s Setting up python3-pandas (2.2.3+dfsg-5) ... 374s Setting up python3-cairo (1.26.1-2) ... 374s Setting up python3-rlpycairo (0.3.0-3) ... 375s Setting up python3-reportlab (4.2.5-1) ... 376s Processing triggers for libc-bin (2.40-1ubuntu3) ... 376s Processing triggers for systemd (256.5-2ubuntu4) ... 376s Processing triggers for man-db (2.12.1-3) ... 377s Processing triggers for install-info (7.1.1-1) ... 377s Processing triggers for ca-certificates-java (20240118) ... 378s Adding debian:ACCVRAIZ1.pem 378s Adding debian:AC_RAIZ_FNMT-RCM.pem 378s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 378s Adding debian:ANF_Secure_Server_Root_CA.pem 378s Adding debian:Actalis_Authentication_Root_CA.pem 378s Adding debian:AffirmTrust_Commercial.pem 378s Adding debian:AffirmTrust_Networking.pem 378s Adding debian:AffirmTrust_Premium.pem 378s Adding debian:AffirmTrust_Premium_ECC.pem 378s Adding debian:Amazon_Root_CA_1.pem 378s Adding debian:Amazon_Root_CA_2.pem 378s Adding debian:Amazon_Root_CA_3.pem 378s Adding debian:Amazon_Root_CA_4.pem 378s Adding debian:Atos_TrustedRoot_2011.pem 378s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 378s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 378s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 378s Adding debian:BJCA_Global_Root_CA1.pem 378s Adding debian:BJCA_Global_Root_CA2.pem 378s Adding debian:Baltimore_CyberTrust_Root.pem 378s Adding debian:Buypass_Class_2_Root_CA.pem 378s Adding debian:Buypass_Class_3_Root_CA.pem 378s Adding debian:CA_Disig_Root_R2.pem 378s Adding debian:CFCA_EV_ROOT.pem 378s Adding debian:COMODO_Certification_Authority.pem 378s Adding debian:COMODO_ECC_Certification_Authority.pem 378s Adding debian:COMODO_RSA_Certification_Authority.pem 378s Adding debian:Certainly_Root_E1.pem 378s Adding debian:Certainly_Root_R1.pem 378s Adding debian:Certigna.pem 378s Adding debian:Certigna_Root_CA.pem 378s Adding debian:Certum_EC-384_CA.pem 378s Adding debian:Certum_Trusted_Network_CA.pem 378s Adding debian:Certum_Trusted_Network_CA_2.pem 378s Adding debian:Certum_Trusted_Root_CA.pem 378s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 378s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 378s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 378s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 378s Adding debian:Comodo_AAA_Services_root.pem 378s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 378s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 378s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 378s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 378s Adding debian:DigiCert_Assured_ID_Root_CA.pem 378s Adding debian:DigiCert_Assured_ID_Root_G2.pem 378s Adding debian:DigiCert_Assured_ID_Root_G3.pem 378s Adding debian:DigiCert_Global_Root_CA.pem 378s Adding debian:DigiCert_Global_Root_G2.pem 378s Adding debian:DigiCert_Global_Root_G3.pem 378s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 378s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 378s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 378s Adding debian:DigiCert_Trusted_Root_G4.pem 378s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 378s Adding debian:Entrust_Root_Certification_Authority.pem 378s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 378s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 378s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 378s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 378s Adding debian:GLOBALTRUST_2020.pem 378s Adding debian:GTS_Root_R1.pem 378s Adding debian:GTS_Root_R2.pem 378s Adding debian:GTS_Root_R3.pem 378s Adding debian:GTS_Root_R4.pem 378s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 378s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 378s Adding debian:GlobalSign_Root_CA.pem 378s Adding debian:GlobalSign_Root_CA_-_R3.pem 378s Adding debian:GlobalSign_Root_CA_-_R6.pem 378s Adding debian:GlobalSign_Root_E46.pem 378s Adding debian:GlobalSign_Root_R46.pem 378s Adding debian:Go_Daddy_Class_2_CA.pem 378s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 378s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 378s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 378s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 378s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 378s Adding debian:HiPKI_Root_CA_-_G1.pem 378s Adding debian:Hongkong_Post_Root_CA_3.pem 378s Adding debian:ISRG_Root_X1.pem 378s Adding debian:ISRG_Root_X2.pem 378s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 378s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 378s Adding debian:Izenpe.com.pem 378s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 378s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 378s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 378s Adding debian:NAVER_Global_Root_Certification_Authority.pem 378s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 378s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 378s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 378s Adding debian:QuoVadis_Root_CA_1_G3.pem 378s Adding debian:QuoVadis_Root_CA_2.pem 378s Adding debian:QuoVadis_Root_CA_2_G3.pem 378s Adding debian:QuoVadis_Root_CA_3.pem 378s Adding debian:QuoVadis_Root_CA_3_G3.pem 378s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 378s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 378s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 378s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 378s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 378s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 378s Adding debian:SZAFIR_ROOT_CA2.pem 378s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 378s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 378s Adding debian:SecureSign_RootCA11.pem 378s Adding debian:SecureTrust_CA.pem 378s Adding debian:Secure_Global_CA.pem 378s Adding debian:Security_Communication_ECC_RootCA1.pem 378s Adding debian:Security_Communication_RootCA2.pem 378s Adding debian:Security_Communication_RootCA3.pem 378s Adding debian:Security_Communication_Root_CA.pem 378s Adding debian:Starfield_Class_2_CA.pem 378s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 378s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 378s Adding debian:SwissSign_Gold_CA_-_G2.pem 378s Adding debian:SwissSign_Silver_CA_-_G2.pem 378s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 378s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 378s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 378s Adding debian:TWCA_Global_Root_CA.pem 378s Adding debian:TWCA_Root_Certification_Authority.pem 378s Adding debian:TeliaSonera_Root_CA_v1.pem 378s Adding debian:Telia_Root_CA_v2.pem 378s Adding debian:TrustAsia_Global_Root_CA_G3.pem 378s Adding debian:TrustAsia_Global_Root_CA_G4.pem 378s Adding debian:Trustwave_Global_Certification_Authority.pem 378s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 378s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 378s Adding debian:TunTrust_Root_CA.pem 378s Adding debian:UCA_Extended_Validation_Root.pem 378s Adding debian:UCA_Global_G2_Root.pem 378s Adding debian:USERTrust_ECC_Certification_Authority.pem 378s Adding debian:USERTrust_RSA_Certification_Authority.pem 378s Adding debian:XRamp_Global_CA_Root.pem 378s Adding debian:certSIGN_ROOT_CA.pem 378s Adding debian:certSIGN_Root_CA_G2.pem 378s Adding debian:e-Szigno_Root_CA_2017.pem 378s Adding debian:ePKI_Root_Certification_Authority.pem 378s Adding debian:emSign_ECC_Root_CA_-_C3.pem 378s Adding debian:emSign_ECC_Root_CA_-_G3.pem 378s Adding debian:emSign_Root_CA_-_C1.pem 378s Adding debian:emSign_Root_CA_-_G1.pem 378s Adding debian:vTrus_ECC_Root_CA.pem 378s Adding debian:vTrus_Root_CA.pem 378s done. 378s Setting up bbmap (39.09+dfsg-1) ... 