0s autopkgtest [19:48:05]: starting date and time: 2024-11-18 19:48:05+0000
  0s autopkgtest [19:48:05]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [19:48:05]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.n6xmgiib/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:h5py,src:openmpi,src:sphinx-rtd-theme --apt-upgrade unifrac --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=h5py/3.11.0-8ubuntu1 openmpi/5.0.5-6 sphinx-rtd-theme/3.0.2+dfsg-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-14.secgroup --name adt-plucky-amd64-unifrac-20241118-194805-juju-7f2275-prod-proposed-migration-environment-15-ea844a5b-dbaa-4c15-9eb1-dd4ad30a1e35 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 43s autopkgtest [19:48:48]: testbed dpkg architecture: amd64
 43s autopkgtest [19:48:48]: testbed apt version: 2.9.8
 43s autopkgtest [19:48:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 44s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
 44s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
 44s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.5 kB]
 44s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [826 kB]
 44s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [72.9 kB]
 44s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [112 kB]
 44s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [65.1 kB]
 44s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB]
 44s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [666 kB]
 44s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [263 kB]
 44s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [772 B]
 44s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [7272 B]
 45s Fetched 2140 kB in 1s (2662 kB/s)
 45s Reading package lists...
 47s Reading package lists...
 47s Building dependency tree...
 47s Reading state information...
 47s Calculating upgrade...
 48s The following NEW packages will be installed:
 48s   liblsof0
 48s The following packages will be upgraded:
 48s   libnvme1t64 linux-firmware lsof
 48s 3 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
 48s Need to get 538 MB of archives.
 48s After this operation, 1578 kB of additional disk space will be used.
 48s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsof0 amd64 4.99.3+dfsg-2 [59.4 kB]
 48s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 lsof amd64 4.99.3+dfsg-2 [245 kB]
 48s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libnvme1t64 amd64 1.11.1-1 [88.7 kB]
 48s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20241118.git6e4e94b0-0ubuntu1 [537 MB]
 68s Fetched 538 MB in 20s (26.5 MB/s)
 68s Selecting previously unselected package liblsof0.
 68s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75590 files and directories currently installed.)
 68s Preparing to unpack .../liblsof0_4.99.3+dfsg-2_amd64.deb ...
 68s Unpacking liblsof0 (4.99.3+dfsg-2) ...
 68s Preparing to unpack .../lsof_4.99.3+dfsg-2_amd64.deb ...
 68s Unpacking lsof (4.99.3+dfsg-2) over (4.95.0-1.1) ...
 68s Preparing to unpack .../libnvme1t64_1.11.1-1_amd64.deb ...
 68s Unpacking libnvme1t64 (1.11.1-1) over (1.11-2) ...
 68s Preparing to unpack .../linux-firmware_20241118.git6e4e94b0-0ubuntu1_amd64.deb ...
 68s Unpacking linux-firmware (20241118.git6e4e94b0-0ubuntu1) over (20241108.git3bbb13a7-0ubuntu1) ...
 71s Setting up linux-firmware (20241118.git6e4e94b0-0ubuntu1) ...
 71s Setting up liblsof0 (4.99.3+dfsg-2) ...
 71s Setting up libnvme1t64 (1.11.1-1) ...
 71s Setting up lsof (4.99.3+dfsg-2) ...
 71s Processing triggers for man-db (2.13.0-1) ...
 71s Processing triggers for libc-bin (2.40-1ubuntu3) ...
 71s Processing triggers for initramfs-tools (0.142ubuntu35) ...
 71s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic
 71s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
 79s Reading package lists...
 80s Building dependency tree...
 80s Reading state information...
 80s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 80s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
 80s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
 80s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 80s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
 81s Reading package lists...
 81s Reading package lists...
 82s Building dependency tree...
 82s Reading state information...
 82s Calculating upgrade...
 82s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 82s Reading package lists...
 82s Building dependency tree...
 82s Reading state information...
 83s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 83s autopkgtest [19:49:28]: rebooting testbed after setup commands that affected boot
 99s autopkgtest [19:49:44]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024
102s autopkgtest [19:49:47]: @@@@@@@@@@@@@@@@@@@@ apt-source unifrac
104s Get:1 http://ftpmaster.internal/ubuntu plucky/universe unifrac 1.3-4 (dsc) [2198 B]
104s Get:2 http://ftpmaster.internal/ubuntu plucky/universe unifrac 1.3-4 (tar) [65.9 kB]
104s Get:3 http://ftpmaster.internal/ubuntu plucky/universe unifrac 1.3-4 (diff) [7788 B]
104s gpgv: Signature made Sun Sep  8 11:06:50 2024 UTC
104s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
104s gpgv: Can't check signature: No public key
104s dpkg-source: warning: cannot verify inline signature for ./unifrac_1.3-4.dsc: no acceptable signature found
104s autopkgtest [19:49:49]: testing package unifrac version 1.3-4
104s autopkgtest [19:49:49]: build not needed
105s autopkgtest [19:49:50]: test pybuild-autopkgtest: preparing testbed
106s Reading package lists...
106s Building dependency tree...
106s Reading state information...
