0s autopkgtest [16:33:06]: starting date and time: 2024-11-18 16:33:06+0000 0s autopkgtest [16:33:06]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [16:33:06]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._fres58a/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:h5py,src:openmpi,src:sphinx-rtd-theme --apt-upgrade bitshuffle --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=h5py/3.11.0-8ubuntu1 openmpi/5.0.5-6 sphinx-rtd-theme/3.0.2+dfsg-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-39.secgroup --name adt-plucky-arm64-bitshuffle-20241118-163306-juju-7f2275-prod-proposed-migration-environment-20-37695292-0e3d-4e2e-82d3-4bf4081ff1a5 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 83s autopkgtest [16:34:29]: testbed dpkg architecture: arm64 84s autopkgtest [16:34:30]: testbed apt version: 2.9.8 84s autopkgtest [16:34:30]: @@@@@@@@@@@@@@@@@@@@ test bed setup 84s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 85s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 85s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [71.7 kB] 85s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [814 kB] 85s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.5 kB] 85s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [103 kB] 85s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 85s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [638 kB] 85s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [6696 B] 85s Fetched 1778 kB in 1s (1985 kB/s) 85s Reading package lists... 88s Reading package lists... 88s Building dependency tree... 88s Reading state information... 89s Calculating upgrade... 89s The following NEW packages will be installed: 89s liblsof0 89s The following packages will be upgraded: 89s libnvme1t64 linux-firmware lsof 89s 3 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 89s Need to get 538 MB of archives. 89s After this operation, 1548 kB of additional disk space will be used. 89s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsof0 arm64 4.99.3+dfsg-2 [53.5 kB] 89s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 lsof arm64 4.99.3+dfsg-2 [235 kB] 90s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libnvme1t64 arm64 1.11.1-1 [83.7 kB] 90s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 linux-firmware arm64 20241118.git6e4e94b0-0ubuntu1 [537 MB] 118s Fetched 538 MB in 28s (19.2 MB/s) 118s Selecting previously unselected package liblsof0. 118s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79972 files and directories currently installed.) 118s Preparing to unpack .../liblsof0_4.99.3+dfsg-2_arm64.deb ... 118s Unpacking liblsof0 (4.99.3+dfsg-2) ... 118s Preparing to unpack .../lsof_4.99.3+dfsg-2_arm64.deb ... 118s Unpacking lsof (4.99.3+dfsg-2) over (4.95.0-1.1) ... 118s Preparing to unpack .../libnvme1t64_1.11.1-1_arm64.deb ... 118s Unpacking libnvme1t64 (1.11.1-1) over (1.11-2) ... 118s Preparing to unpack .../linux-firmware_20241118.git6e4e94b0-0ubuntu1_arm64.deb ... 118s Unpacking linux-firmware (20241118.git6e4e94b0-0ubuntu1) over (20241108.git3bbb13a7-0ubuntu1) ... 122s Setting up linux-firmware (20241118.git6e4e94b0-0ubuntu1) ... 122s Setting up liblsof0 (4.99.3+dfsg-2) ... 122s Setting up libnvme1t64 (1.11.1-1) ... 122s Setting up lsof (4.99.3+dfsg-2) ... 122s Processing triggers for man-db (2.13.0-1) ... 122s Processing triggers for libc-bin (2.40-1ubuntu3) ... 122s Processing triggers for initramfs-tools (0.142ubuntu35) ... 122s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic 122s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 138s System running in EFI mode, skipping. 138s Reading package lists... 139s Building dependency tree... 139s Reading state information... 139s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 140s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 140s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 140s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 140s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 141s Reading package lists... 141s Reading package lists... 141s Building dependency tree... 141s Reading state information... 142s Calculating upgrade... 142s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 142s Reading package lists... 142s Building dependency tree... 142s Reading state information... 143s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 143s autopkgtest [16:35:29]: rebooting testbed after setup commands that affected boot 147s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 169s autopkgtest [16:35:55]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 172s autopkgtest [16:35:58]: @@@@@@@@@@@@@@@@@@@@ apt-source bitshuffle 174s Get:1 http://ftpmaster.internal/ubuntu plucky/universe bitshuffle 0.5.1-2 (dsc) [2643 B] 174s Get:2 http://ftpmaster.internal/ubuntu plucky/universe bitshuffle 0.5.1-2 (tar) [190 kB] 174s Get:3 http://ftpmaster.internal/ubuntu plucky/universe bitshuffle 0.5.1-2 (diff) [8104 B] 174s gpgv: Signature made Sun Sep 22 08:35:17 2024 UTC 174s gpgv: using RSA key D9B453B799B8830D945E6A0A5BF54E5E12B900BB 174s gpgv: issuer "picca@debian.org" 174s gpgv: Can't check signature: No public key 174s dpkg-source: warning: cannot verify inline signature for ./bitshuffle_0.5.1-2.dsc: no acceptable signature found 174s autopkgtest [16:36:00]: testing package bitshuffle version 0.5.1-2 175s autopkgtest [16:36:01]: build not needed 175s autopkgtest [16:36:01]: test command1: preparing testbed 178s Reading package lists... 178s Building dependency tree... 178s Reading state information... 