378s Processing triggers for sgml-base (1.31) ... 378s Setting up w3c-sgml-lib (1.3-3) ... 406s Setting up python3-biopython (1.84+dfsg-4) ... 409s Setting up busco (5.5.0-2) ... 409s /usr/lib/python3/dist-packages/busco/BuscoPlacer.py:211: SyntaxWarning: invalid escape sequence '\[' 409s "[^0-9][0-9]*:[0-9]*[^0-9]{0,1}[0-9]*[^0-9]{0,2}[0-9]*\[%s\]" 409s /usr/lib/python3/dist-packages/busco/busco_tools/miniprot.py:200: SyntaxWarning: invalid escape sequence '\*' 409s self.ata_seq = re.sub("\*", "", sta_seq.upper()) 409s /usr/lib/python3/dist-packages/busco/BuscoPlacer.py:211: SyntaxWarning: invalid escape sequence '\[' 409s "[^0-9][0-9]*:[0-9]*[^0-9]{0,1}[0-9]*[^0-9]{0,2}[0-9]*\[%s\]" 409s /usr/lib/python3/dist-packages/busco/busco_tools/miniprot.py:200: SyntaxWarning: invalid escape sequence '\*' 409s self.ata_seq = re.sub("\*", "", sta_seq.upper()) 409s Setting up autopkgtest-satdep (0) ... 413s (Reading database ... 86761 files and directories currently installed.) 413s Removing autopkgtest-satdep (0) ... 414s autopkgtest [08:58:33]: test run-unit-test: [----------------------- 415s File series fully applied, ends at patch debian/patches/find-bbmap-instead-of-bbtools.patch 415s Testing with python3.13 in /tmp/autopkgtest.vfgXQN/autopkgtest_tmp: 415s unittest_runner (unittest.loader._FailedTest.unittest_runner) ... ERROR 415s 415s ====================================================================== 415s ERROR: unittest_runner (unittest.loader._FailedTest.unittest_runner) 415s ---------------------------------------------------------------------- 415s ImportError: Failed to import test module: unittest_runner 415s Traceback (most recent call last): 415s File "/usr/lib/python3.13/unittest/loader.py", line 137, in loadTestsFromName 415s module = __import__(module_name) 415s File "/tmp/autopkgtest.vfgXQN/autopkgtest_tmp/tests/unittest_runner.py", line 2, in 415s from tests.unittests import run_BUSCO_unittests 415s File "/tmp/autopkgtest.vfgXQN/autopkgtest_tmp/tests/unittests/run_BUSCO_unittests.py", line 2, in 415s from busco import run_BUSCO 415s File "/usr/lib/python3/dist-packages/busco/run_BUSCO.py", line 25, in 415s from busco.BuscoRunner import AnalysisRunner, BatchRunner, SingleRunner 415s File "/usr/lib/python3/dist-packages/busco/BuscoRunner.py", line 2, in 415s from busco.analysis.BuscoAnalysis import BuscoAnalysis 415s File "/usr/lib/python3/dist-packages/busco/analysis/BuscoAnalysis.py", line 14, in 415s from busco.BuscoConfig import BaseConfig, BuscoConfigAuto 415s File "/usr/lib/python3/dist-packages/busco/BuscoConfig.py", line 9, in 415s from busco.BuscoDownloadManager import BuscoDownloadManager 415s File "/usr/lib/python3/dist-packages/busco/BuscoDownloadManager.py", line 22, in 415s import pandas as pd 415s File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 19, in 415s raise ImportError( 415s "Unable to import required dependencies:\n" + "\n".join(_missing_dependencies) 415s ) 415s ImportError: Unable to import required dependencies: 415s numpy: Error importing numpy: you should not try to import numpy from 415s its source directory; please exit the numpy source tree, and relaunch 415s your python interpreter from there. 415s 415s 415s ---------------------------------------------------------------------- 415s Ran 1 test in 0.000s 415s 415s FAILED (errors=1) 415s autopkgtest [08:58:34]: test run-unit-test: -----------------------] 416s autopkgtest [08:58:35]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 416s run-unit-test FAIL non-zero exit status 1 417s autopkgtest [08:58:36]: test run-busco-analysis: preparing testbed 505s autopkgtest [09:00:04]: testbed dpkg architecture: arm64 506s autopkgtest [09:00:05]: testbed apt version: 2.9.8 506s autopkgtest [09:00:05]: @@@@@@@@@@@@@@@@@@@@ test bed setup 506s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 507s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 507s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 507s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 507s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 507s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB] 507s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 507s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB] 507s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB] 507s Fetched 1793 kB in 1s (2081 kB/s) 507s Reading package lists... 510s Reading package lists... 510s Building dependency tree... 510s Reading state information... 510s Calculating upgrade... 511s The following NEW packages will be installed: 511s python3.13-gdbm 511s The following packages will be upgraded: 511s libpython3-stdlib python3 python3-gdbm python3-minimal 511s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 511s Need to get 101 kB of archives. 511s After this operation, 141 kB of additional disk space will be used. 511s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB] 511s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB] 511s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB] 511s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB] 511s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B] 512s Fetched 101 kB in 0s (285 kB/s) 512s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 512s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ... 512s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 512s Setting up python3-minimal (3.12.7-1) ... 512s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 512s Preparing to unpack .../python3_3.12.7-1_arm64.deb ... 512s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 512s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ... 512s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 512s Selecting previously unselected package python3.13-gdbm. 512s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ... 