0s autopkgtest [02:43:59]: starting date and time: 2024-11-15 02:43:59+0000 0s autopkgtest [02:43:59]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [02:43:59]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.f7d9y40n/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade unifrac --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-16.secgroup --name adt-plucky-amd64-unifrac-20241115-024359-juju-7f2275-prod-proposed-migration-environment-15-a3895cb3-04a5-4c4b-b825-61c8a6936838 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 44s autopkgtest [02:44:43]: testbed dpkg architecture: amd64 44s autopkgtest [02:44:43]: testbed apt version: 2.9.8 44s autopkgtest [02:44:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup 45s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 45s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 45s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1030 kB] 45s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 45s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 45s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [101 kB] 45s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [166 kB] 45s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 45s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [800 kB] 45s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [293 kB] 45s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [740 B] 45s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9128 B] 46s Fetched 2631 kB in 1s (2862 kB/s) 46s Reading package lists... 48s Reading package lists... 48s Building dependency tree... 48s Reading state information... 48s Calculating upgrade... 49s The following NEW packages will be installed: 49s python3.13-gdbm 49s The following packages will be upgraded: 49s firmware-sof-signed libcap-ng0 libexpat1 libpython3-stdlib lxd-installer 49s man-db pastebinit python3 python3-gdbm python3-minimal python3-systemd 49s xfsprogs 49s 12 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 49s Need to get 9638 kB of archives. 49s After this operation, 542 kB of additional disk space will be used. 49s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 49s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 49s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 49s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 firmware-sof-signed all 2024.06-1ubuntu2 [7083 kB] 49s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-3build1 [15.6 kB] 49s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libexpat1 amd64 2.6.4-1 [94.9 kB] 49s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 man-db amd64 2.13.0-1 [1352 kB] 49s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 49s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 49s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 lxd-installer all 9 [5084 B] 49s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 pastebinit all 1.7.1-1 [14.9 kB] 49s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build5 [45.7 kB] 49s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 xfsprogs amd64 6.8.0-2.2ubuntu2 [926 kB] 50s Preconfiguring packages ... 50s Fetched 9638 kB in 1s (11.8 MB/s) 50s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 50s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 50s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 50s Setting up python3-minimal (3.12.7-1) ... 50s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 50s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 50s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 50s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 50s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 50s Preparing to unpack .../firmware-sof-signed_2024.06-1ubuntu2_all.deb ... 50s Unpacking firmware-sof-signed (2024.06-1ubuntu2) over (2024.06-1ubuntu1) ... 50s Preparing to unpack .../libcap-ng0_0.8.5-3build1_amd64.deb ... 50s Unpacking libcap-ng0:amd64 (0.8.5-3build1) over (0.8.5-1) ... 50s Setting up libcap-ng0:amd64 (0.8.5-3build1) ... 50s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75568 files and directories currently installed.) 50s Preparing to unpack .../0-libexpat1_2.6.4-1_amd64.deb ... 50s Unpacking libexpat1:amd64 (2.6.4-1) over (2.6.2-2) ... 50s Preparing to unpack .../1-man-db_2.13.0-1_amd64.deb ... 50s Unpacking man-db (2.13.0-1) over (2.12.1-3) ... 51s Selecting previously unselected package python3.13-gdbm. 51s Preparing to unpack .../2-python3.13-gdbm_3.13.0-2_amd64.deb ... 51s Unpacking python3.13-gdbm (3.13.0-2) ... 51s Preparing to unpack .../3-python3-gdbm_3.12.7-1_amd64.deb ... 51s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 51s Preparing to unpack .../4-lxd-installer_9_all.deb ... 51s Unpacking lxd-installer (9) over (8) ... 51s Preparing to unpack .../5-pastebinit_1.7.1-1_all.deb ... 51s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ... 51s Preparing to unpack .../6-python3-systemd_235-1build5_amd64.deb ... 51s Unpacking python3-systemd (235-1build5) over (235-1build4) ... 51s Preparing to unpack .../7-xfsprogs_6.8.0-2.2ubuntu2_amd64.deb ... 51s Unpacking xfsprogs (6.8.0-2.2ubuntu2) over (6.8.0-2.2ubuntu1) ... 51s Setting up libexpat1:amd64 (2.6.4-1) ... 51s Setting up firmware-sof-signed (2024.06-1ubuntu2) ... 51s Setting up man-db (2.13.0-1) ... 51s Updating database of manual pages ... 53s man-db.service is a disabled or a static unit not running, not starting it. 53s Setting up lxd-installer (9) ... 53s Setting up python3.13-gdbm (3.13.0-2) ... 53s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 53s Setting up python3 (3.12.7-1) ... 53s Setting up xfsprogs (6.8.0-2.2ubuntu2) ... 53s update-initramfs: deferring update (trigger activated) 53s Setting up python3-systemd (235-1build5) ... 54s Setting up python3-gdbm:amd64 (3.12.7-1) ... 54s Setting up pastebinit (1.7.1-1) ... 54s Processing triggers for libc-bin (2.40-1ubuntu3) ... 54s Processing triggers for initramfs-tools (0.142ubuntu34) ... 