0s autopkgtest [09:34:51]: starting date and time: 2024-12-03 09:34:51+0000 0s autopkgtest [09:34:51]: git checkout: be626eda Fix armhf LXD image generation for plucky 0s autopkgtest [09:34:51]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.3sp7_bse/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:numcodecs,src:python3-defaults --apt-upgrade zarr --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=numcodecs/0.14.1+ds-1 python3-defaults/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-6.secgroup --name adt-plucky-amd64-zarr-20241203-093450-juju-7f2275-prod-proposed-migration-environment-2-8685e6f9-20eb-4381-a0a4-ceb7f09998de --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 395s autopkgtest [09:41:26]: testbed dpkg architecture: amd64 395s autopkgtest [09:41:26]: testbed apt version: 2.9.14ubuntu1 395s autopkgtest [09:41:26]: @@@@@@@@@@@@@@@@@@@@ test bed setup 395s autopkgtest [09:41:26]: testbed release detected to be: None 396s autopkgtest [09:41:27]: updating testbed package index (apt update) 396s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 397s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 397s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 397s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 397s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [781 kB] 397s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [65.3 kB] 397s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.1 kB] 397s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 397s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [153 kB] 397s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [104 kB] 397s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2572 B] 397s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [40.6 kB] 397s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [687 kB] 397s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [256 kB] 397s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [21.9 kB] 397s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [6364 B] 397s Fetched 2217 kB in 1s (2216 kB/s) 398s Reading package lists... 399s Reading package lists... 399s Building dependency tree... 399s Reading state information... 399s Calculating upgrade... 400s The following packages will be upgraded: 400s gcc-14-base libatomic1 libgcc-s1 libstdc++6 400s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 400s Need to get 928 kB of archives. 400s After this operation, 1024 B of additional disk space will be used. 400s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 14.2.0-9ubuntu1 [10.3 kB] 400s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-base amd64 14.2.0-9ubuntu1 [52.0 kB] 400s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 14.2.0-9ubuntu1 [788 kB] 400s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 14.2.0-9ubuntu1 [78.4 kB] 400s Fetched 928 kB in 1s (1679 kB/s) 401s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75952 files and directories currently installed.) 401s Preparing to unpack .../libatomic1_14.2.0-9ubuntu1_amd64.deb ... 401s Unpacking libatomic1:amd64 (14.2.0-9ubuntu1) over (14.2.0-8ubuntu1) ... 401s Preparing to unpack .../gcc-14-base_14.2.0-9ubuntu1_amd64.deb ... 401s Unpacking gcc-14-base:amd64 (14.2.0-9ubuntu1) over (14.2.0-8ubuntu1) ... 401s Setting up gcc-14-base:amd64 (14.2.0-9ubuntu1) ... 401s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75952 files and directories currently installed.) 401s Preparing to unpack .../libstdc++6_14.2.0-9ubuntu1_amd64.deb ... 401s Unpacking libstdc++6:amd64 (14.2.0-9ubuntu1) over (14.2.0-8ubuntu1) ... 401s Setting up libstdc++6:amd64 (14.2.0-9ubuntu1) ... 401s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75952 files and directories currently installed.) 401s Preparing to unpack .../libgcc-s1_14.2.0-9ubuntu1_amd64.deb ... 401s Unpacking libgcc-s1:amd64 (14.2.0-9ubuntu1) over (14.2.0-8ubuntu1) ... 401s Setting up libgcc-s1:amd64 (14.2.0-9ubuntu1) ... 401s Setting up libatomic1:amd64 (14.2.0-9ubuntu1) ... 401s Processing triggers for libc-bin (2.40-1ubuntu3) ... 401s Reading package lists... 402s Building dependency tree... 402s Reading state information... 402s autopkgtest [09:41:33]: upgrading testbed (apt dist-upgrade and autopurge) 402s 0 upgraded, 0 newly installed, 0 to remove and 3 not upgraded. 402s Reading package lists... 402s Building dependency tree... 402s Reading state information... 403s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 403s Starting 2 pkgProblemResolver with broken count: 0 403s Done 403s Entering ResolveByKeep 404s 404s The following packages will be upgraded: 404s libpython3-stdlib python3 python3-minimal 404s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 404s Need to get 61.4 kB of archives. 404s After this operation, 0 B of additional disk space will be used. 404s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 404s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 404s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 404s Fetched 61.4 kB in 0s (223 kB/s) 404s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75952 files and directories currently installed.) 404s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 404s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 404s Setting up python3-minimal (3.12.7-1) ... 405s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75952 files and directories currently installed.) 405s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 405s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 405s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 405s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 405s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 405s Setting up python3 (3.12.7-1) ... 405s Processing triggers for man-db (2.13.0-1) ... 406s Reading package lists... 407s Building dependency tree... 407s Reading state information... 407s Starting pkgProblemResolver with broken count: 0 407s Starting 2 pkgProblemResolver with broken count: 0 407s Done 407s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 410s autopkgtest [09:41:41]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 410s autopkgtest [09:41:41]: @@@@@@@@@@@@@@@@@@@@ apt-source zarr 412s Get:1 http://ftpmaster.internal/ubuntu plucky/universe zarr 2.18.3+ds-2 (dsc) [2647 B] 412s Get:2 http://ftpmaster.internal/ubuntu plucky/universe zarr 2.18.3+ds-2 (tar) [984 kB] 412s Get:3 http://ftpmaster.internal/ubuntu plucky/universe zarr 2.18.3+ds-2 (diff) [5668 B] 412s gpgv: Signature made Wed Nov 27 08:45:27 2024 UTC 412s gpgv: using RSA key 3B70F209A5FFD68903C472C5EBF48AB2578F9812 412s gpgv: issuer "antonio.valentino@tiscali.it" 412s gpgv: Can't check signature: No public key 412s dpkg-source: warning: cannot verify inline signature for ./zarr_2.18.3+ds-2.dsc: no acceptable signature found 412s autopkgtest [09:41:43]: testing package zarr version 2.18.3+ds-2 413s autopkgtest [09:41:44]: build not needed 414s autopkgtest [09:41:45]: test pybuild-autopkgtest: preparing testbed 414s Reading package lists... 414s Building dependency tree... 414s Reading state information... 415s Starting pkgProblemResolver with broken count: 0 415s Starting 2 pkgProblemResolver with broken count: 0 415s Done 415s The following NEW packages will be installed: 415s autoconf automake autopoint autotools-dev build-essential cpp cpp-14 415s cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu debhelper debugedit 415s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz g++ 415s g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 415s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian libaec0 415s libarchive-zip-perl libasan8 libblas3 libblosc1 libcc1-0 libdebhelper-perl 415s libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 libgomp1 415s libhdf5-103-1t64 libhdf5-hl-100t64 libhwasan0 libisl23 libitm1 libjs-jquery 415s libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 liblsan0 liblzf1 415s libmpc3 libpython3.13-minimal libpython3.13-stdlib libquadmath0 libsnappy1v5 415s libstdc++-14-dev libsz2 libtool libtsan2 libubsan1 m4 po-debconf 415s pybuild-plugin-autopkgtest pybuild-plugin-pyproject python3-alabaster 415s python3-all python3-asciitree python3-bs4 python3-build python3-defusedxml 415s python3-docutils python3-fasteners python3-fsspec python3-h5py 415s python3-h5py-serial python3-imagesize python3-iniconfig python3-installer 415s python3-monotonic python3-msgpack python3-numcodecs python3-numpy 415s python3-numpydoc python3-packaging python3-pluggy 415s python3-pydata-sphinx-theme python3-pyproject-hooks python3-pytest 415s python3-pytest-doctestplus python3-pytest-timeout python3-roman 415s python3-setuptools-scm python3-snowballstemmer python3-soupsieve 415s python3-sphinx python3-sphinx-automodapi python3-sphinx-copybutton 415s python3-sphinx-design python3-sphinx-issues python3-tabulate python3-toml 415s python3-wheel python3-zarr python3.13 python3.13-minimal sphinx-common 415s 0 upgraded, 105 newly installed, 0 to remove and 0 not upgraded. 415s Need to get 94.1 MB of archives. 