0s autopkgtest [20:30:27]: starting date and time: 2024-11-23 20:30:27+0000 0s autopkgtest [20:30:27]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [20:30:27]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.6s57iss4/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:numcodecs,src:python3-defaults --apt-upgrade zarr --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=numcodecs/0.14.1+ds-1 python3-defaults/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-18.secgroup --name adt-plucky-amd64-zarr-20241123-203026-juju-7f2275-prod-proposed-migration-environment-15-21e5d7a6-f924-4b1e-8705-d772f7583e7d --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 44s autopkgtest [20:31:11]: testbed dpkg architecture: amd64 44s autopkgtest [20:31:11]: testbed apt version: 2.9.8 44s autopkgtest [20:31:11]: @@@@@@@@@@@@@@@@@@@@ test bed setup 47s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 48s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.6 kB] 48s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [930 kB] 48s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [54.8 kB] 48s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9704 B] 48s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [43.4 kB] 48s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [91.3 kB] 48s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2408 B] 48s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [40.1 kB] 48s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [295 kB] 48s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [806 kB] 49s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [20.0 kB] 49s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [5528 B] 49s Fetched 2386 kB in 1s (1655 kB/s) 49s Reading package lists... 54s Reading package lists... 55s Building dependency tree... 55s Reading state information... 55s Calculating upgrade... 55s The following package was automatically installed and is no longer required: 55s libsgutils2-1.46-2 55s Use 'sudo apt autoremove' to remove it. 55s The following NEW packages will be installed: 55s libsgutils2-1.48 55s The following packages will be upgraded: 55s amd64-microcode bash bpftrace curl debconf debconf-i18n distro-info 55s fwupd-signed gir1.2-girepository-2.0 gir1.2-glib-2.0 hostname 55s intel-microcode libaudit-common libaudit1 libcurl3t64-gnutls libcurl4t64 55s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libpam-modules 55s libpam-modules-bin libpam-runtime libpam0g libplymouth5 libpython3-stdlib 55s libselinux1 libsemanage-common libsemanage2 linux-base lxd-installer 55s openssh-client openssh-server openssh-sftp-server plymouth 55s plymouth-theme-ubuntu-text python3 python3-blinker python3-dbus 55s python3-debconf python3-gi python3-jsonschema-specifications python3-minimal 55s python3-rpds-py python3-yaml sg3-utils sg3-utils-udev vim-common vim-tiny 55s xxd 55s 49 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 55s Need to get 19.9 MB of archives. 55s After this operation, 4441 kB of additional disk space will be used. 55s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 bash amd64 5.2.32-1ubuntu2 [918 kB] 56s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 hostname amd64 3.25 [11.1 kB] 56s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu1 [6578 B] 56s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu1 [53.9 kB] 56s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 debconf-i18n all 1.5.87ubuntu1 [204 kB] 56s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 56s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 56s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 56s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-debconf all 1.5.87ubuntu1 [4156 B] 56s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 debconf all 1.5.87ubuntu1 [124 kB] 56s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam0g amd64 1.5.3-7ubuntu4 [69.6 kB] 56s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu1 [86.9 kB] 56s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-modules-bin amd64 1.5.3-7ubuntu4 [53.7 kB] 56s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-modules amd64 1.5.3-7ubuntu4 [294 kB] 56s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 openssh-sftp-server amd64 1:9.9p1-3ubuntu2 [41.2 kB] 56s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 openssh-server amd64 1:9.9p1-3ubuntu2 [625 kB] 56s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 openssh-client amd64 1:9.9p1-3ubuntu2 [1080 kB] 57s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-runtime all 1.5.3-7ubuntu4 [40.8 kB] 57s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2build1 [7186 B] 57s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2build1 [105 kB] 57s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 distro-info amd64 1.12 [20.0 kB] 57s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.82.0-2 [25.3 kB] 57s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.82.2-3 [182 kB] 57s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.82.2-3 [1655 kB] 57s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.82.0-2 [88.7 kB] 58s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.82.2-3 [51.7 kB] 58s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build4 [110 kB] 58s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-3build1 [293 kB] 58s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build1 [187 kB] 58s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 vim-tiny amd64 2:9.1.0861-1ubuntu1 [1037 kB] 58s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 vim-common all 2:9.1.0861-1ubuntu1 [395 kB] 58s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 xxd amd64 2:9.1.0861-1ubuntu1 [67.8 kB] 58s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libplymouth5 amd64 24.004.60-2ubuntu3 [145 kB] 58s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 plymouth-theme-ubuntu-text amd64 24.004.60-2ubuntu3 [10.3 kB] 58s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 plymouth amd64 24.004.60-2ubuntu3 [140 kB] 58s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftrace amd64 0.21.2-2ubuntu3 [1787 kB] 58s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.9.1-2ubuntu3 [243 kB] 58s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.9.1-2ubuntu3 [420 kB] 58s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd-signed amd64 1.55+1.7-1 [30.6 kB] 58s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.9.1-2ubuntu3 [412 kB] 58s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libsgutils2-1.48 amd64 1.48-0ubuntu1 [124 kB] 58s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-base all 4.10.1ubuntu1 [34.8 kB] 58s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 lxd-installer all 10 [5264 B] 58s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-blinker all 1.9.0-1 [10.7 kB] 58s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu1 [323 kB] 58s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jsonschema-specifications all 2023.12.1-2 [9116 B] 58s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 sg3-utils amd64 1.48-0ubuntu1 [1042 kB] 58s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 sg3-utils-udev all 1.48-0ubuntu1 [6608 B] 58s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 amd64-microcode amd64 3.20240820.1ubuntu1 [187 kB] 58s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 intel-microcode amd64 3.20241112.1ubuntu2 [7055 kB] 59s Preconfiguring packages ... 59s Fetched 19.9 MB in 3s (6128 kB/s) 59s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75620 files and directories currently installed.) 59s Preparing to unpack .../bash_5.2.32-1ubuntu2_amd64.deb ... 59s Unpacking bash (5.2.32-1ubuntu2) over (5.2.32-1ubuntu1) ... 59s Setting up bash (5.2.32-1ubuntu2) ... 59s update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode 59s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75620 files and directories currently installed.) 59s Preparing to unpack .../hostname_3.25_amd64.deb ... 59s Unpacking hostname (3.25) over (3.23+nmu2ubuntu2) ... 59s Setting up hostname (3.25) ... 59s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75620 files and directories currently installed.) 59s Preparing to unpack .../libaudit-common_1%3a4.0.2-2ubuntu1_all.deb ... 59s Unpacking libaudit-common (1:4.0.2-2ubuntu1) over (1:4.0.1-1ubuntu2) ... 59s Setting up libaudit-common (1:4.0.2-2ubuntu1) ... 59s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75620 files and directories currently installed.) 59s Preparing to unpack .../libaudit1_1%3a4.0.2-2ubuntu1_amd64.deb ... 59s Unpacking libaudit1:amd64 (1:4.0.2-2ubuntu1) over (1:4.0.1-1ubuntu2) ... 59s Setting up libaudit1:amd64 (1:4.0.2-2ubuntu1) ... 59s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75620 files and directories currently installed.) 59s Preparing to unpack .../debconf-i18n_1.5.87ubuntu1_all.deb ... 59s Unpacking debconf-i18n (1.5.87ubuntu1) over (1.5.86ubuntu1) ... 59s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 59s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 59s Setting up python3-minimal (3.12.7-1) ... 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75620 files and directories currently installed.) 60s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 60s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 60s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 60s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 60s Preparing to unpack .../python3-debconf_1.5.87ubuntu1_all.deb ... 60s Unpacking python3-debconf (1.5.87ubuntu1) over (1.5.86ubuntu1) ... 60s Preparing to unpack .../debconf_1.5.87ubuntu1_all.deb ... 60s Unpacking debconf (1.5.87ubuntu1) over (1.5.86ubuntu1) ... 60s Setting up debconf (1.5.87ubuntu1) ... 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75620 files and directories currently installed.) 60s Preparing to unpack .../libpam0g_1.5.3-7ubuntu4_amd64.deb ... 60s Unpacking libpam0g:amd64 (1.5.3-7ubuntu4) over (1.5.3-7ubuntu2) ... 60s Setting up libpam0g:amd64 (1.5.3-7ubuntu4) ... 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75620 files and directories currently installed.) 60s Preparing to unpack .../libselinux1_3.7-3ubuntu1_amd64.deb ... 60s Unpacking libselinux1:amd64 (3.7-3ubuntu1) over (3.5-2ubuntu5) ... 60s Setting up libselinux1:amd64 (3.7-3ubuntu1) ... 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75620 files and directories currently installed.) 60s Preparing to unpack .../libpam-modules-bin_1.5.3-7ubuntu4_amd64.deb ... 60s Unpacking libpam-modules-bin (1.5.3-7ubuntu4) over (1.5.3-7ubuntu2) ... 60s Setting up libpam-modules-bin (1.5.3-7ubuntu4) ... 60s pam_namespace.service is a disabled or a static unit not running, not starting it. 61s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75620 files and directories currently installed.) 61s Preparing to unpack .../libpam-modules_1.5.3-7ubuntu4_amd64.deb ... 61s Unpacking libpam-modules:amd64 (1.5.3-7ubuntu4) over (1.5.3-7ubuntu2) ... 61s Setting up libpam-modules:amd64 (1.5.3-7ubuntu4) ... 61s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75620 files and directories currently installed.) 61s Preparing to unpack .../openssh-sftp-server_1%3a9.9p1-3ubuntu2_amd64.deb ... 61s Unpacking openssh-sftp-server (1:9.9p1-3ubuntu2) over (1:9.7p1-7ubuntu5) ... 