54s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic 54s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 62s Reading package lists... 62s Building dependency tree... 62s Reading state information... 62s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 63s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 63s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 63s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 63s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 64s Reading package lists... 64s Reading package lists... 64s Building dependency tree... 64s Reading state information... 64s Calculating upgrade... 64s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 64s Reading package lists... 65s Building dependency tree... 65s Reading state information... 65s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 65s autopkgtest [02:45:04]: rebooting testbed after setup commands that affected boot 69s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 83s autopkgtest [02:45:22]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 86s autopkgtest [02:45:25]: @@@@@@@@@@@@@@@@@@@@ apt-source unifrac 88s Get:1 http://ftpmaster.internal/ubuntu plucky/universe unifrac 1.3-4 (dsc) [2198 B] 88s Get:2 http://ftpmaster.internal/ubuntu plucky/universe unifrac 1.3-4 (tar) [65.9 kB] 88s Get:3 http://ftpmaster.internal/ubuntu plucky/universe unifrac 1.3-4 (diff) [7788 B] 88s gpgv: Signature made Sun Sep 8 11:06:50 2024 UTC 88s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 88s gpgv: Can't check signature: No public key 88s dpkg-source: warning: cannot verify inline signature for ./unifrac_1.3-4.dsc: no acceptable signature found 88s autopkgtest [02:45:27]: testing package unifrac version 1.3-4 88s autopkgtest [02:45:27]: build not needed 89s autopkgtest [02:45:28]: test pybuild-autopkgtest: preparing testbed 90s Reading package lists... 90s Building dependency tree... 90s Reading state information... 90s Starting pkgProblemResolver with broken count: 0 90s Starting 2 pkgProblemResolver with broken count: 0 90s Done 91s The following additional packages will be installed: 91s autoconf automake autopoint autotools-dev build-essential cpp cpp-14 91s cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cython3 debhelper debugedit 91s dh-autoreconf dh-exec dh-python dh-strip-nondeterminism dwz g++ g++-14 91s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 91s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext hdf5-helpers 91s intltool-debian libaec-dev libaec0 libarchive-zip-perl libasan8 libblas3 91s libbrotli-dev libcc1-0 libcurl4-openssl-dev libdebhelper-perl 91s libevent-2.1-7t64 libexpat1-dev libfile-stripnondeterminism-perl 91s libgcc-14-dev libgfortran5 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 91s libgnutls-openssl27t64 libgnutls28-dev libgomp1 libhdf5-103-1t64 91s libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64 libhdf5-hl-100t64 91s libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libhwasan0 libidn2-dev 91s libisl23 libitm1 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 91s libjpeg8-dev libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 91s liblapacke liblbfgsb0 liblsan0 liblzf1 libmpc3 libnghttp2-dev libp11-kit-dev 91s libpkgconf3 libpsl-dev libpython3-all-dev libpython3-dev libpython3.12-dev 91s libpython3.13 libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib 91s libquadmath0 librtmp-dev libssh2-1-dev libssl-dev libssu-dev libssu0 libssw0 91s libstdc++-14-dev libsz2 libtasn1-6-dev libtmglib3 libtool libtsan2 libubsan1 91s libunbound8 libzstd-dev m4 nettle-dev pkgconf pkgconf-bin po-debconf 91s pybuild-plugin-autopkgtest python3-all python3-all-dev python3-biom-format 91s python3-click python3-colorama python3-dateutil python3-decorator 91s python3-dev python3-h5py python3-h5py-serial python3-hdmedians 91s python3-iniconfig python3-iow python3-natsort python3-numpy 91s python3-packaging python3-pandas python3-pandas-lib python3-patsy 91s python3-pluggy python3-pytest python3-scipy python3-six python3-skbio 91s python3-statsmodels python3-statsmodels-lib python3-tz python3-unifrac 91s python3.12-dev python3.13 python3.13-dev python3.13-minimal zlib1g-dev 91s Suggested packages: 91s autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales 91s cpp-14-doc cython-doc dh-make flit python3-build python3-installer 91s python3-wheel g++-multilib g++-14-multilib gcc-14-doc gcc-multilib 91s manpages-dev flex bison gdb gcc-doc gcc-14-multilib gdb-x86-64-linux-gnu 91s gettext-doc libasprintf-dev libgettextpo-dev libcurl4-doc libidn-dev 91s libkrb5-dev libldap2-dev gmp-doc libgmp10-doc libmpfr-dev dns-root-data 91s gnutls-bin gnutls-doc libhdf5-doc libnghttp2-doc p11-kit-doc libssl-doc 91s libstdc++-14-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc 91s libmail-box-perl python-biom-format-doc python-h5py-doc python-natsort-doc 91s gfortran python-numpy-doc python-pandas-doc python-patsy-doc 91s python-scipy-doc python-skbio-doc python-statsmodels-doc python3.13-venv 91s python3.13-doc binfmt-support 91s Recommended packages: 91s libarchive-cpio-perl javascript-common libtasn1-doc libltdl-dev 91s libmail-sendmail-perl python3-matplotlib python3-bottleneck python3-numexpr 91s python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml 91s python3-tables python3-numba python3-pil python3-joblib python3-cvxopt 91s The following NEW packages will be installed: 91s autoconf automake autopkgtest-satdep autopoint autotools-dev build-essential 91s cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cython3 debhelper 91s debugedit dh-autoreconf dh-exec dh-python dh-strip-nondeterminism dwz g++ 91s g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 91s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext hdf5-helpers 91s intltool-debian libaec-dev libaec0 libarchive-zip-perl libasan8 libblas3 91s libbrotli-dev libcc1-0 libcurl4-openssl-dev libdebhelper-perl 91s libevent-2.1-7t64 libexpat1-dev libfile-stripnondeterminism-perl 