512s Unpacking python3.13-gdbm (3.13.0-2) ... 513s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ... 513s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 513s Setting up python3.13-gdbm (3.13.0-2) ... 513s Setting up libpython3-stdlib:arm64 (3.12.7-1) ... 513s Setting up python3 (3.12.7-1) ... 513s Setting up python3-gdbm:arm64 (3.12.7-1) ... 513s Processing triggers for man-db (2.12.1-3) ... 514s Reading package lists... 514s Building dependency tree... 514s Reading state information... 515s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 516s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 516s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 516s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 516s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 517s Reading package lists... 517s Reading package lists... 517s Building dependency tree... 517s Reading state information... 517s Calculating upgrade... 518s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 518s Reading package lists... 518s Building dependency tree... 518s Reading state information... 519s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 523s Reading package lists... 524s Building dependency tree... 524s Reading state information... 524s Starting pkgProblemResolver with broken count: 0 525s Starting 2 pkgProblemResolver with broken count: 0 525s Done 526s The following additional packages will be installed: 526s bbmap busco ca-certificates-java fontconfig-config fonts-dejavu-core 526s fonts-dejavu-mono fonts-urw-base35 hmmer java-common libapache-pom-java 526s libblas3 libcairo2 libcommons-cli-java libcommons-codec-java 526s libcommons-io-java libcommons-parent-java libdeflate0 libdivsufsort3 526s libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3 526s libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 526s liblcms2-2 liblerc4 liblog4j1.2-java libmpj-java libopenjp2-7 libpcsclite1 526s libpixman-1-0 libpython3.13-minimal libpython3.13-stdlib libraqm0 526s libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 526s libxcb-shm0 libxrender1 openjdk-17-jre-headless prodigal python3-all 526s python3-biopython python3-cairo python3-dateutil python3-freetype 526s python3-numpy python3-pandas python3-pandas-lib python3-pil 526s python3-reportlab python3-rlpycairo python3-six python3-tz python3.13 526s python3.13-minimal sgml-base w3c-sgml-lib x11-common xfonts-encodings 526s xfonts-utils xml-core 526s Suggested packages: 526s fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre hmmer-doc default-jre 526s liblcms2-utils liblog4j1.2-java-doc libmail-java pcscd libnss-mdns 526s fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho 526s fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic python3-tk bwa clustalo 526s clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank 526s probcons python3-mysqldb python3-matplotlib python3-mmtf python3-rdflib 526s python3-psycopg2 python3-scipy raxml samtools t-coffee wise gcc gfortran 526s python-numpy-doc python3-dev python3-pytest python-pandas-doc 526s python3-statsmodels python-pil-doc pdf-viewer python3-egenix-mxtexttools 526s python-reportlab-doc rl-accel rl-renderpm python3.13-venv python3.13-doc 526s binfmt-support sgml-base-doc debhelper 526s Recommended packages: 526s pigz libcups2t64 libasound2t64 python-biopython-doc ncbi-blast+ 526s python3-scipy python3-matplotlib python3-bottleneck python3-numexpr 526s python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml 526s python3-tables python3-olefile fonts-dejavu-extra 526s The following NEW packages will be installed: 526s autopkgtest-satdep bbmap busco ca-certificates-java fontconfig-config 526s fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 hmmer java-common 526s libapache-pom-java libblas3 libcairo2 libcommons-cli-java 526s libcommons-codec-java libcommons-io-java libcommons-parent-java libdeflate0 526s libdivsufsort3 libfontconfig1 libfontenc1 libgfortran5 libgomp1 526s libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 526s liblapack3 liblcms2-2 liblerc4 liblog4j1.2-java libmpj-java libopenjp2-7 526s libpcsclite1 libpixman-1-0 libpython3.13-minimal libpython3.13-stdlib 526s libraqm0 libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 526s libxcb-render0 libxcb-shm0 libxrender1 openjdk-17-jre-headless prodigal 526s python3-all python3-biopython python3-cairo python3-dateutil 526s python3-freetype python3-numpy python3-pandas python3-pandas-lib python3-pil 526s python3-reportlab python3-rlpycairo python3-six python3-tz python3.13 526s python3.13-minimal sgml-base w3c-sgml-lib x11-common xfonts-encodings 526s xfonts-utils xml-core 526s 0 upgraded, 71 newly installed, 0 to remove and 0 not upgraded. 526s Need to get 101 MB/101 MB of archives. 526s After this operation, 379 MB of additional disk space will be used. 526s Get:1 /tmp/autopkgtest.vfgXQN/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [712 B] 526s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB] 526s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.0-2 [2100 kB] 526s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 sgml-base all 1.31 [11.4 kB] 526s Get:5 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcommons-cli-java all 1.6.0-1 [59.9 kB] 526s Get:6 http://ftpmaster.internal/ubuntu plucky/universe arm64 libapache-pom-java all 33-2 [5874 B] 526s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcommons-parent-java all 56-1 [10.7 kB] 526s Get:8 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcommons-codec-java all 1.17.1-1 [302 kB] 526s Get:9 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcommons-io-java all 2.17.0-1 [457 kB] 526s Get:10 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblog4j1.2-java all 1.2.17-11 [439 kB] 526s Get:11 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmpj-java all 0.44+dfsg-4 [443 kB] 526s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 ca-certificates-java all 20240118 [11.6 kB] 526s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 java-common all 0.76 [6852 B] 526s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 526s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu2 [163 kB] 526s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 526s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcsclite1 arm64 2.3.0-1 [24.4 kB] 526s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 openjdk-17-jre-headless arm64 17.0.13+11-2build1 [47.4 MB] 528s Get:19 http://ftpmaster.internal/ubuntu plucky/universe arm64 bbmap all 39.09+dfsg-1 [10.1 MB] 528s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-six all 1.16.0-7 [13.1 kB] 528s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-2 [80.3 kB] 528s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 528s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB] 