179s Starting pkgProblemResolver with broken count: 0 179s Starting 2 pkgProblemResolver with broken count: 0 179s Done 179s The following additional packages will be installed: 179s bitshuffle libaec0 libamd-comgr2 libamdhip64-5 libblas3 libdrm-amdgpu1 179s libevent-pthreads-2.1-7t64 libfabric1 libgfortran5 libgomp1 libhdf5-103-1t64 179s libhdf5-hl-100t64 libhdf5-openmpi-103-1t64 libhsa-runtime64-1 libhsakmt1 179s libhwloc-plugins libhwloc15 libibmad5 libibumad3 liblapack3 libllvm17t64 179s liblzf1 libmunge2 libopenmpi3t64 libpciaccess0 libpmix2t64 librdmacm1t64 179s libsz2 libucx0 libxnvctrl0 ocl-icd-libopencl1 python3-h5py 179s python3-h5py-serial python3-numpy 179s Suggested packages: 179s opencl-icd python-h5py-doc gcc gfortran python-numpy-doc python3-dev 179s python3-pytest 179s The following NEW packages will be installed: 179s autopkgtest-satdep bitshuffle libaec0 libamd-comgr2 libamdhip64-5 libblas3 179s libdrm-amdgpu1 libevent-pthreads-2.1-7t64 libfabric1 libgfortran5 libgomp1 179s libhdf5-103-1t64 libhdf5-hl-100t64 libhdf5-openmpi-103-1t64 179s libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 libibmad5 179s libibumad3 liblapack3 libllvm17t64 liblzf1 libmunge2 libopenmpi3t64 179s libpciaccess0 libpmix2t64 librdmacm1t64 libsz2 libucx0 libxnvctrl0 179s ocl-icd-libopencl1 python3-h5py python3-h5py-serial python3-numpy 179s 0 upgraded, 35 newly installed, 0 to remove and 0 not upgraded. 179s Need to get 65.1 MB/65.1 MB of archives. 179s After this operation, 282 MB of additional disk space will be used. 179s Get:1 /tmp/autopkgtest.32dJW1/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [712 B] 180s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 180s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB] 180s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 180s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11ubuntu1 [4149 kB] 181s Get:6 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 181s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 181s Get:8 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4ubuntu3 [1207 kB] 181s Get:9 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4ubuntu3 [56.9 kB] 181s Get:10 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 181s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 python3-h5py-serial arm64 3.11.0-8ubuntu1 [1449 kB] 181s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 python3-h5py all 3.11.0-8ubuntu1 [7982 B] 181s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB] 181s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10 [7922 B] 181s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 librdmacm1t64 arm64 52.0-2ubuntu1 [71.5 kB] 181s Get:16 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfabric1 arm64 1.17.0-3ubuntu1 [542 kB] 181s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhwloc15 arm64 2.11.2-1 [162 kB] 181s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmunge2 arm64 0.5.15-4build1 [14.9 kB] 181s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libpciaccess0 arm64 0.17-3build1 [18.9 kB] 181s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu4 [12.4 kB] 181s Get:21 http://ftpmaster.internal/ubuntu plucky/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1build1 [37.6 kB] 181s Get:22 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhwloc-plugins arm64 2.11.2-1 [15.8 kB] 181s Get:23 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpmix2t64 arm64 5.0.3-2 [662 kB] 181s Get:24 http://ftpmaster.internal/ubuntu plucky/universe arm64 libllvm17t64 arm64 1:17.0.6-18 [24.9 MB] 183s Get:25 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3build2 [14.1 MB] 185s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libdrm-amdgpu1 arm64 2.4.123-1 [20.9 kB] 185s Get:27 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhsakmt1 arm64 5.7.0-1build1 [63.6 kB] 185s Get:28 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhsa-runtime64-1 arm64 5.7.1-2build1 [286 kB] 185s Get:29 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamdhip64-5 arm64 5.7.1-5 [9704 kB] 185s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libibumad3 arm64 52.0-2ubuntu1 [29.3 kB] 185s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libibmad5 arm64 52.0-2ubuntu1 [43.1 kB] 185s Get:32 http://ftpmaster.internal/ubuntu plucky/universe arm64 libucx0 arm64 1.17.0+ds-3build1 [1093 kB] 186s Get:33 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 libopenmpi3t64 arm64 5.0.5-6 [2041 kB] 186s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-openmpi-103-1t64 arm64 1.10.10+repack-4ubuntu3 [1258 kB] 186s Get:35 http://ftpmaster.internal/ubuntu plucky/universe arm64 bitshuffle arm64 0.5.1-2 [154 kB] 186s Fetched 65.1 MB in 6s (10.2 MB/s) 186s Selecting previously unselected package libblas3:arm64. 187s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80002 files and directories currently installed.) 187s Preparing to unpack .../00-libblas3_3.12.0-3build2_arm64.deb ... 187s Unpacking libblas3:arm64 (3.12.0-3build2) ... 187s Selecting previously unselected package libgfortran5:arm64. 187s Preparing to unpack .../01-libgfortran5_14.2.0-8ubuntu1_arm64.deb ... 187s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ... 187s Selecting previously unselected package liblapack3:arm64. 187s Preparing to unpack .../02-liblapack3_3.12.0-3build2_arm64.deb ... 187s Unpacking liblapack3:arm64 (3.12.0-3build2) ... 187s Selecting previously unselected package python3-numpy. 187s Preparing to unpack .../03-python3-numpy_1%3a1.26.4+ds-11ubuntu1_arm64.deb ... 187s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 187s Selecting previously unselected package libaec0:arm64. 187s Preparing to unpack .../04-libaec0_1.1.3-1_arm64.deb ... 187s Unpacking libaec0:arm64 (1.1.3-1) ... 187s Selecting previously unselected package libsz2:arm64. 187s Preparing to unpack .../05-libsz2_1.1.3-1_arm64.deb ... 187s Unpacking libsz2:arm64 (1.1.3-1) ... 187s Selecting previously unselected package libhdf5-103-1t64:arm64. 187s Preparing to unpack .../06-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_arm64.deb ... 187s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 187s Selecting previously unselected package libhdf5-hl-100t64:arm64. 187s Preparing to unpack .../07-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_arm64.deb ... 187s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 187s Selecting previously unselected package liblzf1:arm64. 187s Preparing to unpack .../08-liblzf1_3.6-4_arm64.deb ... 187s Unpacking liblzf1:arm64 (3.6-4) ... 187s Selecting previously unselected package python3-h5py-serial. 187s Preparing to unpack .../09-python3-h5py-serial_3.11.0-8ubuntu1_arm64.deb ... 187s Unpacking python3-h5py-serial (3.11.0-8ubuntu1) ... 187s Selecting previously unselected package python3-h5py. 187s Preparing to unpack .../10-python3-h5py_3.11.0-8ubuntu1_all.deb ... 