106s Starting pkgProblemResolver with broken count: 0
106s Starting 2 pkgProblemResolver with broken count: 0
106s Done
106s The following additional packages will be installed:
106s   autoconf automake autopoint autotools-dev build-essential cpp cpp-14
106s   cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cython3 debhelper debugedit
106s   dh-autoreconf dh-exec dh-python dh-strip-nondeterminism dwz g++ g++-14
106s   g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14
106s   gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext hdf5-helpers
106s   intltool-debian libaec-dev libaec0 libarchive-zip-perl libasan8 libblas3
106s   libbrotli-dev libcc1-0 libcurl4-openssl-dev libdebhelper-perl
106s   libevent-2.1-7t64 libexpat1-dev libfile-stripnondeterminism-perl
106s   libgcc-14-dev libgfortran5 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64
106s   libgnutls-openssl27t64 libgnutls28-dev libgomp1 libhdf5-103-1t64
106s   libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64 libhdf5-hl-100t64
106s   libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libhwasan0 libidn2-dev
106s   libisl23 libitm1 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8
106s   libjpeg8-dev libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3
106s   liblapacke liblbfgsb0 liblsan0 liblzf1 libmpc3 libnghttp2-dev libp11-kit-dev
106s   libpkgconf3 libpsl-dev libpython3-all-dev libpython3-dev libpython3.12-dev
106s   libquadmath0 librtmp-dev libssh2-1-dev libssl-dev libssu-dev libssu0 libssw0
106s   libstdc++-14-dev libsz2 libtasn1-6-dev libtmglib3 libtool libtsan2 libubsan1
106s   libunbound8 libzstd-dev m4 nettle-dev pkgconf pkgconf-bin po-debconf
106s   pybuild-plugin-autopkgtest python3-all python3-all-dev python3-biom-format
106s   python3-click python3-colorama python3-dateutil python3-decorator
106s   python3-dev python3-h5py python3-h5py-serial python3-hdmedians
106s   python3-iniconfig python3-iow python3-natsort python3-numpy
106s   python3-packaging python3-pandas python3-pandas-lib python3-patsy
106s   python3-pluggy python3-pytest python3-scipy python3-skbio
106s   python3-statsmodels python3-statsmodels-lib python3-tz python3-unifrac
106s   python3.12-dev zlib1g-dev
106s Suggested packages:
106s   autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales
106s   cpp-14-doc cython-doc dh-make flit python3-build python3-installer
106s   python3-wheel g++-multilib g++-14-multilib gcc-14-doc gcc-multilib
106s   manpages-dev flex bison gdb gcc-doc gcc-14-multilib gdb-x86-64-linux-gnu
106s   gettext-doc libasprintf-dev libgettextpo-dev libcurl4-doc libidn-dev
106s   libkrb5-dev libldap2-dev gmp-doc libgmp10-doc libmpfr-dev dns-root-data
106s   gnutls-bin gnutls-doc libhdf5-doc libnghttp2-doc p11-kit-doc libssl-doc
106s   libstdc++-14-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
106s   libmail-box-perl python-biom-format-doc python-h5py-doc python-natsort-doc
106s   gfortran python-numpy-doc python-pandas-doc python-patsy-doc
106s   python-scipy-doc python-skbio-doc python-statsmodels-doc
106s Recommended packages:
106s   libarchive-cpio-perl javascript-common libtasn1-doc libltdl-dev
106s   libmail-sendmail-perl python3-matplotlib python3-bottleneck python3-numexpr
106s   python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml
106s   python3-tables python3-numba python3-pil python3-joblib python3-cvxopt
106s The following NEW packages will be installed:
106s   autoconf automake autopkgtest-satdep autopoint autotools-dev build-essential
106s   cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cython3 debhelper
106s   debugedit dh-autoreconf dh-exec dh-python dh-strip-nondeterminism dwz g++
106s   g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14
106s   gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext hdf5-helpers
106s   intltool-debian libaec-dev libaec0 libarchive-zip-perl libasan8 libblas3
106s   libbrotli-dev libcc1-0 libcurl4-openssl-dev libdebhelper-perl
106s   libevent-2.1-7t64 libexpat1-dev libfile-stripnondeterminism-perl
106s   libgcc-14-dev libgfortran5 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64
106s   libgnutls-openssl27t64 libgnutls28-dev libgomp1 libhdf5-103-1t64
106s   libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64 libhdf5-hl-100t64
106s   libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libhwasan0 libidn2-dev
106s   libisl23 libitm1 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8
106s   libjpeg8-dev libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3
106s   liblapacke liblbfgsb0 liblsan0 liblzf1 libmpc3 libnghttp2-dev libp11-kit-dev
106s   libpkgconf3 libpsl-dev libpython3-all-dev libpython3-dev libpython3.12-dev
106s   libquadmath0 librtmp-dev libssh2-1-dev libssl-dev libssu-dev libssu0 libssw0
106s   libstdc++-14-dev libsz2 libtasn1-6-dev libtmglib3 libtool libtsan2 libubsan1
106s   libunbound8 libzstd-dev m4 nettle-dev pkgconf pkgconf-bin po-debconf
106s   pybuild-plugin-autopkgtest python3-all python3-all-dev python3-biom-format
106s   python3-click python3-colorama python3-dateutil python3-decorator
106s   python3-dev python3-h5py python3-h5py-serial python3-hdmedians
106s   python3-iniconfig python3-iow python3-natsort python3-numpy
106s   python3-packaging python3-pandas python3-pandas-lib python3-patsy
106s   python3-pluggy python3-pytest python3-scipy python3-skbio
106s   python3-statsmodels python3-statsmodels-lib python3-tz python3-unifrac
106s   python3.12-dev zlib1g-dev
106s 0 upgraded, 132 newly installed, 0 to remove and 0 not upgraded.
106s Need to get 150 MB/150 MB of archives.
106s After this operation, 658 MB of additional disk space will be used.
106s Get:1 /tmp/autopkgtest.oJgFwt/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [868 B]
107s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 m4 amd64 1.4.19-4build1 [244 kB]
107s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 autoconf all 2.72-3 [382 kB]
107s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 autotools-dev all 20220109.1 [44.9 kB]
107s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 automake all 1:1.16.5-1.3ubuntu1 [558 kB]
107s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 autopoint all 0.22.5-2 [616 kB]
107s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB]
107s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB]
107s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [11.9 MB]
107s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-8ubuntu1 [1030 B]
107s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B]
107s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB]
107s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-8ubuntu1 [47.6 kB]
107s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB]
107s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-8ubuntu1 [29.1 kB]
107s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-8ubuntu1 [2998 kB]
108s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-8ubuntu1 [1317 kB]
108s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-8ubuntu1 [2732 kB]
108s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-8ubuntu1 [1177 kB]
108s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-8ubuntu1 [1634 kB]
108s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-8ubuntu1 [153 kB]
108s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-8ubuntu1 [2814 kB]
108s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [23.3 MB]
108s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-8ubuntu1 [528 kB]
108s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B]
108s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B]
108s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-8ubuntu1 [2504 kB]
108s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [13.3 MB]
109s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-8ubuntu1 [19.9 kB]
109s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B]
109s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B]
109s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
109s Get:33 http://ftpmaster.internal/ubuntu plucky/universe amd64 cython3 amd64 3.0.11+dfsg-1ubuntu2 [3368 kB]
109s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB]
109s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libtool all 2.4.7-8 [166 kB]
109s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-autoreconf all 20 [16.1 kB]
109s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB]
109s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB]
109s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-strip-nondeterminism all 1.14.0-1 [5058 B]
109s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 debugedit amd64 1:5.1-1 [46.9 kB]
109s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 dwz amd64 0.15-1build6 [115 kB]
109s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gettext amd64 0.22.5-2 [948 kB]
109s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB]
109s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 po-debconf all 1.0.21+nmu1 [233 kB]
109s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 debhelper all 13.20ubuntu1 [893 kB]