528s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 528s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB] 528s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tz all 2024.1-2 [31.4 kB] 528s Get:27 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas-lib arm64 2.2.3+dfsg-5 [4422 kB] 528s Get:28 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas all 2.2.3+dfsg-5 [3112 kB] 528s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB] 528s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 528s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libopenjp2-7 arm64 2.5.0-2ubuntu1 [182 kB] 528s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 528s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.0.1-1 [487 kB] 529s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libraqm0 arm64 0.10.1-1build1 [14.7 kB] 529s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.22-1 [46.2 kB] 529s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 529s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu2 [154 kB] 529s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [16.3 kB] 529s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.4.0-0.1 [192 kB] 529s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 529s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [12.3 kB] 529s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpmux3 arm64 1.4.0-0.1 [25.1 kB] 529s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-pil arm64 10.4.0-1ubuntu1 [456 kB] 529s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 529s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 529s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontenc1 arm64 1:1.1.8-1build1 [13.9 kB] 529s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 529s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 529s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 xfonts-utils arm64 1:7.7+7 [95.6 kB] 529s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-urw-base35 all 20200910-8 [11.0 MB] 529s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB] 529s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB] 529s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 529s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 529s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 529s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 529s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 529s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-cairo arm64 1.26.1-2 [121 kB] 529s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-freetype all 2.5.1-1 [92.3 kB] 529s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-rlpycairo all 0.3.0-3 [9130 B] 529s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-reportlab all 4.2.5-1 [1107 kB] 529s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 xml-core all 0.19 [20.3 kB] 529s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 w3c-sgml-lib all 1.3-3 [280 kB] 529s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-biopython arm64 1.84+dfsg-4 [1689 kB] 530s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 libdivsufsort3 arm64 2.0.1-6 [41.0 kB] 530s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 hmmer arm64 3.4+dfsg-2 [1107 kB] 530s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 prodigal arm64 1:2.6.3-6 [822 kB] 530s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 busco arm64 5.5.0-2 [295 kB] 530s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [2073 kB] 530s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.0-2 [719 kB] 530s Get:71 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all arm64 3.12.7-1 [890 B] 530s Fetched 101 MB in 4s (24.7 MB/s) 530s Selecting previously unselected package libpython3.13-minimal:arm64. 530s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79931 files and directories currently installed.) 530s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_arm64.deb ... 530s Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ... 530s Selecting previously unselected package python3.13-minimal. 530s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_arm64.deb ... 530s Unpacking python3.13-minimal (3.13.0-2) ... 530s Selecting previously unselected package sgml-base. 530s Preparing to unpack .../02-sgml-base_1.31_all.deb ... 530s Unpacking sgml-base (1.31) ... 530s Selecting previously unselected package libcommons-cli-java. 530s Preparing to unpack .../03-libcommons-cli-java_1.6.0-1_all.deb ... 530s Unpacking libcommons-cli-java (1.6.0-1) ... 530s Selecting previously unselected package libapache-pom-java. 530s Preparing to unpack .../04-libapache-pom-java_33-2_all.deb ... 530s Unpacking libapache-pom-java (33-2) ... 531s Selecting previously unselected package libcommons-parent-java. 531s Preparing to unpack .../05-libcommons-parent-java_56-1_all.deb ... 531s Unpacking libcommons-parent-java (56-1) ... 531s Selecting previously unselected package libcommons-codec-java. 531s Preparing to unpack .../06-libcommons-codec-java_1.17.1-1_all.deb ... 531s Unpacking libcommons-codec-java (1.17.1-1) ... 531s Selecting previously unselected package libcommons-io-java. 531s Preparing to unpack .../07-libcommons-io-java_2.17.0-1_all.deb ... 531s Unpacking libcommons-io-java (2.17.0-1) ... 531s Selecting previously unselected package liblog4j1.2-java. 531s Preparing to unpack .../08-liblog4j1.2-java_1.2.17-11_all.deb ... 531s Unpacking liblog4j1.2-java (1.2.17-11) ... 531s Selecting previously unselected package libmpj-java. 531s Preparing to unpack .../09-libmpj-java_0.44+dfsg-4_all.deb ... 531s Unpacking libmpj-java (0.44+dfsg-4) ... 531s Selecting previously unselected package ca-certificates-java. 531s Preparing to unpack .../10-ca-certificates-java_20240118_all.deb ... 531s Unpacking ca-certificates-java (20240118) ... 531s Selecting previously unselected package java-common. 531s Preparing to unpack .../11-java-common_0.76_all.deb ... 531s Unpacking java-common (0.76) ... 531s Selecting previously unselected package liblcms2-2:arm64. 531s Preparing to unpack .../12-liblcms2-2_2.16-2_arm64.deb ... 531s Unpacking liblcms2-2:arm64 (2.16-2) ... 531s Selecting previously unselected package libjpeg-turbo8:arm64. 531s Preparing to unpack .../13-libjpeg-turbo8_2.1.5-2ubuntu2_arm64.deb ... 531s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ... 531s Selecting previously unselected package libjpeg8:arm64. 531s Preparing to unpack .../14-libjpeg8_8c-2ubuntu11_arm64.deb ... 531s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 531s Selecting previously unselected package libpcsclite1:arm64. 531s Preparing to unpack .../15-libpcsclite1_2.3.0-1_arm64.deb ... 531s Unpacking libpcsclite1:arm64 (2.3.0-1) ... 531s Selecting previously unselected package openjdk-17-jre-headless:arm64. 