415s After this operation, 364 MB of additional disk space will be used. 415s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 416s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 416s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 m4 amd64 1.4.19-4build1 [244 kB] 416s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 autoconf all 2.72-3 [382 kB] 416s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 autotools-dev all 20220109.1 [44.9 kB] 416s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 416s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 autopoint all 0.22.5-2 [616 kB] 416s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 416s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 416s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-9ubuntu1 [11.9 MB] 417s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-9ubuntu1 [1032 B] 417s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 417s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 417s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-9ubuntu1 [47.6 kB] 417s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-9ubuntu1 [148 kB] 417s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-9ubuntu1 [28.9 kB] 417s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-9ubuntu1 [2998 kB] 417s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-9ubuntu1 [1316 kB] 417s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-9ubuntu1 [2732 kB] 417s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-9ubuntu1 [1177 kB] 417s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-9ubuntu1 [1634 kB] 417s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-9ubuntu1 [153 kB] 417s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-9ubuntu1 [2814 kB] 417s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-9ubuntu1 [23.4 MB] 418s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-9ubuntu1 [531 kB] 418s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 418s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 418s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-9ubuntu1 [2482 kB] 418s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-9ubuntu1 [13.4 MB] 418s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-9ubuntu1 [20.1 kB] 418s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 418s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 418s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 418s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 418s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libtool all 2.4.7-8 [166 kB] 418s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-autoreconf all 20 [16.1 kB] 418s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] 418s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 418s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-strip-nondeterminism all 1.14.0-1 [5058 B] 418s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 debugedit amd64 1:5.1-1 [46.9 kB] 418s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 dwz amd64 0.15-1build6 [115 kB] 418s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gettext amd64 0.22.5-2 [948 kB] 418s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 418s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] 418s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 debhelper all 13.20ubuntu1 [893 kB] 418s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 dh-python all 6.20241024 [112 kB] 418s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 docutils-common all 0.21.2+dfsg-2 [131 kB] 418s Get:48 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 418s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-4 [332 kB] 418s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libsnappy1v5 amd64 1.2.1-1 [30.4 kB] 418s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 libblosc1 amd64 1.21.5+ds-1build1 [36.2 kB] 418s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-9ubuntu1 [909 kB] 419s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 419s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1280 kB] 419s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4ubuntu3 [56.6 kB] 419s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 419s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 419s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 419s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libjson-perl all 4.10000-1 [81.9 kB] 419s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-4 [3177 kB] 419s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 419s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 419s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-autopkgtest all 6.20241024 [1746 B] 419s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.2-1 [51.5 kB] 419s Get:65 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 419s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-toml all 0.10.2-1 [16.5 kB] 419s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-wheel all 0.45.1-1 [57.7 kB] 419s Get:68 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-build all 1.2.2-1 [31.0 kB] 419s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 419s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-pyproject all 6.20241024 [1728 B] 419s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 419s Get:72 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 419s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-asciitree all 0.3.3-4 [5644 B] 419s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-soupsieve all 2.6-1 [33.0 kB] 419s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bs4 all 4.12.3-3 [109 kB] 419s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-defusedxml all 0.7.1-2 [42.0 kB] 419s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-roman all 4.2-1 [10.0 kB] 419s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-docutils all 0.21.2+dfsg-2 [409 kB] 419s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-monotonic all 1.6-2 [5732 B] 419s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-fasteners all 0.18-2 [12.5 kB] 419s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fsspec all 2024.9.0-1 [207 kB] 419s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11ubuntu1 [5319 kB] 419s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py-serial amd64 3.11.0-5ubuntu1 [1107 kB] 419s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py all 3.11.0-5ubuntu1 [7974 B] 419s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-imagesize all 1.4.1-1 [6844 B] 419s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 419s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-msgpack amd64 1.0.3-3build3 [113 kB] 419s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 sphinx-common all 7.4.7-4 [775 kB] 419s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-alabaster all 0.7.16-0.1 [18.5 kB] 419s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 419s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-sphinx all 7.4.7-4 [593 kB] 419s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pydata-sphinx-theme all 0.15.4+dfsg-2 [41.5 kB] 419s Get:93 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-numcodecs amd64 0.14.1+ds-1 [567 kB] 419s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tabulate all 0.9.0-1 [45.3 kB] 419s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-numpydoc all 1.8.0-1 [52.4 kB] 419s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 419s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 419s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest-doctestplus all 1.3.0-1 [23.7 kB] 419s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest-timeout all 2.3.1-1 [22.1 kB] 419s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-setuptools-scm all 8.1.0-1 [32.2 kB] 419s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinx-automodapi all 0.18.0-1 [37.6 kB] 419s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinx-copybutton all 0.5.2-2 [16.6 kB] 419s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinx-design all 0.6.1-1 [894 kB] 420s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinx-issues all 5.0.0-1 [10.2 kB] 420s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-zarr all 2.18.3+ds-2 [409 kB] 420s Fetched 94.1 MB in 5s (20.7 MB/s) 420s Selecting previously unselected package libpython3.13-minimal:amd64. 420s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75952 files and directories currently installed.) 420s Preparing to unpack .../000-libpython3.13-minimal_3.13.0-2_amd64.deb ... 420s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 420s Selecting previously unselected package python3.13-minimal. 420s Preparing to unpack .../001-python3.13-minimal_3.13.0-2_amd64.deb ... 420s Unpacking python3.13-minimal (3.13.0-2) ... 420s Selecting previously unselected package m4. 420s Preparing to unpack .../002-m4_1.4.19-4build1_amd64.deb ... 420s Unpacking m4 (1.4.19-4build1) ... 420s Selecting previously unselected package autoconf. 420s Preparing to unpack .../003-autoconf_2.72-3_all.deb ... 420s Unpacking autoconf (2.72-3) ... 420s Selecting previously unselected package autotools-dev. 420s Preparing to unpack .../004-autotools-dev_20220109.1_all.deb ... 420s Unpacking autotools-dev (20220109.1) ... 420s Selecting previously unselected package automake. 420s Preparing to unpack .../005-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 420s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 421s Selecting previously unselected package autopoint. 421s Preparing to unpack .../006-autopoint_0.22.5-2_all.deb ... 421s Unpacking autopoint (0.22.5-2) ... 421s Selecting previously unselected package libisl23:amd64. 421s Preparing to unpack .../007-libisl23_0.27-1_amd64.deb ... 421s Unpacking libisl23:amd64 (0.27-1) ... 421s Selecting previously unselected package libmpc3:amd64. 421s Preparing to unpack .../008-libmpc3_1.3.1-1build2_amd64.deb ... 421s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 421s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 421s Preparing to unpack .../009-cpp-14-x86-64-linux-gnu_14.2.0-9ubuntu1_amd64.deb ... 421s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-9ubuntu1) ... 421s Selecting previously unselected package cpp-14. 421s Preparing to unpack .../010-cpp-14_14.2.0-9ubuntu1_amd64.deb ... 421s Unpacking cpp-14 (14.2.0-9ubuntu1) ... 421s Selecting previously unselected package cpp-x86-64-linux-gnu. 421s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 421s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 421s Selecting previously unselected package cpp. 421s Preparing to unpack .../012-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ... 