187s Unpacking python3-h5py (3.11.0-8ubuntu1) ... 187s Selecting previously unselected package libgomp1:arm64. 187s Preparing to unpack .../11-libgomp1_14.2.0-8ubuntu1_arm64.deb ... 187s Unpacking libgomp1:arm64 (14.2.0-8ubuntu1) ... 187s Selecting previously unselected package libevent-pthreads-2.1-7t64:arm64. 187s Preparing to unpack .../12-libevent-pthreads-2.1-7t64_2.1.12-stable-10_arm64.deb ... 187s Unpacking libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 187s Selecting previously unselected package librdmacm1t64:arm64. 187s Preparing to unpack .../13-librdmacm1t64_52.0-2ubuntu1_arm64.deb ... 187s Unpacking librdmacm1t64:arm64 (52.0-2ubuntu1) ... 187s Selecting previously unselected package libfabric1:arm64. 187s Preparing to unpack .../14-libfabric1_1.17.0-3ubuntu1_arm64.deb ... 187s Unpacking libfabric1:arm64 (1.17.0-3ubuntu1) ... 187s Selecting previously unselected package libhwloc15:arm64. 187s Preparing to unpack .../15-libhwloc15_2.11.2-1_arm64.deb ... 187s Unpacking libhwloc15:arm64 (2.11.2-1) ... 187s Selecting previously unselected package libmunge2:arm64. 187s Preparing to unpack .../16-libmunge2_0.5.15-4build1_arm64.deb ... 187s Unpacking libmunge2:arm64 (0.5.15-4build1) ... 187s Selecting previously unselected package libpciaccess0:arm64. 187s Preparing to unpack .../17-libpciaccess0_0.17-3build1_arm64.deb ... 187s Unpacking libpciaccess0:arm64 (0.17-3build1) ... 187s Selecting previously unselected package libxnvctrl0:arm64. 187s Preparing to unpack .../18-libxnvctrl0_510.47.03-0ubuntu4_arm64.deb ... 187s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 187s Selecting previously unselected package ocl-icd-libopencl1:arm64. 187s Preparing to unpack .../19-ocl-icd-libopencl1_2.3.2-1build1_arm64.deb ... 187s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 187s Selecting previously unselected package libhwloc-plugins:arm64. 187s Preparing to unpack .../20-libhwloc-plugins_2.11.2-1_arm64.deb ... 187s Unpacking libhwloc-plugins:arm64 (2.11.2-1) ... 188s Selecting previously unselected package libpmix2t64:arm64. 188s Preparing to unpack .../21-libpmix2t64_5.0.3-2_arm64.deb ... 188s Unpacking libpmix2t64:arm64 (5.0.3-2) ... 188s Selecting previously unselected package libllvm17t64:arm64. 188s Preparing to unpack .../22-libllvm17t64_1%3a17.0.6-18_arm64.deb ... 188s Unpacking libllvm17t64:arm64 (1:17.0.6-18) ... 188s Selecting previously unselected package libamd-comgr2:arm64. 188s Preparing to unpack .../23-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_arm64.deb ... 188s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 188s Selecting previously unselected package libdrm-amdgpu1:arm64. 188s Preparing to unpack .../24-libdrm-amdgpu1_2.4.123-1_arm64.deb ... 188s Unpacking libdrm-amdgpu1:arm64 (2.4.123-1) ... 188s Selecting previously unselected package libhsakmt1:arm64. 189s Preparing to unpack .../25-libhsakmt1_5.7.0-1build1_arm64.deb ... 189s Unpacking libhsakmt1:arm64 (5.7.0-1build1) ... 189s Selecting previously unselected package libhsa-runtime64-1. 189s Preparing to unpack .../26-libhsa-runtime64-1_5.7.1-2build1_arm64.deb ... 189s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 189s Selecting previously unselected package libamdhip64-5. 189s Preparing to unpack .../27-libamdhip64-5_5.7.1-5_arm64.deb ... 189s Unpacking libamdhip64-5 (5.7.1-5) ... 189s Selecting previously unselected package libibumad3:arm64. 189s Preparing to unpack .../28-libibumad3_52.0-2ubuntu1_arm64.deb ... 189s Unpacking libibumad3:arm64 (52.0-2ubuntu1) ... 189s Selecting previously unselected package libibmad5:arm64. 189s Preparing to unpack .../29-libibmad5_52.0-2ubuntu1_arm64.deb ... 189s Unpacking libibmad5:arm64 (52.0-2ubuntu1) ... 189s Selecting previously unselected package libucx0:arm64. 189s Preparing to unpack .../30-libucx0_1.17.0+ds-3build1_arm64.deb ... 189s Unpacking libucx0:arm64 (1.17.0+ds-3build1) ... 189s Selecting previously unselected package libopenmpi3t64:arm64. 189s Preparing to unpack .../31-libopenmpi3t64_5.0.5-6_arm64.deb ... 189s Unpacking libopenmpi3t64:arm64 (5.0.5-6) ... 189s Selecting previously unselected package libhdf5-openmpi-103-1t64:arm64. 189s Preparing to unpack .../32-libhdf5-openmpi-103-1t64_1.10.10+repack-4ubuntu3_arm64.deb ... 189s Unpacking libhdf5-openmpi-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 189s Selecting previously unselected package bitshuffle. 189s Preparing to unpack .../33-bitshuffle_0.5.1-2_arm64.deb ... 189s Unpacking bitshuffle (0.5.1-2) ... 189s Selecting previously unselected package autopkgtest-satdep. 189s Preparing to unpack .../34-1-autopkgtest-satdep.deb ... 189s Unpacking autopkgtest-satdep (0) ... 189s Setting up libpciaccess0:arm64 (0.17-3build1) ... 189s Setting up libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 189s Setting up libibumad3:arm64 (52.0-2ubuntu1) ... 189s Setting up libibmad5:arm64 (52.0-2ubuntu1) ... 189s Setting up libgomp1:arm64 (14.2.0-8ubuntu1) ... 189s Setting up libaec0:arm64 (1.1.3-1) ... 189s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 189s Setting up libblas3:arm64 (3.12.0-3build2) ... 189s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 189s Setting up libmunge2:arm64 (0.5.15-4build1) ... 189s Setting up libllvm17t64:arm64 (1:17.0.6-18) ... 189s Setting up liblzf1:arm64 (3.6-4) ... 189s Setting up libhwloc15:arm64 (2.11.2-1) ... 189s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ... 189s Setting up ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 189s Setting up librdmacm1t64:arm64 (52.0-2ubuntu1) ... 189s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 189s Setting up libsz2:arm64 (1.1.3-1) ... 189s Setting up libdrm-amdgpu1:arm64 (2.4.123-1) ... 189s Setting up libfabric1:arm64 (1.17.0-3ubuntu1) ... 189s Setting up liblapack3:arm64 (3.12.0-3build2) ... 189s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 189s Setting up libhwloc-plugins:arm64 (2.11.2-1) ... 189s Setting up libpmix2t64:arm64 (5.0.3-2) ... 189s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ... 191s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 191s Setting up libhsakmt1:arm64 (5.7.0-1build1) ... 