531s Preparing to unpack .../16-openjdk-17-jre-headless_17.0.13+11-2build1_arm64.deb ... 531s Unpacking openjdk-17-jre-headless:arm64 (17.0.13+11-2build1) ... 532s Selecting previously unselected package bbmap. 532s Preparing to unpack .../17-bbmap_39.09+dfsg-1_all.deb ... 532s Unpacking bbmap (39.09+dfsg-1) ... 532s Selecting previously unselected package python3-six. 532s Preparing to unpack .../18-python3-six_1.16.0-7_all.deb ... 532s Unpacking python3-six (1.16.0-7) ... 532s Selecting previously unselected package python3-dateutil. 532s Preparing to unpack .../19-python3-dateutil_2.9.0-2_all.deb ... 532s Unpacking python3-dateutil (2.9.0-2) ... 532s Selecting previously unselected package libblas3:arm64. 532s Preparing to unpack .../20-libblas3_3.12.0-3build2_arm64.deb ... 532s Unpacking libblas3:arm64 (3.12.0-3build2) ... 532s Selecting previously unselected package libgfortran5:arm64. 532s Preparing to unpack .../21-libgfortran5_14.2.0-8ubuntu1_arm64.deb ... 532s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ... 532s Selecting previously unselected package liblapack3:arm64. 532s Preparing to unpack .../22-liblapack3_3.12.0-3build2_arm64.deb ... 532s Unpacking liblapack3:arm64 (3.12.0-3build2) ... 532s Selecting previously unselected package python3-numpy. 532s Preparing to unpack .../23-python3-numpy_1%3a1.26.4+ds-11build1_arm64.deb ... 532s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 532s Selecting previously unselected package python3-tz. 532s Preparing to unpack .../24-python3-tz_2024.1-2_all.deb ... 532s Unpacking python3-tz (2024.1-2) ... 532s Selecting previously unselected package python3-pandas-lib:arm64. 533s Preparing to unpack .../25-python3-pandas-lib_2.2.3+dfsg-5_arm64.deb ... 533s Unpacking python3-pandas-lib:arm64 (2.2.3+dfsg-5) ... 533s Selecting previously unselected package python3-pandas. 533s Preparing to unpack .../26-python3-pandas_2.2.3+dfsg-5_all.deb ... 533s Unpacking python3-pandas (2.2.3+dfsg-5) ... 533s Selecting previously unselected package libgomp1:arm64. 533s Preparing to unpack .../27-libgomp1_14.2.0-8ubuntu1_arm64.deb ... 533s Unpacking libgomp1:arm64 (14.2.0-8ubuntu1) ... 533s Selecting previously unselected package libimagequant0:arm64. 533s Preparing to unpack .../28-libimagequant0_2.18.0-1build1_arm64.deb ... 533s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 533s Selecting previously unselected package libopenjp2-7:arm64. 533s Preparing to unpack .../29-libopenjp2-7_2.5.0-2ubuntu1_arm64.deb ... 533s Unpacking libopenjp2-7:arm64 (2.5.0-2ubuntu1) ... 533s Selecting previously unselected package libgraphite2-3:arm64. 533s Preparing to unpack .../30-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 533s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 533s Selecting previously unselected package libharfbuzz0b:arm64. 533s Preparing to unpack .../31-libharfbuzz0b_10.0.1-1_arm64.deb ... 533s Unpacking libharfbuzz0b:arm64 (10.0.1-1) ... 533s Selecting previously unselected package libraqm0:arm64. 533s Preparing to unpack .../32-libraqm0_0.10.1-1build1_arm64.deb ... 533s Unpacking libraqm0:arm64 (0.10.1-1build1) ... 533s Selecting previously unselected package libdeflate0:arm64. 533s Preparing to unpack .../33-libdeflate0_1.22-1_arm64.deb ... 533s Unpacking libdeflate0:arm64 (1.22-1) ... 533s Selecting previously unselected package libjbig0:arm64. 533s Preparing to unpack .../34-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 533s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 533s Selecting previously unselected package liblerc4:arm64. 533s Preparing to unpack .../35-liblerc4_4.0.0+ds-4ubuntu2_arm64.deb ... 533s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu2) ... 533s Selecting previously unselected package libsharpyuv0:arm64. 533s Preparing to unpack .../36-libsharpyuv0_1.4.0-0.1_arm64.deb ... 533s Unpacking libsharpyuv0:arm64 (1.4.0-0.1) ... 533s Selecting previously unselected package libwebp7:arm64. 533s Preparing to unpack .../37-libwebp7_1.4.0-0.1_arm64.deb ... 533s Unpacking libwebp7:arm64 (1.4.0-0.1) ... 533s Selecting previously unselected package libtiff6:arm64. 533s Preparing to unpack .../38-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 533s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 533s Selecting previously unselected package libwebpdemux2:arm64. 533s Preparing to unpack .../39-libwebpdemux2_1.4.0-0.1_arm64.deb ... 533s Unpacking libwebpdemux2:arm64 (1.4.0-0.1) ... 533s Selecting previously unselected package libwebpmux3:arm64. 533s Preparing to unpack .../40-libwebpmux3_1.4.0-0.1_arm64.deb ... 533s Unpacking libwebpmux3:arm64 (1.4.0-0.1) ... 533s Selecting previously unselected package python3-pil:arm64. 533s Preparing to unpack .../41-python3-pil_10.4.0-1ubuntu1_arm64.deb ... 533s Unpacking python3-pil:arm64 (10.4.0-1ubuntu1) ... 533s Selecting previously unselected package fonts-dejavu-mono. 533s Preparing to unpack .../42-fonts-dejavu-mono_2.37-8_all.deb ... 533s Unpacking fonts-dejavu-mono (2.37-8) ... 533s Selecting previously unselected package fonts-dejavu-core. 533s Preparing to unpack .../43-fonts-dejavu-core_2.37-8_all.deb ... 534s Unpacking fonts-dejavu-core (2.37-8) ... 534s Selecting previously unselected package libfontenc1:arm64. 534s Preparing to unpack .../44-libfontenc1_1%3a1.1.8-1build1_arm64.deb ... 534s Unpacking libfontenc1:arm64 (1:1.1.8-1build1) ... 534s Selecting previously unselected package x11-common. 534s Preparing to unpack .../45-x11-common_1%3a7.7+23ubuntu3_all.deb ... 534s Unpacking x11-common (1:7.7+23ubuntu3) ... 534s Selecting previously unselected package xfonts-encodings. 534s Preparing to unpack .../46-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 534s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 534s Selecting previously unselected package xfonts-utils. 534s Preparing to unpack .../47-xfonts-utils_1%3a7.7+7_arm64.deb ... 534s Unpacking xfonts-utils (1:7.7+7) ... 534s Selecting previously unselected package fonts-urw-base35. 534s Preparing to unpack .../48-fonts-urw-base35_20200910-8_all.deb ... 534s Unpacking fonts-urw-base35 (20200910-8) ... 534s Selecting previously unselected package fontconfig-config. 534s Preparing to unpack .../49-fontconfig-config_2.15.0-1.1ubuntu2_arm64.deb ... 534s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 534s Selecting previously unselected package libfontconfig1:arm64. 534s Preparing to unpack .../50-libfontconfig1_2.15.0-1.1ubuntu2_arm64.deb ... 534s Unpacking libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... 534s Selecting previously unselected package libpixman-1-0:arm64. 534s Preparing to unpack .../51-libpixman-1-0_0.44.0-3_arm64.deb ... 534s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 534s Selecting previously unselected package libxcb-render0:arm64. 534s Preparing to unpack .../52-libxcb-render0_1.17.0-2_arm64.deb ... 