421s Unpacking cpp (4:14.1.0-2ubuntu1) ... 421s Selecting previously unselected package libcc1-0:amd64. 421s Preparing to unpack .../013-libcc1-0_14.2.0-9ubuntu1_amd64.deb ... 421s Unpacking libcc1-0:amd64 (14.2.0-9ubuntu1) ... 421s Selecting previously unselected package libgomp1:amd64. 421s Preparing to unpack .../014-libgomp1_14.2.0-9ubuntu1_amd64.deb ... 421s Unpacking libgomp1:amd64 (14.2.0-9ubuntu1) ... 421s Selecting previously unselected package libitm1:amd64. 421s Preparing to unpack .../015-libitm1_14.2.0-9ubuntu1_amd64.deb ... 421s Unpacking libitm1:amd64 (14.2.0-9ubuntu1) ... 421s Selecting previously unselected package libasan8:amd64. 421s Preparing to unpack .../016-libasan8_14.2.0-9ubuntu1_amd64.deb ... 421s Unpacking libasan8:amd64 (14.2.0-9ubuntu1) ... 421s Selecting previously unselected package liblsan0:amd64. 421s Preparing to unpack .../017-liblsan0_14.2.0-9ubuntu1_amd64.deb ... 421s Unpacking liblsan0:amd64 (14.2.0-9ubuntu1) ... 421s Selecting previously unselected package libtsan2:amd64. 421s Preparing to unpack .../018-libtsan2_14.2.0-9ubuntu1_amd64.deb ... 421s Unpacking libtsan2:amd64 (14.2.0-9ubuntu1) ... 421s Selecting previously unselected package libubsan1:amd64. 421s Preparing to unpack .../019-libubsan1_14.2.0-9ubuntu1_amd64.deb ... 421s Unpacking libubsan1:amd64 (14.2.0-9ubuntu1) ... 421s Selecting previously unselected package libhwasan0:amd64. 421s Preparing to unpack .../020-libhwasan0_14.2.0-9ubuntu1_amd64.deb ... 421s Unpacking libhwasan0:amd64 (14.2.0-9ubuntu1) ... 421s Selecting previously unselected package libquadmath0:amd64. 421s Preparing to unpack .../021-libquadmath0_14.2.0-9ubuntu1_amd64.deb ... 421s Unpacking libquadmath0:amd64 (14.2.0-9ubuntu1) ... 421s Selecting previously unselected package libgcc-14-dev:amd64. 421s Preparing to unpack .../022-libgcc-14-dev_14.2.0-9ubuntu1_amd64.deb ... 421s Unpacking libgcc-14-dev:amd64 (14.2.0-9ubuntu1) ... 422s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 422s Preparing to unpack .../023-gcc-14-x86-64-linux-gnu_14.2.0-9ubuntu1_amd64.deb ... 422s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-9ubuntu1) ... 422s Selecting previously unselected package gcc-14. 422s Preparing to unpack .../024-gcc-14_14.2.0-9ubuntu1_amd64.deb ... 422s Unpacking gcc-14 (14.2.0-9ubuntu1) ... 422s Selecting previously unselected package gcc-x86-64-linux-gnu. 422s Preparing to unpack .../025-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 422s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 422s Selecting previously unselected package gcc. 422s Preparing to unpack .../026-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ... 422s Unpacking gcc (4:14.1.0-2ubuntu1) ... 422s Selecting previously unselected package libstdc++-14-dev:amd64. 422s Preparing to unpack .../027-libstdc++-14-dev_14.2.0-9ubuntu1_amd64.deb ... 422s Unpacking libstdc++-14-dev:amd64 (14.2.0-9ubuntu1) ... 422s Selecting previously unselected package g++-14-x86-64-linux-gnu. 422s Preparing to unpack .../028-g++-14-x86-64-linux-gnu_14.2.0-9ubuntu1_amd64.deb ... 422s Unpacking g++-14-x86-64-linux-gnu (14.2.0-9ubuntu1) ... 422s Selecting previously unselected package g++-14. 422s Preparing to unpack .../029-g++-14_14.2.0-9ubuntu1_amd64.deb ... 422s Unpacking g++-14 (14.2.0-9ubuntu1) ... 422s Selecting previously unselected package g++-x86-64-linux-gnu. 422s Preparing to unpack .../030-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 422s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 422s Selecting previously unselected package g++. 422s Preparing to unpack .../031-g++_4%3a14.1.0-2ubuntu1_amd64.deb ... 422s Unpacking g++ (4:14.1.0-2ubuntu1) ... 422s Selecting previously unselected package build-essential. 422s Preparing to unpack .../032-build-essential_12.10ubuntu1_amd64.deb ... 422s Unpacking build-essential (12.10ubuntu1) ... 422s Selecting previously unselected package libdebhelper-perl. 422s Preparing to unpack .../033-libdebhelper-perl_13.20ubuntu1_all.deb ... 422s Unpacking libdebhelper-perl (13.20ubuntu1) ... 422s Selecting previously unselected package libtool. 422s Preparing to unpack .../034-libtool_2.4.7-8_all.deb ... 422s Unpacking libtool (2.4.7-8) ... 423s Selecting previously unselected package dh-autoreconf. 423s Preparing to unpack .../035-dh-autoreconf_20_all.deb ... 423s Unpacking dh-autoreconf (20) ... 423s Selecting previously unselected package libarchive-zip-perl. 423s Preparing to unpack .../036-libarchive-zip-perl_1.68-1_all.deb ... 423s Unpacking libarchive-zip-perl (1.68-1) ... 423s Selecting previously unselected package libfile-stripnondeterminism-perl. 423s Preparing to unpack .../037-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... 423s Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... 423s Selecting previously unselected package dh-strip-nondeterminism. 423s Preparing to unpack .../038-dh-strip-nondeterminism_1.14.0-1_all.deb ... 423s Unpacking dh-strip-nondeterminism (1.14.0-1) ... 423s Selecting previously unselected package debugedit. 423s Preparing to unpack .../039-debugedit_1%3a5.1-1_amd64.deb ... 423s Unpacking debugedit (1:5.1-1) ... 423s Selecting previously unselected package dwz. 423s Preparing to unpack .../040-dwz_0.15-1build6_amd64.deb ... 423s Unpacking dwz (0.15-1build6) ... 423s Selecting previously unselected package gettext. 423s Preparing to unpack .../041-gettext_0.22.5-2_amd64.deb ... 423s Unpacking gettext (0.22.5-2) ... 423s Selecting previously unselected package intltool-debian. 423s Preparing to unpack .../042-intltool-debian_0.35.0+20060710.6_all.deb ... 423s Unpacking intltool-debian (0.35.0+20060710.6) ... 423s Selecting previously unselected package po-debconf. 423s Preparing to unpack .../043-po-debconf_1.0.21+nmu1_all.deb ... 423s Unpacking po-debconf (1.0.21+nmu1) ... 423s Selecting previously unselected package debhelper. 423s Preparing to unpack .../044-debhelper_13.20ubuntu1_all.deb ... 423s Unpacking debhelper (13.20ubuntu1) ... 423s Selecting previously unselected package dh-python. 423s Preparing to unpack .../045-dh-python_6.20241024_all.deb ... 423s Unpacking dh-python (6.20241024) ... 423s Selecting previously unselected package docutils-common. 423s Preparing to unpack .../046-docutils-common_0.21.2+dfsg-2_all.deb ... 423s Unpacking docutils-common (0.21.2+dfsg-2) ... 423s Selecting previously unselected package libaec0:amd64. 423s Preparing to unpack .../047-libaec0_1.1.3-1_amd64.deb ... 423s Unpacking libaec0:amd64 (1.1.3-1) ... 423s Selecting previously unselected package libblas3:amd64. 423s Preparing to unpack .../048-libblas3_3.12.0-4_amd64.deb ... 423s Unpacking libblas3:amd64 (3.12.0-4) ... 423s Selecting previously unselected package libsnappy1v5:amd64. 423s Preparing to unpack .../049-libsnappy1v5_1.2.1-1_amd64.deb ... 423s Unpacking libsnappy1v5:amd64 (1.2.1-1) ... 423s Selecting previously unselected package libblosc1:amd64. 423s Preparing to unpack .../050-libblosc1_1.21.5+ds-1build1_amd64.deb ... 423s Unpacking libblosc1:amd64 (1.21.5+ds-1build1) ... 423s Selecting previously unselected package libgfortran5:amd64. 423s Preparing to unpack .../051-libgfortran5_14.2.0-9ubuntu1_amd64.deb ... 423s Unpacking libgfortran5:amd64 (14.2.0-9ubuntu1) ... 423s Selecting previously unselected package libsz2:amd64. 423s Preparing to unpack .../052-libsz2_1.1.3-1_amd64.deb ... 423s Unpacking libsz2:amd64 (1.1.3-1) ... 423s Selecting previously unselected package libhdf5-103-1t64:amd64. 423s Preparing to unpack .../053-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ... 423s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 423s Selecting previously unselected package libhdf5-hl-100t64:amd64. 423s Preparing to unpack .../054-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_amd64.deb ... 423s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 423s Selecting previously unselected package libjs-jquery. 423s Preparing to unpack .../055-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 423s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 423s Selecting previously unselected package libjs-underscore. 423s Preparing to unpack .../056-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 423s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 423s Selecting previously unselected package libjs-sphinxdoc. 423s Preparing to unpack .../057-libjs-sphinxdoc_7.4.7-4_all.deb ... 423s Unpacking libjs-sphinxdoc (7.4.7-4) ... 423s Selecting previously unselected package libjson-perl. 423s Preparing to unpack .../058-libjson-perl_4.10000-1_all.deb ... 423s Unpacking libjson-perl (4.10000-1) ... 423s Selecting previously unselected package liblapack3:amd64. 423s Preparing to unpack .../059-liblapack3_3.12.0-4_amd64.deb ... 423s Unpacking liblapack3:amd64 (3.12.0-4) ... 423s Selecting previously unselected package liblzf1:amd64. 423s Preparing to unpack .../060-liblzf1_3.6-4_amd64.deb ... 423s Unpacking liblzf1:amd64 (3.6-4) ... 423s Selecting previously unselected package libpython3.13-stdlib:amd64. 423s Preparing to unpack .../061-libpython3.13-stdlib_3.13.0-2_amd64.deb ... 423s Unpacking libpython3.13-stdlib:amd64 (3.13.0-2) ... 423s Selecting previously unselected package pybuild-plugin-autopkgtest. 423s Preparing to unpack .../062-pybuild-plugin-autopkgtest_6.20241024_all.deb ... 423s Unpacking pybuild-plugin-autopkgtest (6.20241024) ... 424s Selecting previously unselected package python3-packaging. 424s Preparing to unpack .../063-python3-packaging_24.2-1_all.deb ... 424s Unpacking python3-packaging (24.2-1) ... 424s Selecting previously unselected package python3-pyproject-hooks. 424s Preparing to unpack .../064-python3-pyproject-hooks_1.2.0-1_all.deb ... 