91s libgcc-14-dev libgfortran5 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 91s libgnutls-openssl27t64 libgnutls28-dev libgomp1 libhdf5-103-1t64 91s libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64 libhdf5-hl-100t64 91s libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libhwasan0 libidn2-dev 91s libisl23 libitm1 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 91s libjpeg8-dev libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 91s liblapacke liblbfgsb0 liblsan0 liblzf1 libmpc3 libnghttp2-dev libp11-kit-dev 91s libpkgconf3 libpsl-dev libpython3-all-dev libpython3-dev libpython3.12-dev 91s libpython3.13 libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib 91s libquadmath0 librtmp-dev libssh2-1-dev libssl-dev libssu-dev libssu0 libssw0 91s libstdc++-14-dev libsz2 libtasn1-6-dev libtmglib3 libtool libtsan2 libubsan1 91s libunbound8 libzstd-dev m4 nettle-dev pkgconf pkgconf-bin po-debconf 91s pybuild-plugin-autopkgtest python3-all python3-all-dev python3-biom-format 91s python3-click python3-colorama python3-dateutil python3-decorator 91s python3-dev python3-h5py python3-h5py-serial python3-hdmedians 91s python3-iniconfig python3-iow python3-natsort python3-numpy 91s python3-packaging python3-pandas python3-pandas-lib python3-patsy 91s python3-pluggy python3-pytest python3-scipy python3-six python3-skbio 91s python3-statsmodels python3-statsmodels-lib python3-tz python3-unifrac 91s python3.12-dev python3.13 python3.13-dev python3.13-minimal zlib1g-dev 91s 0 upgraded, 140 newly installed, 0 to remove and 0 not upgraded. 91s Need to get 155 MB/155 MB of archives. 91s After this operation, 614 MB of additional disk space will be used. 91s Get:1 /tmp/autopkgtest.SO2lbC/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [864 B] 91s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 91s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 91s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 m4 amd64 1.4.19-4build1 [244 kB] 91s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 autoconf all 2.72-3 [382 kB] 91s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 autotools-dev all 20220109.1 [44.9 kB] 91s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 91s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 autopoint all 0.22.5-2 [616 kB] 91s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 91s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 91s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [11.9 MB] 92s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-8ubuntu1 [1030 B] 92s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 92s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 92s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-8ubuntu1 [47.6 kB] 92s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 92s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-8ubuntu1 [29.1 kB] 92s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-8ubuntu1 [2998 kB] 92s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-8ubuntu1 [1317 kB] 92s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-8ubuntu1 [2732 kB] 92s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-8ubuntu1 [1177 kB] 92s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-8ubuntu1 [1634 kB] 92s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-8ubuntu1 [153 kB] 92s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-8ubuntu1 [2814 kB] 92s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [23.3 MB] 93s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-8ubuntu1 [528 kB] 93s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 93s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 93s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-8ubuntu1 [2504 kB] 93s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [13.3 MB] 93s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-8ubuntu1 [19.9 kB] 93s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 93s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 93s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 93s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 cython3 amd64 3.0.11+dfsg-1ubuntu2 [3368 kB] 93s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 93s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libtool all 2.4.7-7build1 [166 kB] 93s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-autoreconf all 20 [16.1 kB] 93s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] 93s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 93s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-strip-nondeterminism all 1.14.0-1 [5058 B] 93s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 debugedit amd64 1:5.1-1 [46.9 kB] 93s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 dwz amd64 0.15-1build6 [115 kB] 93s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 gettext amd64 0.22.5-2 [948 kB] 93s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 93s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] 93s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 debhelper all 13.20ubuntu1 [893 kB] 93s Get:48 http://ftpmaster.internal/ubuntu plucky/universe amd64 dh-python all 6.20241024 [112 kB] 93s Get:49 http://ftpmaster.internal/ubuntu plucky/universe amd64 hdf5-helpers amd64 1.10.10+repack-4ubuntu3 [16.2 kB] 93s Get:50 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 93s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 93s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli-dev amd64 1.1.0-2build2 [353 kB] 93s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libidn2-dev amd64 2.3.7-2build2 [120 kB] 93s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 93s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 93s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 93s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libnghttp2-dev amd64 1.64.0-1 [123 kB] 93s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libpsl-dev amd64 0.21.2-1.1build1 [76.4 kB] 93s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-2ubuntu7 [10.0 kB] 93s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-2ubuntu7 [341 kB] 93s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10 [144 kB] 93s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libunbound8 amd64 1.20.0-1ubuntu2.1 [447 kB] 93s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls-dane0t64 amd64 3.8.8-2ubuntu1 [24.3 kB] 93s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls-openssl27t64 amd64 3.8.8-2ubuntu1 [24.5 kB] 94s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libp11-kit-dev amd64 0.25.5-2ubuntu1 [22.7 kB] 94s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libtasn1-6-dev amd64 4.19.0-3build1 [90.5 kB] 94s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 nettle-dev amd64 3.10-1 [1172 kB] 94s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls28-dev amd64 3.8.8-2ubuntu1 [1108 kB] 94s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 94s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2build7 [66.7 kB] 94s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libssl-dev amd64 3.3.1-2ubuntu2 [2686 kB] 94s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libssh2-1-dev amd64 1.11.1-1 [292 kB] 94s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libzstd-dev amd64 1.5.6+dfsg-1 [371 kB] 94s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4-openssl-dev amd64 8.9.1-2ubuntu2 [483 kB] 94s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libexpat1-dev amd64 2.6.4-1 [148 kB] 94s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 94s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 94s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1280 kB] 94s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-cpp-103-1t64 amd64 1.10.10+repack-4ubuntu3 [124 kB] 94s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-fortran-102t64 amd64 1.10.10+repack-4ubuntu3 [84.1 kB] 94s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4ubuntu3 [56.6 kB] 94s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-fortran-100t64 amd64 1.10.10+repack-4ubuntu3 [31.3 kB] 94s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-cpp-100t64 amd64 1.10.10+repack-4ubuntu3 [11.2 kB] 94s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu2 [150 kB] 94s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu2 [295 kB] 94s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 94s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 94s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 94s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec-dev amd64 1.1.3-1 [19.8 kB] 94s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-dev amd64 1.10.10+repack-4ubuntu3 [2784 kB] 94s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 94s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 94s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 94s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 94s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libtmglib3 amd64 3.12.0-3build2 [142 kB] 94s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapacke amd64 3.12.0-3build2 [407 kB] 94s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 94s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 94s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.12-dev amd64 3.12.7-3 [5699 kB] 94s Get:100 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-dev amd64 3.12.7-1 [10.3 kB] 94s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 94s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.0-2 [2321 kB] 94s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-dev amd64 3.13.0-2 [5488 kB] 95s Get:104 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-all-dev amd64 3.12.7-1 [916 B] 95s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 libssu0 amd64 1.4-3build2 [163 kB] 95s Get:106 http://ftpmaster.internal/ubuntu plucky/universe amd64 libssu-dev amd64 1.4-3build2 [8294 B] 95s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 libssw0 amd64 1.1-15 [22.5 kB] 95s Get:108 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-autopkgtest all 6.20241024 [1746 B] 95s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 95s Get:110 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 95s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-dev amd64 3.12.7-3 [505 kB] 95s Get:112 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-dev amd64 3.12.7-1 [26.7 kB] 95s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-dev amd64 3.13.0-2 [507 kB] 95s Get:114 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all-dev amd64 3.12.7-1 [914 B] 95s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 95s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py-serial amd64 3.11.0-5ubuntu1 [1107 kB] 95s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py all 3.11.0-5ubuntu1 [7974 B] 95s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-colorama all 0.4.6-4 [32.1 kB] 95s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-click all 8.1.7-2 [79.5 kB] 95s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.16.0-7 [13.1 kB] 95s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 95s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2024.1-2 [31.4 kB] 95s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-5 [5087 kB] 95s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas all 2.2.3+dfsg-5 [3112 kB] 95s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 95s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.13.1-5 [18.2 MB] 96s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-biom-format amd64 2.1.16-1 [141 kB] 96s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-hdmedians amd64 0.14.2-5.1build1 [124 kB] 96s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 96s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-natsort all 8.0.2-2 [33.8 kB] 96s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 96s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-patsy all 0.5.6-1 [181 kB] 96s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-statsmodels-lib amd64 0.14.4+dfsg-1 [1783 kB] 96s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-statsmodels all 0.14.4+dfsg-1 [5010 kB] 96s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-skbio amd64 0.6.2-3 [1407 kB] 96s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iow amd64 1.0.7-1 [448 kB] 96s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 96s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 96s Get:139 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-unifrac amd64 1.3-4 [161 kB] 96s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-exec amd64 0.30 [25.6 kB] 97s Fetched 155 MB in 6s (28.0 MB/s) 97s Selecting previously unselected package libpython3.13-minimal:amd64. 