61s Preparing to unpack .../openssh-server_1%3a9.9p1-3ubuntu2_amd64.deb ... 61s Unpacking openssh-server (1:9.9p1-3ubuntu2) over (1:9.7p1-7ubuntu5) ... 61s Preparing to unpack .../openssh-client_1%3a9.9p1-3ubuntu2_amd64.deb ... 61s Unpacking openssh-client (1:9.9p1-3ubuntu2) over (1:9.7p1-7ubuntu5) ... 61s Preparing to unpack .../libpam-runtime_1.5.3-7ubuntu4_all.deb ... 61s Unpacking libpam-runtime (1.5.3-7ubuntu4) over (1.5.3-7ubuntu2) ... 61s Setting up libpam-runtime (1.5.3-7ubuntu4) ... 61s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75622 files and directories currently installed.) 61s Preparing to unpack .../libsemanage-common_3.7-2build1_all.deb ... 61s Unpacking libsemanage-common (3.7-2build1) over (3.5-1build6) ... 61s Setting up libsemanage-common (3.7-2build1) ... 61s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75621 files and directories currently installed.) 61s Preparing to unpack .../libsemanage2_3.7-2build1_amd64.deb ... 61s Unpacking libsemanage2:amd64 (3.7-2build1) over (3.5-1build6) ... 61s Setting up libsemanage2:amd64 (3.7-2build1) ... 61s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75621 files and directories currently installed.) 61s Preparing to unpack .../00-distro-info_1.12_amd64.deb ... 61s Unpacking distro-info (1.12) over (1.9) ... 61s Preparing to unpack .../01-gir1.2-girepository-2.0_1.82.0-2_amd64.deb ... 61s Unpacking gir1.2-girepository-2.0:amd64 (1.82.0-2) over (1.80.1-4) ... 61s Preparing to unpack .../02-gir1.2-glib-2.0_2.82.2-3_amd64.deb ... 61s Unpacking gir1.2-glib-2.0:amd64 (2.82.2-3) over (2.82.1-0ubuntu1) ... 61s Preparing to unpack .../03-libglib2.0-0t64_2.82.2-3_amd64.deb ... 61s Unpacking libglib2.0-0t64:amd64 (2.82.2-3) over (2.82.1-0ubuntu1) ... 61s Preparing to unpack .../04-libgirepository-1.0-1_1.82.0-2_amd64.deb ... 61s Unpacking libgirepository-1.0-1:amd64 (1.82.0-2) over (1.80.1-4) ... 62s Preparing to unpack .../05-libglib2.0-data_2.82.2-3_all.deb ... 62s Unpacking libglib2.0-data (2.82.2-3) over (2.82.1-0ubuntu1) ... 62s Preparing to unpack .../06-python3-dbus_1.3.2-5build4_amd64.deb ... 62s Unpacking python3-dbus (1.3.2-5build4) over (1.3.2-5build3) ... 62s Preparing to unpack .../07-python3-gi_3.50.0-3build1_amd64.deb ... 62s Unpacking python3-gi (3.50.0-3build1) over (3.50.0-3) ... 62s Preparing to unpack .../08-python3-yaml_6.0.2-1build1_amd64.deb ... 62s Unpacking python3-yaml (6.0.2-1build1) over (6.0.2-1) ... 62s Preparing to unpack .../09-vim-tiny_2%3a9.1.0861-1ubuntu1_amd64.deb ... 62s Unpacking vim-tiny (2:9.1.0861-1ubuntu1) over (2:9.1.0777-1ubuntu1) ... 62s Preparing to unpack .../10-vim-common_2%3a9.1.0861-1ubuntu1_all.deb ... 62s Unpacking vim-common (2:9.1.0861-1ubuntu1) over (2:9.1.0777-1ubuntu1) ... 62s Preparing to unpack .../11-xxd_2%3a9.1.0861-1ubuntu1_amd64.deb ... 62s Unpacking xxd (2:9.1.0861-1ubuntu1) over (2:9.1.0777-1ubuntu1) ... 62s Preparing to unpack .../12-libplymouth5_24.004.60-2ubuntu3_amd64.deb ... 62s Unpacking libplymouth5:amd64 (24.004.60-2ubuntu3) over (24.004.60-1ubuntu11) ... 62s Preparing to unpack .../13-plymouth-theme-ubuntu-text_24.004.60-2ubuntu3_amd64.deb ... 62s Unpacking plymouth-theme-ubuntu-text (24.004.60-2ubuntu3) over (24.004.60-1ubuntu11) ... 62s Preparing to unpack .../14-plymouth_24.004.60-2ubuntu3_amd64.deb ... 62s Unpacking plymouth (24.004.60-2ubuntu3) over (24.004.60-1ubuntu11) ... 62s Preparing to unpack .../15-bpftrace_0.21.2-2ubuntu3_amd64.deb ... 62s Unpacking bpftrace (0.21.2-2ubuntu3) over (0.21.2-2ubuntu2) ... 62s Preparing to unpack .../16-curl_8.9.1-2ubuntu3_amd64.deb ... 62s Unpacking curl (8.9.1-2ubuntu3) over (8.9.1-2ubuntu2) ... 62s Preparing to unpack .../17-libcurl4t64_8.9.1-2ubuntu3_amd64.deb ... 62s Unpacking libcurl4t64:amd64 (8.9.1-2ubuntu3) over (8.9.1-2ubuntu2) ... 62s Preparing to unpack .../18-fwupd-signed_1.55+1.7-1_amd64.deb ... 62s Unpacking fwupd-signed (1.55+1.7-1) over (1.54+1.6-1build1) ... 62s Preparing to unpack .../19-libcurl3t64-gnutls_8.9.1-2ubuntu3_amd64.deb ... 62s Unpacking libcurl3t64-gnutls:amd64 (8.9.1-2ubuntu3) over (8.9.1-2ubuntu2) ... 62s Selecting previously unselected package libsgutils2-1.48:amd64. 62s Preparing to unpack .../20-libsgutils2-1.48_1.48-0ubuntu1_amd64.deb ... 62s Unpacking libsgutils2-1.48:amd64 (1.48-0ubuntu1) ... 62s Preparing to unpack .../21-linux-base_4.10.1ubuntu1_all.deb ... 62s Unpacking linux-base (4.10.1ubuntu1) over (4.5ubuntu9) ... 62s Preparing to unpack .../22-lxd-installer_10_all.deb ... 62s Unpacking lxd-installer (10) over (9) ... 62s Preparing to unpack .../23-python3-blinker_1.9.0-1_all.deb ... 63s Unpacking python3-blinker (1.9.0-1) over (1.8.2-1) ... 63s Preparing to unpack .../24-python3-rpds-py_0.21.0-2ubuntu1_amd64.deb ... 63s Unpacking python3-rpds-py (0.21.0-2ubuntu1) over (0.20.0-0ubuntu3) ... 63s Preparing to unpack .../25-python3-jsonschema-specifications_2023.12.1-2_all.deb ... 63s Unpacking python3-jsonschema-specifications (2023.12.1-2) over (2023.12.1-1ubuntu1) ... 63s Preparing to unpack .../26-sg3-utils_1.48-0ubuntu1_amd64.deb ... 63s Unpacking sg3-utils (1.48-0ubuntu1) over (1.46-3ubuntu5) ... 63s Preparing to unpack .../27-sg3-utils-udev_1.48-0ubuntu1_all.deb ... 63s Unpacking sg3-utils-udev (1.48-0ubuntu1) over (1.46-3ubuntu5) ... 63s Preparing to unpack .../28-amd64-microcode_3.20240820.1ubuntu1_amd64.deb ... 63s Unpacking amd64-microcode (3.20240820.1ubuntu1) over (3.20240116.2+nmu1ubuntu1.1) ... 63s Preparing to unpack .../29-intel-microcode_3.20241112.1ubuntu2_amd64.deb ... 63s Unpacking intel-microcode (3.20241112.1ubuntu2) over (3.20240910.0ubuntu1) ... 63s Setting up distro-info (1.12) ... 63s Setting up linux-base (4.10.1ubuntu1) ... 63s Setting up libcurl4t64:amd64 (8.9.1-2ubuntu3) ... 63s Setting up bpftrace (0.21.2-2ubuntu3) ... 63s Setting up openssh-client (1:9.9p1-3ubuntu2) ... 63s Setting up intel-microcode (3.20241112.1ubuntu2) ... 63s intel-microcode: microcode will be updated at next boot 63s Setting up libcurl3t64-gnutls:amd64 (8.9.1-2ubuntu3) ... 63s Setting up fwupd-signed (1.55+1.7-1) ... 63s Setting up libsgutils2-1.48:amd64 (1.48-0ubuntu1) ... 63s Setting up debconf-i18n (1.5.87ubuntu1) ... 63s Setting up amd64-microcode (3.20240820.1ubuntu1) ... 63s amd64-microcode: microcode will be updated at next boot 63s Setting up xxd (2:9.1.0861-1ubuntu1) ... 63s Setting up libglib2.0-0t64:amd64 (2.82.2-3) ... 63s No schema files found: doing nothing. 63s Setting up libglib2.0-data (2.82.2-3) ... 63s Setting up vim-common (2:9.1.0861-1ubuntu1) ... 63s Setting up gir1.2-glib-2.0:amd64 (2.82.2-3) ... 63s Setting up lxd-installer (10) ... 64s Setting up libplymouth5:amd64 (24.004.60-2ubuntu3) ... 64s Setting up libgirepository-1.0-1:amd64 (1.82.0-2) ... 64s Setting up curl (8.9.1-2ubuntu3) ... 64s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 64s Setting up sg3-utils (1.48-0ubuntu1) ... 64s Setting up openssh-sftp-server (1:9.9p1-3ubuntu2) ... 64s Setting up openssh-server (1:9.9p1-3ubuntu2) ... 64s Installing new version of config file /etc/ssh/moduli ... 64s Replacing config file /etc/ssh/sshd_config with new version 65s Setting up plymouth (24.004.60-2ubuntu3) ... 65s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic 65s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 74s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 74s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 74s Setting up python3 (3.12.7-1) ... 74s Setting up vim-tiny (2:9.1.0861-1ubuntu1) ... 74s Setting up sg3-utils-udev (1.48-0ubuntu1) ... 76s update-initramfs: deferring update (trigger activated) 76s Setting up plymouth-theme-ubuntu-text (24.004.60-2ubuntu3) ... 76s update-initramfs: deferring update (trigger activated) 76s Setting up gir1.2-girepository-2.0:amd64 (1.82.0-2) ... 76s Setting up python3-gi (3.50.0-3build1) ... 76s Setting up python3-rpds-py (0.21.0-2ubuntu1) ... 76s Setting up python3-jsonschema-specifications (2023.12.1-2) ... 76s Setting up python3-blinker (1.9.0-1) ... 76s Setting up python3-dbus (1.3.2-5build4) ... 76s Setting up python3-debconf (1.5.87ubuntu1) ... 76s Setting up python3-yaml (6.0.2-1build1) ... 76s Processing triggers for man-db (2.13.0-1) ... 76s Processing triggers for debianutils (5.21) ... 76s Processing triggers for install-info (7.1.1-1) ... 76s Processing triggers for initramfs-tools (0.142ubuntu35) ... 76s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic 76s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 85s Processing triggers for libc-bin (2.40-1ubuntu3) ... 85s Processing triggers for ufw (0.36.2-8) ... 85s Reading package lists... 85s Building dependency tree... 85s Reading state information... 85s The following packages will be REMOVED: 85s libsgutils2-1.46-2* 85s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. 85s After this operation, 294 kB disk space will be freed. 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75656 files and directories currently installed.) 87s Removing libsgutils2-1.46-2:amd64 (1.46-3ubuntu5) ... 87s Processing triggers for libc-bin (2.40-1ubuntu3) ... 98s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 98s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 98s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 99s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 99s Reading package lists... 99s Reading package lists... 100s Building dependency tree... 100s Reading state information... 100s Calculating upgrade... 100s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 100s Reading package lists... 100s Building dependency tree... 100s Reading state information... 100s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s autopkgtest [20:32:25]: rebooting testbed after setup commands that affected boot 185s autopkgtest [20:33:32]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 190s autopkgtest [20:33:37]: @@@@@@@@@@@@@@@@@@@@ apt-source zarr 193s Get:1 http://ftpmaster.internal/ubuntu plucky/universe zarr 2.18.3+ds-1 (dsc) [2647 B] 193s Get:2 http://ftpmaster.internal/ubuntu plucky/universe zarr 2.18.3+ds-1 (tar) [984 kB] 193s Get:3 http://ftpmaster.internal/ubuntu plucky/universe zarr 2.18.3+ds-1 (diff) [5696 B] 193s gpgv: Signature made Sat Sep 7 10:28:17 2024 UTC 193s gpgv: using RSA key 3B70F209A5FFD68903C472C5EBF48AB2578F9812 193s gpgv: issuer "antonio.valentino@tiscali.it" 193s gpgv: Can't check signature: No public key 193s dpkg-source: warning: cannot verify inline signature for ./zarr_2.18.3+ds-1.dsc: no acceptable signature found 193s autopkgtest [20:33:40]: testing package zarr version 2.18.3+ds-1 194s autopkgtest [20:33:41]: build not needed 195s autopkgtest [20:33:42]: test pybuild-autopkgtest: preparing testbed 198s Reading package lists... 198s Building dependency tree... 198s Reading state information... 