109s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 dh-python all 6.20241024 [112 kB]
109s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 hdf5-helpers amd64 1.10.10+repack-4ubuntu3 [16.2 kB]
109s Get:48 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB]
109s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB]
109s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli-dev amd64 1.1.0-2build3 [381 kB]
109s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libidn2-dev amd64 2.3.7-2build2 [120 kB]
109s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB]
109s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB]
109s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB]
109s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libnghttp2-dev amd64 1.64.0-1 [123 kB]
109s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libpsl-dev amd64 0.21.2-1.1build1 [76.4 kB]
109s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-2ubuntu7 [10.0 kB]
109s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-2ubuntu7 [341 kB]
109s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10 [144 kB]
109s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libunbound8 amd64 1.20.0-1ubuntu2.1 [447 kB]
109s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls-dane0t64 amd64 3.8.8-2ubuntu1 [24.3 kB]
109s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls-openssl27t64 amd64 3.8.8-2ubuntu1 [24.5 kB]
109s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libp11-kit-dev amd64 0.25.5-2ubuntu1 [22.7 kB]
109s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libtasn1-6-dev amd64 4.19.0-3build1 [90.5 kB]
109s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 nettle-dev amd64 3.10-1 [1172 kB]
109s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls28-dev amd64 3.8.8-2ubuntu1 [1108 kB]
109s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB]
109s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2build7 [66.7 kB]
109s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libssl-dev amd64 3.3.1-2ubuntu2 [2686 kB]
109s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libssh2-1-dev amd64 1.11.1-1 [292 kB]
109s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libzstd-dev amd64 1.5.6+dfsg-1 [371 kB]
109s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4-openssl-dev amd64 8.9.1-2ubuntu2 [483 kB]
109s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libexpat1-dev amd64 2.6.4-1 [148 kB]
109s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB]
109s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B]
109s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1280 kB]
109s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-cpp-103-1t64 amd64 1.10.10+repack-4ubuntu3 [124 kB]
109s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-fortran-102t64 amd64 1.10.10+repack-4ubuntu3 [84.1 kB]
109s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4ubuntu3 [56.6 kB]
109s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-fortran-100t64 amd64 1.10.10+repack-4ubuntu3 [31.3 kB]
109s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-cpp-100t64 amd64 1.10.10+repack-4ubuntu3 [11.2 kB]
109s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu2 [150 kB]
109s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu2 [295 kB]
109s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
109s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B]
109s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B]
109s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec-dev amd64 1.1.3-1 [19.8 kB]
109s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-dev amd64 1.10.10+repack-4ubuntu3 [2784 kB]
110s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
110s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
110s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB]
110s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB]
110s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libtmglib3 amd64 3.12.0-3build2 [142 kB]
110s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapacke amd64 3.12.0-3build2 [407 kB]
110s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB]
110s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblzf1 amd64 3.6-4 [7624 B]
110s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.12-dev amd64 3.12.7-3 [5699 kB]
110s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-dev amd64 3.12.6-0ubuntu1 [10.2 kB]
110s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-all-dev amd64 3.12.6-0ubuntu1 [916 B]
110s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 libssu0 amd64 1.4-3build2 [163 kB]
110s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 libssu-dev amd64 1.4-3build2 [8294 B]
110s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 libssw0 amd64 1.1-15 [22.5 kB]
110s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-autopkgtest all 6.20241024 [1746 B]
110s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all amd64 3.12.6-0ubuntu1 [886 B]
110s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-dev amd64 3.12.7-3 [505 kB]
110s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dev amd64 3.12.6-0ubuntu1 [26.7 kB]
110s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all-dev amd64 3.12.6-0ubuntu1 [908 B]
110s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11ubuntu1 [5319 kB]
111s Get:109 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-h5py-serial amd64 3.11.0-8ubuntu1 [1686 kB]
111s Get:110 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-h5py all 3.11.0-8ubuntu1 [7982 B]
111s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-colorama all 0.4.6-4 [32.1 kB]
111s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-click all 8.1.7-2 [79.5 kB]
111s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-3 [80.2 kB]
111s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2024.1-2 [31.4 kB]
111s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-5ubuntu1 [8271 kB]
111s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas all 2.2.3+dfsg-5ubuntu1 [3112 kB]
111s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB]
111s Get:118 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.13.1-5ubuntu1 [21.7 MB]
112s Get:119 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-biom-format amd64 2.1.16-1 [141 kB]
112s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-hdmedians amd64 0.14.2-5.1build2 [200 kB]
112s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B]
112s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-natsort all 8.0.2-2 [33.8 kB]
112s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.2-1 [51.5 kB]
112s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-patsy all 1.0.1-1 [180 kB]
112s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-statsmodels-lib amd64 0.14.4+dfsg-1build1 [2808 kB]
112s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-statsmodels all 0.14.4+dfsg-1build1 [5011 kB]
112s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-skbio amd64 0.6.2-3 [1407 kB]
112s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iow amd64 1.0.7-1 [448 kB]
112s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB]
112s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB]
112s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-unifrac amd64 1.3-4 [161 kB]
112s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-exec amd64 0.30 [25.6 kB]
113s Fetched 150 MB in 6s (26.2 MB/s)
113s Selecting previously unselected package m4.
113s (Reading database ... 
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(Reading database ... 90%
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(Reading database ... 75620 files and directories currently installed.)
113s Preparing to unpack .../000-m4_1.4.19-4build1_amd64.deb ...
113s Unpacking m4 (1.4.19-4build1) ...
113s Selecting previously unselected package autoconf.
113s Preparing to unpack .../001-autoconf_2.72-3_all.deb ...
113s Unpacking autoconf (2.72-3) ...
113s Selecting previously unselected package autotools-dev.
113s Preparing to unpack .../002-autotools-dev_20220109.1_all.deb ...
113s Unpacking autotools-dev (20220109.1) ...
113s Selecting previously unselected package automake.
113s Preparing to unpack .../003-automake_1%3a1.16.5-1.3ubuntu1_all.deb ...
113s Unpacking automake (1:1.16.5-1.3ubuntu1) ...
113s Selecting previously unselected package autopoint.
113s Preparing to unpack .../004-autopoint_0.22.5-2_all.deb ...
113s Unpacking autopoint (0.22.5-2) ...
113s Selecting previously unselected package libisl23:amd64.
113s Preparing to unpack .../005-libisl23_0.27-1_amd64.deb ...
113s Unpacking libisl23:amd64 (0.27-1) ...
113s Selecting previously unselected package libmpc3:amd64.
113s Preparing to unpack .../006-libmpc3_1.3.1-1build2_amd64.deb ...
113s Unpacking libmpc3:amd64 (1.3.1-1build2) ...
113s Selecting previously unselected package cpp-14-x86-64-linux-gnu.
113s Preparing to unpack .../007-cpp-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ...
113s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ...
113s Selecting previously unselected package cpp-14.
113s Preparing to unpack .../008-cpp-14_14.2.0-8ubuntu1_amd64.deb ...