191s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 191s Setting up python3-h5py-serial (3.11.0-8ubuntu1) ... 191s Setting up python3-h5py (3.11.0-8ubuntu1) ... 191s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 191s Setting up libamdhip64-5 (5.7.1-5) ... 191s Setting up libucx0:arm64 (1.17.0+ds-3build1) ... 191s Setting up libopenmpi3t64:arm64 (5.0.5-6) ... 191s Setting up libhdf5-openmpi-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 191s Setting up bitshuffle (0.5.1-2) ... 192s Setting up autopkgtest-satdep (0) ... 192s Processing triggers for man-db (2.13.0-1) ... 192s Processing triggers for libc-bin (2.40-1ubuntu3) ... 196s (Reading database ... 81335 files and directories currently installed.) 196s Removing autopkgtest-satdep (0) ... 197s autopkgtest [16:36:23]: test command1: python3 -c 'import sys, h5py; sys.exit(not h5py.h5z.filter_avail(32008))' 197s autopkgtest [16:36:23]: test command1: [----------------------- 198s autopkgtest [16:36:24]: test command1: -----------------------] 198s autopkgtest [16:36:24]: test command1: - - - - - - - - - - results - - - - - - - - - - 198s command1 PASS 198s autopkgtest [16:36:24]: test command2: preparing testbed 201s Reading package lists... 201s Building dependency tree... 201s Reading state information... 202s Starting pkgProblemResolver with broken count: 0 202s Starting 2 pkgProblemResolver with broken count: 0 202s Done 203s The following NEW packages will be installed: 203s autopkgtest-satdep 203s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 203s Need to get 0 B/712 B of archives. 203s After this operation, 0 B of additional disk space will be used. 203s Get:1 /tmp/autopkgtest.32dJW1/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [712 B] 203s Selecting previously unselected package autopkgtest-satdep. 203s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81335 files and directories currently installed.) 203s Preparing to unpack .../2-autopkgtest-satdep.deb ... 203s Unpacking autopkgtest-satdep (0) ... 203s Setting up autopkgtest-satdep (0) ... 206s (Reading database ... 81335 files and directories currently installed.) 206s Removing autopkgtest-satdep (0) ... 206s autopkgtest [16:36:32]: test command2: H5PY_ALWAYS_USE_MPI=1 python3 -c 'import sys, h5py; sys.exit(not h5py.h5z.filter_avail(32008))' 206s autopkgtest [16:36:32]: test command2: [----------------------- 207s autopkgtest [16:36:33]: test command2: -----------------------] 207s command2 PASS 207s autopkgtest [16:36:33]: test command2: - - - - - - - - - - results - - - - - - - - - - 208s autopkgtest [16:36:34]: test testsuite: preparing testbed 285s autopkgtest [16:37:51]: testbed dpkg architecture: arm64 285s autopkgtest [16:37:51]: testbed apt version: 2.9.8 285s autopkgtest [16:37:51]: @@@@@@@@@@@@@@@@@@@@ test bed setup 286s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 286s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [814 kB] 287s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [71.7 kB] 287s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 287s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.5 kB] 287s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [103 kB] 287s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 287s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [638 kB] 287s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [6696 B] 287s Fetched 1778 kB in 1s (1928 kB/s) 287s Reading package lists... 290s Reading package lists... 290s Building dependency tree... 290s Reading state information... 291s Calculating upgrade... 292s The following NEW packages will be installed: 292s liblsof0 292s The following packages will be upgraded: 292s libnvme1t64 linux-firmware lsof 292s 3 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 292s Need to get 538 MB of archives. 292s After this operation, 1548 kB of additional disk space will be used. 292s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsof0 arm64 4.99.3+dfsg-2 [53.5 kB] 292s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 lsof arm64 4.99.3+dfsg-2 [235 kB] 292s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libnvme1t64 arm64 1.11.1-1 [83.7 kB] 292s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 linux-firmware arm64 20241118.git6e4e94b0-0ubuntu1 [537 MB] 309s Fetched 538 MB in 17s (32.2 MB/s) 309s Selecting previously unselected package liblsof0. 309s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79972 files and directories currently installed.) 309s Preparing to unpack .../liblsof0_4.99.3+dfsg-2_arm64.deb ... 309s Unpacking liblsof0 (4.99.3+dfsg-2) ... 309s Preparing to unpack .../lsof_4.99.3+dfsg-2_arm64.deb ... 309s Unpacking lsof (4.99.3+dfsg-2) over (4.95.0-1.1) ... 309s Preparing to unpack .../libnvme1t64_1.11.1-1_arm64.deb ... 309s Unpacking libnvme1t64 (1.11.1-1) over (1.11-2) ... 309s Preparing to unpack .../linux-firmware_20241118.git6e4e94b0-0ubuntu1_arm64.deb ... 309s Unpacking linux-firmware (20241118.git6e4e94b0-0ubuntu1) over (20241108.git3bbb13a7-0ubuntu1) ... 312s Setting up linux-firmware (20241118.git6e4e94b0-0ubuntu1) ... 312s Setting up liblsof0 (4.99.3+dfsg-2) ... 312s Setting up libnvme1t64 (1.11.1-1) ... 312s Setting up lsof (4.99.3+dfsg-2) ... 312s Processing triggers for man-db (2.13.0-1) ... 313s Processing triggers for libc-bin (2.40-1ubuntu3) ... 313s Processing triggers for initramfs-tools (0.142ubuntu35) ... 313s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic 313s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 331s System running in EFI mode, skipping. 332s Reading package lists... 332s Building dependency tree... 332s Reading state information... 333s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 333s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 333s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 333s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 333s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 334s Reading package lists... 334s Reading package lists... 335s Building dependency tree... 335s Reading state information... 335s Calculating upgrade... 336s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 336s Reading package lists... 336s Building dependency tree... 336s Reading state information... 