198s Starting pkgProblemResolver with broken count: 0 198s Starting 2 pkgProblemResolver with broken count: 0 198s Done 199s The following additional packages will be installed: 199s autoconf automake autopoint autotools-dev build-essential cpp cpp-14 199s cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu debhelper debugedit 199s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz g++ 199s g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 199s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian libaec0 199s libarchive-zip-perl libasan8 libblas3 libblosc1 libcc1-0 libdebhelper-perl 199s libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 libgomp1 199s libhdf5-103-1t64 libhdf5-hl-100t64 libhwasan0 libisl23 libitm1 libjs-jquery 199s libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 liblsan0 liblzf1 199s libmpc3 libpython3.13-minimal libpython3.13-stdlib libquadmath0 libsnappy1v5 199s libstdc++-14-dev libsz2 libtool libtsan2 libubsan1 m4 po-debconf 199s pybuild-plugin-autopkgtest pybuild-plugin-pyproject python3-alabaster 199s python3-all python3-asciitree python3-bs4 python3-build python3-defusedxml 199s python3-docutils python3-fasteners python3-fsspec python3-h5py 199s python3-h5py-serial python3-imagesize python3-iniconfig python3-installer 199s python3-monotonic python3-msgpack python3-numcodecs python3-numpy 199s python3-numpydoc python3-packaging python3-pluggy 199s python3-pydata-sphinx-theme python3-pyproject-hooks python3-pytest 199s python3-pytest-doctestplus python3-pytest-timeout python3-roman 199s python3-setuptools-scm python3-snowballstemmer python3-soupsieve 199s python3-sphinx python3-sphinx-automodapi python3-sphinx-copybutton 199s python3-sphinx-design python3-sphinx-issues python3-tabulate python3-toml 199s python3-wheel python3-zarr python3.13 python3.13-minimal sgml-base 199s sphinx-common xml-core 199s Suggested packages: 199s autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales 199s cpp-14-doc dh-make flit g++-multilib g++-14-multilib gcc-14-doc gcc-multilib 199s manpages-dev flex bison gdb gcc-doc gcc-14-multilib gdb-x86-64-linux-gnu 199s gettext-doc libasprintf-dev libgettextpo-dev libstdc++-14-doc libtool-doc 199s gfortran | fortran95-compiler gcj-jdk m4-doc libmail-box-perl python3-pip 199s python3-venv python-build-doc docutils-doc fonts-linuxlibertine 199s | ttf-linux-libertine texlive-lang-french texlive-latex-base 199s texlive-latex-recommended python-fsspec-doc python-h5py-doc 199s python-installer-doc www-browser gfortran python-numpy-doc python3-dev 199s python3-stemmer dvipng dvisvgm fonts-freefont-otf imagemagick-6.q16 latexmk 199s libjs-mathjax python3-sphinx-rtd-theme sphinx-doc tex-gyre 199s texlive-fonts-extra texlive-fonts-recommended texlive-latex-extra 199s texlive-plain-generic python-sphinx-copybutton-doc jupyter-notebook 199s python3.13-venv python3.13-doc binfmt-support sgml-base-doc 199s Recommended packages: 199s libarchive-cpio-perl javascript-common libjson-xs-perl libltdl-dev 199s libmail-sendmail-perl python3-lxml libpaper-utils python3-pil git 199s python3-dask python3-distributed python3-dropbox python3-fusepy 199s python3-libarchive-c python3-paramiko python3-pygit2 python3-zfpy 199s python3-accessible-pygments python3-pytest-remotedata graphviz 199s The following NEW packages will be installed: 199s autoconf automake autopkgtest-satdep autopoint autotools-dev build-essential 199s cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu debhelper debugedit 199s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz g++ 199s g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 199s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian libaec0 199s libarchive-zip-perl libasan8 libblas3 libblosc1 libcc1-0 libdebhelper-perl 199s libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 libgomp1 199s libhdf5-103-1t64 libhdf5-hl-100t64 libhwasan0 libisl23 libitm1 libjs-jquery 199s libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 liblsan0 liblzf1 199s libmpc3 libpython3.13-minimal libpython3.13-stdlib libquadmath0 libsnappy1v5 199s libstdc++-14-dev libsz2 libtool libtsan2 libubsan1 m4 po-debconf 199s pybuild-plugin-autopkgtest pybuild-plugin-pyproject python3-alabaster 199s python3-all python3-asciitree python3-bs4 python3-build python3-defusedxml 199s python3-docutils python3-fasteners python3-fsspec python3-h5py 199s python3-h5py-serial python3-imagesize python3-iniconfig python3-installer 199s python3-monotonic python3-msgpack python3-numcodecs python3-numpy 199s python3-numpydoc python3-packaging python3-pluggy 199s python3-pydata-sphinx-theme python3-pyproject-hooks python3-pytest 199s python3-pytest-doctestplus python3-pytest-timeout python3-roman 199s python3-setuptools-scm python3-snowballstemmer python3-soupsieve 199s python3-sphinx python3-sphinx-automodapi python3-sphinx-copybutton 199s python3-sphinx-design python3-sphinx-issues python3-tabulate python3-toml 199s python3-wheel python3-zarr python3.13 python3.13-minimal sgml-base 199s sphinx-common xml-core 199s 0 upgraded, 108 newly installed, 0 to remove and 0 not upgraded. 199s Need to get 93.5 MB/93.5 MB of archives. 199s After this operation, 363 MB of additional disk space will be used. 199s Get:1 /tmp/autopkgtest.BOLBJA/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [928 B] 199s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 199s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 200s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 sgml-base all 1.31 [11.4 kB] 200s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 m4 amd64 1.4.19-4build1 [244 kB] 200s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 autoconf all 2.72-3 [382 kB] 200s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 autotools-dev all 20220109.1 [44.9 kB] 200s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 200s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 autopoint all 0.22.5-2 [616 kB] 200s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 200s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 200s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [11.9 MB] 201s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-8ubuntu1 [1030 B] 201s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 201s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 201s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-8ubuntu1 [47.6 kB] 201s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 202s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-8ubuntu1 [29.1 kB] 202s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-8ubuntu1 [2998 kB] 202s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-8ubuntu1 [1317 kB] 202s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-8ubuntu1 [2732 kB] 203s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-8ubuntu1 [1177 kB] 203s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-8ubuntu1 [1634 kB] 203s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-8ubuntu1 [153 kB] 204s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-8ubuntu1 [2814 kB] 204s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [23.3 MB] 216s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-8ubuntu1 [528 kB] 216s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 216s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 216s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-8ubuntu1 [2504 kB] 217s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [13.3 MB] 224s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-8ubuntu1 [19.9 kB] 224s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 224s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 224s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 224s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 224s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libtool all 2.4.7-8 [166 kB] 224s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-autoreconf all 20 [16.1 kB] 224s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] 224s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 225s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-strip-nondeterminism all 1.14.0-1 [5058 B] 225s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 debugedit amd64 1:5.1-1 [46.9 kB] 225s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 dwz amd64 0.15-1build6 [115 kB] 225s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 gettext amd64 0.22.5-2 [948 kB] 225s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 225s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] 226s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 debhelper all 13.20ubuntu1 [893 kB] 226s Get:48 http://ftpmaster.internal/ubuntu plucky/universe amd64 dh-python all 6.20241024 [112 kB] 226s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 xml-core all 0.19 [20.3 kB] 226s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 docutils-common all 0.21.2+dfsg-2 [131 kB] 227s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 227s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 227s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libsnappy1v5 amd64 1.2.1-1 [30.4 kB] 227s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 libblosc1 amd64 1.21.5+ds-1build1 [36.2 kB] 227s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 228s Get:56 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 228s Get:57 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1280 kB] 228s Get:58 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4ubuntu3 [56.6 kB] 228s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 229s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 229s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 229s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libjson-perl all 4.10000-1 [81.9 kB] 229s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 230s Get:64 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 230s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 231s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-autopkgtest all 6.20241024 [1746 B] 231s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.2-1 [51.5 kB] 231s Get:68 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 231s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-toml all 0.10.2-1 [16.5 kB] 231s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-wheel all 0.45.0-1 [57.7 kB] 231s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-build all 1.2.2-1 [31.0 kB] 231s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 232s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-pyproject all 6.20241024 [1728 B] 232s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 232s Get:75 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 232s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-asciitree all 0.3.3-4 [5644 B] 232s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-soupsieve all 2.6-1 [33.0 kB] 232s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bs4 all 4.12.3-3 [109 kB] 232s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-defusedxml all 0.7.1-2 [42.0 kB] 232s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-roman all 4.2-1 [10.0 kB] 232s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-docutils all 0.21.2+dfsg-2 [409 kB] 233s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-monotonic all 1.6-2 [5732 B] 233s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-fasteners all 0.18-2 [12.5 kB] 233s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fsspec all 2024.9.0-1 [207 kB] 233s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11ubuntu1 [5319 kB] 236s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py-serial amd64 3.11.0-5ubuntu1 [1107 kB] 