113s Unpacking cpp-14 (14.2.0-8ubuntu1) ...
113s Selecting previously unselected package cpp-x86-64-linux-gnu.
113s Preparing to unpack .../009-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ...
113s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ...
113s Selecting previously unselected package cpp.
113s Preparing to unpack .../010-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ...
113s Unpacking cpp (4:14.1.0-2ubuntu1) ...
113s Selecting previously unselected package libcc1-0:amd64.
113s Preparing to unpack .../011-libcc1-0_14.2.0-8ubuntu1_amd64.deb ...
113s Unpacking libcc1-0:amd64 (14.2.0-8ubuntu1) ...
113s Selecting previously unselected package libgomp1:amd64.
113s Preparing to unpack .../012-libgomp1_14.2.0-8ubuntu1_amd64.deb ...
113s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ...
113s Selecting previously unselected package libitm1:amd64.
113s Preparing to unpack .../013-libitm1_14.2.0-8ubuntu1_amd64.deb ...
113s Unpacking libitm1:amd64 (14.2.0-8ubuntu1) ...
113s Selecting previously unselected package libasan8:amd64.
113s Preparing to unpack .../014-libasan8_14.2.0-8ubuntu1_amd64.deb ...
113s Unpacking libasan8:amd64 (14.2.0-8ubuntu1) ...
113s Selecting previously unselected package liblsan0:amd64.
113s Preparing to unpack .../015-liblsan0_14.2.0-8ubuntu1_amd64.deb ...
113s Unpacking liblsan0:amd64 (14.2.0-8ubuntu1) ...
113s Selecting previously unselected package libtsan2:amd64.
113s Preparing to unpack .../016-libtsan2_14.2.0-8ubuntu1_amd64.deb ...
113s Unpacking libtsan2:amd64 (14.2.0-8ubuntu1) ...
113s Selecting previously unselected package libubsan1:amd64.
113s Preparing to unpack .../017-libubsan1_14.2.0-8ubuntu1_amd64.deb ...
113s Unpacking libubsan1:amd64 (14.2.0-8ubuntu1) ...
113s Selecting previously unselected package libhwasan0:amd64.
113s Preparing to unpack .../018-libhwasan0_14.2.0-8ubuntu1_amd64.deb ...
113s Unpacking libhwasan0:amd64 (14.2.0-8ubuntu1) ...
113s Selecting previously unselected package libquadmath0:amd64.
114s Preparing to unpack .../019-libquadmath0_14.2.0-8ubuntu1_amd64.deb ...
114s Unpacking libquadmath0:amd64 (14.2.0-8ubuntu1) ...
114s Selecting previously unselected package libgcc-14-dev:amd64.
114s Preparing to unpack .../020-libgcc-14-dev_14.2.0-8ubuntu1_amd64.deb ...
114s Unpacking libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ...
114s Selecting previously unselected package gcc-14-x86-64-linux-gnu.
114s Preparing to unpack .../021-gcc-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ...
114s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ...
114s Selecting previously unselected package gcc-14.
114s Preparing to unpack .../022-gcc-14_14.2.0-8ubuntu1_amd64.deb ...
114s Unpacking gcc-14 (14.2.0-8ubuntu1) ...
114s Selecting previously unselected package gcc-x86-64-linux-gnu.
114s Preparing to unpack .../023-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ...
114s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ...
114s Selecting previously unselected package gcc.
114s Preparing to unpack .../024-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ...
114s Unpacking gcc (4:14.1.0-2ubuntu1) ...
114s Selecting previously unselected package libstdc++-14-dev:amd64.
114s Preparing to unpack .../025-libstdc++-14-dev_14.2.0-8ubuntu1_amd64.deb ...
114s Unpacking libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ...
114s Selecting previously unselected package g++-14-x86-64-linux-gnu.
114s Preparing to unpack .../026-g++-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ...
114s Unpacking g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ...
114s Selecting previously unselected package g++-14.
114s Preparing to unpack .../027-g++-14_14.2.0-8ubuntu1_amd64.deb ...
114s Unpacking g++-14 (14.2.0-8ubuntu1) ...
114s Selecting previously unselected package g++-x86-64-linux-gnu.
114s Preparing to unpack .../028-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ...
114s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ...
114s Selecting previously unselected package g++.
114s Preparing to unpack .../029-g++_4%3a14.1.0-2ubuntu1_amd64.deb ...
114s Unpacking g++ (4:14.1.0-2ubuntu1) ...
114s Selecting previously unselected package build-essential.
114s Preparing to unpack .../030-build-essential_12.10ubuntu1_amd64.deb ...
114s Unpacking build-essential (12.10ubuntu1) ...
114s Selecting previously unselected package cython3.
114s Preparing to unpack .../031-cython3_3.0.11+dfsg-1ubuntu2_amd64.deb ...
114s Unpacking cython3 (3.0.11+dfsg-1ubuntu2) ...
115s Selecting previously unselected package libdebhelper-perl.
115s Preparing to unpack .../032-libdebhelper-perl_13.20ubuntu1_all.deb ...
115s Unpacking libdebhelper-perl (13.20ubuntu1) ...
115s Selecting previously unselected package libtool.
115s Preparing to unpack .../033-libtool_2.4.7-8_all.deb ...
115s Unpacking libtool (2.4.7-8) ...
115s Selecting previously unselected package dh-autoreconf.
115s Preparing to unpack .../034-dh-autoreconf_20_all.deb ...
115s Unpacking dh-autoreconf (20) ...
115s Selecting previously unselected package libarchive-zip-perl.
115s Preparing to unpack .../035-libarchive-zip-perl_1.68-1_all.deb ...
115s Unpacking libarchive-zip-perl (1.68-1) ...
115s Selecting previously unselected package libfile-stripnondeterminism-perl.
115s Preparing to unpack .../036-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ...
115s Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ...
115s Selecting previously unselected package dh-strip-nondeterminism.
115s Preparing to unpack .../037-dh-strip-nondeterminism_1.14.0-1_all.deb ...
115s Unpacking dh-strip-nondeterminism (1.14.0-1) ...
115s Selecting previously unselected package debugedit.
115s Preparing to unpack .../038-debugedit_1%3a5.1-1_amd64.deb ...
115s Unpacking debugedit (1:5.1-1) ...
115s Selecting previously unselected package dwz.
115s Preparing to unpack .../039-dwz_0.15-1build6_amd64.deb ...
115s Unpacking dwz (0.15-1build6) ...
115s Selecting previously unselected package gettext.
115s Preparing to unpack .../040-gettext_0.22.5-2_amd64.deb ...
115s Unpacking gettext (0.22.5-2) ...
115s Selecting previously unselected package intltool-debian.