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75581 files and directories currently installed.) 97s Preparing to unpack .../000-libpython3.13-minimal_3.13.0-2_amd64.deb ... 97s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 97s Selecting previously unselected package python3.13-minimal. 97s Preparing to unpack .../001-python3.13-minimal_3.13.0-2_amd64.deb ... 97s Unpacking python3.13-minimal (3.13.0-2) ... 97s Selecting previously unselected package m4. 97s Preparing to unpack .../002-m4_1.4.19-4build1_amd64.deb ... 97s Unpacking m4 (1.4.19-4build1) ... 97s Selecting previously unselected package autoconf. 97s Preparing to unpack .../003-autoconf_2.72-3_all.deb ... 97s Unpacking autoconf (2.72-3) ... 97s Selecting previously unselected package autotools-dev. 97s Preparing to unpack .../004-autotools-dev_20220109.1_all.deb ... 97s Unpacking autotools-dev (20220109.1) ... 97s Selecting previously unselected package automake. 97s Preparing to unpack .../005-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 97s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 97s Selecting previously unselected package autopoint. 97s Preparing to unpack .../006-autopoint_0.22.5-2_all.deb ... 97s Unpacking autopoint (0.22.5-2) ... 97s Selecting previously unselected package libisl23:amd64. 97s Preparing to unpack .../007-libisl23_0.27-1_amd64.deb ... 97s Unpacking libisl23:amd64 (0.27-1) ... 97s Selecting previously unselected package libmpc3:amd64. 97s Preparing to unpack .../008-libmpc3_1.3.1-1build2_amd64.deb ... 97s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 97s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 97s Preparing to unpack .../009-cpp-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 97s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 97s Selecting previously unselected package cpp-14. 97s Preparing to unpack .../010-cpp-14_14.2.0-8ubuntu1_amd64.deb ... 97s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 97s Selecting previously unselected package cpp-x86-64-linux-gnu. 97s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 97s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 97s Selecting previously unselected package cpp. 97s Preparing to unpack .../012-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ... 97s Unpacking cpp (4:14.1.0-2ubuntu1) ... 97s Selecting previously unselected package libcc1-0:amd64. 97s Preparing to unpack .../013-libcc1-0_14.2.0-8ubuntu1_amd64.deb ... 97s Unpacking libcc1-0:amd64 (14.2.0-8ubuntu1) ... 97s Selecting previously unselected package libgomp1:amd64. 97s Preparing to unpack .../014-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 97s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 97s Selecting previously unselected package libitm1:amd64. 97s Preparing to unpack .../015-libitm1_14.2.0-8ubuntu1_amd64.deb ... 97s Unpacking libitm1:amd64 (14.2.0-8ubuntu1) ... 97s Selecting previously unselected package libasan8:amd64. 97s Preparing to unpack .../016-libasan8_14.2.0-8ubuntu1_amd64.deb ... 97s Unpacking libasan8:amd64 (14.2.0-8ubuntu1) ... 98s Selecting previously unselected package liblsan0:amd64. 98s Preparing to unpack .../017-liblsan0_14.2.0-8ubuntu1_amd64.deb ... 98s Unpacking liblsan0:amd64 (14.2.0-8ubuntu1) ... 98s Selecting previously unselected package libtsan2:amd64. 98s Preparing to unpack .../018-libtsan2_14.2.0-8ubuntu1_amd64.deb ... 98s Unpacking libtsan2:amd64 (14.2.0-8ubuntu1) ... 98s Selecting previously unselected package libubsan1:amd64. 98s Preparing to unpack .../019-libubsan1_14.2.0-8ubuntu1_amd64.deb ... 98s Unpacking libubsan1:amd64 (14.2.0-8ubuntu1) ... 98s Selecting previously unselected package libhwasan0:amd64. 98s Preparing to unpack .../020-libhwasan0_14.2.0-8ubuntu1_amd64.deb ... 98s Unpacking libhwasan0:amd64 (14.2.0-8ubuntu1) ... 98s Selecting previously unselected package libquadmath0:amd64. 98s Preparing to unpack .../021-libquadmath0_14.2.0-8ubuntu1_amd64.deb ... 98s Unpacking libquadmath0:amd64 (14.2.0-8ubuntu1) ... 98s Selecting previously unselected package libgcc-14-dev:amd64. 98s Preparing to unpack .../022-libgcc-14-dev_14.2.0-8ubuntu1_amd64.deb ... 98s Unpacking libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 98s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 98s Preparing to unpack .../023-gcc-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 98s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 98s Selecting previously unselected package gcc-14. 98s Preparing to unpack .../024-gcc-14_14.2.0-8ubuntu1_amd64.deb ... 98s Unpacking gcc-14 (14.2.0-8ubuntu1) ... 98s Selecting previously unselected package gcc-x86-64-linux-gnu. 98s Preparing to unpack .../025-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 98s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 98s Selecting previously unselected package gcc. 98s Preparing to unpack .../026-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ... 98s Unpacking gcc (4:14.1.0-2ubuntu1) ... 98s Selecting previously unselected package libstdc++-14-dev:amd64. 98s Preparing to unpack .../027-libstdc++-14-dev_14.2.0-8ubuntu1_amd64.deb ... 