424s Unpacking python3-pyproject-hooks (1.2.0-1) ... 424s Selecting previously unselected package python3-toml. 424s Preparing to unpack .../065-python3-toml_0.10.2-1_all.deb ... 424s Unpacking python3-toml (0.10.2-1) ... 424s Selecting previously unselected package python3-wheel. 424s Preparing to unpack .../066-python3-wheel_0.45.1-1_all.deb ... 424s Unpacking python3-wheel (0.45.1-1) ... 424s Selecting previously unselected package python3-build. 424s Preparing to unpack .../067-python3-build_1.2.2-1_all.deb ... 424s Unpacking python3-build (1.2.2-1) ... 424s Selecting previously unselected package python3-installer. 424s Preparing to unpack .../068-python3-installer_0.7.0+dfsg1-3_all.deb ... 424s Unpacking python3-installer (0.7.0+dfsg1-3) ... 424s Selecting previously unselected package pybuild-plugin-pyproject. 424s Preparing to unpack .../069-pybuild-plugin-pyproject_6.20241024_all.deb ... 424s Unpacking pybuild-plugin-pyproject (6.20241024) ... 424s Selecting previously unselected package python3.13. 424s Preparing to unpack .../070-python3.13_3.13.0-2_amd64.deb ... 424s Unpacking python3.13 (3.13.0-2) ... 424s Selecting previously unselected package python3-all. 424s Preparing to unpack .../071-python3-all_3.12.7-1_amd64.deb ... 424s Unpacking python3-all (3.12.7-1) ... 424s Selecting previously unselected package python3-asciitree. 424s Preparing to unpack .../072-python3-asciitree_0.3.3-4_all.deb ... 424s Unpacking python3-asciitree (0.3.3-4) ... 424s Selecting previously unselected package python3-soupsieve. 424s Preparing to unpack .../073-python3-soupsieve_2.6-1_all.deb ... 424s Unpacking python3-soupsieve (2.6-1) ... 424s Selecting previously unselected package python3-bs4. 424s Preparing to unpack .../074-python3-bs4_4.12.3-3_all.deb ... 424s Unpacking python3-bs4 (4.12.3-3) ... 424s Selecting previously unselected package python3-defusedxml. 424s Preparing to unpack .../075-python3-defusedxml_0.7.1-2_all.deb ... 424s Unpacking python3-defusedxml (0.7.1-2) ... 424s Selecting previously unselected package python3-roman. 424s Preparing to unpack .../076-python3-roman_4.2-1_all.deb ... 424s Unpacking python3-roman (4.2-1) ... 424s Selecting previously unselected package python3-docutils. 424s Preparing to unpack .../077-python3-docutils_0.21.2+dfsg-2_all.deb ... 424s Unpacking python3-docutils (0.21.2+dfsg-2) ... 424s Selecting previously unselected package python3-monotonic. 424s Preparing to unpack .../078-python3-monotonic_1.6-2_all.deb ... 424s Unpacking python3-monotonic (1.6-2) ... 424s Selecting previously unselected package python3-fasteners. 424s Preparing to unpack .../079-python3-fasteners_0.18-2_all.deb ... 424s Unpacking python3-fasteners (0.18-2) ... 424s Selecting previously unselected package python3-fsspec. 424s Preparing to unpack .../080-python3-fsspec_2024.9.0-1_all.deb ... 424s Unpacking python3-fsspec (2024.9.0-1) ... 424s Selecting previously unselected package python3-numpy. 424s Preparing to unpack .../081-python3-numpy_1%3a1.26.4+ds-11ubuntu1_amd64.deb ... 424s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 424s Selecting previously unselected package python3-h5py-serial. 424s Preparing to unpack .../082-python3-h5py-serial_3.11.0-5ubuntu1_amd64.deb ... 424s Unpacking python3-h5py-serial (3.11.0-5ubuntu1) ... 424s Selecting previously unselected package python3-h5py. 424s Preparing to unpack .../083-python3-h5py_3.11.0-5ubuntu1_all.deb ... 424s Unpacking python3-h5py (3.11.0-5ubuntu1) ... 424s Selecting previously unselected package python3-imagesize. 424s Preparing to unpack .../084-python3-imagesize_1.4.1-1_all.deb ... 424s Unpacking python3-imagesize (1.4.1-1) ... 424s Selecting previously unselected package python3-iniconfig. 424s Preparing to unpack .../085-python3-iniconfig_1.1.1-2_all.deb ... 424s Unpacking python3-iniconfig (1.1.1-2) ... 424s Selecting previously unselected package python3-msgpack. 424s Preparing to unpack .../086-python3-msgpack_1.0.3-3build3_amd64.deb ... 424s Unpacking python3-msgpack (1.0.3-3build3) ... 424s Selecting previously unselected package sphinx-common. 425s Preparing to unpack .../087-sphinx-common_7.4.7-4_all.deb ... 425s Unpacking sphinx-common (7.4.7-4) ... 425s Selecting previously unselected package python3-alabaster. 425s Preparing to unpack .../088-python3-alabaster_0.7.16-0.1_all.deb ... 425s Unpacking python3-alabaster (0.7.16-0.1) ... 425s Selecting previously unselected package python3-snowballstemmer. 425s Preparing to unpack .../089-python3-snowballstemmer_2.2.0-4build1_all.deb ... 425s Unpacking python3-snowballstemmer (2.2.0-4build1) ... 425s Selecting previously unselected package python3-sphinx. 425s Preparing to unpack .../090-python3-sphinx_7.4.7-4_all.deb ... 425s Unpacking python3-sphinx (7.4.7-4) ... 425s Selecting previously unselected package python3-pydata-sphinx-theme. 425s Preparing to unpack .../091-python3-pydata-sphinx-theme_0.15.4+dfsg-2_all.deb ... 425s Unpacking python3-pydata-sphinx-theme (0.15.4+dfsg-2) ... 425s Selecting previously unselected package python3-numcodecs. 425s Preparing to unpack .../092-python3-numcodecs_0.14.1+ds-1_amd64.deb ... 425s Unpacking python3-numcodecs (0.14.1+ds-1) ... 425s Selecting previously unselected package python3-tabulate. 425s Preparing to unpack .../093-python3-tabulate_0.9.0-1_all.deb ... 425s Unpacking python3-tabulate (0.9.0-1) ... 425s Selecting previously unselected package python3-numpydoc. 425s Preparing to unpack .../094-python3-numpydoc_1.8.0-1_all.deb ... 425s Unpacking python3-numpydoc (1.8.0-1) ... 425s Selecting previously unselected package python3-pluggy. 425s Preparing to unpack .../095-python3-pluggy_1.5.0-1_all.deb ... 425s Unpacking python3-pluggy (1.5.0-1) ... 425s Selecting previously unselected package python3-pytest. 425s Preparing to unpack .../096-python3-pytest_8.3.3-1_all.deb ... 425s Unpacking python3-pytest (8.3.3-1) ... 425s Selecting previously unselected package python3-pytest-doctestplus. 425s Preparing to unpack .../097-python3-pytest-doctestplus_1.3.0-1_all.deb ... 425s Unpacking python3-pytest-doctestplus (1.3.0-1) ... 425s Selecting previously unselected package python3-pytest-timeout. 425s Preparing to unpack .../098-python3-pytest-timeout_2.3.1-1_all.deb ... 425s Unpacking python3-pytest-timeout (2.3.1-1) ... 425s Selecting previously unselected package python3-setuptools-scm. 425s Preparing to unpack .../099-python3-setuptools-scm_8.1.0-1_all.deb ... 425s Unpacking python3-setuptools-scm (8.1.0-1) ... 425s Selecting previously unselected package python3-sphinx-automodapi. 425s Preparing to unpack .../100-python3-sphinx-automodapi_0.18.0-1_all.deb ... 425s Unpacking python3-sphinx-automodapi (0.18.0-1) ... 425s Selecting previously unselected package python3-sphinx-copybutton. 425s Preparing to unpack .../101-python3-sphinx-copybutton_0.5.2-2_all.deb ... 425s Unpacking python3-sphinx-copybutton (0.5.2-2) ... 425s Selecting previously unselected package python3-sphinx-design. 425s Preparing to unpack .../102-python3-sphinx-design_0.6.1-1_all.deb ... 425s Unpacking python3-sphinx-design (0.6.1-1) ... 425s Selecting previously unselected package python3-sphinx-issues. 425s Preparing to unpack .../103-python3-sphinx-issues_5.0.0-1_all.deb ... 425s Unpacking python3-sphinx-issues (5.0.0-1) ... 425s Selecting previously unselected package python3-zarr. 425s Preparing to unpack .../104-python3-zarr_2.18.3+ds-2_all.deb ... 425s Unpacking python3-zarr (2.18.3+ds-2) ... 425s Setting up dh-python (6.20241024) ... 426s Setting up python3-iniconfig (1.1.1-2) ... 426s Setting up python3-defusedxml (0.7.1-2) ... 426s Setting up libarchive-zip-perl (1.68-1) ... 426s Setting up python3-alabaster (0.7.16-0.1) ... 426s Setting up libdebhelper-perl (13.20ubuntu1) ... 426s Setting up python3-fsspec (2024.9.0-1) ... 427s Setting up python3-tabulate (0.9.0-1) ... 427s Setting up m4 (1.4.19-4build1) ... 427s Setting up libgomp1:amd64 (14.2.0-9ubuntu1) ... 427s Setting up python3-wheel (0.45.1-1) ... 427s Setting up libaec0:amd64 (1.1.3-1) ... 427s Setting up libsnappy1v5:amd64 (1.2.1-1) ... 427s Setting up python3-monotonic (1.6-2) ... 427s Setting up libpython3.13-minimal:amd64 (3.13.0-2) ... 427s Setting up python3-roman (4.2-1) ... 428s Setting up autotools-dev (20220109.1) ... 428s Setting up libblas3:amd64 (3.12.0-4) ... 428s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 428s Setting up python3-packaging (24.2-1) ... 428s Setting up python3-pyproject-hooks (1.2.0-1) ... 428s Setting up python3-snowballstemmer (2.2.0-4build1) ... 429s Setting up liblzf1:amd64 (3.6-4) ... 429s Setting up libquadmath0:amd64 (14.2.0-9ubuntu1) ... 429s Setting up libmpc3:amd64 (1.3.1-1build2) ... 429s Setting up autopoint (0.22.5-2) ... 429s Setting up python3-fasteners (0.18-2) ... 429s Setting up python3-asciitree (0.3.3-4) ... 429s Setting up python3-toml (0.10.2-1) ... 429s Setting up python3-installer (0.7.0+dfsg1-3) ... 429s Setting up libgfortran5:amd64 (14.2.0-9ubuntu1) ... 429s Setting up autoconf (2.72-3) ... 429s Setting up python3-pluggy (1.5.0-1) ... 429s Setting up libubsan1:amd64 (14.2.0-9ubuntu1) ... 429s Setting up dwz (0.15-1build6) ... 429s Setting up libhwasan0:amd64 (14.2.0-9ubuntu1) ... 429s Setting up libasan8:amd64 (14.2.0-9ubuntu1) ... 429s Setting up docutils-common (0.21.2+dfsg-2) ... 430s Setting up libjson-perl (4.10000-1) ... 430s Setting up libblosc1:amd64 (1.21.5+ds-1build1) ... 430s Setting up debugedit (1:5.1-1) ... 430s Setting up python3.13-minimal (3.13.0-2) ... 431s Setting up python3-msgpack (1.0.3-3build3) ... 431s Setting up libtsan2:amd64 (14.2.0-9ubuntu1) ... 431s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 431s Setting up libisl23:amd64 (0.27-1) ... 431s Setting up python3-build (1.2.2-1) ... 