534s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 534s Selecting previously unselected package libxcb-shm0:arm64. 534s Preparing to unpack .../53-libxcb-shm0_1.17.0-2_arm64.deb ... 534s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 534s Selecting previously unselected package libxrender1:arm64. 534s Preparing to unpack .../54-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 534s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 534s Selecting previously unselected package libcairo2:arm64. 534s Preparing to unpack .../55-libcairo2_1.18.2-2_arm64.deb ... 534s Unpacking libcairo2:arm64 (1.18.2-2) ... 534s Selecting previously unselected package python3-cairo. 534s Preparing to unpack .../56-python3-cairo_1.26.1-2_arm64.deb ... 534s Unpacking python3-cairo (1.26.1-2) ... 534s Selecting previously unselected package python3-freetype. 534s Preparing to unpack .../57-python3-freetype_2.5.1-1_all.deb ... 534s Unpacking python3-freetype (2.5.1-1) ... 534s Selecting previously unselected package python3-rlpycairo. 535s Preparing to unpack .../58-python3-rlpycairo_0.3.0-3_all.deb ... 535s Unpacking python3-rlpycairo (0.3.0-3) ... 535s Selecting previously unselected package python3-reportlab. 535s Preparing to unpack .../59-python3-reportlab_4.2.5-1_all.deb ... 535s Unpacking python3-reportlab (4.2.5-1) ... 535s Selecting previously unselected package xml-core. 535s Preparing to unpack .../60-xml-core_0.19_all.deb ... 535s Unpacking xml-core (0.19) ... 535s Selecting previously unselected package w3c-sgml-lib. 535s Preparing to unpack .../61-w3c-sgml-lib_1.3-3_all.deb ... 535s Unpacking w3c-sgml-lib (1.3-3) ... 535s Selecting previously unselected package python3-biopython. 535s Preparing to unpack .../62-python3-biopython_1.84+dfsg-4_arm64.deb ... 535s Unpacking python3-biopython (1.84+dfsg-4) ... 535s Selecting previously unselected package libdivsufsort3:arm64. 535s Preparing to unpack .../63-libdivsufsort3_2.0.1-6_arm64.deb ... 535s Unpacking libdivsufsort3:arm64 (2.0.1-6) ... 535s Selecting previously unselected package hmmer. 535s Preparing to unpack .../64-hmmer_3.4+dfsg-2_arm64.deb ... 535s Unpacking hmmer (3.4+dfsg-2) ... 535s Selecting previously unselected package prodigal. 535s Preparing to unpack .../65-prodigal_1%3a2.6.3-6_arm64.deb ... 535s Unpacking prodigal (1:2.6.3-6) ... 535s Selecting previously unselected package busco. 535s Preparing to unpack .../66-busco_5.5.0-2_arm64.deb ... 535s Unpacking busco (5.5.0-2) ... 535s Selecting previously unselected package libpython3.13-stdlib:arm64. 535s Preparing to unpack .../67-libpython3.13-stdlib_3.13.0-2_arm64.deb ... 535s Unpacking libpython3.13-stdlib:arm64 (3.13.0-2) ... 535s Selecting previously unselected package python3.13. 535s Preparing to unpack .../68-python3.13_3.13.0-2_arm64.deb ... 535s Unpacking python3.13 (3.13.0-2) ... 535s Selecting previously unselected package python3-all. 535s Preparing to unpack .../69-python3-all_3.12.7-1_arm64.deb ... 535s Unpacking python3-all (3.12.7-1) ... 535s Selecting previously unselected package autopkgtest-satdep. 535s Preparing to unpack .../70-2-autopkgtest-satdep.deb ... 535s Unpacking autopkgtest-satdep (0) ... 535s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 535s Setting up liblcms2-2:arm64 (2.16-2) ... 535s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 535s Setting up libsharpyuv0:arm64 (1.4.0-0.1) ... 535s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu2) ... 535s Setting up java-common (0.76) ... 535s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 535s Setting up libcommons-cli-java (1.6.0-1) ... 535s Setting up libxcb-render0:arm64 (1.17.0-2) ... 535s Setting up prodigal (1:2.6.3-6) ... 535s Setting up x11-common (1:7.7+23ubuntu3) ... 536s Setting up libdeflate0:arm64 (1.22-1) ... 536s Setting up liblog4j1.2-java (1.2.17-11) ... 536s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 536s Setting up libgomp1:arm64 (14.2.0-8ubuntu1) ... 536s Setting up python3-freetype (2.5.1-1) ... 536s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 536s Setting up python3-tz (2024.1-2) ... 536s Setting up python3-six (1.16.0-7) ... 536s Setting up libpython3.13-minimal:arm64 (3.13.0-2) ... 536s Setting up libfontenc1:arm64 (1:1.1.8-1build1) ... 536s Setting up libblas3:arm64 (3.12.0-3build2) ... 536s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 536s Setting up libapache-pom-java (33-2) ... 537s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 537s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 537s Setting up fonts-dejavu-mono (2.37-8) ... 537s Setting up fonts-dejavu-core (2.37-8) ... 537s Setting up libpcsclite1:arm64 (2.3.0-1) ... 537s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ... 537s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ... 537s Setting up libwebp7:arm64 (1.4.0-0.1) ... 537s Setting up libopenjp2-7:arm64 (2.5.0-2ubuntu1) ... 537s Setting up python3.13-minimal (3.13.0-2) ... 537s Setting up libharfbuzz0b:arm64 (10.0.1-1) ... 537s Setting up python3-dateutil (2.9.0-2) ... 538s Setting up sgml-base (1.31) ... 538s Setting up ca-certificates-java (20240118) ... 538s No JRE found. Skipping Java certificates setup. 538s Setting up libdivsufsort3:arm64 (2.0.1-6) ... 538s Setting up libwebpmux3:arm64 (1.4.0-0.1) ... 538s Setting up libpython3.13-stdlib:arm64 (3.13.0-2) ... 538s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 538s Setting up liblapack3:arm64 (3.12.0-3build2) ... 538s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 538s Setting up python3.13 (3.13.0-2) ... 539s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 539s Setting up libwebpdemux2:arm64 (1.4.0-0.1) ... 539s Setting up libcommons-parent-java (56-1) ... 539s Setting up python3-all (3.12.7-1) ... 539s Setting up xfonts-utils (1:7.7+7) ... 539s Setting up libraqm0:arm64 (0.10.1-1build1) ... 539s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 543s Setting up openjdk-17-jre-headless:arm64 (17.0.13+11-2build1) ... 543s update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode 543s update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 543s update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 543s update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 543s update-alternatives: using /usr/lib/jvm/java-17-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 543s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 543s Setting up xml-core (0.19) ... 543s Setting up hmmer (3.4+dfsg-2) ... 543s Setting up libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... 543s Setting up libcommons-codec-java (1.17.1-1) ... 543s Setting up libcommons-io-java (2.17.0-1) ... 543s Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-5) ... 543s Setting up fonts-urw-base35 (20200910-8) ... 