236s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py all 3.11.0-5ubuntu1 [7974 B] 236s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-imagesize all 1.4.1-1 [6844 B] 236s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 236s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-msgpack amd64 1.0.3-3build3 [113 kB] 236s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 sphinx-common all 7.4.7-4 [775 kB] 237s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-alabaster all 0.7.16-0.1 [18.5 kB] 237s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 237s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-sphinx all 7.4.7-4 [593 kB] 237s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pydata-sphinx-theme all 0.15.4+dfsg-2 [41.5 kB] 237s Get:96 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-numcodecs amd64 0.14.1+ds-1 [567 kB] 237s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tabulate all 0.9.0-1 [45.3 kB] 237s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-numpydoc all 1.6.0-2 [50.5 kB] 237s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 238s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 238s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest-doctestplus all 1.2.1-2 [23.5 kB] 238s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest-timeout all 2.3.1-1 [22.1 kB] 238s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-setuptools-scm all 8.1.0-1 [32.2 kB] 238s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinx-automodapi all 0.18.0-1 [37.6 kB] 238s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinx-copybutton all 0.5.2-2 [16.6 kB] 238s Get:106 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinx-design all 0.6.1-1 [894 kB] 238s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinx-issues all 5.0.0-1 [10.2 kB] 239s Get:108 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-zarr all 2.18.3+ds-1 [410 kB] 239s Fetched 93.5 MB in 40s (2346 kB/s) 239s Selecting previously unselected package libpython3.13-minimal:amd64. 239s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75651 files and directories currently installed.) 239s Preparing to unpack .../000-libpython3.13-minimal_3.13.0-2_amd64.deb ... 239s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 239s Selecting previously unselected package python3.13-minimal. 239s Preparing to unpack .../001-python3.13-minimal_3.13.0-2_amd64.deb ... 239s Unpacking python3.13-minimal (3.13.0-2) ... 239s Selecting previously unselected package sgml-base. 240s Preparing to unpack .../002-sgml-base_1.31_all.deb ... 240s Unpacking sgml-base (1.31) ... 240s Selecting previously unselected package m4. 240s Preparing to unpack .../003-m4_1.4.19-4build1_amd64.deb ... 240s Unpacking m4 (1.4.19-4build1) ... 240s Selecting previously unselected package autoconf. 240s Preparing to unpack .../004-autoconf_2.72-3_all.deb ... 240s Unpacking autoconf (2.72-3) ... 240s Selecting previously unselected package autotools-dev. 240s Preparing to unpack .../005-autotools-dev_20220109.1_all.deb ... 240s Unpacking autotools-dev (20220109.1) ... 240s Selecting previously unselected package automake. 240s Preparing to unpack .../006-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 240s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 240s Selecting previously unselected package autopoint. 240s Preparing to unpack .../007-autopoint_0.22.5-2_all.deb ... 240s Unpacking autopoint (0.22.5-2) ... 240s Selecting previously unselected package libisl23:amd64. 240s Preparing to unpack .../008-libisl23_0.27-1_amd64.deb ... 240s Unpacking libisl23:amd64 (0.27-1) ... 240s Selecting previously unselected package libmpc3:amd64. 240s Preparing to unpack .../009-libmpc3_1.3.1-1build2_amd64.deb ... 240s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 240s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 240s Preparing to unpack .../010-cpp-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 240s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 240s Selecting previously unselected package cpp-14. 240s Preparing to unpack .../011-cpp-14_14.2.0-8ubuntu1_amd64.deb ... 240s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 240s Selecting previously unselected package cpp-x86-64-linux-gnu. 240s Preparing to unpack .../012-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 240s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 240s Selecting previously unselected package cpp. 240s Preparing to unpack .../013-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ... 240s Unpacking cpp (4:14.1.0-2ubuntu1) ... 240s Selecting previously unselected package libcc1-0:amd64. 240s Preparing to unpack .../014-libcc1-0_14.2.0-8ubuntu1_amd64.deb ... 240s Unpacking libcc1-0:amd64 (14.2.0-8ubuntu1) ... 240s Selecting previously unselected package libgomp1:amd64. 240s Preparing to unpack .../015-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 240s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 240s Selecting previously unselected package libitm1:amd64. 240s Preparing to unpack .../016-libitm1_14.2.0-8ubuntu1_amd64.deb ... 240s Unpacking libitm1:amd64 (14.2.0-8ubuntu1) ... 240s Selecting previously unselected package libasan8:amd64. 240s Preparing to unpack .../017-libasan8_14.2.0-8ubuntu1_amd64.deb ... 240s Unpacking libasan8:amd64 (14.2.0-8ubuntu1) ... 240s Selecting previously unselected package liblsan0:amd64. 240s Preparing to unpack .../018-liblsan0_14.2.0-8ubuntu1_amd64.deb ... 240s Unpacking liblsan0:amd64 (14.2.0-8ubuntu1) ... 240s Selecting previously unselected package libtsan2:amd64. 240s Preparing to unpack .../019-libtsan2_14.2.0-8ubuntu1_amd64.deb ... 240s Unpacking libtsan2:amd64 (14.2.0-8ubuntu1) ... 240s Selecting previously unselected package libubsan1:amd64. 240s Preparing to unpack .../020-libubsan1_14.2.0-8ubuntu1_amd64.deb ... 240s Unpacking libubsan1:amd64 (14.2.0-8ubuntu1) ... 240s Selecting previously unselected package libhwasan0:amd64. 240s Preparing to unpack .../021-libhwasan0_14.2.0-8ubuntu1_amd64.deb ... 240s Unpacking libhwasan0:amd64 (14.2.0-8ubuntu1) ... 240s Selecting previously unselected package libquadmath0:amd64. 240s Preparing to unpack .../022-libquadmath0_14.2.0-8ubuntu1_amd64.deb ... 240s Unpacking libquadmath0:amd64 (14.2.0-8ubuntu1) ... 240s Selecting previously unselected package libgcc-14-dev:amd64. 240s Preparing to unpack .../023-libgcc-14-dev_14.2.0-8ubuntu1_amd64.deb ... 240s Unpacking libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 241s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 241s Preparing to unpack .../024-gcc-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 241s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 241s Selecting previously unselected package gcc-14. 241s Preparing to unpack .../025-gcc-14_14.2.0-8ubuntu1_amd64.deb ... 241s Unpacking gcc-14 (14.2.0-8ubuntu1) ... 241s Selecting previously unselected package gcc-x86-64-linux-gnu. 241s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 241s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 241s Selecting previously unselected package gcc. 241s Preparing to unpack .../027-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ... 241s Unpacking gcc (4:14.1.0-2ubuntu1) ... 241s Selecting previously unselected package libstdc++-14-dev:amd64. 241s Preparing to unpack .../028-libstdc++-14-dev_14.2.0-8ubuntu1_amd64.deb ... 241s Unpacking libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 241s Selecting previously unselected package g++-14-x86-64-linux-gnu. 241s Preparing to unpack .../029-g++-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 241s Unpacking g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 241s Selecting previously unselected package g++-14. 241s Preparing to unpack .../030-g++-14_14.2.0-8ubuntu1_amd64.deb ... 241s Unpacking g++-14 (14.2.0-8ubuntu1) ... 241s Selecting previously unselected package g++-x86-64-linux-gnu. 241s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 241s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 241s Selecting previously unselected package g++. 241s Preparing to unpack .../032-g++_4%3a14.1.0-2ubuntu1_amd64.deb ... 241s Unpacking g++ (4:14.1.0-2ubuntu1) ... 241s Selecting previously unselected package build-essential. 241s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ... 241s Unpacking build-essential (12.10ubuntu1) ... 241s Selecting previously unselected package libdebhelper-perl. 241s Preparing to unpack .../034-libdebhelper-perl_13.20ubuntu1_all.deb ... 241s Unpacking libdebhelper-perl (13.20ubuntu1) ... 241s Selecting previously unselected package libtool. 241s Preparing to unpack .../035-libtool_2.4.7-8_all.deb ... 241s Unpacking libtool (2.4.7-8) ... 242s Selecting previously unselected package dh-autoreconf. 242s Preparing to unpack .../036-dh-autoreconf_20_all.deb ... 242s Unpacking dh-autoreconf (20) ... 242s Selecting previously unselected package libarchive-zip-perl. 242s Preparing to unpack .../037-libarchive-zip-perl_1.68-1_all.deb ... 242s Unpacking libarchive-zip-perl (1.68-1) ... 242s Selecting previously unselected package libfile-stripnondeterminism-perl. 242s Preparing to unpack .../038-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... 242s Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... 242s Selecting previously unselected package dh-strip-nondeterminism. 242s Preparing to unpack .../039-dh-strip-nondeterminism_1.14.0-1_all.deb ... 242s Unpacking dh-strip-nondeterminism (1.14.0-1) ... 242s Selecting previously unselected package debugedit. 242s Preparing to unpack .../040-debugedit_1%3a5.1-1_amd64.deb ... 242s Unpacking debugedit (1:5.1-1) ... 242s Selecting previously unselected package dwz. 242s Preparing to unpack .../041-dwz_0.15-1build6_amd64.deb ... 242s Unpacking dwz (0.15-1build6) ... 242s Selecting previously unselected package gettext. 242s Preparing to unpack .../042-gettext_0.22.5-2_amd64.deb ... 242s Unpacking gettext (0.22.5-2) ... 242s Selecting previously unselected package intltool-debian. 242s Preparing to unpack .../043-intltool-debian_0.35.0+20060710.6_all.deb ... 242s Unpacking intltool-debian (0.35.0+20060710.6) ... 242s Selecting previously unselected package po-debconf. 242s Preparing to unpack .../044-po-debconf_1.0.21+nmu1_all.deb ... 242s Unpacking po-debconf (1.0.21+nmu1) ... 242s Selecting previously unselected package debhelper. 242s Preparing to unpack .../045-debhelper_13.20ubuntu1_all.deb ... 242s Unpacking debhelper (13.20ubuntu1) ... 242s Selecting previously unselected package dh-python. 242s Preparing to unpack .../046-dh-python_6.20241024_all.deb ... 242s Unpacking dh-python (6.20241024) ... 242s Selecting previously unselected package xml-core. 242s Preparing to unpack .../047-xml-core_0.19_all.deb ... 242s Unpacking xml-core (0.19) ... 242s Selecting previously unselected package docutils-common. 242s Preparing to unpack .../048-docutils-common_0.21.2+dfsg-2_all.deb ... 242s Unpacking docutils-common (0.21.2+dfsg-2) ... 242s Selecting previously unselected package libaec0:amd64. 242s Preparing to unpack .../049-libaec0_1.1.3-1_amd64.deb ... 242s Unpacking libaec0:amd64 (1.1.3-1) ... 242s Selecting previously unselected package libblas3:amd64. 242s Preparing to unpack .../050-libblas3_3.12.0-3build2_amd64.deb ... 