98s Unpacking libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 98s Selecting previously unselected package g++-14-x86-64-linux-gnu. 98s Preparing to unpack .../028-g++-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 98s Unpacking g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 99s Selecting previously unselected package g++-14. 99s Preparing to unpack .../029-g++-14_14.2.0-8ubuntu1_amd64.deb ... 99s Unpacking g++-14 (14.2.0-8ubuntu1) ... 99s Selecting previously unselected package g++-x86-64-linux-gnu. 99s Preparing to unpack .../030-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 99s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 99s Selecting previously unselected package g++. 99s Preparing to unpack .../031-g++_4%3a14.1.0-2ubuntu1_amd64.deb ... 99s Unpacking g++ (4:14.1.0-2ubuntu1) ... 99s Selecting previously unselected package build-essential. 99s Preparing to unpack .../032-build-essential_12.10ubuntu1_amd64.deb ... 99s Unpacking build-essential (12.10ubuntu1) ... 99s Selecting previously unselected package cython3. 99s Preparing to unpack .../033-cython3_3.0.11+dfsg-1ubuntu2_amd64.deb ... 99s Unpacking cython3 (3.0.11+dfsg-1ubuntu2) ... 99s Selecting previously unselected package libdebhelper-perl. 99s Preparing to unpack .../034-libdebhelper-perl_13.20ubuntu1_all.deb ... 99s Unpacking libdebhelper-perl 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package zlib1g-dev:amd64. 100s Preparing to unpack .../067-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 100s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 100s Selecting previously unselected package librtmp-dev:amd64. 100s Preparing to unpack .../068-librtmp-dev_2.4+20151223.gitfa8646d.1-2build7_amd64.deb ... 100s Unpacking librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2build7) ... 100s Selecting previously unselected package libssl-dev:amd64. 100s Preparing to unpack .../069-libssl-dev_3.3.1-2ubuntu2_amd64.deb ... 100s Unpacking libssl-dev:amd64 (3.3.1-2ubuntu2) ... 100s Selecting previously unselected package libssh2-1-dev:amd64. 100s Preparing to unpack .../070-libssh2-1-dev_1.11.1-1_amd64.deb ... 100s Unpacking libssh2-1-dev:amd64 (1.11.1-1) ... 100s Selecting previously unselected package libzstd-dev:amd64. 100s Preparing to unpack .../071-libzstd-dev_1.5.6+dfsg-1_amd64.deb ... 100s Unpacking libzstd-dev:amd64 (1.5.6+dfsg-1) ... 100s Selecting previously unselected package libcurl4-openssl-dev:amd64. 100s Preparing to unpack .../072-libcurl4-openssl-dev_8.9.1-2ubuntu2_amd64.deb ... 100s Unpacking libcurl4-openssl-dev:amd64 (8.9.1-2ubuntu2) ... 100s Selecting previously unselected package libexpat1-dev:amd64. 100s Preparing to unpack .../073-libexpat1-dev_2.6.4-1_amd64.deb ... 100s Unpacking libexpat1-dev:amd64 (2.6.4-1) ... 100s Selecting previously unselected package libgfortran5:amd64. 100s Preparing to unpack .../074-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 100s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 100s Selecting previously unselected package libsz2:amd64. 100s Preparing to unpack .../075-libsz2_1.1.3-1_amd64.deb ... 100s Unpacking libsz2:amd64 (1.1.3-1) ... 100s Selecting previously unselected package libhdf5-103-1t64:amd64. 100s Preparing to unpack .../076-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ... 100s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 100s Selecting previously unselected package libhdf5-cpp-103-1t64:amd64. 100s Preparing to unpack .../077-libhdf5-cpp-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ... 100s Unpacking libhdf5-cpp-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 100s Selecting previously unselected package libhdf5-fortran-102t64:amd64. 100s Preparing to unpack .../078-libhdf5-fortran-102t64_1.10.10+repack-4ubuntu3_amd64.deb ... 100s Unpacking libhdf5-fortran-102t64:amd64 (1.10.10+repack-4ubuntu3) ... 100s Selecting previously unselected package libhdf5-hl-100t64:amd64. 100s Preparing to unpack .../079-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_amd64.deb ... 100s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 100s Selecting previously unselected package libhdf5-hl-fortran-100t64:amd64. 100s Preparing to unpack .../080-libhdf5-hl-fortran-100t64_1.10.10+repack-4ubuntu3_amd64.deb ... 100s Unpacking libhdf5-hl-fortran-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 100s Selecting previously unselected package 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previously unselected package libjpeg-dev:amd64. 100s Preparing to unpack .../086-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 100s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 100s Selecting previously unselected package libaec-dev:amd64. 100s Preparing to unpack .../087-libaec-dev_1.1.3-1_amd64.deb ... 100s Unpacking libaec-dev:amd64 (1.1.3-1) ... 100s Selecting previously unselected package libhdf5-dev. 100s Preparing to unpack .../088-libhdf5-dev_1.10.10+repack-4ubuntu3_amd64.deb ... 100s Unpacking libhdf5-dev (1.10.10+repack-4ubuntu3) ... 100s Selecting previously unselected package libjs-jquery. 100s Preparing to unpack .../089-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 100s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 100s Selecting previously unselected package libjs-underscore. 100s Preparing to unpack .../090-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 100s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 100s Selecting previously unselected package libjs-sphinxdoc. 100s Preparing to unpack .../091-libjs-sphinxdoc_7.4.7-4_all.deb ... 100s Unpacking libjs-sphinxdoc (7.4.7-4) ... 100s Selecting previously unselected package liblapack3:amd64. 100s Preparing to unpack .../092-liblapack3_3.12.0-3build2_amd64.deb ... 100s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 101s Selecting previously unselected package libtmglib3:amd64. 101s Preparing to unpack .../093-libtmglib3_3.12.0-3build2_amd64.deb ... 101s Unpacking libtmglib3:amd64 (3.12.0-3build2) ... 101s Selecting previously unselected package liblapacke:amd64. 