543s Setting up libcairo2:arm64 (1.18.2-2) ... 543s Setting up libmpj-java (0.44+dfsg-4) ... 543s Setting up python3-pil:arm64 (10.4.0-1ubuntu1) ... 544s Setting up python3-pandas (2.2.3+dfsg-5) ... 555s Setting up python3-cairo (1.26.1-2) ... 555s Setting up python3-rlpycairo (0.3.0-3) ... 555s Setting up python3-reportlab (4.2.5-1) ... 557s Processing triggers for libc-bin (2.40-1ubuntu3) ... 557s Processing triggers for systemd (256.5-2ubuntu4) ... 557s Processing triggers for man-db (2.12.1-3) ... 557s Processing triggers for ca-certificates-java (20240118) ... 558s Adding debian:ACCVRAIZ1.pem 558s Adding debian:AC_RAIZ_FNMT-RCM.pem 558s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 558s Adding debian:ANF_Secure_Server_Root_CA.pem 558s Adding debian:Actalis_Authentication_Root_CA.pem 558s Adding debian:AffirmTrust_Commercial.pem 558s Adding debian:AffirmTrust_Networking.pem 558s Adding debian:AffirmTrust_Premium.pem 558s Adding debian:AffirmTrust_Premium_ECC.pem 558s Adding debian:Amazon_Root_CA_1.pem 558s Adding debian:Amazon_Root_CA_2.pem 558s Adding debian:Amazon_Root_CA_3.pem 558s Adding debian:Amazon_Root_CA_4.pem 558s Adding debian:Atos_TrustedRoot_2011.pem 558s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 558s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 558s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 558s Adding debian:BJCA_Global_Root_CA1.pem 558s Adding debian:BJCA_Global_Root_CA2.pem 558s Adding debian:Baltimore_CyberTrust_Root.pem 558s Adding debian:Buypass_Class_2_Root_CA.pem 558s Adding debian:Buypass_Class_3_Root_CA.pem 558s Adding debian:CA_Disig_Root_R2.pem 558s Adding debian:CFCA_EV_ROOT.pem 558s Adding debian:COMODO_Certification_Authority.pem 558s Adding debian:COMODO_ECC_Certification_Authority.pem 558s Adding debian:COMODO_RSA_Certification_Authority.pem 558s Adding debian:Certainly_Root_E1.pem 558s Adding debian:Certainly_Root_R1.pem 558s Adding debian:Certigna.pem 558s Adding debian:Certigna_Root_CA.pem 558s Adding debian:Certum_EC-384_CA.pem 558s Adding debian:Certum_Trusted_Network_CA.pem 558s Adding debian:Certum_Trusted_Network_CA_2.pem 558s Adding debian:Certum_Trusted_Root_CA.pem 558s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 558s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 558s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 558s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 558s Adding debian:Comodo_AAA_Services_root.pem 558s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 558s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 558s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 558s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 558s Adding debian:DigiCert_Assured_ID_Root_CA.pem 558s Adding debian:DigiCert_Assured_ID_Root_G2.pem 558s Adding debian:DigiCert_Assured_ID_Root_G3.pem 558s Adding debian:DigiCert_Global_Root_CA.pem 558s Adding debian:DigiCert_Global_Root_G2.pem 558s Adding debian:DigiCert_Global_Root_G3.pem 558s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 558s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 558s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 558s Adding debian:DigiCert_Trusted_Root_G4.pem 558s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 558s Adding debian:Entrust_Root_Certification_Authority.pem 558s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 558s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 558s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 558s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 558s Adding debian:GLOBALTRUST_2020.pem 558s Adding debian:GTS_Root_R1.pem 558s Adding debian:GTS_Root_R2.pem 558s Adding debian:GTS_Root_R3.pem 558s Adding debian:GTS_Root_R4.pem 558s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 558s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 558s Adding debian:GlobalSign_Root_CA.pem 558s Adding debian:GlobalSign_Root_CA_-_R3.pem 558s Adding debian:GlobalSign_Root_CA_-_R6.pem 558s Adding debian:GlobalSign_Root_E46.pem 558s Adding debian:GlobalSign_Root_R46.pem 558s Adding debian:Go_Daddy_Class_2_CA.pem 558s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 558s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 558s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 558s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 558s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 558s Adding debian:HiPKI_Root_CA_-_G1.pem 558s Adding debian:Hongkong_Post_Root_CA_3.pem 558s Adding debian:ISRG_Root_X1.pem 558s Adding debian:ISRG_Root_X2.pem 558s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 558s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 558s Adding debian:Izenpe.com.pem 558s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 558s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 558s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 558s Adding debian:NAVER_Global_Root_Certification_Authority.pem 558s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 558s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 558s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 558s Adding debian:QuoVadis_Root_CA_1_G3.pem 558s Adding debian:QuoVadis_Root_CA_2.pem 558s Adding debian:QuoVadis_Root_CA_2_G3.pem 558s Adding debian:QuoVadis_Root_CA_3.pem 558s Adding debian:QuoVadis_Root_CA_3_G3.pem 558s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 558s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 558s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 558s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 558s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 558s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 558s Adding debian:SZAFIR_ROOT_CA2.pem 558s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 558s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 558s Adding debian:SecureSign_RootCA11.pem 558s Adding debian:SecureTrust_CA.pem 558s Adding debian:Secure_Global_CA.pem 558s Adding debian:Security_Communication_ECC_RootCA1.pem 558s Adding debian:Security_Communication_RootCA2.pem 558s Adding debian:Security_Communication_RootCA3.pem 558s Adding debian:Security_Communication_Root_CA.pem 558s Adding debian:Starfield_Class_2_CA.pem 558s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 558s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 558s Adding debian:SwissSign_Gold_CA_-_G2.pem 558s Adding debian:SwissSign_Silver_CA_-_G2.pem 558s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 558s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 558s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 558s Adding debian:TWCA_Global_Root_CA.pem 558s Adding debian:TWCA_Root_Certification_Authority.pem 558s Adding debian:TeliaSonera_Root_CA_v1.pem 558s Adding debian:Telia_Root_CA_v2.pem 558s Adding