337s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 337s autopkgtest [16:38:43]: rebooting testbed after setup commands that affected boot 365s Reading package lists... 365s Building dependency tree... 365s Reading state information... 365s Starting pkgProblemResolver with broken count: 0 365s Starting 2 pkgProblemResolver with broken count: 0 365s Done 366s The following additional packages will be installed: 366s bitshuffle hdf5-tools libaec0 libamd-comgr2 libamdhip64-5 libblas3 366s libdrm-amdgpu1 libevent-pthreads-2.1-7t64 libfabric1 libgfortran5 libgomp1 366s libhdf5-103-1t64 libhdf5-hl-100t64 libhdf5-openmpi-103-1t64 366s libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 libibmad5 366s libibumad3 liblapack3 libllvm17t64 liblzf1 libmunge2 libopenmpi3t64 366s libpciaccess0 libpmix2t64 librdmacm1t64 libsz2 libucx0 libxnvctrl0 366s ocl-icd-libopencl1 python3-all python3-h5py python3-h5py-serial 366s python3-iniconfig python3-numpy python3-packaging python3-pluggy 366s python3-pytest 366s Suggested packages: 366s opencl-icd python-h5py-doc gcc gfortran python-numpy-doc python3-dev 366s The following NEW packages will be installed: 366s autopkgtest-satdep bitshuffle hdf5-tools libaec0 libamd-comgr2 libamdhip64-5 366s libblas3 libdrm-amdgpu1 libevent-pthreads-2.1-7t64 libfabric1 libgfortran5 366s libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 libhdf5-openmpi-103-1t64 366s libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 libibmad5 366s libibumad3 liblapack3 libllvm17t64 liblzf1 libmunge2 libopenmpi3t64 366s libpciaccess0 libpmix2t64 librdmacm1t64 libsz2 libucx0 libxnvctrl0 366s ocl-icd-libopencl1 python3-all python3-h5py python3-h5py-serial 366s python3-iniconfig python3-numpy python3-packaging python3-pluggy 366s python3-pytest 366s 0 upgraded, 41 newly installed, 0 to remove and 0 not upgraded. 366s Need to get 65.8 MB/65.8 MB of archives. 366s After this operation, 285 MB of additional disk space will be used. 366s Get:1 /tmp/autopkgtest.32dJW1/3-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [728 B] 366s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 367s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB] 367s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 367s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11ubuntu1 [4149 kB] 367s Get:6 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 367s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 367s Get:8 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4ubuntu3 [1207 kB] 367s Get:9 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4ubuntu3 [56.9 kB] 367s Get:10 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 367s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 python3-h5py-serial arm64 3.11.0-8ubuntu1 [1449 kB] 367s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 python3-h5py all 3.11.0-8ubuntu1 [7982 B] 367s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB] 367s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10 [7922 B] 367s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 librdmacm1t64 arm64 52.0-2ubuntu1 [71.5 kB] 367s Get:16 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfabric1 arm64 1.17.0-3ubuntu1 [542 kB] 367s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhwloc15 arm64 2.11.2-1 [162 kB] 367s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmunge2 arm64 0.5.15-4build1 [14.9 kB] 367s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libpciaccess0 arm64 0.17-3build1 [18.9 kB] 367s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu4 [12.4 kB] 367s Get:21 http://ftpmaster.internal/ubuntu plucky/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1build1 [37.6 kB] 367s Get:22 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhwloc-plugins arm64 2.11.2-1 [15.8 kB] 367s Get:23 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpmix2t64 arm64 5.0.3-2 [662 kB] 367s Get:24 http://ftpmaster.internal/ubuntu plucky/universe arm64 libllvm17t64 arm64 1:17.0.6-18 [24.9 MB] 368s Get:25 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3build2 [14.1 MB] 368s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libdrm-amdgpu1 arm64 2.4.123-1 [20.9 kB] 368s Get:27 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhsakmt1 arm64 5.7.0-1build1 [63.6 kB] 368s Get:28 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhsa-runtime64-1 arm64 5.7.1-2build1 [286 kB] 368s Get:29 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamdhip64-5 arm64 5.7.1-5 [9704 kB] 369s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libibumad3 arm64 52.0-2ubuntu1 [29.3 kB] 369s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libibmad5 arm64 52.0-2ubuntu1 [43.1 kB] 369s Get:32 http://ftpmaster.internal/ubuntu plucky/universe arm64 libucx0 arm64 1.17.0+ds-3build1 [1093 kB] 369s Get:33 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 libopenmpi3t64 arm64 5.0.5-6 [2041 kB] 369s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-openmpi-103-1t64 arm64 1.10.10+repack-4ubuntu3 [1258 kB] 369s Get:35 http://ftpmaster.internal/ubuntu plucky/universe arm64 bitshuffle arm64 0.5.1-2 [154 kB] 369s Get:36 http://ftpmaster.internal/ubuntu plucky/universe arm64 hdf5-tools arm64 1.10.10+repack-4ubuntu3 [319 kB] 369s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-all arm64 3.12.6-0ubuntu1 [886 B] 369s Get:38 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 369s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.2-1 [51.5 kB] 369s Get:40 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 369s Get:41 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB] 369s Fetched 65.8 MB in 3s (26.0 MB/s) 369s Selecting previously unselected package libblas3:arm64. 370s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80002 files and directories currently installed.) 370s Preparing to unpack .../00-libblas3_3.12.0-3build2_arm64.deb ... 370s Unpacking libblas3:arm64 (3.12.0-3build2) ... 370s Selecting previously unselected package libgfortran5:arm64. 370s Preparing to unpack .../01-libgfortran5_14.2.0-8ubuntu1_arm64.deb ... 370s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ... 370s Selecting previously unselected package liblapack3:arm64. 