431s Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ... 431s Setting up python3-soupsieve (2.6-1) ... 431s Setting up libcc1-0:amd64 (14.2.0-9ubuntu1) ... 431s Setting up liblsan0:amd64 (14.2.0-9ubuntu1) ... 431s Setting up libsz2:amd64 (1.1.3-1) ... 431s Setting up libitm1:amd64 (14.2.0-9ubuntu1) ... 431s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 431s Setting up python3-imagesize (1.4.1-1) ... 431s Setting up automake (1:1.16.5-1.3ubuntu1) ... 431s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode 431s Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... 431s Setting up liblapack3:amd64 (3.12.0-4) ... 431s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 431s Setting up gettext (0.22.5-2) ... 431s Setting up python3.13 (3.13.0-2) ... 433s Setting up pybuild-plugin-pyproject (6.20241024) ... 433s Setting up python3-pytest (8.3.3-1) ... 433s Setting up python3-all (3.12.7-1) ... 433s Setting up python3-setuptools-scm (8.1.0-1) ... 433s Setting up python3-bs4 (4.12.3-3) ... 434s Setting up intltool-debian (0.35.0+20060710.6) ... 434s Setting up cpp-14-x86-64-linux-gnu (14.2.0-9ubuntu1) ... 434s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ... 437s Setting up libjs-sphinxdoc (7.4.7-4) ... 437s Setting up cpp-14 (14.2.0-9ubuntu1) ... 437s Setting up python3-pytest-doctestplus (1.3.0-1) ... 437s Setting up dh-strip-nondeterminism (1.14.0-1) ... 437s Setting up libgcc-14-dev:amd64 (14.2.0-9ubuntu1) ... 437s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 437s Setting up libstdc++-14-dev:amd64 (14.2.0-9ubuntu1) ... 437s Setting up cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 437s Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 437s Setting up python3-pytest-timeout (2.3.1-1) ... 437s Setting up po-debconf (1.0.21+nmu1) ... 437s Setting up python3-h5py-serial (3.11.0-5ubuntu1) ... 438s Setting up sphinx-common (7.4.7-4) ... 438s Setting up python3-h5py (3.11.0-5ubuntu1) ... 438s Setting up cpp (4:14.1.0-2ubuntu1) ... 438s Setting up gcc-14-x86-64-linux-gnu (14.2.0-9ubuntu1) ... 438s Setting up gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 438s Setting up gcc-14 (14.2.0-9ubuntu1) ... 438s Setting up g++-14-x86-64-linux-gnu (14.2.0-9ubuntu1) ... 438s Setting up g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 438s Setting up g++-14 (14.2.0-9ubuntu1) ... 438s Setting up libtool (2.4.7-8) ... 438s Setting up gcc (4:14.1.0-2ubuntu1) ... 438s Setting up dh-autoreconf (20) ... 438s Setting up g++ (4:14.1.0-2ubuntu1) ... 438s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 438s Setting up build-essential (12.10ubuntu1) ... 438s Setting up debhelper (13.20ubuntu1) ... 438s Setting up pybuild-plugin-autopkgtest (6.20241024) ... 438s Processing triggers for sgml-base (1.31) ... 438s Setting up python3-docutils (0.21.2+dfsg-2) ... 439s Processing triggers for install-info (7.1.1-1) ... 439s Processing triggers for libc-bin (2.40-1ubuntu3) ... 439s Processing triggers for systemd (256.5-2ubuntu4) ... 439s Processing triggers for man-db (2.13.0-1) ... 440s Setting up python3-sphinx (7.4.7-4) ... 441s Setting up python3-sphinx-copybutton (0.5.2-2) ... 441s Setting up python3-sphinx-issues (5.0.0-1) ... 441s Setting up python3-sphinx-design (0.6.1-1) ... 442s Setting up python3-numpydoc (1.8.0-1) ... 442s Setting up python3-pydata-sphinx-theme (0.15.4+dfsg-2) ... 442s Setting up python3-sphinx-automodapi (0.18.0-1) ... 442s Setting up python3-numcodecs (0.14.1+ds-1) ... 443s Setting up python3-zarr (2.18.3+ds-2) ... 444s autopkgtest [09:42:15]: test pybuild-autopkgtest: pybuild-autopkgtest 444s autopkgtest [09:42:15]: test pybuild-autopkgtest: [----------------------- 445s pybuild-autopkgtest 447s I: pybuild base:311: cd /tmp/autopkgtest.h2Dh2j/autopkgtest_tmp/build; python3.13 -m pytest -k "not test_hierarchy and not test_complex and not test_array_with_delta_filter and not test_utf8_encoding and not [static_flat] and not [static_nested] and not [static_flat_legacy] and not [static_nested_legacy] and not test_meta_prefix_6853 and not test_encode_decode_array_dtype_shape_v3" --pyargs zarr 449s ============================= test session starts ============================== 449s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 449s rootdir: /tmp/autopkgtest.h2Dh2j/autopkgtest_tmp/build 449s configfile: pyproject.toml 449s plugins: typeguard-4.4.1, doctestplus-1.3.0, timeout-2.3.1 449s collected 5174 items / 769 deselected / 4405 selected 449s 449s tests/test_attrs.py .................. [ 0%] 449s tests/test_convenience.py .....ss...................ssssssss.s.EEE.EEE.E [ 1%] 450s EE.EEE.EEE.EEE.EEE.EEE.EEE.EEE.EEE.EEE.EEE.EEE.EEEssssssssssssssssssssss [ 3%] 450s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 4%] 450s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 6%] 450s ssssssssssssss [ 6%] 451s tests/test_core.py ..................................................... [ 7%] 452s ........................................................................ [ 9%] 454s ................................................................ssssssss [ 11%] 454s sssssssssssssssssssssssssssssssssssssss................................. [ 12%] 456s ........................................................................ [ 14%] 462s ........................................................................ [ 16%] 464s .............sssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 17%] 464s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 19%] 472s ssssssssss.............................................................. [ 20%] 474s ........................................................................ [ 22%] 475s ........................................................................ [ 24%] 476s ........................................................................ [ 25%] 477s ........................................................................ [ 27%] 479s ........................................................................ [ 29%] 480s ........................................................................ [ 30%] 484s ..................................................................s..... [ 32%] 487s ........................................................................ [ 34%] 489s ...................s..........ssssssssssssssssssssssssssssssssssssssssss [ 35%] 489s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 37%] 489s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 38%] 489s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 40%] 489s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 42%] 489s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 43%] 489s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 45%] 489s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 47%] 489s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 48%] 489s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 50%] 489s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 52%] 489s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 53%] 489s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 55%] 489s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 56%] 489s ssssssssssssssss...... [ 57%] 490s tests/test_creation.py ................................................. [ 58%] 490s ..................................ss..... [ 59%] 490s tests/test_dim_separator.py ..........................x....x [ 60%] 490s tests/test_filters.py ...... [ 60%] 497s tests/test_indexing.py ................................................. [ 61%] 497s ......xx...... [ 61%] 497s tests/test_info.py .. [ 61%] 497s tests/test_meta.py ......................... [ 62%] 497s tests/test_meta_array.py .sss.sss.sss.sss.sss.sss.sss.sss..ssssss..sssss [ 63%] 497s s..ssssss..ssssss [ 63%] 497s tests/test_n5.py ..... [ 63%] 497s tests/test_storage.py ...................s........................s..... [ 65%] 497s ...................s.................................................... [ 66%] 498s .......................ss..............s................................ [ 68%] 498s ........................................................................ [ 69%] 498s ....................ss.................................................. [ 71%] 498s .............s.......................................................... [ 73%] 498s ........................................................................ [ 74%] 499s .....ssssssssssssssssssssssssssssssssssssssssssssssss................... [ 76%] 499s ...............................sssssssssssssssssssssssssssssssssssssssss [ 78%] 501s sssssss.............s.................ssssssssssssssssssssssssss....... [ 79%] 501s tests/test_storage_v3.py sssssssssssssssssssssssssssssssssssssssssssssss [ 80%] 501s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 82%] 501s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 84%] 501s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 85%] 501s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 87%] 501s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 88%] 501s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 90%] 501s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 92%] 501s sssssssssssssssssssssssssssssssssssssssssss [ 93%] 501s tests/test_sync.py ..................................................... [ 94%] 502s ........................................................................ [ 96%] 504s ........................................................................ [ 97%] 505s ........................................................................ [ 99%] 505s ........... [ 99%] 505s tests/test_util.py .................. [100%] 505s 505s ==================================== ERRORS ==================================== 505s ____________ ERROR at setup of TestCopy.test_copy_array[zarr-hdf5] _____________ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_zarr_hdf5_0') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def dest(self, request, tmpdir): 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 505s ____________ ERROR at setup of TestCopy.test_copy_array[hdf5-zarr] _____________ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_hdf5_zarr_0') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s ____________ ERROR at setup of TestCopy.test_copy_array[hdf5-hdf5] _____________ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_hdf5_hdf5_0') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s ___________ ERROR at setup of TestCopy.test_copy_bad_dest[zarr-hdf5] ___________ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_bad_dest_zarr_hdf5_0') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def dest(self, request, tmpdir): 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 505s ___________ ERROR at setup of TestCopy.test_copy_bad_dest[hdf5-zarr] ___________ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_bad_dest_hdf5_zarr_0') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s ___________ ERROR at setup of TestCopy.test_copy_bad_dest[hdf5-hdf5] ___________ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_bad_dest_hdf5_hdf5_0') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s __________ ERROR at setup of TestCopy.test_copy_array_name[zarr-hdf5] __________ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_name_zarr_hdf50') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def dest(self, request, tmpdir): 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 505s __________ ERROR at setup of TestCopy.test_copy_array_name[hdf5-zarr] __________ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_name_hdf5_zarr0') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s __________ ERROR at setup of TestCopy.test_copy_array_name[hdf5-hdf5] __________ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_name_hdf5_hdf50') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s _____ ERROR at setup of TestCopy.test_copy_array_create_options[zarr-hdf5] _____ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_create_options1') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def dest(self, request, tmpdir): 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 505s _____ ERROR at setup of TestCopy.test_copy_array_create_options[hdf5-zarr] _____ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_create_options2') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s _____ ERROR at setup of TestCopy.test_copy_array_create_options[hdf5-hdf5] _____ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_create_options3') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s ______ ERROR at setup of TestCopy.test_copy_array_exists_array[zarr-hdf5] ______ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_array_z1') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def dest(self, request, tmpdir): 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 505s ______ ERROR at setup of TestCopy.test_copy_array_exists_array[hdf5-zarr] ______ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_array_h0') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s ______ ERROR at setup of TestCopy.test_copy_array_exists_array[hdf5-hdf5] ______ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_array_h1') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s ______ ERROR at setup of TestCopy.test_copy_array_exists_group[zarr-hdf5] ______ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_group_z1') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def dest(self, request, tmpdir): 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 505s ______ ERROR at setup of TestCopy.test_copy_array_exists_group[hdf5-zarr] ______ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_group_h0') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s ______ ERROR at setup of TestCopy.test_copy_array_exists_group[hdf5-hdf5] ______ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_group_h1') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s ____ ERROR at setup of TestCopy.test_copy_array_skip_initialized[zarr-hdf5] ____ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_skip_initializ1') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def dest(self, request, tmpdir): 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 505s ____ ERROR at setup of TestCopy.test_copy_array_skip_initialized[hdf5-zarr] ____ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_skip_initializ2') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s ____ ERROR at setup of TestCopy.test_copy_array_skip_initialized[hdf5-hdf5] ____ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_skip_initializ3') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s ____________ ERROR at setup of TestCopy.test_copy_group[zarr-hdf5] _____________ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_zarr_hdf5_0') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def dest(self, request, tmpdir): 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 505s ____________ ERROR at setup of TestCopy.test_copy_group[hdf5-zarr] _____________ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_hdf5_zarr_0') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s ____________ ERROR at setup of TestCopy.test_copy_group[hdf5-hdf5] _____________ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_hdf5_hdf5_0') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s ________ ERROR at setup of TestCopy.test_copy_group_no_name[zarr-hdf5] _________ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_no_name_zarr_h0') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def dest(self, request, tmpdir): 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 505s ________ ERROR at setup of TestCopy.test_copy_group_no_name[hdf5-zarr] _________ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_no_name_hdf5_z0') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s ________ ERROR at setup of TestCopy.test_copy_group_no_name[hdf5-hdf5] _________ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_no_name_hdf5_h0') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s ________ ERROR at setup of TestCopy.test_copy_group_options[zarr-hdf5] _________ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_options_zarr_h0') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def dest(self, request, tmpdir): 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 505s ________ ERROR at setup of TestCopy.test_copy_group_options[hdf5-zarr] _________ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_options_hdf5_z0') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s ________ ERROR at setup of TestCopy.test_copy_group_options[hdf5-hdf5] _________ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_options_hdf5_h0') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s ________ ERROR at setup of TestCopy.test_copy_group_shallow[zarr-hdf5] _________ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_shallow_zarr_h0') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def dest(self, request, tmpdir): 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 505s ________ ERROR at setup of TestCopy.test_copy_group_shallow[hdf5-zarr] _________ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_shallow_hdf5_z0') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s ________ ERROR at setup of TestCopy.test_copy_group_shallow[hdf5-hdf5] _________ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_shallow_hdf5_h0') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s ______ ERROR at setup of TestCopy.test_copy_group_exists_group[zarr-hdf5] ______ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_group_z1') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def dest(self, request, tmpdir): 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 505s ______ ERROR at setup of TestCopy.test_copy_group_exists_group[hdf5-zarr] ______ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_group_h0') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s ______ ERROR at setup of TestCopy.test_copy_group_exists_group[hdf5-hdf5] ______ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_group_h1') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s ______ ERROR at setup of TestCopy.test_copy_group_exists_array[zarr-hdf5] ______ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_array_z1') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def dest(self, request, tmpdir): 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 505s ______ ERROR at setup of TestCopy.test_copy_group_exists_array[hdf5-zarr] ______ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_array_h0') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s ______ ERROR at setup of TestCopy.test_copy_group_exists_array[hdf5-hdf5] ______ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_array_h1') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s ________ ERROR at setup of TestCopy.test_copy_group_dry_run[zarr-hdf5] _________ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_dry_run_zarr_h0') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def dest(self, request, tmpdir): 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 505s ________ ERROR at setup of TestCopy.test_copy_group_dry_run[hdf5-zarr] _________ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_dry_run_hdf5_z0') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s ________ ERROR at setup of TestCopy.test_copy_group_dry_run[hdf5-hdf5] _________ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_dry_run_hdf5_h0') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s ______________ ERROR at setup of