101s Preparing to unpack .../094-liblapacke_3.12.0-3build2_amd64.deb ... 101s Unpacking liblapacke:amd64 (3.12.0-3build2) ... 101s Selecting previously unselected package liblbfgsb0:amd64. 101s Preparing to unpack .../095-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 101s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 101s Selecting previously unselected package liblzf1:amd64. 101s Preparing to unpack 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python3-all-dev (3.12.7-1) ... 101s Selecting previously unselected package python3-numpy. 101s Preparing to unpack .../113-python3-numpy_1%3a1.26.4+ds-11build1_amd64.deb ... 101s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 102s Selecting previously unselected package python3-h5py-serial. 102s Preparing to unpack .../114-python3-h5py-serial_3.11.0-5ubuntu1_amd64.deb ... 102s Unpacking python3-h5py-serial (3.11.0-5ubuntu1) ... 102s Selecting previously unselected package python3-h5py. 102s Preparing to unpack .../115-python3-h5py_3.11.0-5ubuntu1_all.deb ... 102s Unpacking python3-h5py (3.11.0-5ubuntu1) ... 102s Selecting previously unselected package python3-colorama. 102s Preparing to unpack .../116-python3-colorama_0.4.6-4_all.deb ... 102s Unpacking python3-colorama (0.4.6-4) ... 102s Selecting previously unselected package python3-click. 102s Preparing to unpack .../117-python3-click_8.1.7-2_all.deb ... 102s Unpacking python3-click (8.1.7-2) ... 102s Selecting previously unselected package python3-six. 102s Preparing to unpack .../118-python3-six_1.16.0-7_all.deb ... 102s Unpacking python3-six (1.16.0-7) ... 102s Selecting previously unselected package python3-dateutil. 102s Preparing to unpack .../119-python3-dateutil_2.9.0-2_all.deb ... 102s Unpacking python3-dateutil (2.9.0-2) ... 102s Selecting previously unselected package python3-tz. 102s Preparing to unpack .../120-python3-tz_2024.1-2_all.deb ... 102s Unpacking python3-tz (2024.1-2) ... 102s Selecting previously unselected package python3-pandas-lib:amd64. 102s Preparing to unpack .../121-python3-pandas-lib_2.2.3+dfsg-5_amd64.deb ... 102s Unpacking python3-pandas-lib:amd64 (2.2.3+dfsg-5) ... 102s Selecting previously unselected package python3-pandas. 102s Preparing to unpack .../122-python3-pandas_2.2.3+dfsg-5_all.deb ... 102s Unpacking python3-pandas (2.2.3+dfsg-5) ... 102s Selecting previously unselected package python3-decorator. 102s Preparing to unpack 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pybuild-plugin-autopkgtest (6.20241024) ... 129s Setting up autopkgtest-satdep (0) ... 129s Processing triggers for systemd (256.5-2ubuntu4) ... 129s Processing triggers for man-db (2.13.0-1) ... 130s Processing triggers for install-info (7.1.1-1) ... 130s Processing triggers for libc-bin (2.40-1ubuntu3) ... 135s (Reading database ... 87961 files and directories currently installed.) 135s Removing autopkgtest-satdep (0) ... 135s autopkgtest [02:46:14]: test pybuild-autopkgtest: pybuild-autopkgtest 135s autopkgtest [02:46:14]: test pybuild-autopkgtest: [----------------------- 136s pybuild-autopkgtest 136s I: pybuild base:311: cd /tmp/autopkgtest.SO2lbC/autopkgtest_tmp/build; python3.13 -m pytest --pyargs unifrac 136s ============================= test session starts ============================== 136s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 136s rootdir: /tmp/autopkgtest.SO2lbC/autopkgtest_tmp/build 136s plugins: typeguard-4.4.1 136s collected 0 items / 2 errors 136s 136s ==================================== ERRORS ==================================== 136s ______________________ ERROR collecting tests/test_api.py ______________________ 136s ImportError while importing test module '/usr/lib/python3/dist-packages/unifrac/tests/test_api.py'. 136s Hint: make sure your test modules/packages have valid Python names. 136s Traceback: 136s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 136s from . import multiarray 136s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 136s from . import overrides 136s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 136s from numpy.core._multiarray_umath import ( 136s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 136s 136s During handling of the above exception, another exception occurred: 136s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 136s from numpy.__config__ import show as show_config 136s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 136s from numpy.core._multiarray_umath import ( 136s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 136s raise ImportError(msg) 136s E ImportError: 136s E 136s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 136s E 136s E Importing the numpy C-extensions failed. This error can happen for 136s E many reasons, often due to issues with your setup or how NumPy was 136s E installed. 136s E 136s E We have compiled some common reasons and troubleshooting tips at: 136s E 136s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 136s E 136s E Please note and check the following: 136s E 136s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 136s E * The NumPy version is: "1.26.4" 136s E 136s E and make sure that they are the versions you expect. 136s E Please carefully study the documentation linked above for further help. 136s E 136s E Original error was: No module named 'numpy.core._multiarray_umath' 136s 136s The above exception was the direct cause of the following exception: 136s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 136s return _bootstrap._gcd_import(name[level:], package, level) 136s /usr/lib/python3/dist-packages/unifrac/__init__.py:11: in 136s from unifrac._methods import (unweighted, 136s /usr/lib/python3/dist-packages/unifrac/_methods.py:13: in 136s import numpy as np 136s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 136s raise ImportError(msg) from e 136s E ImportError: Error importing numpy: you should not try to import numpy from 136s E its source directory; please exit the numpy source tree, and relaunch 136s E your python interpreter from there. 