115s Preparing to unpack .../041-intltool-debian_0.35.0+20060710.6_all.deb ...
115s Unpacking intltool-debian (0.35.0+20060710.6) ...
115s Selecting previously unselected package po-debconf.
115s Preparing to unpack .../042-po-debconf_1.0.21+nmu1_all.deb ...
115s Unpacking po-debconf (1.0.21+nmu1) ...
115s Selecting previously unselected package debhelper.
115s Preparing to unpack .../043-debhelper_13.20ubuntu1_all.deb ...
115s Unpacking debhelper (13.20ubuntu1) ...
115s Selecting previously unselected package dh-python.
115s Preparing to unpack .../044-dh-python_6.20241024_all.deb ...
115s Unpacking dh-python (6.20241024) ...
115s Selecting previously unselected package hdf5-helpers.
115s Preparing to unpack .../045-hdf5-helpers_1.10.10+repack-4ubuntu3_amd64.deb ...
115s Unpacking hdf5-helpers (1.10.10+repack-4ubuntu3) ...
115s Selecting previously unselected package libaec0:amd64.
115s Preparing to unpack .../046-libaec0_1.1.3-1_amd64.deb ...
115s Unpacking libaec0:amd64 (1.1.3-1) ...
115s Selecting previously unselected package libblas3:amd64.
115s Preparing to unpack .../047-libblas3_3.12.0-3build2_amd64.deb ...
115s Unpacking libblas3:amd64 (3.12.0-3build2) ...
115s Selecting previously unselected package libbrotli-dev:amd64.
115s Preparing to unpack .../048-libbrotli-dev_1.1.0-2build3_amd64.deb ...
115s Unpacking libbrotli-dev:amd64 (1.1.0-2build3) ...
115s Selecting previously unselected package libidn2-dev:amd64.
115s Preparing to unpack .../049-libidn2-dev_2.3.7-2build2_amd64.deb ...
115s Unpacking libidn2-dev:amd64 (2.3.7-2build2) ...
115s Selecting previously unselected package libpkgconf3:amd64.
115s Preparing to unpack .../050-libpkgconf3_1.8.1-4_amd64.deb ...
115s Unpacking libpkgconf3:amd64 (1.8.1-4) ...
115s Selecting previously unselected package pkgconf-bin.
115s Preparing to unpack .../051-pkgconf-bin_1.8.1-4_amd64.deb ...
115s Unpacking pkgconf-bin (1.8.1-4) ...
115s Selecting previously unselected package pkgconf:amd64.
115s Preparing to unpack .../052-pkgconf_1.8.1-4_amd64.deb ...
115s Unpacking pkgconf:amd64 (1.8.1-4) ...
115s Selecting previously unselected package libnghttp2-dev:amd64.
115s Preparing to unpack .../053-libnghttp2-dev_1.64.0-1_amd64.deb ...
115s Unpacking libnghttp2-dev:amd64 (1.64.0-1) ...
115s Selecting previously unselected package libpsl-dev:amd64.
115s Preparing to unpack .../054-libpsl-dev_0.21.2-1.1build1_amd64.deb ...
115s Unpacking libpsl-dev:amd64 (0.21.2-1.1build1) ...
115s Selecting previously unselected package libgmpxx4ldbl:amd64.
115s Preparing to unpack .../055-libgmpxx4ldbl_2%3a6.3.0+dfsg-2ubuntu7_amd64.deb ...
115s Unpacking libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-2ubuntu7) ...
115s Selecting previously unselected package libgmp-dev:amd64.
115s Preparing to unpack .../056-libgmp-dev_2%3a6.3.0+dfsg-2ubuntu7_amd64.deb ...
115s Unpacking libgmp-dev:amd64 (2:6.3.0+dfsg-2ubuntu7) ...
115s Selecting previously unselected package libevent-2.1-7t64:amd64.
115s Preparing to unpack .../057-libevent-2.1-7t64_2.1.12-stable-10_amd64.deb ...
115s Unpacking libevent-2.1-7t64:amd64 (2.1.12-stable-10) ...
115s Selecting previously unselected package libunbound8:amd64.
115s Preparing to unpack .../058-libunbound8_1.20.0-1ubuntu2.1_amd64.deb ...
115s Unpacking libunbound8:amd64 (1.20.0-1ubuntu2.1) ...
115s Selecting previously unselected package libgnutls-dane0t64:amd64.
115s Preparing to unpack .../059-libgnutls-dane0t64_3.8.8-2ubuntu1_amd64.deb ...
115s Unpacking libgnutls-dane0t64:amd64 (3.8.8-2ubuntu1) ...
115s Selecting previously unselected package libgnutls-openssl27t64:amd64.
116s Preparing to unpack .../060-libgnutls-openssl27t64_3.8.8-2ubuntu1_amd64.deb ...
116s Unpacking libgnutls-openssl27t64:amd64 (3.8.8-2ubuntu1) ...
116s Selecting previously unselected package libp11-kit-dev:amd64.
116s Preparing to unpack .../061-libp11-kit-dev_0.25.5-2ubuntu1_amd64.deb ...
116s Unpacking libp11-kit-dev:amd64 (0.25.5-2ubuntu1) ...
116s Selecting previously unselected package libtasn1-6-dev:amd64.
116s Preparing to unpack .../062-libtasn1-6-dev_4.19.0-3build1_amd64.deb ...
116s Unpacking libtasn1-6-dev:amd64 (4.19.0-3build1) ...
116s Selecting previously unselected package nettle-dev:amd64.
116s Preparing to unpack .../063-nettle-dev_3.10-1_amd64.deb ...
116s Unpacking nettle-dev:amd64 (3.10-1) ...
116s Selecting previously unselected package libgnutls28-dev:amd64.
116s Preparing to unpack .../064-libgnutls28-dev_3.8.8-2ubuntu1_amd64.deb ...
116s Unpacking libgnutls28-dev:amd64 (3.8.8-2ubuntu1) ...
116s Selecting previously unselected package zlib1g-dev:amd64.
116s Preparing to unpack .../065-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ...
116s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
116s Selecting previously unselected package librtmp-dev:amd64.
116s Preparing to unpack .../066-librtmp-dev_2.4+20151223.gitfa8646d.1-2build7_amd64.deb ...
116s Unpacking librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2build7) ...
116s Selecting previously unselected package libssl-dev:amd64.
116s Preparing to unpack .../067-libssl-dev_3.3.1-2ubuntu2_amd64.deb ...
116s Unpacking libssl-dev:amd64 (3.3.1-2ubuntu2) ...
116s Selecting previously unselected package libssh2-1-dev:amd64.