370s Preparing to unpack .../02-liblapack3_3.12.0-3build2_arm64.deb ... 370s Unpacking liblapack3:arm64 (3.12.0-3build2) ... 370s Selecting previously unselected package python3-numpy. 370s Preparing to unpack .../03-python3-numpy_1%3a1.26.4+ds-11ubuntu1_arm64.deb ... 370s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 370s Selecting previously unselected package libaec0:arm64. 370s Preparing to unpack .../04-libaec0_1.1.3-1_arm64.deb ... 370s Unpacking libaec0:arm64 (1.1.3-1) ... 370s Selecting previously unselected package libsz2:arm64. 370s Preparing to unpack .../05-libsz2_1.1.3-1_arm64.deb ... 370s Unpacking libsz2:arm64 (1.1.3-1) ... 370s Selecting previously unselected package libhdf5-103-1t64:arm64. 370s Preparing to unpack .../06-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_arm64.deb ... 370s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 370s Selecting previously unselected package libhdf5-hl-100t64:arm64. 370s Preparing to unpack .../07-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_arm64.deb ... 370s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 370s Selecting previously unselected package liblzf1:arm64. 370s Preparing to unpack .../08-liblzf1_3.6-4_arm64.deb ... 370s Unpacking liblzf1:arm64 (3.6-4) ... 370s Selecting previously unselected package python3-h5py-serial. 370s Preparing to unpack .../09-python3-h5py-serial_3.11.0-8ubuntu1_arm64.deb ... 370s Unpacking python3-h5py-serial (3.11.0-8ubuntu1) ... 370s Selecting previously unselected package python3-h5py. 370s Preparing to unpack .../10-python3-h5py_3.11.0-8ubuntu1_all.deb ... 370s Unpacking python3-h5py (3.11.0-8ubuntu1) ... 370s Selecting previously unselected package libgomp1:arm64. 370s Preparing to unpack .../11-libgomp1_14.2.0-8ubuntu1_arm64.deb ... 370s Unpacking libgomp1:arm64 (14.2.0-8ubuntu1) ... 370s Selecting previously unselected package libevent-pthreads-2.1-7t64:arm64. 370s Preparing to unpack .../12-libevent-pthreads-2.1-7t64_2.1.12-stable-10_arm64.deb ... 370s Unpacking libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 370s Selecting previously unselected package librdmacm1t64:arm64. 370s Preparing to unpack .../13-librdmacm1t64_52.0-2ubuntu1_arm64.deb ... 370s Unpacking librdmacm1t64:arm64 (52.0-2ubuntu1) ... 370s Selecting previously unselected package libfabric1:arm64. 370s Preparing to unpack .../14-libfabric1_1.17.0-3ubuntu1_arm64.deb ... 370s Unpacking libfabric1:arm64 (1.17.0-3ubuntu1) ... 370s Selecting previously unselected package libhwloc15:arm64. 370s Preparing to unpack .../15-libhwloc15_2.11.2-1_arm64.deb ... 370s Unpacking libhwloc15:arm64 (2.11.2-1) ... 370s Selecting previously unselected package libmunge2:arm64. 370s Preparing to unpack .../16-libmunge2_0.5.15-4build1_arm64.deb ... 370s Unpacking libmunge2:arm64 (0.5.15-4build1) ... 370s Selecting previously unselected package libpciaccess0:arm64. 370s Preparing to unpack .../17-libpciaccess0_0.17-3build1_arm64.deb ... 370s Unpacking libpciaccess0:arm64 (0.17-3build1) ... 371s Selecting previously unselected package libxnvctrl0:arm64. 371s Preparing to unpack .../18-libxnvctrl0_510.47.03-0ubuntu4_arm64.deb ... 371s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 371s Selecting previously unselected package ocl-icd-libopencl1:arm64. 371s Preparing to unpack .../19-ocl-icd-libopencl1_2.3.2-1build1_arm64.deb ... 371s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 371s Selecting previously unselected package libhwloc-plugins:arm64. 371s Preparing to unpack .../20-libhwloc-plugins_2.11.2-1_arm64.deb ... 371s Unpacking libhwloc-plugins:arm64 (2.11.2-1) ... 371s Selecting previously unselected package libpmix2t64:arm64. 371s Preparing to unpack .../21-libpmix2t64_5.0.3-2_arm64.deb ... 371s Unpacking libpmix2t64:arm64 (5.0.3-2) ... 371s Selecting previously unselected package libllvm17t64:arm64. 371s Preparing to unpack .../22-libllvm17t64_1%3a17.0.6-18_arm64.deb ... 371s Unpacking libllvm17t64:arm64 (1:17.0.6-18) ... 371s Selecting previously unselected package libamd-comgr2:arm64. 371s Preparing to unpack .../23-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_arm64.deb ... 371s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 372s Selecting previously unselected package libdrm-amdgpu1:arm64. 372s Preparing to unpack .../24-libdrm-amdgpu1_2.4.123-1_arm64.deb ... 372s Unpacking libdrm-amdgpu1:arm64 (2.4.123-1) ... 372s Selecting previously unselected package libhsakmt1:arm64. 372s Preparing to unpack .../25-libhsakmt1_5.7.0-1build1_arm64.deb ... 372s Unpacking libhsakmt1:arm64 (5.7.0-1build1) ... 372s Selecting previously unselected package libhsa-runtime64-1. 372s Preparing to unpack .../26-libhsa-runtime64-1_5.7.1-2build1_arm64.deb ... 372s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 372s Selecting previously unselected package libamdhip64-5. 372s Preparing to unpack .../27-libamdhip64-5_5.7.1-5_arm64.deb ... 372s Unpacking libamdhip64-5 (5.7.1-5) ... 372s Selecting previously unselected package libibumad3:arm64. 372s Preparing to unpack .../28-libibumad3_52.0-2ubuntu1_arm64.deb ... 372s Unpacking libibumad3:arm64 (52.0-2ubuntu1) ... 372s Selecting previously unselected package libibmad5:arm64. 372s Preparing to unpack .../29-libibmad5_52.0-2ubuntu1_arm64.deb ... 372s Unpacking libibmad5:arm64 (52.0-2ubuntu1) ... 372s Selecting previously unselected package libucx0:arm64. 372s Preparing to unpack .../30-libucx0_1.17.0+ds-3build1_arm64.deb ... 372s Unpacking libucx0:arm64 (1.17.0+ds-3build1) ... 372s Selecting previously unselected package libopenmpi3t64:arm64. 372s Preparing to unpack .../31-libopenmpi3t64_5.0.5-6_arm64.deb ... 372s Unpacking libopenmpi3t64:arm64 (5.0.5-6) ... 372s Selecting previously unselected package libhdf5-openmpi-103-1t64:arm64. 372s Preparing to unpack .../32-libhdf5-openmpi-103-1t64_1.10.10+repack-4ubuntu3_arm64.deb ... 372s Unpacking libhdf5-openmpi-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 372s Selecting previously unselected package bitshuffle. 372s Preparing to unpack .../33-bitshuffle_0.5.1-2_arm64.deb ... 372s Unpacking bitshuffle (0.5.1-2) ... 372s Selecting previously unselected package hdf5-tools. 