242s Unpacking libblas3:amd64 (3.12.0-3build2) ... 242s Selecting previously unselected package libsnappy1v5:amd64. 242s Preparing to unpack .../051-libsnappy1v5_1.2.1-1_amd64.deb ... 242s Unpacking libsnappy1v5:amd64 (1.2.1-1) ... 242s Selecting previously unselected package libblosc1:amd64. 242s Preparing to unpack .../052-libblosc1_1.21.5+ds-1build1_amd64.deb ... 242s Unpacking libblosc1:amd64 (1.21.5+ds-1build1) ... 242s Selecting previously unselected package libgfortran5:amd64. 242s Preparing to unpack .../053-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 242s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 242s Selecting previously unselected package libsz2:amd64. 242s Preparing to unpack .../054-libsz2_1.1.3-1_amd64.deb ... 242s Unpacking libsz2:amd64 (1.1.3-1) ... 242s Selecting previously unselected package libhdf5-103-1t64:amd64. 242s Preparing to unpack .../055-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ... 242s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 242s Selecting previously unselected package libhdf5-hl-100t64:amd64. 242s Preparing to unpack .../056-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_amd64.deb ... 242s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 242s Selecting previously unselected package libjs-jquery. 242s Preparing to unpack .../057-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 242s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 242s Selecting previously unselected package libjs-underscore. 242s Preparing to unpack .../058-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 242s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 242s Selecting previously unselected package libjs-sphinxdoc. 242s Preparing to unpack .../059-libjs-sphinxdoc_7.4.7-4_all.deb ... 242s Unpacking libjs-sphinxdoc (7.4.7-4) ... 242s Selecting previously unselected package libjson-perl. 242s Preparing to unpack .../060-libjson-perl_4.10000-1_all.deb ... 242s Unpacking libjson-perl (4.10000-1) ... 242s Selecting previously unselected package liblapack3:amd64. 242s Preparing to unpack .../061-liblapack3_3.12.0-3build2_amd64.deb ... 242s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 243s Selecting previously unselected package liblzf1:amd64. 243s Preparing to unpack .../062-liblzf1_3.6-4_amd64.deb ... 243s Unpacking liblzf1:amd64 (3.6-4) ... 243s Selecting previously unselected package libpython3.13-stdlib:amd64. 243s Preparing to unpack .../063-libpython3.13-stdlib_3.13.0-2_amd64.deb ... 243s Unpacking libpython3.13-stdlib:amd64 (3.13.0-2) ... 243s Selecting previously unselected package pybuild-plugin-autopkgtest. 243s Preparing to unpack .../064-pybuild-plugin-autopkgtest_6.20241024_all.deb ... 243s Unpacking pybuild-plugin-autopkgtest (6.20241024) ... 243s Selecting previously unselected package python3-packaging. 243s Preparing to unpack .../065-python3-packaging_24.2-1_all.deb ... 243s Unpacking python3-packaging (24.2-1) ... 243s Selecting previously unselected package python3-pyproject-hooks. 243s Preparing to unpack .../066-python3-pyproject-hooks_1.2.0-1_all.deb ... 243s Unpacking python3-pyproject-hooks (1.2.0-1) ... 243s Selecting previously unselected package python3-toml. 243s Preparing to unpack .../067-python3-toml_0.10.2-1_all.deb ... 243s Unpacking python3-toml (0.10.2-1) ... 243s Selecting previously unselected package python3-wheel. 243s Preparing to unpack .../068-python3-wheel_0.45.0-1_all.deb ... 243s Unpacking python3-wheel (0.45.0-1) ... 243s Selecting previously unselected package python3-build. 243s Preparing to unpack .../069-python3-build_1.2.2-1_all.deb ... 243s Unpacking python3-build (1.2.2-1) ... 243s Selecting previously unselected package python3-installer. 243s Preparing to unpack .../070-python3-installer_0.7.0+dfsg1-3_all.deb ... 243s Unpacking python3-installer (0.7.0+dfsg1-3) ... 243s Selecting previously unselected package pybuild-plugin-pyproject. 243s Preparing to unpack .../071-pybuild-plugin-pyproject_6.20241024_all.deb ... 243s Unpacking pybuild-plugin-pyproject (6.20241024) ... 243s Selecting previously unselected package python3.13. 243s Preparing to unpack .../072-python3.13_3.13.0-2_amd64.deb ... 243s Unpacking python3.13 (3.13.0-2) ... 243s Selecting previously unselected package python3-all. 243s Preparing to unpack .../073-python3-all_3.12.7-1_amd64.deb ... 243s Unpacking python3-all (3.12.7-1) ... 243s Selecting previously unselected package python3-asciitree. 243s Preparing to unpack .../074-python3-asciitree_0.3.3-4_all.deb ... 243s Unpacking python3-asciitree (0.3.3-4) ... 243s Selecting previously unselected package python3-soupsieve. 243s Preparing to unpack .../075-python3-soupsieve_2.6-1_all.deb ... 243s Unpacking python3-soupsieve (2.6-1) ... 243s Selecting previously unselected package python3-bs4. 243s Preparing to unpack .../076-python3-bs4_4.12.3-3_all.deb ... 243s Unpacking python3-bs4 (4.12.3-3) ... 243s Selecting previously unselected package python3-defusedxml. 243s Preparing to unpack .../077-python3-defusedxml_0.7.1-2_all.deb ... 243s Unpacking python3-defusedxml (0.7.1-2) ... 243s Selecting previously unselected package python3-roman. 243s Preparing to unpack .../078-python3-roman_4.2-1_all.deb ... 243s Unpacking python3-roman (4.2-1) ... 243s Selecting previously unselected package python3-docutils. 243s Preparing to unpack .../079-python3-docutils_0.21.2+dfsg-2_all.deb ... 243s Unpacking python3-docutils (0.21.2+dfsg-2) ... 243s Selecting previously unselected package python3-monotonic. 243s Preparing to unpack .../080-python3-monotonic_1.6-2_all.deb ... 243s Unpacking python3-monotonic (1.6-2) ... 243s Selecting previously unselected package python3-fasteners. 243s Preparing to unpack .../081-python3-fasteners_0.18-2_all.deb ... 243s Unpacking python3-fasteners (0.18-2) ... 243s Selecting previously unselected package python3-fsspec. 243s Preparing to unpack .../082-python3-fsspec_2024.9.0-1_all.deb ... 243s Unpacking python3-fsspec (2024.9.0-1) ... 243s Selecting previously unselected package python3-numpy. 243s Preparing to unpack .../083-python3-numpy_1%3a1.26.4+ds-11ubuntu1_amd64.deb ... 243s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 244s Selecting previously unselected package python3-h5py-serial. 244s Preparing to unpack .../084-python3-h5py-serial_3.11.0-5ubuntu1_amd64.deb ... 244s Unpacking python3-h5py-serial (3.11.0-5ubuntu1) ... 244s Selecting previously unselected package python3-h5py. 244s Preparing to unpack .../085-python3-h5py_3.11.0-5ubuntu1_all.deb ... 244s Unpacking python3-h5py (3.11.0-5ubuntu1) ... 244s Selecting previously unselected package python3-imagesize. 244s Preparing to unpack .../086-python3-imagesize_1.4.1-1_all.deb ... 244s Unpacking python3-imagesize (1.4.1-1) ... 244s Selecting previously unselected package python3-iniconfig. 244s Preparing to unpack .../087-python3-iniconfig_1.1.1-2_all.deb ... 244s Unpacking python3-iniconfig (1.1.1-2) ... 244s Selecting previously unselected package python3-msgpack. 244s Preparing to unpack .../088-python3-msgpack_1.0.3-3build3_amd64.deb ... 244s Unpacking python3-msgpack (1.0.3-3build3) ... 244s Selecting previously unselected package sphinx-common. 244s Preparing to unpack .../089-sphinx-common_7.4.7-4_all.deb ... 244s Unpacking sphinx-common (7.4.7-4) ... 244s Selecting previously unselected package python3-alabaster. 244s Preparing to unpack .../090-python3-alabaster_0.7.16-0.1_all.deb ... 244s Unpacking python3-alabaster (0.7.16-0.1) ... 244s Selecting previously unselected package python3-snowballstemmer. 244s Preparing to unpack .../091-python3-snowballstemmer_2.2.0-4build1_all.deb ... 244s Unpacking python3-snowballstemmer (2.2.0-4build1) ... 244s Selecting previously unselected package python3-sphinx. 244s Preparing to unpack .../092-python3-sphinx_7.4.7-4_all.deb ... 244s Unpacking python3-sphinx (7.4.7-4) ... 244s Selecting previously unselected package python3-pydata-sphinx-theme. 244s Preparing to unpack .../093-python3-pydata-sphinx-theme_0.15.4+dfsg-2_all.deb ... 244s Unpacking python3-pydata-sphinx-theme (0.15.4+dfsg-2) ... 244s Selecting previously unselected package 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.../104-python3-sphinx-design_0.6.1-1_all.deb ... 244s Unpacking python3-sphinx-design (0.6.1-1) ... 245s Selecting previously unselected package python3-sphinx-issues. 245s Preparing to unpack .../105-python3-sphinx-issues_5.0.0-1_all.deb ... 245s Unpacking python3-sphinx-issues (5.0.0-1) ... 245s Selecting previously unselected package python3-zarr. 245s Preparing to unpack .../106-python3-zarr_2.18.3+ds-1_all.deb ... 245s Unpacking python3-zarr (2.18.3+ds-1) ... 245s Selecting previously unselected package autopkgtest-satdep. 245s Preparing to unpack .../107-1-autopkgtest-satdep.deb ... 245s Unpacking autopkgtest-satdep (0) ... 245s Setting up dh-python (6.20241024) ... 245s Setting up python3-iniconfig (1.1.1-2) ... 245s Setting up python3-defusedxml (0.7.1-2) ... 245s Setting up libarchive-zip-perl (1.68-1) ... 245s Setting up python3-alabaster (0.7.16-0.1) ... 245s Setting up libdebhelper-perl (13.20ubuntu1) ... 245s Setting up python3-fsspec (2024.9.0-1) ... 246s Setting up python3-tabulate (0.9.0-1) ... 246s Setting up m4 (1.4.19-4build1) ... 246s Setting up libgomp1:amd64 (14.2.0-8ubuntu1) ... 246s Setting up python3-wheel (0.45.0-1) ... 246s Setting up libaec0:amd64 (1.1.3-1) ... 246s Setting up libsnappy1v5:amd64 (1.2.1-1) ... 246s Setting up python3-monotonic (1.6-2) ... 246s Setting up libpython3.13-minimal:amd64 (3.13.0-2) ... 247s Setting up python3-roman (4.2-1) ... 247s Setting up autotools-dev (20220109.1) ... 247s Setting up libblas3:amd64 (3.12.0-3build2) ... 247s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 247s Setting up python3-packaging (24.2-1) ... 247s Setting up python3-pyproject-hooks (1.2.0-1) ... 247s Setting up python3-snowballstemmer (2.2.0-4build1) ... 247s Setting up liblzf1:amd64 (3.6-4) ... 247s Setting up libquadmath0:amd64 (14.2.0-8ubuntu1) ... 247s Setting up libmpc3:amd64 (1.3.1-1build2) ... 247s Setting up autopoint (0.22.5-2) ... 247s Setting up python3-fasteners (0.18-2) ... 248s Setting up python3-asciitree (0.3.3-4) ... 248s Setting up python3-toml (0.10.2-1) ... 248s Setting up python3-installer (0.7.0+dfsg1-3) ... 248s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ... 248s Setting up autoconf (2.72-3) ... 248s Setting up python3-pluggy (1.5.0-1) ... 248s Setting up libubsan1:amd64 (14.2.0-8ubuntu1) ... 248s Setting up dwz (0.15-1build6) ... 248s Setting up libhwasan0:amd64 (14.2.0-8ubuntu1) ... 248s Setting up libasan8:amd64 (14.2.0-8ubuntu1) ... 248s Setting up libjson-perl (4.10000-1) ... 248s Setting up libblosc1:amd64 (1.21.5+ds-1build1) ... 248s Setting up debugedit (1:5.1-1) ... 248s Setting up python3.13-minimal (3.13.0-2) ... 249s Setting up sgml-base (1.31) ... 249s Setting up python3-msgpack (1.0.3-3build3) ... 249s Setting up libtsan2:amd64 (14.2.0-8ubuntu1) ... 249s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 249s Setting up libisl23:amd64 (0.27-1) ... 249s Setting up python3-build (1.2.2-1) ... 249s Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ... 249s Setting up python3-soupsieve (2.6-1) ... 