116s Preparing to unpack .../068-libssh2-1-dev_1.11.1-1_amd64.deb ...
116s Unpacking libssh2-1-dev:amd64 (1.11.1-1) ...
116s Selecting previously unselected package libzstd-dev:amd64.
116s Preparing to unpack .../069-libzstd-dev_1.5.6+dfsg-1_amd64.deb ...
116s Unpacking libzstd-dev:amd64 (1.5.6+dfsg-1) ...
116s Selecting previously unselected package libcurl4-openssl-dev:amd64.
116s Preparing to unpack .../070-libcurl4-openssl-dev_8.9.1-2ubuntu2_amd64.deb ...
116s Unpacking libcurl4-openssl-dev:amd64 (8.9.1-2ubuntu2) ...
116s Selecting previously unselected package libexpat1-dev:amd64.
116s Preparing to unpack .../071-libexpat1-dev_2.6.4-1_amd64.deb ...
116s Unpacking libexpat1-dev:amd64 (2.6.4-1) ...
116s Selecting previously unselected package libgfortran5:amd64.
116s Preparing to unpack .../072-libgfortran5_14.2.0-8ubuntu1_amd64.deb ...
116s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ...
116s Selecting previously unselected package libsz2:amd64.
116s Preparing to unpack .../073-libsz2_1.1.3-1_amd64.deb ...
116s Unpacking libsz2:amd64 (1.1.3-1) ...
116s Selecting previously unselected package libhdf5-103-1t64:amd64.
116s Preparing to unpack .../074-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ...
116s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ...
116s Selecting previously unselected package libhdf5-cpp-103-1t64:amd64.
116s Preparing to unpack .../075-libhdf5-cpp-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ...
116s Unpacking libhdf5-cpp-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ...
116s Selecting previously unselected package libhdf5-fortran-102t64:amd64.
116s Preparing to unpack .../076-libhdf5-fortran-102t64_1.10.10+repack-4ubuntu3_amd64.deb ...
116s Unpacking libhdf5-fortran-102t64:amd64 (1.10.10+repack-4ubuntu3) ...
116s Selecting previously unselected package libhdf5-hl-100t64:amd64.
116s Preparing to unpack .../077-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_amd64.deb ...
116s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ...
116s Selecting previously unselected package libhdf5-hl-fortran-100t64:amd64.
116s Preparing to unpack .../078-libhdf5-hl-fortran-100t64_1.10.10+repack-4ubuntu3_amd64.deb ...
116s Unpacking libhdf5-hl-fortran-100t64:amd64 (1.10.10+repack-4ubuntu3) ...
116s Selecting previously unselected package libhdf5-hl-cpp-100t64:amd64.
116s Preparing to unpack .../079-libhdf5-hl-cpp-100t64_1.10.10+repack-4ubuntu3_amd64.deb ...
116s Unpacking libhdf5-hl-cpp-100t64:amd64 (1.10.10+repack-4ubuntu3) ...
116s Selecting previously unselected package libjpeg-turbo8:amd64.
116s Preparing to unpack .../080-libjpeg-turbo8_2.1.5-2ubuntu2_amd64.deb ...
116s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ...
116s Selecting previously unselected package libjpeg-turbo8-dev:amd64.
116s Preparing to unpack .../081-libjpeg-turbo8-dev_2.1.5-2ubuntu2_amd64.deb ...
116s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu2) ...
116s Selecting previously unselected package libjpeg8:amd64.
116s Preparing to unpack .../082-libjpeg8_8c-2ubuntu11_amd64.deb ...
116s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ...
116s Selecting previously unselected package libjpeg8-dev:amd64.
116s Preparing to unpack .../083-libjpeg8-dev_8c-2ubuntu11_amd64.deb ...
116s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ...
116s Selecting previously unselected package libjpeg-dev:amd64.
116s Preparing to unpack .../084-libjpeg-dev_8c-2ubuntu11_amd64.deb ...
116s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ...
116s Selecting previously unselected package libaec-dev:amd64.
116s Preparing to unpack .../085-libaec-dev_1.1.3-1_amd64.deb ...
116s Unpacking libaec-dev:amd64 (1.1.3-1) ...
116s Selecting previously unselected package libhdf5-dev.
116s Preparing to unpack .../086-libhdf5-dev_1.10.10+repack-4ubuntu3_amd64.deb ...
116s Unpacking libhdf5-dev (1.10.10+repack-4ubuntu3) ...
116s Selecting previously unselected package libjs-jquery.
116s Preparing to unpack .../087-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
116s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
116s Selecting previously unselected package libjs-underscore.
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116s Selecting previously unselected package libjs-sphinxdoc.
116s Preparing to unpack .../089-libjs-sphinxdoc_7.4.7-4_all.deb ...
116s Unpacking libjs-sphinxdoc (7.4.7-4) ...
116s Selecting previously unselected package liblapack3:amd64.
116s Preparing to unpack .../090-liblapack3_3.12.0-3build2_amd64.deb ...
116s Unpacking liblapack3:amd64 (3.12.0-3build2) ...
116s Selecting previously unselected package libtmglib3:amd64.
116s Preparing to unpack .../091-libtmglib3_3.12.0-3build2_amd64.deb ...
116s Unpacking libtmglib3:amd64 (3.12.0-3build2) ...
117s Selecting previously unselected package liblapacke:amd64.
117s Preparing to unpack .../092-liblapacke_3.12.0-3build2_amd64.deb ...
117s Unpacking liblapacke:amd64 (3.12.0-3build2) ...
117s Selecting previously unselected package liblbfgsb0:amd64.
117s Preparing to unpack .../093-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ...
117s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ...
117s Selecting previously unselected package liblzf1:amd64.
117s Preparing to unpack .../094-liblzf1_3.6-4_amd64.deb ...
117s Unpacking liblzf1:amd64 (3.6-4) ...
117s Selecting previously unselected package libpython3.12-dev:amd64.
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117s Unpacking libpython3.12-dev:amd64 (3.12.7-3) ...
117s Selecting previously unselected package libpython3-dev:amd64.
117s Preparing to unpack .../096-libpython3-dev_3.12.6-0ubuntu1_amd64.deb ...
117s Unpacking libpython3-dev:amd64 (3.12.6-0ubuntu1) ...
117s Selecting previously unselected package libpython3-all-dev:amd64.
117s Preparing to unpack .../097-libpython3-all-dev_3.12.6-0ubuntu1_amd64.deb ...
117s Unpacking libpython3-all-dev:amd64 (3.12.6-0ubuntu1) ...
117s Selecting previously unselected package libssu0:amd64.
117s Preparing to unpack .../098-libssu0_1.4-3build2_amd64.deb ...
117s Unpacking libssu0:amd64 (1.4-3build2) ...