372s Preparing to unpack .../34-hdf5-tools_1.10.10+repack-4ubuntu3_arm64.deb ... 372s Unpacking hdf5-tools (1.10.10+repack-4ubuntu3) ... 372s Selecting previously unselected package python3-all. 372s Preparing to unpack .../35-python3-all_3.12.6-0ubuntu1_arm64.deb ... 372s Unpacking python3-all (3.12.6-0ubuntu1) ... 372s Selecting previously unselected package python3-iniconfig. 372s Preparing to unpack .../36-python3-iniconfig_1.1.1-2_all.deb ... 372s Unpacking python3-iniconfig (1.1.1-2) ... 372s Selecting previously unselected package python3-packaging. 372s Preparing to unpack .../37-python3-packaging_24.2-1_all.deb ... 372s Unpacking python3-packaging (24.2-1) ... 372s Selecting previously unselected package python3-pluggy. 372s Preparing to unpack .../38-python3-pluggy_1.5.0-1_all.deb ... 372s Unpacking python3-pluggy (1.5.0-1) ... 372s Selecting previously unselected package python3-pytest. 372s Preparing to unpack .../39-python3-pytest_8.3.3-1_all.deb ... 372s Unpacking python3-pytest (8.3.3-1) ... 372s Selecting previously unselected package autopkgtest-satdep. 372s Preparing to unpack .../40-3-autopkgtest-satdep.deb ... 372s Unpacking autopkgtest-satdep (0) ... 373s Setting up python3-iniconfig (1.1.1-2) ... 373s Setting up libpciaccess0:arm64 (0.17-3build1) ... 373s Setting up libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 373s Setting up libibumad3:arm64 (52.0-2ubuntu1) ... 373s Setting up python3-all (3.12.6-0ubuntu1) ... 373s Setting up libibmad5:arm64 (52.0-2ubuntu1) ... 373s Setting up libgomp1:arm64 (14.2.0-8ubuntu1) ... 373s Setting up libaec0:arm64 (1.1.3-1) ... 373s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 373s Setting up libblas3:arm64 (3.12.0-3build2) ... 373s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 373s Setting up python3-packaging (24.2-1) ... 373s Setting up libmunge2:arm64 (0.5.15-4build1) ... 373s Setting up libllvm17t64:arm64 (1:17.0.6-18) ... 373s Setting up liblzf1:arm64 (3.6-4) ... 373s Setting up libhwloc15:arm64 (2.11.2-1) ... 373s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ... 373s Setting up python3-pluggy (1.5.0-1) ... 373s Setting up ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 373s Setting up librdmacm1t64:arm64 (52.0-2ubuntu1) ... 373s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 373s Setting up libsz2:arm64 (1.1.3-1) ... 373s Setting up libdrm-amdgpu1:arm64 (2.4.123-1) ... 373s Setting up libfabric1:arm64 (1.17.0-3ubuntu1) ... 373s Setting up liblapack3:arm64 (3.12.0-3build2) ... 373s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 373s Setting up python3-pytest (8.3.3-1) ... 373s Setting up libhwloc-plugins:arm64 (2.11.2-1) ... 373s Setting up libpmix2t64:arm64 (5.0.3-2) ... 373s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ... 375s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 375s Setting up libhsakmt1:arm64 (5.7.0-1build1) ... 375s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 375s Setting up python3-h5py-serial (3.11.0-8ubuntu1) ... 376s Setting up hdf5-tools (1.10.10+repack-4ubuntu3) ... 376s Setting up python3-h5py (3.11.0-8ubuntu1) ... 376s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 376s Setting up libamdhip64-5 (5.7.1-5) ... 376s Setting up libucx0:arm64 (1.17.0+ds-3build1) ... 376s Setting up libopenmpi3t64:arm64 (5.0.5-6) ... 376s Setting up libhdf5-openmpi-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 376s Setting up bitshuffle (0.5.1-2) ... 376s Setting up autopkgtest-satdep (0) ... 376s Processing triggers for man-db (2.13.0-1) ... 377s Processing triggers for libc-bin (2.40-1ubuntu3) ... 381s (Reading database ... 81539 files and directories currently installed.) 381s Removing autopkgtest-satdep (0) ... 382s autopkgtest [16:39:28]: test testsuite: [----------------------- 383s 'tests' -> '/tmp/autopkgtest.32dJW1/autopkgtest_tmp/tests' 383s 'tests/test_ext.py' -> '/tmp/autopkgtest.32dJW1/autopkgtest_tmp/tests/test_ext.py' 383s 'tests/test_regression.py' -> '/tmp/autopkgtest.32dJW1/autopkgtest_tmp/tests/test_regression.py' 383s 'tests/test_h5plugin.py' -> '/tmp/autopkgtest.32dJW1/autopkgtest_tmp/tests/test_h5plugin.py' 383s 'tests/data' -> '/tmp/autopkgtest.32dJW1/autopkgtest_tmp/tests/data' 383s 'tests/data/regression_0.4.0.h5' -> '/tmp/autopkgtest.32dJW1/autopkgtest_tmp/tests/data/regression_0.4.0.h5' 383s 'tests/data/regression_0.1.3.h5' -> '/tmp/autopkgtest.32dJW1/autopkgtest_tmp/tests/data/regression_0.1.3.h5' 383s 'tests/make_regression_tdata.py' -> '/tmp/autopkgtest.32dJW1/autopkgtest_tmp/tests/make_regression_tdata.py' 383s 'tests/test_h5filter.py' -> '/tmp/autopkgtest.32dJW1/autopkgtest_tmp/tests/test_h5filter.py' 383s [*] testing on python3.12: 383s ============================= test session starts ============================== 383s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.12 383s cachedir: .pytest_cache 383s rootdir: /tmp/autopkgtest.32dJW1/autopkgtest_tmp 383s plugins: typeguard-4.4.1 383s collecting ... collected 80 items 383s 383s tests/test_ext.py::TestProfile::test_00_copy PASSED [ 1%] 383s tests/test_ext.py::TestProfile::test_01a_trans_byte_elem_scal_16 PASSED [ 2%] 383s tests/test_ext.py::TestProfile::test_01b_trans_byte_elem_scal_32 PASSED [ 3%] 383s tests/test_ext.py::TestProfile::test_01c_trans_byte_elem_scal_64 PASSED [ 5%] 383s tests/test_ext.py::TestProfile::test_01d_trans_byte_elem_16 PASSED [ 6%] 383s tests/test_ext.py::TestProfile::test_01e_trans_byte_elem_32 PASSED [ 7%] 383s tests/test_ext.py::TestProfile::test_01f_trans_byte_elem_64 PASSED [ 8%] 383s tests/test_ext.py::TestProfile::test_01g_trans_byte_elem_128 PASSED [ 10%] 383s tests/test_ext.py::TestProfile::test_01h_trans_byte_elem_96 PASSED [ 11%] 383s tests/test_ext.py::TestProfile::test_01i_trans_byte_elem_80 PASSED [ 12%] 383s tests/test_ext.py::TestProfile::test_03a_trans_bit_byte PASSED [ 13%] 383s tests/test_ext.py::TestProfile::test_03d_trans_bit_byte_SSE PASSED [ 15%] 383s tests/test_ext.py::TestProfile::test_03f_trans_bit_byte_AVX PASSED [ 16%] 383s tests/test_ext.py::TestProfile::test_03g_trans_bit_byte_AVX512_32 PASSED [ 17%] 383s tests/test_ext.py::TestProfile::test_03g_trans_bit_byte_AVX_32 PASSED [ 18%] 383s tests/test_ext.py::TestProfile::test_03h_trans_bit_byte_AVX512 