250s Setting up libcc1-0:amd64 (14.2.0-8ubuntu1) ... 250s Setting up liblsan0:amd64 (14.2.0-8ubuntu1) ... 250s Setting up libsz2:amd64 (1.1.3-1) ... 250s Setting up libitm1:amd64 (14.2.0-8ubuntu1) ... 250s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 250s Setting up python3-imagesize (1.4.1-1) ... 250s Setting up automake (1:1.16.5-1.3ubuntu1) ... 250s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode 250s Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... 250s Setting up liblapack3:amd64 (3.12.0-3build2) ... 250s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 250s Setting up gettext (0.22.5-2) ... 250s Setting up python3.13 (3.13.0-2) ... 251s Setting up pybuild-plugin-pyproject (6.20241024) ... 251s Setting up python3-pytest (8.3.3-1) ... 251s Setting up python3-all (3.12.7-1) ... 251s Setting up python3-setuptools-scm (8.1.0-1) ... 251s Setting up python3-bs4 (4.12.3-3) ... 252s Setting up intltool-debian (0.35.0+20060710.6) ... 252s Setting up cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 252s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ... 254s Setting up libjs-sphinxdoc (7.4.7-4) ... 254s Setting up cpp-14 (14.2.0-8ubuntu1) ... 254s Setting up python3-pytest-doctestplus (1.2.1-2) ... 254s Setting up dh-strip-nondeterminism (1.14.0-1) ... 254s Setting up xml-core (0.19) ... 255s Setting up libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 255s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 255s Setting up libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 255s Setting up cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 255s Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 255s Setting up python3-pytest-timeout (2.3.1-1) ... 255s Setting up po-debconf (1.0.21+nmu1) ... 255s Setting up python3-h5py-serial (3.11.0-5ubuntu1) ... 255s Setting up sphinx-common (7.4.7-4) ... 255s Setting up python3-h5py (3.11.0-5ubuntu1) ... 255s Setting up cpp (4:14.1.0-2ubuntu1) ... 255s Setting up gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 255s Setting up gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 255s Setting up gcc-14 (14.2.0-8ubuntu1) ... 255s Setting up g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 255s Setting up g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 255s Setting up g++-14 (14.2.0-8ubuntu1) ... 255s Setting up libtool (2.4.7-8) ... 255s Setting up gcc (4:14.1.0-2ubuntu1) ... 255s Setting up dh-autoreconf (20) ... 255s Setting up g++ (4:14.1.0-2ubuntu1) ... 255s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 255s Setting up build-essential (12.10ubuntu1) ... 255s Setting up debhelper (13.20ubuntu1) ... 255s Setting up pybuild-plugin-autopkgtest (6.20241024) ... 255s Processing triggers for libc-bin (2.40-1ubuntu3) ... 255s Processing triggers for systemd (256.5-2ubuntu4) ... 255s Processing triggers for man-db (2.13.0-1) ... 257s Processing triggers for install-info (7.1.1-1) ... 257s Processing triggers for sgml-base (1.31) ... 257s Setting up docutils-common (0.21.2+dfsg-2) ... 257s Processing triggers for sgml-base (1.31) ... 257s Setting up python3-docutils (0.21.2+dfsg-2) ... 258s Setting up python3-sphinx (7.4.7-4) ... 259s Setting up python3-sphinx-copybutton (0.5.2-2) ... 259s Setting up python3-sphinx-issues (5.0.0-1) ... 259s Setting up python3-sphinx-design (0.6.1-1) ... 259s Setting up python3-numpydoc (1.6.0-2) ... 260s Setting up python3-pydata-sphinx-theme (0.15.4+dfsg-2) ... 260s Setting up python3-sphinx-automodapi (0.18.0-1) ... 260s Setting up python3-numcodecs (0.14.1+ds-1) ... 260s Setting up python3-zarr (2.18.3+ds-1) ... 261s Setting up autopkgtest-satdep (0) ... 265s (Reading database ... 82597 files and directories currently installed.) 265s Removing autopkgtest-satdep (0) ... 265s autopkgtest [20:34:52]: test pybuild-autopkgtest: pybuild-autopkgtest 265s autopkgtest [20:34:52]: test pybuild-autopkgtest: [----------------------- 266s pybuild-autopkgtest 267s I: pybuild base:311: cd /tmp/autopkgtest.BOLBJA/autopkgtest_tmp/build; python3.13 -m pytest -k "not test_hierarchy and not test_utf8_encoding and not [static_flat] and not [static_nested] and not [static_flat_legacy] and not [static_nested_legacy] and not test_meta_prefix_6853 and not test_complex and not test_encode_decode_array_dtype_shape_v3" --pyargs zarr 269s ============================= test session starts ============================== 269s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 269s rootdir: /tmp/autopkgtest.BOLBJA/autopkgtest_tmp/build 269s configfile: pyproject.toml 269s plugins: timeout-2.3.1, doctestplus-1.2.1, typeguard-4.4.1 269s collected 5174 items / 768 deselected 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[100%] 318s 318s ==================================== ERRORS ==================================== 318s ____________ ERROR at setup of TestCopy.test_copy_array[zarr-hdf5] _____________ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_zarr_hdf5_0') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def dest(self, request, tmpdir): 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 318s ____________ ERROR at setup of TestCopy.test_copy_array[hdf5-zarr] _____________ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_hdf5_zarr_0') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s ____________ ERROR at setup of TestCopy.test_copy_array[hdf5-hdf5] _____________ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_hdf5_hdf5_0') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s ___________ ERROR at setup of TestCopy.test_copy_bad_dest[zarr-hdf5] ___________ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_bad_dest_zarr_hdf5_0') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def dest(self, request, tmpdir): 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 318s ___________ ERROR at setup of TestCopy.test_copy_bad_dest[hdf5-zarr] ___________ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_bad_dest_hdf5_zarr_0') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s ___________ ERROR at setup of TestCopy.test_copy_bad_dest[hdf5-hdf5] ___________ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_bad_dest_hdf5_hdf5_0') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s __________ ERROR at setup of TestCopy.test_copy_array_name[zarr-hdf5] __________ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_name_zarr_hdf50') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def dest(self, request, tmpdir): 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 318s __________ ERROR at setup of TestCopy.test_copy_array_name[hdf5-zarr] __________ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_name_hdf5_zarr0') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s __________ ERROR at setup of TestCopy.test_copy_array_name[hdf5-hdf5] __________ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_name_hdf5_hdf50') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s _____ ERROR at setup of TestCopy.test_copy_array_create_options[zarr-hdf5] _____ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_create_options1') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def dest(self, request, tmpdir): 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 318s _____ ERROR at setup of TestCopy.test_copy_array_create_options[hdf5-zarr] _____ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_create_options2') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s _____ ERROR at setup of TestCopy.test_copy_array_create_options[hdf5-hdf5] _____ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_create_options3') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s ______ ERROR at setup of TestCopy.test_copy_array_exists_array[zarr-hdf5] ______ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_array_z1') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def dest(self, request, tmpdir): 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 318s ______ ERROR at setup of TestCopy.test_copy_array_exists_array[hdf5-zarr] ______ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_array_h0') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s ______ ERROR at setup of TestCopy.test_copy_array_exists_array[hdf5-hdf5] ______ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_array_h1') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s ______ ERROR at setup of TestCopy.test_copy_array_exists_group[zarr-hdf5] ______ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_group_z1') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def dest(self, request, tmpdir): 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 318s ______ ERROR at setup of TestCopy.test_copy_array_exists_group[hdf5-zarr] ______ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_group_h0') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s ______ ERROR at setup of TestCopy.test_copy_array_exists_group[hdf5-hdf5] ______ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_group_h1') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s ____ ERROR at setup of TestCopy.test_copy_array_skip_initialized[zarr-hdf5] ____ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_skip_initializ1') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def dest(self, request, tmpdir): 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 318s ____ ERROR at setup of TestCopy.test_copy_array_skip_initialized[hdf5-zarr] ____ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_skip_initializ2') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s ____ ERROR at setup of TestCopy.test_copy_array_skip_initialized[hdf5-hdf5] ____ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_skip_initializ3') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s ____________ ERROR at setup of TestCopy.test_copy_group[zarr-hdf5] _____________ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_zarr_hdf5_0') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def dest(self, request, tmpdir): 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 318s ____________ ERROR at setup of TestCopy.test_copy_group[hdf5-zarr] _____________ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_hdf5_zarr_0') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s ____________ ERROR at setup of TestCopy.test_copy_group[hdf5-hdf5] _____________ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_hdf5_hdf5_0') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s ________ ERROR at setup of TestCopy.test_copy_group_no_name[zarr-hdf5] _________ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_no_name_zarr_h0') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def dest(self, request, tmpdir): 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 318s ________ ERROR at setup of TestCopy.test_copy_group_no_name[hdf5-zarr] _________ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_no_name_hdf5_z0') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s ________ ERROR at setup of TestCopy.test_copy_group_no_name[hdf5-hdf5] _________ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_no_name_hdf5_h0') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s ________ ERROR at setup of