TestCopy.test_logging[zarr-hdf5] ______________ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_logging_zarr_hdf5_0') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def dest(self, request, tmpdir): 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 505s ______________ ERROR at setup of TestCopy.test_logging[hdf5-zarr] ______________ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_logging_hdf5_zarr_0') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s ______________ ERROR at setup of TestCopy.test_logging[hdf5-hdf5] ______________ 505s 505s self = 505s request = > 505s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_logging_hdf5_hdf5_0') 505s 505s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 505s def source(self, request, tmpdir): 505s def prep_source(source): 505s foo = source.create_group("foo") 505s foo.attrs["experiment"] = "weird science" 505s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 505s baz.attrs["units"] = "metres" 505s if request.param: 505s extra_kws = dict( 505s compression="gzip", 505s compression_opts=3, 505s fillvalue=84, 505s shuffle=True, 505s fletcher32=True, 505s ) 505s else: 505s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 505s source.create_dataset( 505s "spam", 505s data=np.arange(100, 200).reshape(20, 5), 505s chunks=(10, 2), 505s dtype="i2", 505s **extra_kws, 505s ) 505s return source 505s 505s if request.param: 505s > h5py = pytest.importorskip("h5py") 505s E pytest.PytestDeprecationWarning: 505s E Module 'h5py' was found, but when imported by pytest it raised: 505s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 505s E In pytest 9.1 this warning will become an error by default. 505s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 505s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 505s 505s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 505s =============================== warnings summary =============================== 505s tests/test_core.py::TestArrayWithDBMStore::test_array_1d 505s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 505s 505s Traceback (most recent call last): 505s File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 355, in 505s chunk_coords = tuple(p.dim_chunk_ix for p in dim_projections) 505s 505s ResourceWarning: unclosed database in 505s 505s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 505s 505s tests/test_core.py::TestArrayWithDBMStore::test_object_arrays_danger 505s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 505s 505s Traceback (most recent call last): 505s File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 357, in 505s out_selection = tuple( 505s 505s ResourceWarning: unclosed database in 505s 505s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 505s 505s tests/test_core.py::TestArrayWithSQLiteStore::test_resize_2d 505s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 505s 505s Traceback (most recent call last): 505s File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 356, in 505s chunk_selection = tuple(p.dim_chunk_sel for p in dim_projections) 505s 505s ResourceWarning: unclosed database in 505s 505s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 505s 505s tests/test_core.py::TestArrayWithSQLiteStore::test_object_arrays_vlen_text 505s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 505s 505s Traceback (most recent call last): 505s File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 219, in __iter__ 505s dim_chunk_sel = slice(dim_chunk_sel_start, dim_chunk_sel_stop, self.step) 505s ResourceWarning: unclosed database in 505s 505s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 505s 505s tests/test_core.py::TestArrayWithNoCompressor::test_array_2d 505s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 505s 505s Traceback (most recent call last): 505s File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 355, in 505s chunk_coords = tuple(p.dim_chunk_ix for p in dim_projections) 505s 505s ResourceWarning: unclosed database in 505s 505s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 505s 505s tests/test_core.py::TestArrayWithNoCompressor::test_iter 505s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 505s 505s Traceback (most recent call last): 505s File "/usr/lib/python3/dist-packages/zarr/util.py", line 249, in is_total_slice 505s for it, sh in zip(item, shape) 505s ~~~^^^^^^^^^^^^^ 505s ResourceWarning: unclosed database in 505s 505s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 505s 505s tests/test_storage.py::TestZipStore::test_store_and_retrieve_ndarray 505s /usr/lib/python3.13/zipfile/__init__.py:1638: UserWarning: Duplicate name: 'foo' 505s return self._open_to_write(zinfo, force_zip64=force_zip64) 505s 505s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_setitem 505s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_setitem 505s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_append 505s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_append 505s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_create_group 505s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_create_group 505s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_require_group 505s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_require_group 505s /usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: This process (pid=3486) is multi-threaded, use of fork() may lead to deadlocks in the child. 505s self.pid = os.fork() 505s 505s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 505s ============================= slowest 10 durations ============================= 505s 4.89s call tests/test_indexing.py::test_set_orthogonal_selection_3d 505s 2.09s call tests/test_storage.py::test_format_compatibility 505s 1.15s call tests/test_core.py::TestArrayWithFSStorePartialRead::test_non_cont 505s 0.95s call tests/test_core.py::TestArrayWithSQLiteStore::test_iter 505s 0.94s call tests/test_core.py::TestArrayWithSQLiteStore::test_islice 505s 0.78s call tests/test_indexing.py::test_set_orthogonal_selection_2d 505s 0.71s call tests/test_core.py::TestArrayWithSQLiteStore::test_resize_2d 505s 0.70s call tests/test_core.py::TestArrayWithDBMStore::test_iter 505s 0.70s call tests/test_core.py::TestArrayWithDBMStore::test_islice 505s 0.69s call tests/test_core.py::TestArrayWithNoCompressor::test_object_arrays_vlen_array 505s =========================== short test summary info ============================ 505s ERROR tests/test_convenience.py::TestCopy::test_copy_array[zarr-hdf5] - pytes... 505s ERROR tests/test_convenience.py::TestCopy::test_copy_array[hdf5-zarr] - pytes... 505s ERROR tests/test_convenience.py::TestCopy::test_copy_array[hdf5-hdf5] - pytes... 505s ERROR tests/test_convenience.py::TestCopy::test_copy_bad_dest[zarr-hdf5] - py... 505s ERROR tests/test_convenience.py::TestCopy::test_copy_bad_dest[hdf5-zarr] - py... 505s ERROR tests/test_convenience.py::TestCopy::test_copy_bad_dest[hdf5-hdf5] - py... 505s ERROR tests/test_convenience.py::TestCopy::test_copy_array_name[zarr-hdf5] - ... 505s ERROR tests/test_convenience.py::TestCopy::test_copy_array_name[hdf5-zarr] - ... 505s ERROR tests/test_convenience.py::TestCopy::test_copy_array_name[hdf5-hdf5] - ... 505s ERROR tests/test_convenience.py::TestCopy::test_copy_array_create_options[zarr-hdf5] 505s ERROR tests/test_convenience.py::TestCopy::test_copy_array_create_options[hdf5-zarr] 505s ERROR tests/test_convenience.py::TestCopy::test_copy_array_create_options[hdf5-hdf5] 505s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_array[zarr-hdf5] 505s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_array[hdf5-zarr] 505s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_array[hdf5-hdf5] 505s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_group[zarr-hdf5] 505s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_group[hdf5-zarr] 505s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_group[hdf5-hdf5] 505s ERROR tests/test_convenience.py::TestCopy::test_copy_array_skip_initialized[zarr-hdf5] 505s ERROR tests/test_convenience.py::TestCopy::test_copy_array_skip_initialized[hdf5-zarr] 505s ERROR tests/test_convenience.py::TestCopy::test_copy_array_skip_initialized[hdf5-hdf5] 505s ERROR tests/test_convenience.py::TestCopy::test_copy_group[zarr-hdf5] - pytes... 505s ERROR tests/test_convenience.py::TestCopy::test_copy_group[hdf5-zarr] - pytes... 505s ERROR tests/test_convenience.py::TestCopy::test_copy_group[hdf5-hdf5] - pytes... 