PASSED [ 20%] 383s tests/test_ext.py::TestProfile::test_04a_trans_bit_elem_AVX PASSED [ 21%] 383s tests/test_ext.py::TestProfile::test_04b_trans_bit_elem_AVX_128 PASSED [ 22%] 383s tests/test_ext.py::TestProfile::test_04c_trans_bit_elem_AVX_32 PASSED [ 23%] 383s tests/test_ext.py::TestProfile::test_04d_trans_bit_elem_AVX_16 PASSED [ 25%] 383s tests/test_ext.py::TestProfile::test_04e_trans_bit_elem_64 PASSED [ 26%] 383s tests/test_ext.py::TestProfile::test_04f_trans_bit_elem_SSE_32 PASSED [ 27%] 383s tests/test_ext.py::TestProfile::test_04g_trans_bit_elem_SSE_64 PASSED [ 28%] 383s tests/test_ext.py::TestProfile::test_04h_trans_bit_elem_AVX512 PASSED [ 30%] 383s tests/test_ext.py::TestProfile::test_04i_trans_bit_elem_AVX512 PASSED [ 31%] 383s tests/test_ext.py::TestProfile::test_04j_trans_bit_elem_AVX512_32 PASSED [ 32%] 383s tests/test_ext.py::TestProfile::test_04k_trans_bit_elem_AVX512_16 PASSED [ 33%] 383s tests/test_ext.py::TestProfile::test_06a_untrans_bit_elem_16 PASSED [ 35%] 383s tests/test_ext.py::TestProfile::test_06b_untrans_bit_elem_128 PASSED [ 36%] 383s tests/test_ext.py::TestProfile::test_06c_untrans_bit_elem_32 PASSED [ 37%] 383s tests/test_ext.py::TestProfile::test_06d_untrans_bit_elem_32 PASSED [ 38%] 383s tests/test_ext.py::TestProfile::test_06e_untrans_bit_elem_64 PASSED [ 40%] 383s tests/test_ext.py::TestProfile::test_06f_untrans_bit_elem_64 PASSED [ 41%] 383s tests/test_ext.py::TestProfile::test_06g_untrans_bit_elem_64 PASSED [ 42%] 383s tests/test_ext.py::TestProfile::test_06h_untrans_bit_elem_32 PASSED [ 43%] 383s tests/test_ext.py::TestProfile::test_06i_untrans_bit_elem_64 PASSED [ 45%] 383s tests/test_ext.py::TestProfile::test_07a_trans_byte_bitrow_64 PASSED [ 46%] 383s tests/test_ext.py::TestProfile::test_07b_trans_byte_bitrow_SSE_64 PASSED [ 47%] 383s tests/test_ext.py::TestProfile::test_07c_trans_byte_bitrow_AVX_64 PASSED [ 48%] 383s tests/test_ext.py::TestProfile::test_08a_shuffle_bit_eight_scal_64 PASSED [ 50%] 383s tests/test_ext.py::TestProfile::test_08b_shuffle_bit_eight_SSE_64 PASSED [ 51%] 383s tests/test_ext.py::TestProfile::test_08c_shuffle_bit_eight_AVX_32 PASSED [ 52%] 383s tests/test_ext.py::TestProfile::test_08d_shuffle_bit_eight_AVX_64 PASSED [ 53%] 383s tests/test_ext.py::TestProfile::test_08e_shuffle_bit_eight_AVX_16 PASSED [ 55%] 383s tests/test_ext.py::TestProfile::test_08f_shuffle_bit_eight_AVX_128 PASSED [ 56%] 383s tests/test_ext.py::TestProfile::test_08g_shuffle_bit_eight_AVX512_32 PASSED [ 57%] 383s tests/test_ext.py::TestProfile::test_08h_shuffle_bit_eight_AVX512_64 PASSED [ 58%] 383s tests/test_ext.py::TestProfile::test_08i_shuffle_bit_eight_AVX512_128 PASSED [ 60%] 383s tests/test_ext.py::TestProfile::test_08i_shuffle_bit_eight_AVX512_16 PASSED [ 61%] 383s tests/test_ext.py::TestProfile::test_09a_trans_bit_elem_scal_64 PASSED [ 62%] 383s tests/test_ext.py::TestProfile::test_09b_trans_bit_elem_SSE_64 PASSED [ 63%] 383s tests/test_ext.py::TestProfile::test_09c_trans_bit_elem_AVX_64 PASSED [ 65%] 383s tests/test_ext.py::TestProfile::test_09d_untrans_bit_elem_scal_64 PASSED [ 66%] 383s tests/test_ext.py::TestProfile::test_09e_untrans_bit_elem_SSE_64 PASSED [ 67%] 383s tests/test_ext.py::TestProfile::test_09f_untrans_bit_elem_AVX_64 PASSED [ 68%] 383s tests/test_ext.py::TestProfile::test_09g_untrans_bit_elem_AVX_64 PASSED [ 70%] 383s tests/test_ext.py::TestProfile::test_10a_bitshuffle_64 PASSED [ 71%] 383s tests/test_ext.py::TestProfile::test_10b_bitunshuffle_64 PASSED [ 72%] 383s tests/test_ext.py::TestProfile::test_10c_compress_64 PASSED [ 73%] 383s tests/test_ext.py::TestProfile::test_10c_compress_z64 PASSED [ 75%] 383s tests/test_ext.py::TestProfile::test_10d_decompress_64 PASSED [ 76%] 383s tests/test_ext.py::TestProfile::test_10d_decompress_z64 PASSED [ 77%] 383s tests/test_ext.py::TestOddLengths::test_trans_bit_elem_AVX PASSED [ 78%] 383s tests/test_ext.py::TestOddLengths::test_trans_bit_elem_AVX512 PASSED [ 80%] 383s tests/test_ext.py::TestOddLengths::test_trans_bit_elem_SSE PASSED [ 81%] 383s tests/test_ext.py::TestOddLengths::test_trans_bit_elem_scal PASSED [ 82%] 383s tests/test_ext.py::TestOddLengths::test_trans_byte_elem_SSE PASSED [ 83%] 383s tests/test_ext.py::TestOddLengths::test_untrans_bit_elem_AVX PASSED [ 85%] 383s tests/test_ext.py::TestOddLengths::test_untrans_bit_elem_AVX512 PASSED [ 86%] 383s tests/test_ext.py::TestOddLengths::test_untrans_bit_elem_SSE PASSED [ 87%] 383s tests/test_ext.py::TestOddLengths::test_untrans_bit_elem_scal PASSED [ 88%] 384s tests/test_ext.py::TestBitShuffleCircle::test_circle PASSED [ 90%] 386s tests/test_ext.py::TestBitShuffleCircle::test_circle_with_compression PASSED [ 91%] 387s tests/test_ext.py::TestBitShuffleCircle::test_circle_with_zstd_compression PASSED [ 92%] 387s tests/test_h5filter.py::TestFilter::test_filter PASSED [ 93%] 387s tests/test_h5filter.py::TestFilter::test_with_block_size PASSED [ 95%] 387s tests/test_h5filter.py::TestFilter::test_with_lz4_compression PASSED [ 96%] 387s tests/test_h5filter.py::TestFilter::test_with_zstd_compression PASSED [ 97%] 387s tests/test_h5plugin.py::TestFilterPlugins::test_plugins PASSED [ 98%] 387s tests/test_regression.py::TestAll::test_regression PASSED [100%] 387s 387s ============================== 80 passed in 4.02s ============================== 387s autopkgtest [16:39:33]: test testsuite: -----------------------] 388s testsuite PASS 388s autopkgtest [16:39:34]: test testsuite: - - - - - - - - - - results - - - - - - - - - - 388s autopkgtest [16:39:34]: @@@@@@@@@@@@@@@@@@@@ summary 388s command1 PASS 388s command2 PASS 388s testsuite PASS 400s nova [W] Skipping flock in bos03-arm64 400s Creating nova instance adt-plucky-arm64-bitshuffle-20241118-163306-juju-7f2275-prod-proposed-migration-environment-20-37695292-0e3d-4e2e-82d3-4bf4081ff1a5 from image adt/ubuntu-plucky-arm64-server-20241117.img (UUID 346584db-208f-4446-ae16-5eaab5e37305)... 400s nova [W] Skipping flock in bos03-arm64 400s Creating nova instance adt-plucky-arm64-bitshuffle-20241118-163306-juju-7f2275-prod-proposed-migration-environment-20-37695292-0e3d-4e2e-82d3-4bf4081ff1a5 from image adt/ubuntu-plucky-arm64-server-20241117.img (UUID 346584db-208f-4446-ae16-5eaab5e37305)...