TestCopy.test_copy_group_options[zarr-hdf5] _________ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_options_zarr_h0') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def dest(self, request, tmpdir): 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 318s ________ ERROR at setup of TestCopy.test_copy_group_options[hdf5-zarr] _________ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_options_hdf5_z0') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s ________ ERROR at setup of TestCopy.test_copy_group_options[hdf5-hdf5] _________ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_options_hdf5_h0') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s ________ ERROR at setup of TestCopy.test_copy_group_shallow[zarr-hdf5] _________ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_shallow_zarr_h0') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def dest(self, request, tmpdir): 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 318s ________ ERROR at setup of TestCopy.test_copy_group_shallow[hdf5-zarr] _________ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_shallow_hdf5_z0') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s ________ ERROR at setup of TestCopy.test_copy_group_shallow[hdf5-hdf5] _________ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_shallow_hdf5_h0') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s ______ ERROR at setup of TestCopy.test_copy_group_exists_group[zarr-hdf5] ______ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_group_z1') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def dest(self, request, tmpdir): 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 318s ______ ERROR at setup of TestCopy.test_copy_group_exists_group[hdf5-zarr] ______ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_group_h0') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s ______ ERROR at setup of TestCopy.test_copy_group_exists_group[hdf5-hdf5] ______ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_group_h1') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s ______ ERROR at setup of TestCopy.test_copy_group_exists_array[zarr-hdf5] ______ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_array_z1') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def dest(self, request, tmpdir): 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 318s ______ ERROR at setup of TestCopy.test_copy_group_exists_array[hdf5-zarr] ______ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_array_h0') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s ______ ERROR at setup of TestCopy.test_copy_group_exists_array[hdf5-hdf5] ______ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_array_h1') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s ________ ERROR at setup of TestCopy.test_copy_group_dry_run[zarr-hdf5] _________ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_dry_run_zarr_h0') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def dest(self, request, tmpdir): 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 318s ________ ERROR at setup of TestCopy.test_copy_group_dry_run[hdf5-zarr] _________ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_dry_run_hdf5_z0') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s ________ ERROR at setup of TestCopy.test_copy_group_dry_run[hdf5-hdf5] _________ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_dry_run_hdf5_h0') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s ______________ ERROR at setup of TestCopy.test_logging[zarr-hdf5] ______________ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_logging_zarr_hdf5_0') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def dest(self, request, tmpdir): 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 318s ______________ ERROR at setup of TestCopy.test_logging[hdf5-zarr] ______________ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_logging_hdf5_zarr_0') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s ______________ ERROR at setup of TestCopy.test_logging[hdf5-hdf5] ______________ 318s 318s self = 318s request = > 318s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_logging_hdf5_hdf5_0') 318s 318s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 318s def source(self, request, tmpdir): 318s def prep_source(source): 318s foo = source.create_group("foo") 318s foo.attrs["experiment"] = "weird science" 318s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 318s baz.attrs["units"] = "metres" 318s if request.param: 318s extra_kws = dict( 318s compression="gzip", 318s compression_opts=3, 318s fillvalue=84, 318s shuffle=True, 318s fletcher32=True, 318s ) 318s else: 318s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 318s source.create_dataset( 318s "spam", 318s data=np.arange(100, 200).reshape(20, 5), 318s chunks=(10, 2), 318s dtype="i2", 318s **extra_kws, 318s ) 318s return source 318s 318s if request.param: 318s > h5py = pytest.importorskip("h5py") 318s E pytest.PytestDeprecationWarning: 318s E Module 'h5py' was found, but when imported by pytest it raised: 318s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 318s E In pytest 9.1 this warning will become an error by default. 318s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 318s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 318s =================================== FAILURES =================================== 318s _________________________ test_array_with_delta_filter _________________________ 318s 318s def test_array_with_delta_filter(): 318s # setup 318s astype = "u1" 318s dtype = "i8" 318s filters = [Delta(astype=astype, dtype=dtype)] 318s data = np.arange(100, dtype=dtype) 318s 318s for compressor in compressors: 318s > a = array(data, chunks=10, compressor=compressor, filters=filters) 318s 318s /usr/lib/python3/dist-packages/zarr/tests/test_filters.py:40: 318s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 318s /usr/lib/python3/dist-packages/zarr/creation.py:444: in array 318s z[...] = data 318s /usr/lib/python3/dist-packages/zarr/core.py:1449: in __setitem__ 318s self.set_basic_selection(pure_selection, value, fields=fields) 318s /usr/lib/python3/dist-packages/zarr/core.py:1545: in set_basic_selection 318s return self._set_basic_selection_nd(selection, value, fields=fields) 318s /usr/lib/python3/dist-packages/zarr/core.py:1935: in _set_basic_selection_nd 318s self._set_selection(indexer, value, fields=fields) 318s /usr/lib/python3/dist-packages/zarr/core.py:1988: in _set_selection 318s self._chunk_setitem(chunk_coords, chunk_selection, chunk_value, fields=fields) 318s /usr/lib/python3/dist-packages/zarr/core.py:2261: in _chunk_setitem 318s self._chunk_setitem_nosync(chunk_coords, chunk_selection, value, fields=fields) 318s /usr/lib/python3/dist-packages/zarr/core.py:2271: in _chunk_setitem_nosync 318s self.chunk_store[ckey] = self._encode_chunk(cdata) 318s /usr/lib/python3/dist-packages/zarr/core.py:2387: in _encode_chunk 318s chunk = f.encode(chunk) 318s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 318s 318s self = Delta(dtype=' np.subtract(arr[1:], arr[:-1], out=enc[1:]) 318s E numpy.core._exceptions._UFuncOutputCastingError: Cannot cast ufunc 'subtract' output from dtype('int64') to dtype('uint8') with casting rule 'same_kind' 318s 318s /usr/lib/python3/dist-packages/numcodecs/delta.py:70: UFuncTypeError 318s =============================== warnings summary =============================== 318s tests/test_core.py::TestArrayWithDBMStore::test_array_1d 318s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 318s 318s Traceback (most recent call last): 318s File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 355, in 318s chunk_coords = tuple(p.dim_chunk_ix for p in dim_projections) 318s 318s ResourceWarning: unclosed database in 318s 318s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 318s 318s tests/test_core.py::TestArrayWithDBMStore::test_object_arrays_danger 318s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 318s 318s Traceback (most recent call last): 318s File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 355, in 318s chunk_coords = tuple(p.dim_chunk_ix for p in dim_projections) 318s 318s ResourceWarning: unclosed database in 318s 318s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 318s 318s tests/test_core.py::TestArrayWithSQLiteStore::test_resize_2d 318s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 318s 318s Traceback (most recent call last): 318s File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 356, in 318s chunk_selection = tuple(p.dim_chunk_sel for p in dim_projections) 318s 318s ResourceWarning: unclosed database in 318s 318s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 318s 318s tests/test_core.py::TestArrayWithSQLiteStore::test_object_arrays_vlen_text 318s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 318s 318s Traceback (most recent call last): 318s File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 219, in __iter__ 318s dim_chunk_sel = slice(dim_chunk_sel_start, dim_chunk_sel_stop, self.step) 318s ResourceWarning: unclosed database in 318s 318s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 318s 318s tests/test_core.py::TestArrayWithNoCompressor::test_array_2d 318s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 318s 318s Traceback (most recent call last): 318s File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 357, in 318s out_selection = tuple( 318s 318s ResourceWarning: unclosed database in 318s 318s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 318s 318s tests/test_core.py::TestArrayWithBZ2Compressor::test_resize_2d 318s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 318s 318s Traceback (most recent call last): 318s File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 357, in 318s out_selection = tuple( 318s 318s ResourceWarning: unclosed database in 318s 318s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 318s 318s tests/test_storage.py::TestZipStore::test_store_and_retrieve_ndarray 318s /usr/lib/python3.13/zipfile/__init__.py:1638: UserWarning: Duplicate name: 'foo' 318s return self._open_to_write(zinfo, force_zip64=force_zip64) 318s 318s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_setitem 318s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_setitem 318s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_append 318s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_append 318s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_create_group 318s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_create_group 318s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_require_group 318s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_require_group 318s /usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: This process (pid=3053) is multi-threaded, use of fork() may lead to deadlocks in the child. 