505s ERROR tests/test_convenience.py::TestCopy::test_copy_group_no_name[zarr-hdf5] 505s ERROR tests/test_convenience.py::TestCopy::test_copy_group_no_name[hdf5-zarr] 505s ERROR tests/test_convenience.py::TestCopy::test_copy_group_no_name[hdf5-hdf5] 505s ERROR tests/test_convenience.py::TestCopy::test_copy_group_options[zarr-hdf5] 505s ERROR tests/test_convenience.py::TestCopy::test_copy_group_options[hdf5-zarr] 505s ERROR tests/test_convenience.py::TestCopy::test_copy_group_options[hdf5-hdf5] 505s ERROR tests/test_convenience.py::TestCopy::test_copy_group_shallow[zarr-hdf5] 505s ERROR tests/test_convenience.py::TestCopy::test_copy_group_shallow[hdf5-zarr] 505s ERROR tests/test_convenience.py::TestCopy::test_copy_group_shallow[hdf5-hdf5] 505s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_group[zarr-hdf5] 505s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_group[hdf5-zarr] 505s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_group[hdf5-hdf5] 505s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_array[zarr-hdf5] 505s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_array[hdf5-zarr] 505s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_array[hdf5-hdf5] 505s ERROR tests/test_convenience.py::TestCopy::test_copy_group_dry_run[zarr-hdf5] 505s ERROR tests/test_convenience.py::TestCopy::test_copy_group_dry_run[hdf5-zarr] 505s ERROR tests/test_convenience.py::TestCopy::test_copy_group_dry_run[hdf5-hdf5] 505s ERROR tests/test_convenience.py::TestCopy::test_logging[zarr-hdf5] - pytest.P... 505s ERROR tests/test_convenience.py::TestCopy::test_logging[hdf5-zarr] - pytest.P... 505s ERROR tests/test_convenience.py::TestCopy::test_logging[hdf5-hdf5] - pytest.P... 505s = 2205 passed, 2151 skipped, 769 deselected, 4 xfailed, 15 warnings, 45 errors in 58.08s = 506s E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd /tmp/autopkgtest.h2Dh2j/autopkgtest_tmp/build; python3.13 -m pytest -k "not test_hierarchy and not test_complex and not test_array_with_delta_filter and not test_utf8_encoding and not [static_flat] and not [static_nested] and not [static_flat_legacy] and not [static_nested_legacy] and not test_meta_prefix_6853 and not test_encode_decode_array_dtype_shape_v3" --pyargs zarr 506s I: pybuild base:311: cd /tmp/autopkgtest.h2Dh2j/autopkgtest_tmp/build; python3.12 -m pytest -k "not test_hierarchy and not test_complex and not test_array_with_delta_filter and not test_utf8_encoding and not [static_flat] and not [static_nested] and not [static_flat_legacy] and not [static_nested_legacy] and not test_meta_prefix_6853 and not test_encode_decode_array_dtype_shape_v3" --pyargs zarr 509s ============================= test session starts ============================== 509s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 509s rootdir: /tmp/autopkgtest.h2Dh2j/autopkgtest_tmp/build 509s configfile: pyproject.toml 509s plugins: typeguard-4.4.1, doctestplus-1.3.0, timeout-2.3.1 509s collected 5174 items / 769 deselected / 4405 selected 509s 509s tests/test_attrs.py .................. [ 0%] 509s tests/test_convenience.py .....ss...................ssssssss.s.......... [ 1%] 509s ..................................................ssssssssssssssssssssss [ 3%] 509s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 4%] 509s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 6%] 509s ssssssssssssss [ 6%] 510s tests/test_core.py ..................................................... [ 7%] 511s ........................................................................ [ 9%] 513s ................................................................ssssssss [ 11%] 513s sssssssssssssssssssssssssssssssssssssss................................. [ 12%] 515s ........................................................................ [ 14%] 516s ........................................................................ [ 16%] 517s .............sssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 17%] 517s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 19%] 525s ssssssssss.............................................................. [ 20%] 527s ........................................................................ [ 22%] 528s ........................................................................ [ 24%] 530s ........................................................................ [ 25%] 530s ........................................................................ [ 27%] 532s ........................................................................ [ 29%] 534s ........................................................................ [ 30%] 537s ..................................................................s..... [ 32%] 541s ........................................................................ [ 34%] 542s ...................s..........ssssssssssssssssssssssssssssssssssssssssss [ 35%] 542s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 37%] 542s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 38%] 542s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 40%] 542s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 42%] 542s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 43%] 542s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 45%] 542s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 47%] 542s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 48%] 542s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 50%] 542s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 52%] 543s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 53%] 543s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 55%] 543s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 56%] 543s ssssssssssssssss...... [ 57%] 543s tests/test_creation.py ................................................. [ 58%] 543s ..................................ss..... [ 59%] 543s tests/test_dim_separator.py ..........................x....x [ 60%] 543s tests/test_filters.py ...... [ 60%] 550s tests/test_indexing.py ................................................. [ 61%] 550s ......xx...... [ 61%] 550s tests/test_info.py .. [ 61%] 550s tests/test_meta.py ......................... [ 62%] 550s tests/test_meta_array.py .sss.sss.sss.sss.sss.sss.sss.sss..ssssss..sssss [ 63%] 550s s..ssssss..ssssss [ 63%] 550s tests/test_n5.py ..... [ 63%] 550s tests/test_storage.py ...................s........................s..... [ 65%] 550s ...................s.................................................... [ 66%] 551s .......................ss..............s................................ [ 68%] 551s ........................................................................ [ 69%] 551s ....................ss.................................................. [ 71%] 551s .............s.......................................................... [ 73%] 551s ........................................................................ [ 74%] 551s .....ssssssssssssssssssssssssssssssssssssssssssssssss................... [ 76%] 552s ...............................sssssssssssssssssssssssssssssssssssssssss [ 78%] 552s sssssss.............s.................ssssssssssssssssssssssssss....... [ 79%] 552s tests/test_storage_v3.py sssssssssssssssssssssssssssssssssssssssssssssss [ 80%] 552s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 82%] 552s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 84%] 552s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 85%] 552s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 87%] 552s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 88%] 552s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 90%] 552s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 92%] 552s sssssssssssssssssssssssssssssssssssssssssss [ 93%] 553s tests/test_sync.py ..................................................... [ 94%] 553s ........................................................................ [ 96%] 555s ........................................................................ [ 97%] 556s ........................................................................ [ 99%] 557s ........... [ 99%] 557s tests/test_util.py .................. [100%] 557s 557s =============================== warnings summary =============================== 557s tests/test_storage.py::TestZipStore::test_store_and_retrieve_ndarray 557s /usr/lib/python3.12/zipfile/__init__.py:1607: UserWarning: Duplicate name: 'foo' 557s return self._open_to_write(zinfo, force_zip64=force_zip64) 557s 557s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_setitem 557s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_setitem 557s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_append 557s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_append 557s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_create_group 557s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_create_group 557s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_require_group 557s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_require_group 557s /usr/lib/python3.12/multiprocessing/popen_fork.py:66: DeprecationWarning: This process (pid=3535) is multi-threaded, use of fork() may lead to deadlocks in the child. 557s self.pid = os.fork() 557s 557s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 557s ============================= slowest 10 durations ============================= 557s 4.73s call tests/test_indexing.py::test_set_orthogonal_selection_3d 557s 0.99s call tests/test_core.py::TestArrayWithSQLiteStore::test_islice 557s 0.98s call tests/test_core.py::TestArrayWithSQLiteStore::test_iter 557s 0.98s call tests/test_core.py::TestArrayWithFSStorePartialRead::test_non_cont 557s 0.91s call tests/test_indexing.py::test_set_orthogonal_selection_2d 557s 0.71s call tests/test_core.py::TestArrayWithSQLiteStore::test_object_arrays_vlen_array 557s 0.67s call tests/test_core.py::TestArrayWithSQLiteStore::test_array_order 557s 0.65s call tests/test_core.py::TestArrayWithLZMACompressor::test_object_arrays_vlen_array 557s 0.64s call tests/test_core.py::TestArrayWithSQLiteStore::test_append_2d_axis 557s 0.60s call tests/test_core.py::TestArrayWithSQLiteStore::test_resize_2d 557s == 2250 passed, 2151 skipped, 769 deselected, 4 xfailed, 9 warnings in 50.19s == 559s pybuild-autopkgtest: error: pybuild --autopkgtest --test-pytest -i python{version} -p "3.13 3.12" returned exit code 13 559s make: *** [/tmp/3W7TwvsC56/run:4: pybuild-autopkgtest] Error 25 559s pybuild-autopkgtest: error: /tmp/3W7TwvsC56/run pybuild-autopkgtest returned exit code 2 559s autopkgtest [09:44:10]: test pybuild-autopkgtest: -----------------------] 560s autopkgtest [09:44:11]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 560s pybuild-autopkgtest FAIL non-zero exit status 25 560s autopkgtest [09:44:11]: @@@@@@@@@@@@@@@@@@@@ summary 560s pybuild-autopkgtest FAIL non-zero exit status 25 573s nova [W] Skipping flock for amd64 573s Creating nova instance adt-plucky-amd64-zarr-20241203-093450-juju-7f2275-prod-proposed-migration-environment-2-8685e6f9-20eb-4381-a0a4-ceb7f09998de from image adt/ubuntu-plucky-amd64-server-20241203.img (UUID 9e8e99d5-3366-42e6-8f42-63b527e5abcc)... 573s nova [W] nova quota exceeded (attempt #0)