117s Selecting previously unselected package libssu-dev:amd64.
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117s Selecting previously unselected package libssw0:amd64.
117s Preparing to unpack .../100-libssw0_1.1-15_amd64.deb ...
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117s Selecting previously unselected package pybuild-plugin-autopkgtest.
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117s Selecting previously unselected package python3-all.
117s Preparing to unpack .../102-python3-all_3.12.6-0ubuntu1_amd64.deb ...
117s Unpacking python3-all (3.12.6-0ubuntu1) ...
117s Selecting previously unselected package python3.12-dev.
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117s Unpacking python3.12-dev (3.12.7-3) ...
117s Selecting previously unselected package python3-dev.
117s Preparing to unpack .../104-python3-dev_3.12.6-0ubuntu1_amd64.deb ...
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117s Selecting previously unselected package python3-all-dev.
117s Preparing to unpack .../105-python3-all-dev_3.12.6-0ubuntu1_amd64.deb ...
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117s Selecting previously unselected package python3-numpy.
117s Preparing to unpack .../106-python3-numpy_1%3a1.26.4+ds-11ubuntu1_amd64.deb ...
117s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ...
117s Selecting previously unselected package python3-h5py-serial.
117s Preparing to unpack .../107-python3-h5py-serial_3.11.0-8ubuntu1_amd64.deb ...
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117s Selecting previously unselected package python3-h5py.
117s Preparing to unpack .../108-python3-h5py_3.11.0-8ubuntu1_all.deb ...
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117s Selecting previously unselected package python3-colorama.
117s Preparing to unpack .../109-python3-colorama_0.4.6-4_all.deb ...
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117s Selecting previously unselected package python3-click.
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117s Selecting previously unselected package python3-dateutil.
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117s Selecting previously unselected package python3-tz.
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117s Selecting previously unselected package python3-pandas-lib:amd64.
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118s Selecting previously unselected package python3-pandas.
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118s Selecting previously unselected package python3-decorator.
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118s Selecting previously unselected package python3-scipy.
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119s Selecting previously unselected package python3-hdmedians.
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119s Selecting previously unselected package python3-statsmodels-lib:amd64.
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119s Setting up dh-python (6.20241024) ...
119s Setting up libgnutls-openssl27t64:amd64 (3.8.8-2ubuntu1) ...
119s Setting up python3-iniconfig (1.1.1-2) ...
120s Setting up libzstd-dev:amd64 (1.5.6+dfsg-1) ...
120s Setting up hdf5-helpers (1.10.10+repack-4ubuntu3) ...
120s Setting up python3-colorama (0.4.6-4) ...
120s Setting up libarchive-zip-perl (1.68-1) ...
120s Setting up libdebhelper-perl (13.20ubuntu1) ...
120s Setting up m4 (1.4.19-4build1) ...
120s Setting up libevent-2.1-7t64:amd64 (2.1.12-stable-10) ...
120s Setting up python3-all (3.12.6-0ubuntu1) ...
120s Setting up libgomp1:amd64 (14.2.0-8ubuntu1) ...
120s Setting up python3-click (8.1.7-2) ...
120s Setting up libaec0:amd64 (1.1.3-1) ...
120s Setting up python3-tz (2024.1-2) ...
120s Setting up python3-natsort (8.0.2-2) ...
120s Setting up libpsl-dev:amd64 (0.21.2-1.1build1) ...
120s Setting up python3-decorator (5.1.1-5) ...
120s Setting up autotools-dev (20220109.1) ...
120s Setting up libblas3:amd64 (3.12.0-3build2) ...
120s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
120s Setting up python3-packaging (24.2-1) ...
120s Setting up libunbound8:amd64 (1.20.0-1ubuntu2.1) ...
120s Setting up libpkgconf3:amd64 (1.8.1-4) ...
120s Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-2ubuntu7) ...
120s Setting up libexpat1-dev:amd64 (2.6.4-1) ...
120s Setting up libgnutls-dane0t64:amd64 (3.8.8-2ubuntu1) ...
120s Setting up liblzf1:amd64 (3.6-4) ...
120s Setting up libquadmath0:amd64 (14.2.0-8ubuntu1) ...
120s Setting up libssl-dev:amd64 (3.3.1-2ubuntu2) ...
120s Setting up libmpc3:amd64 (1.3.1-1build2) ...
120s Setting up cython3 (3.0.11+dfsg-1ubuntu2) ...
121s Setting up autopoint (0.22.5-2) ...
121s Setting up pkgconf-bin (1.8.1-4) ...
121s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ...
121s Setting up libidn2-dev:amd64 (2.3.7-2build2) ...
121s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ...
121s Setting up autoconf (2.72-3) ...
121s Setting up python3-pluggy (1.5.0-1) ...
121s Setting up libubsan1:amd64 (14.2.0-8ubuntu1) ...
121s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
121s Setting up dwz (0.15-1build6) ...
121s Setting up libhwasan0:amd64 (14.2.0-8ubuntu1) ...
121s Setting up libasan8:amd64 (14.2.0-8ubuntu1) ...
121s Setting up debugedit (1:5.1-1) ...
121s Setting up python3-dateutil (2.9.0-3) ...
121s Setting up libtsan2:amd64 (14.2.0-8ubuntu1) ...
121s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
121s Setting up libisl23:amd64 (0.27-1) ...
121s Setting up libtasn1-6-dev:amd64 (4.19.0-3build1) ...
121s Setting up libssw0:amd64 (1.1-15) ...
121s Setting up libcc1-0:amd64 (14.2.0-8ubuntu1) ...
121s Setting up libbrotli-dev:amd64 (1.1.0-2build3) ...
121s Setting up liblsan0:amd64 (14.2.0-8ubuntu1) ...
121s Setting up libp11-kit-dev:amd64 (0.25.5-2ubuntu1) ...
121s Setting up libsz2:amd64 (1.1.3-1) ...
121s Setting up libitm1:amd64 (14.2.0-8ubuntu1) ...
121s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
121s Setting up libjpeg8:amd64 (8c-2ubuntu11) ...
121s Setting up automake (1:1.16.5-1.3ubuntu1) ...
121s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
121s Setting up libfile-stripnondeterminism-perl (1.14.0-1) ...
121s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu2) ...
121s Setting up liblapack3:amd64 (3.12.0-3build2) ...
121s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
121s Setting up gettext (0.22.5-2) ...
121s Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-2ubuntu7) ...
121s Setting up nettle-dev:amd64 (3.10-1) ...
121s Setting up python3-pytest (8.3.3-1) ...
121s Setting up libaec-dev:amd64 (1.1.3-1) ...
121s Setting up libpython3.12-dev:amd64 (3.12.7-3) ...