136s ____________________ ERROR collecting tests/test_methods.py ____________________ 136s ImportError while importing test module '/usr/lib/python3/dist-packages/unifrac/tests/test_methods.py'. 136s Hint: make sure your test modules/packages have valid Python names. 136s Traceback: 136s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 136s from . import multiarray 136s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 136s from . import overrides 136s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 136s from numpy.core._multiarray_umath import ( 136s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 136s 136s During handling of the above exception, another exception occurred: 136s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 136s from numpy.__config__ import show as show_config 136s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 136s from numpy.core._multiarray_umath import ( 136s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 136s raise ImportError(msg) 136s E ImportError: 136s E 136s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 136s E 136s E Importing the numpy C-extensions failed. This error can happen for 136s E many reasons, often due to issues with your setup or how NumPy was 136s E installed. 136s E 136s E We have compiled some common reasons and troubleshooting tips at: 136s E 136s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 136s E 136s E Please note and check the following: 136s E 136s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 136s E * The NumPy version is: "1.26.4" 136s E 136s E and make sure that they are the versions you expect. 136s E Please carefully study the documentation linked above for further help. 136s E 136s E Original error was: No module named 'numpy.core._multiarray_umath' 136s 136s The above exception was the direct cause of the following exception: 136s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 136s return _bootstrap._gcd_import(name[level:], package, level) 136s /usr/lib/python3/dist-packages/unifrac/__init__.py:11: in 136s from unifrac._methods import (unweighted, 136s /usr/lib/python3/dist-packages/unifrac/_methods.py:13: in 136s import numpy as np 136s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 136s raise ImportError(msg) from e 136s E ImportError: Error importing numpy: you should not try to import numpy from 136s E its source directory; please exit the numpy source tree, and relaunch 136s E your python interpreter from there. 136s =============================== warnings summary =============================== 136s ../../../../usr/lib/python3/dist-packages/unifrac/__init__.py:9 136s /usr/lib/python3/dist-packages/unifrac/__init__.py:9: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 136s import pkg_resources 136s 136s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 136s =========================== short test summary info ============================ 136s ERROR tests/test_api.py 136s ERROR tests/test_methods.py 136s !!!!!!!!!!!!!!!!!!! Interrupted: 2 errors during collection !!!!!!!!!!!!!!!!!!!! 136s ========================= 1 warning, 2 errors in 0.25s ========================= 136s E: pybuild pybuild:389: test: plugin distutils failed with: exit code=2: cd /tmp/autopkgtest.SO2lbC/autopkgtest_tmp/build; python3.13 -m pytest --pyargs unifrac 136s I: pybuild base:311: cd /tmp/autopkgtest.SO2lbC/autopkgtest_tmp/build; python3.12 -m pytest --pyargs unifrac 138s ============================= test session starts ============================== 138s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 138s rootdir: /tmp/autopkgtest.SO2lbC/autopkgtest_tmp/build 138s plugins: typeguard-4.4.1 138s collected 49 items 138s 141s tests/test_api.py ........................................ [ 81%] 141s tests/test_methods.py ......... [100%] 141s 141s =============================== warnings summary =============================== 141s ../../../../usr/lib/python3/dist-packages/unifrac/__init__.py:9 141s /usr/lib/python3/dist-packages/unifrac/__init__.py:9: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 141s import pkg_resources 141s 141s tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_root_not_observed 141s /usr/lib/python3/dist-packages/unifrac/tests/test_api.py:814: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 141s self.assertAlmostEqual(actual[0], expected) 141s 141s tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_root_not_observed 141s /usr/lib/python3/dist-packages/unifrac/tests/test_api.py:820: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 141s self.assertAlmostEqual(actual[0], expected) 141s 141s tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_zero_branches_omitted 141s /usr/lib/python3/dist-packages/unifrac/tests/test_api.py:711: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 141s self.assertAlmostEqual(actual[0], expected) 141s 141s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 141s ======================== 49 passed, 4 warnings in 4.83s ======================== 142s pybuild-autopkgtest: error: pybuild --autopkgtest --test-pytest -i python{version} -p "3.13 3.12" returned exit code 13 142s make: *** [/tmp/BFY1jIo8Ee/run:4: pybuild-autopkgtest] Error 25 142s pybuild-autopkgtest: error: /tmp/BFY1jIo8Ee/run pybuild-autopkgtest returned exit code 2 142s autopkgtest [02:46:21]: test pybuild-autopkgtest: -----------------------] 142s pybuild-autopkgtest FAIL non-zero exit status 25 142s autopkgtest [02:46:21]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 143s autopkgtest [02:46:22]: @@@@@@@@@@@@@@@@@@@@ summary 143s pybuild-autopkgtest FAIL non-zero exit status 25 155s nova [W] Skipping flock for amd64 155s Creating nova instance adt-plucky-amd64-unifrac-20241115-024359-juju-7f2275-prod-proposed-migration-environment-15-a3895cb3-04a5-4c4b-b825-61c8a6936838 from image adt/ubuntu-plucky-amd64-server-20241114.img (UUID 79d80331-8736-463c-82c6-8c9e13c0a4ca)...