debian:TrustAsia_Global_Root_CA_G3.pem 558s Adding debian:TrustAsia_Global_Root_CA_G4.pem 558s Adding debian:Trustwave_Global_Certification_Authority.pem 558s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 558s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 558s Adding debian:TunTrust_Root_CA.pem 558s Adding debian:UCA_Extended_Validation_Root.pem 558s Adding debian:UCA_Global_G2_Root.pem 558s Adding debian:USERTrust_ECC_Certification_Authority.pem 558s Adding debian:USERTrust_RSA_Certification_Authority.pem 558s Adding debian:XRamp_Global_CA_Root.pem 558s Adding debian:certSIGN_ROOT_CA.pem 558s Adding debian:certSIGN_Root_CA_G2.pem 558s Adding debian:e-Szigno_Root_CA_2017.pem 558s Adding debian:ePKI_Root_Certification_Authority.pem 558s Adding debian:emSign_ECC_Root_CA_-_C3.pem 558s Adding debian:emSign_ECC_Root_CA_-_G3.pem 558s Adding debian:emSign_Root_CA_-_C1.pem 558s Adding debian:emSign_Root_CA_-_G1.pem 558s Adding debian:vTrus_ECC_Root_CA.pem 558s Adding debian:vTrus_Root_CA.pem 558s done. 558s Setting up bbmap (39.09+dfsg-1) ... 558s Processing triggers for sgml-base (1.31) ... 558s Setting up w3c-sgml-lib (1.3-3) ... 584s Setting up python3-biopython (1.84+dfsg-4) ... 587s Setting up busco (5.5.0-2) ... 587s /usr/lib/python3/dist-packages/busco/BuscoPlacer.py:211: SyntaxWarning: invalid escape sequence '\[' 587s "[^0-9][0-9]*:[0-9]*[^0-9]{0,1}[0-9]*[^0-9]{0,2}[0-9]*\[%s\]" 587s /usr/lib/python3/dist-packages/busco/busco_tools/miniprot.py:200: SyntaxWarning: invalid escape sequence '\*' 587s self.ata_seq = re.sub("\*", "", sta_seq.upper()) 587s /usr/lib/python3/dist-packages/busco/BuscoPlacer.py:211: SyntaxWarning: invalid escape sequence '\[' 587s "[^0-9][0-9]*:[0-9]*[^0-9]{0,1}[0-9]*[^0-9]{0,2}[0-9]*\[%s\]" 587s /usr/lib/python3/dist-packages/busco/busco_tools/miniprot.py:200: SyntaxWarning: invalid escape sequence '\*' 587s self.ata_seq = re.sub("\*", "", sta_seq.upper()) 587s Setting up autopkgtest-satdep (0) ... 592s (Reading database ... 86562 files and directories currently installed.) 592s Removing autopkgtest-satdep (0) ... 594s autopkgtest [09:01:33]: test run-busco-analysis: [----------------------- 595s /usr/bin/busco:13: SyntaxWarning: invalid escape sequence '\w' 595s "cannot import name '(?P[\w]+)", err.msg 595s 2024-11-13 09:01:34 INFO: ***** Start a BUSCO v5.5.0 analysis, current time: 11/13/2024 09:01:34 ***** 595s 2024-11-13 09:01:34 INFO: Configuring BUSCO with local environment 595s 2024-11-13 09:01:34 INFO: Mode is genome 595s 2024-11-13 09:01:34 INFO: Downloading information on latest versions of BUSCO data... 597s 2024-11-13 09:01:36 INFO: Input file is /tmp/autopkgtest.vfgXQN/autopkgtest_tmp/genome.fna 597s 2024-11-13 09:01:36 INFO: Downloading file 'https://busco-data.ezlab.org/v5/data/lineages/bacteria_odb10.2024-01-08.tar.gz' 598s 2024-11-13 09:01:37 INFO: Decompressing file '/tmp/autopkgtest.vfgXQN/autopkgtest_tmp/busco_downloads/lineages/bacteria_odb10.tar.gz' 598s 2024-11-13 09:01:37 INFO: Running BUSCO using lineage dataset bacteria_odb10 (prokaryota, 2024-01-08) 598s 2024-11-13 09:01:37 INFO: Running 1 job(s) on bbmap, starting at 11/13/2024 09:01:37 598s /usr/bin/busco:13: SyntaxWarning: invalid escape sequence '\w' 598s "cannot import name '(?P[\w]+)", err.msg 599s 2024-11-13 09:01:38 INFO: [bbmap] 1 of 1 task(s) completed 599s 2024-11-13 09:01:38 INFO: ***** Run Prodigal on input to predict and extract genes ***** 599s 2024-11-13 09:01:38 INFO: Running Prodigal with genetic code 11 in single mode 599s 2024-11-13 09:01:38 INFO: Running 1 job(s) on prodigal, starting at 11/13/2024 09:01:38 599s /usr/bin/busco:13: SyntaxWarning: invalid escape sequence '\w' 599s "cannot import name '(?P[\w]+)", err.msg 600s 2024-11-13 09:01:39 INFO: [prodigal] 1 of 1 task(s) completed 600s 2024-11-13 09:01:39 INFO: Genetic code 11 selected as optimal 600s 2024-11-13 09:01:39 INFO: ***** Run HMMER on gene sequences ***** 600s 2024-11-13 09:01:39 INFO: Running 124 job(s) on hmmsearch, starting at 11/13/2024 09:01:39 600s /usr/bin/busco:13: SyntaxWarning: invalid escape sequence '\w' 600s "cannot import name '(?P[\w]+)", err.msg 601s 2024-11-13 09:01:40 INFO: [hmmsearch] 13 of 124 task(s) completed 601s 2024-11-13 09:01:40 INFO: [hmmsearch] 25 of 124 task(s) completed 601s 2024-11-13 09:01:40 INFO: [hmmsearch] 38 of 124 task(s) completed 601s 2024-11-13 09:01:40 INFO: [hmmsearch] 50 of 124 task(s) completed 602s 2024-11-13 09:01:40 INFO: [hmmsearch] 63 of 124 task(s) completed 602s 2024-11-13 09:01:41 INFO: [hmmsearch] 75 of 124 task(s) completed 602s 2024-11-13 09:01:41 INFO: [hmmsearch] 87 of 124 task(s) completed 602s 2024-11-13 09:01:41 INFO: [hmmsearch] 100 of 124 task(s) completed 602s 2024-11-13 09:01:41 INFO: [hmmsearch] 112 of 124 task(s) completed 603s 2024-11-13 09:01:42 INFO: [hmmsearch] 124 of 124 task(s) completed 603s /usr/bin/busco:13: SyntaxWarning: invalid escape sequence '\w' 603s "cannot import name '(?P[\w]+)", err.msg 603s 2024-11-13 09:01:42 INFO: Results: C:21.0%[S:21.0%,D:0.0%],F:0.8%,M:78.2%,n:124 603s 603s 2024-11-13 09:01:42 INFO: 603s 603s --------------------------------------------------- 603s |Results from dataset bacteria_odb10 | 603s --------------------------------------------------- 603s |C:21.0%[S:21.0%,D:0.0%],F:0.8%,M:78.2%,n:124 | 603s |26 Complete BUSCOs (C) | 603s |26 Complete and single-copy BUSCOs (S) | 603s |0 Complete and duplicated BUSCOs (D) | 603s |1 Fragmented BUSCOs (F) | 603s |97 Missing BUSCOs (M) | 603s |124 Total BUSCO groups searched | 603s --------------------------------------------------- 603s 2024-11-13 09:01:42 INFO: BUSCO analysis done. Total running time: 7 seconds 603s 2024-11-13 09:01:42 INFO: Results written in /tmp/autopkgtest.vfgXQN/autopkgtest_tmp/test_bacteria 603s 2024-11-13 09:01:42 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 603s 603s 2024-11-13 09:01:42 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 604s Output Directory Generated 604s PASS 604s autopkgtest [09:01:43]: test run-busco-analysis: -----------------------] 605s autopkgtest [09:01:44]: test run-busco-analysis: - - - - - - - - - - results - - - - - - - - - - 605s run-busco-analysis PASS 606s autopkgtest [09:01:45]: @@@@@@@@@@@@@@@@@@@@ summary 606s run-unit-test FAIL non-zero exit status 1 606s run-busco-analysis PASS 619s nova [W] Skipping flock in bos03-arm64 619s Creating nova instance adt-plucky-arm64-busco-20241113-085139-juju-7f2275-prod-proposed-migration-environment-20-436589dd-f0d0-4b4c-92bc-8d299b5dd822 from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)... 619s nova [W] Skipping flock in bos03-arm64 619s Creating nova instance adt-plucky-arm64-busco-20241113-085139-juju-7f2275-prod-proposed-migration-environment-20-436589dd-f0d0-4b4c-92bc-8d299b5dd822 from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)...