121s Setting up pkgconf:amd64 (1.8.1-4) ...
121s Setting up intltool-debian (0.35.0+20060710.6) ...
121s Setting up libtmglib3:amd64 (3.12.0-3build2) ...
121s Setting up python3.12-dev (3.12.7-3) ...
121s Setting up cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ...
121s Setting up libssh2-1-dev:amd64 (1.11.1-1) ...
121s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ...
123s Setting up libjs-sphinxdoc (7.4.7-4) ...
123s Setting up cpp-14 (14.2.0-8ubuntu1) ...
123s Setting up dh-strip-nondeterminism (1.14.0-1) ...
123s Setting up python3-hdmedians (0.14.2-5.1build2) ...
123s Setting up liblapacke:amd64 (3.12.0-3build2) ...
123s Setting up libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ...
123s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ...
123s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ...
123s Setting up libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ...
123s Setting up python3-statsmodels-lib:amd64 (0.14.4+dfsg-1build1) ...
123s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ...
123s Setting up cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ...
123s Setting up libgnutls28-dev:amd64 (3.8.8-2ubuntu1) ...
123s Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ...
123s Setting up libnghttp2-dev:amd64 (1.64.0-1) ...
123s Setting up python3-scipy (1.13.1-5ubuntu1) ...
125s Setting up libpython3-dev:amd64 (3.12.6-0ubuntu1) ...
125s Setting up po-debconf (1.0.21+nmu1) ...
125s Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-5ubuntu1) ...
125s Setting up libhdf5-cpp-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ...
125s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ...
125s Setting up python3-h5py-serial (3.11.0-8ubuntu1) ...
126s Setting up libhdf5-fortran-102t64:amd64 (1.10.10+repack-4ubuntu3) ...
126s Setting up python3-patsy (1.0.1-1) ...
126s Setting up python3-pandas (2.2.3+dfsg-5ubuntu1) ...
129s Setting up libpython3-all-dev:amd64 (3.12.6-0ubuntu1) ...
129s Setting up python3-dev (3.12.6-0ubuntu1) ...
129s Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2build7) ...
129s Setting up python3-h5py (3.11.0-8ubuntu1) ...
129s Setting up python3-statsmodels (0.14.4+dfsg-1build1) ...
131s Setting up cpp (4:14.1.0-2ubuntu1) ...
131s Setting up gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ...
131s Setting up libhdf5-hl-cpp-100t64:amd64 (1.10.10+repack-4ubuntu3) ...
131s Setting up python3-all-dev (3.12.6-0ubuntu1) ...
132s Setting up gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ...
132s Setting up libssu0:amd64 (1.4-3build2) ...
132s Setting up libhdf5-hl-fortran-100t64:amd64 (1.10.10+repack-4ubuntu3) ...
132s Setting up gcc-14 (14.2.0-8ubuntu1) ...
132s Setting up python3-biom-format (2.1.16-1) ...
132s Setting up libcurl4-openssl-dev:amd64 (8.9.1-2ubuntu2) ...
132s Setting up python3-skbio (0.6.2-3) ...
132s Setting up libhdf5-dev (1.10.10+repack-4ubuntu3) ...
132s update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
132s Setting up g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ...
132s Setting up g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ...
132s Setting up g++-14 (14.2.0-8ubuntu1) ...
132s Setting up python3-iow (1.0.7-1) ...
132s Setting up libssu-dev:amd64 (1.4-3build2) ...
132s Setting up libtool (2.4.7-8) ...
132s Setting up gcc (4:14.1.0-2ubuntu1) ...
132s Setting up python3-unifrac (1.3-4) ...
132s Setting up dh-autoreconf (20) ...
132s Setting up g++ (4:14.1.0-2ubuntu1) ...
132s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
132s Setting up build-essential (12.10ubuntu1) ...
132s Setting up debhelper (13.20ubuntu1) ...
132s Setting up dh-exec (0.30) ...
132s Setting up pybuild-plugin-autopkgtest (6.20241024) ...
132s Setting up autopkgtest-satdep (0) ...
132s Processing triggers for man-db (2.13.0-1) ...
133s Processing triggers for install-info (7.1.1-1) ...
134s Processing triggers for libc-bin (2.40-1ubuntu3) ...
138s (Reading database ... 87183 files and directories currently installed.)
138s Removing autopkgtest-satdep (0) ...
138s autopkgtest [19:50:23]: test pybuild-autopkgtest: pybuild-autopkgtest
138s autopkgtest [19:50:23]: test pybuild-autopkgtest: [-----------------------
139s pybuild-autopkgtest
139s I: pybuild base:311: cd /tmp/autopkgtest.oJgFwt/autopkgtest_tmp/build; python3.12 -m pytest --pyargs unifrac
140s ============================= test session starts ==============================
140s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0
140s rootdir: /tmp/autopkgtest.oJgFwt/autopkgtest_tmp/build
140s plugins: typeguard-4.4.1
140s collected 49 items
140s 
144s tests/test_api.py ........................................               [ 81%]
144s tests/test_methods.py .........                                          [100%]
144s 
144s =============================== warnings summary ===============================
144s ../../../../usr/lib/python3/dist-packages/unifrac/__init__.py:9
144s   /usr/lib/python3/dist-packages/unifrac/__init__.py:9: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
144s     import pkg_resources
144s 
144s tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_root_not_observed
144s   /usr/lib/python3/dist-packages/unifrac/tests/test_api.py:814: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]`
144s     self.assertAlmostEqual(actual[0], expected)
144s 
144s tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_root_not_observed
144s   /usr/lib/python3/dist-packages/unifrac/tests/test_api.py:820: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]`
144s     self.assertAlmostEqual(actual[0], expected)
144s 
144s tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_zero_branches_omitted
144s   /usr/lib/python3/dist-packages/unifrac/tests/test_api.py:711: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]`
144s     self.assertAlmostEqual(actual[0], expected)
144s 
144s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
144s ======================== 49 passed, 4 warnings in 5.10s ========================
145s autopkgtest [19:50:30]: test pybuild-autopkgtest: -----------------------]
145s pybuild-autopkgtest  PASS
145s autopkgtest [19:50:30]: test pybuild-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
146s autopkgtest [19:50:31]: @@@@@@@@@@@@@@@@@@@@ summary
146s pybuild-autopkgtest  PASS
157s nova [W] Skipping flock for amd64
157s Creating nova instance adt-plucky-amd64-unifrac-20241118-194805-juju-7f2275-prod-proposed-migration-environment-15-ea844a5b-dbaa-4c15-9eb1-dd4ad30a1e35 from image adt/ubuntu-plucky-amd64-server-20241117.img (UUID 63768d6e-10e4-41f6-a5bf-8295c4d8ad4b)...