318s self.pid = os.fork() 318s 318s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 318s ============================= slowest 10 durations ============================= 318s 4.45s call tests/test_indexing.py::test_set_orthogonal_selection_3d 318s 1.61s call tests/test_storage.py::test_format_compatibility 318s 1.39s call tests/test_core.py::TestArrayWithFSStorePartialRead::test_non_cont 318s 0.75s call tests/test_core.py::TestArrayWithSQLiteStore::test_islice 318s 0.73s call tests/test_indexing.py::test_set_orthogonal_selection_2d 318s 0.72s call tests/test_core.py::TestArrayWithSQLiteStore::test_iter 318s 0.53s call tests/test_core.py::TestArrayWithSQLiteStore::test_resize_2d 318s 0.53s call tests/test_core.py::TestArrayWithDBMStore::test_iter 318s 0.51s call tests/test_core.py::TestArrayWithCustomMapping::test_object_arrays_vlen_array 318s 0.51s call tests/test_core.py::TestArrayWithDBMStore::test_islice 318s =========================== short test summary info ============================ 318s FAILED tests/test_filters.py::test_array_with_delta_filter - numpy.core._exce... 318s ERROR tests/test_convenience.py::TestCopy::test_copy_array[zarr-hdf5] - pytes... 318s ERROR tests/test_convenience.py::TestCopy::test_copy_array[hdf5-zarr] - pytes... 318s ERROR tests/test_convenience.py::TestCopy::test_copy_array[hdf5-hdf5] - pytes... 318s ERROR tests/test_convenience.py::TestCopy::test_copy_bad_dest[zarr-hdf5] - py... 318s ERROR tests/test_convenience.py::TestCopy::test_copy_bad_dest[hdf5-zarr] - py... 318s ERROR tests/test_convenience.py::TestCopy::test_copy_bad_dest[hdf5-hdf5] - py... 318s ERROR tests/test_convenience.py::TestCopy::test_copy_array_name[zarr-hdf5] - ... 318s ERROR tests/test_convenience.py::TestCopy::test_copy_array_name[hdf5-zarr] - ... 318s ERROR tests/test_convenience.py::TestCopy::test_copy_array_name[hdf5-hdf5] - ... 318s ERROR tests/test_convenience.py::TestCopy::test_copy_array_create_options[zarr-hdf5] 318s ERROR tests/test_convenience.py::TestCopy::test_copy_array_create_options[hdf5-zarr] 318s ERROR tests/test_convenience.py::TestCopy::test_copy_array_create_options[hdf5-hdf5] 318s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_array[zarr-hdf5] 318s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_array[hdf5-zarr] 318s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_array[hdf5-hdf5] 318s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_group[zarr-hdf5] 318s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_group[hdf5-zarr] 318s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_group[hdf5-hdf5] 318s ERROR tests/test_convenience.py::TestCopy::test_copy_array_skip_initialized[zarr-hdf5] 318s ERROR tests/test_convenience.py::TestCopy::test_copy_array_skip_initialized[hdf5-zarr] 318s ERROR tests/test_convenience.py::TestCopy::test_copy_array_skip_initialized[hdf5-hdf5] 318s ERROR tests/test_convenience.py::TestCopy::test_copy_group[zarr-hdf5] - pytes... 318s ERROR tests/test_convenience.py::TestCopy::test_copy_group[hdf5-zarr] - pytes... 318s ERROR tests/test_convenience.py::TestCopy::test_copy_group[hdf5-hdf5] - pytes... 318s ERROR tests/test_convenience.py::TestCopy::test_copy_group_no_name[zarr-hdf5] 318s ERROR tests/test_convenience.py::TestCopy::test_copy_group_no_name[hdf5-zarr] 318s ERROR tests/test_convenience.py::TestCopy::test_copy_group_no_name[hdf5-hdf5] 318s ERROR tests/test_convenience.py::TestCopy::test_copy_group_options[zarr-hdf5] 318s ERROR tests/test_convenience.py::TestCopy::test_copy_group_options[hdf5-zarr] 318s ERROR tests/test_convenience.py::TestCopy::test_copy_group_options[hdf5-hdf5] 318s ERROR tests/test_convenience.py::TestCopy::test_copy_group_shallow[zarr-hdf5] 318s ERROR tests/test_convenience.py::TestCopy::test_copy_group_shallow[hdf5-zarr] 318s ERROR tests/test_convenience.py::TestCopy::test_copy_group_shallow[hdf5-hdf5] 318s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_group[zarr-hdf5] 318s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_group[hdf5-zarr] 318s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_group[hdf5-hdf5] 318s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_array[zarr-hdf5] 318s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_array[hdf5-zarr] 318s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_array[hdf5-hdf5] 318s ERROR tests/test_convenience.py::TestCopy::test_copy_group_dry_run[zarr-hdf5] 318s ERROR tests/test_convenience.py::TestCopy::test_copy_group_dry_run[hdf5-zarr] 318s ERROR tests/test_convenience.py::TestCopy::test_copy_group_dry_run[hdf5-hdf5] 318s ERROR tests/test_convenience.py::TestCopy::test_logging[zarr-hdf5] - pytest.P... 318s ERROR tests/test_convenience.py::TestCopy::test_logging[hdf5-zarr] - pytest.P... 318s ERROR tests/test_convenience.py::TestCopy::test_logging[hdf5-hdf5] - pytest.P... 318s = 1 failed, 2205 passed, 2151 skipped, 768 deselected, 4 xfailed, 15 warnings, 45 errors in 50.81s = 319s E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd /tmp/autopkgtest.BOLBJA/autopkgtest_tmp/build; python3.13 -m pytest -k "not test_hierarchy and not test_utf8_encoding and not [static_flat] and not [static_nested] and not [static_flat_legacy] and not [static_nested_legacy] and not test_meta_prefix_6853 and not test_complex and not test_encode_decode_array_dtype_shape_v3" --pyargs zarr 319s I: pybuild base:311: cd /tmp/autopkgtest.BOLBJA/autopkgtest_tmp/build; python3.12 -m pytest -k "not test_hierarchy and not test_utf8_encoding and not [static_flat] and not [static_nested] and not [static_flat_legacy] and not [static_nested_legacy] and not test_meta_prefix_6853 and not test_complex and not test_encode_decode_array_dtype_shape_v3" --pyargs zarr 321s ============================= test session starts ============================== 321s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 321s rootdir: /tmp/autopkgtest.BOLBJA/autopkgtest_tmp/build 321s configfile: pyproject.toml 321s plugins: timeout-2.3.1, doctestplus-1.2.1, typeguard-4.4.1 321s collected 5174 items / 768 deselected / 4406 selected 321s 322s tests/test_attrs.py .................. 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[100%] 364s 364s =================================== FAILURES =================================== 364s _________________________ test_array_with_delta_filter _________________________ 364s 364s def test_array_with_delta_filter(): 364s # setup 364s astype = "u1" 364s dtype = "i8" 364s filters = [Delta(astype=astype, dtype=dtype)] 364s data = np.arange(100, dtype=dtype) 364s 364s for compressor in compressors: 364s > a = array(data, chunks=10, compressor=compressor, filters=filters) 364s 364s /usr/lib/python3/dist-packages/zarr/tests/test_filters.py:40: 364s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 364s /usr/lib/python3/dist-packages/zarr/creation.py:444: in array 364s z[...] = data 364s /usr/lib/python3/dist-packages/zarr/core.py:1449: in __setitem__ 364s self.set_basic_selection(pure_selection, value, fields=fields) 364s /usr/lib/python3/dist-packages/zarr/core.py:1545: in set_basic_selection 364s return self._set_basic_selection_nd(selection, value, fields=fields) 364s /usr/lib/python3/dist-packages/zarr/core.py:1935: in _set_basic_selection_nd 364s self._set_selection(indexer, value, fields=fields) 364s /usr/lib/python3/dist-packages/zarr/core.py:1988: in _set_selection 364s self._chunk_setitem(chunk_coords, chunk_selection, chunk_value, fields=fields) 364s /usr/lib/python3/dist-packages/zarr/core.py:2261: in _chunk_setitem 364s self._chunk_setitem_nosync(chunk_coords, chunk_selection, value, fields=fields) 364s /usr/lib/python3/dist-packages/zarr/core.py:2271: in _chunk_setitem_nosync 364s self.chunk_store[ckey] = self._encode_chunk(cdata) 364s /usr/lib/python3/dist-packages/zarr/core.py:2387: in _encode_chunk 364s chunk = f.encode(chunk) 364s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 364s 364s self = Delta(dtype=' np.subtract(arr[1:], arr[:-1], out=enc[1:]) 364s E numpy.core._exceptions._UFuncOutputCastingError: Cannot cast ufunc 'subtract' output from dtype('int64') to dtype('uint8') with casting rule 'same_kind' 364s 364s /usr/lib/python3/dist-packages/numcodecs/delta.py:70: UFuncTypeError 364s =============================== warnings summary =============================== 364s tests/test_storage.py::TestZipStore::test_store_and_retrieve_ndarray 364s /usr/lib/python3.12/zipfile/__init__.py:1607: UserWarning: Duplicate name: 'foo' 364s return self._open_to_write(zinfo, force_zip64=force_zip64) 364s 364s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_setitem 364s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_setitem 364s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_append 364s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_append 364s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_create_group 364s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_create_group 364s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_require_group 364s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_require_group 364s /usr/lib/python3.12/multiprocessing/popen_fork.py:66: DeprecationWarning: This process (pid=3110) is multi-threaded, use of fork() may lead to deadlocks in the child. 364s self.pid = os.fork() 364s 364s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 364s ============================= slowest 10 durations ============================= 364s 4.73s call tests/test_indexing.py::test_set_orthogonal_selection_3d 364s 1.10s call tests/test_core.py::TestArrayWithFSStorePartialRead::test_non_cont 364s 0.79s call tests/test_indexing.py::test_set_orthogonal_selection_2d 364s 0.71s call tests/test_core.py::TestArrayWithSQLiteStore::test_iter 364s 0.68s call tests/test_core.py::TestArrayWithSQLiteStore::test_islice 364s 0.50s call tests/test_core.py::TestArrayWithSQLiteStore::test_resize_2d 364s 0.50s call tests/test_core.py::TestArrayWithSQLiteStore::test_array_order 364s 0.50s call tests/test_core.py::TestArrayWithSQLiteStore::test_append_2d_axis 364s 0.48s call tests/test_core.py::TestArrayWithFSStorePartialRead::test_array_2d 364s 0.48s call tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_non_cont 364s =========================== short test summary info ============================ 364s FAILED tests/test_filters.py::test_array_with_delta_filter - numpy.core._exce... 364s = 1 failed, 2250 passed, 2151 skipped, 768 deselected, 4 xfailed, 9 warnings in 44.44s = 366s E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd /tmp/autopkgtest.BOLBJA/autopkgtest_tmp/build; python3.12 -m pytest -k "not test_hierarchy and not test_utf8_encoding and not [static_flat] and not [static_nested] and not [static_flat_legacy] and not [static_nested_legacy] and not test_meta_prefix_6853 and not test_complex and not test_encode_decode_array_dtype_shape_v3" --pyargs zarr 366s pybuild-autopkgtest: error: pybuild --autopkgtest --test-pytest -i python{version} -p "3.13 3.12" returned exit code 13 366s make: *** [/tmp/6eaVsiPQPQ/run:4: pybuild-autopkgtest] Error 25 366s pybuild-autopkgtest: error: /tmp/6eaVsiPQPQ/run pybuild-autopkgtest returned exit code 2 366s autopkgtest [20:36:33]: test pybuild-autopkgtest: -----------------------] 367s pybuild-autopkgtest FAIL non-zero exit status 25 367s autopkgtest [20:36:34]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 367s autopkgtest [20:36:34]: @@@@@@@@@@@@@@@@@@@@ summary 367s pybuild-autopkgtest FAIL non-zero exit status 25 372s nova [W] Skipping flock for amd64 372s Creating nova instance adt-plucky-amd64-zarr-20241123-203026-juju-7f2275-prod-proposed-migration-environment-15-21e5d7a6-f924-4b1e-8705-d772f7583e7d from image adt/ubuntu-plucky-amd64-server-20241119.img (UUID 2e5306de-7efa-448c-bc27-5518979e66f0)...