0s autopkgtest [22:07:18]: starting date and time: 2025-03-25 22:07:18+0000
  0s autopkgtest [22:07:18]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [22:07:18]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.bv9du5u9/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:spades --apt-upgrade unicycler --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=spades/4.0.0+dfsg1-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-2.secgroup --name adt-plucky-amd64-unicycler-20250325-220718-juju-7f2275-prod-proposed-migration-environment-2-1b6c69c4-1e27-4b5f-9bea-f7fbfd517128 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 53s autopkgtest [22:08:11]: testbed dpkg architecture: amd64
 53s autopkgtest [22:08:11]: testbed apt version: 2.9.31ubuntu1
 53s autopkgtest [22:08:11]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 53s autopkgtest [22:08:11]: testbed release detected to be: None
 54s autopkgtest [22:08:12]: updating testbed package index (apt update)
 54s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
 54s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
 54s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 54s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
 54s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [262 kB]
 54s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [28.1 kB]
 54s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [1232 B]
 54s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [10.9 kB]
 54s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [54.2 kB]
 54s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [66.5 kB]
 54s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [616 B]
 54s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [1256 B]
 54s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B]
 54s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [83.0 kB]
 54s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [173 kB]
 54s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [11.0 kB]
 54s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [7232 B]
 54s Get:18 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [3176 B]
 54s Get:19 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [292 B]
 55s Fetched 828 kB in 0s (4842 kB/s)
 56s Reading package lists...
 56s autopkgtest [22:08:14]: upgrading testbed (apt dist-upgrade and autopurge)
 56s Reading package lists...
 57s Building dependency tree...
 57s Reading state information...
 57s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
 57s Starting 2 pkgProblemResolver with broken count: 0
 57s Done
 58s Entering ResolveByKeep
 58s 
 58s Calculating upgrade...
 58s The following packages were automatically installed and are no longer required:
 58s   libnl-genl-3-200 python3.12-gdbm
 58s Use 'sudo apt autoremove' to remove them.
 58s The following NEW packages will be installed:
 58s   linux-headers-6.14.0-11 linux-headers-6.14.0-11-generic
 58s   linux-image-6.14.0-11-generic linux-modules-6.14.0-11-generic
 58s   linux-modules-extra-6.14.0-11-generic pnp.ids
 58s The following packages will be upgraded:
 58s   apparmor apt apt-utils bash binutils binutils-common
 58s   binutils-x86-64-linux-gnu cloud-init cloud-init-base cron cron-daemon-common
 58s   curl dbus dbus-bin dbus-daemon dbus-session-bus-common
 58s   dbus-system-bus-common dbus-user-session dhcpcd-base diffutils dosfstools
 58s   dpkg dpkg-dev dracut-install fwupd gcc-14-base gcc-15-base
 58s   gir1.2-girepository-2.0 gir1.2-glib-2.0 grub-common grub-efi-amd64-bin
 58s   grub-efi-amd64-signed grub-efi-amd64-unsigned grub-pc grub-pc-bin
 58s   grub2-common htop hwdata ibverbs-providers initramfs-tools
 58s   initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0
 58s   libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 libc-bin
 58s   libc-dev-bin libc6 libc6-dev libcap-ng0 libclang-cpp18 libclang1-19
 58s   libctf-nobfd0 libctf0 libcurl3t64-gnutls libcurl4t64 libdbus-1-3
 58s   libdpkg-perl libdw1t64 libelf1t64 libestr0 libfwupd3 libgcc-s1
 58s   libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgnutls30t64
 58s   libgprofng0 libibverbs1 libjemalloc2 libjson-glib-1.0-0
 58s   libjson-glib-1.0-common libldap-common libldap2 libllvm18 libllvm19 liblz4-1
 58s   liblzma5 libmm-glib0 libncurses6 libncursesw6 libnl-3-200 libnl-genl-3-200
 58s   libnl-route-3-200 libnss-systemd libpam-systemd libpci3 libpng16-16t64
 58s   libproc2-0 libpython3-stdlib libpython3.13 libpython3.13-minimal
 58s   libpython3.13-stdlib libselinux1 libsframe1 libsqlite3-0 libssl3t64
 58s   libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 libxmlb2
 58s   linux-firmware linux-generic linux-headers-generic linux-headers-virtual
 58s   linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common
 58s   linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term
 58s   openssl openssl-provider-legacy pci.ids pciutils pinentry-curses procps
 58s   python-apt-common python3 python3-apt python3-cffi-backend python3-dbus
 58s   python3-gdbm python3-gi python3-jaraco.context python3-jinja2
 58s   python3-lazr.uri python3-markupsafe python3-minimal python3-passlib
 58s   python3-systemd python3-urllib3 python3-yaml python3.13 python3.13-gdbm
 58s   python3.13-minimal rsync rsyslog shared-mime-info strace systemd
 58s   systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd
 58s   ubuntu-pro-client ubuntu-pro-client-l10n udev xfsprogs xz-utils
 58s 161 upgraded, 6 newly installed, 0 to remove and 0 not upgraded.
 58s Need to get 922 MB of archives.
 58s After this operation, 300 MB of additional disk space will be used.
 58s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 bash amd64 5.2.37-1.1ubuntu1 [920 kB]
 58s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 diffutils amd64 1:3.10-3 [192 kB]
 58s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-6ubuntu1 [2183 kB]
 58s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-6ubuntu1 [23.4 kB]
 58s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-11.11 [1724 kB]
 58s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250319-1ubuntu1 [10.4 kB]
 58s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250319-1ubuntu1 [53.6 kB]
 58s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250319-1ubuntu1 [77.7 kB]
 58s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250319-1ubuntu1 [804 kB]
 58s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-6ubuntu1 [3329 kB]
 58s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB]
 58s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB]
 58s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 openssl-provider-legacy amd64 3.4.1-1ubuntu2 [39.0 kB]
 58s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libssl3t64 amd64 3.4.1-1ubuntu2 [2334 kB]
 59s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.4-1ubuntu2 [595 kB]
 59s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.4-1ubuntu2 [199 kB]
 59s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.4-1ubuntu2 [11.9 kB]
 59s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.4-1ubuntu2 [345 kB]
 59s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.4-1ubuntu2 [302 kB]
 59s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.4-1ubuntu2 [2371 kB]
 59s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.4-1ubuntu2 [3053 kB]
 59s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.4-1ubuntu2 [42.0 kB]
 59s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.4-1ubuntu2 [124 kB]
 59s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.4-1ubuntu2 [1404 kB]
 59s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.4-1ubuntu2 [216 kB]
 59s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 dbus-session-bus-common all 1.16.2-2ubuntu1 [54.2 kB]
 59s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dbus-user-session amd64 1.16.2-2ubuntu1 [9692 B]
 59s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu11 [55.2 kB]
 59s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B]
 59s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB]
 59s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB]
 59s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB]
 59s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 dbus-system-bus-common all 1.16.2-2ubuntu1 [55.7 kB]
 59s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 dbus-bin amd64 1.16.2-2ubuntu1 [46.5 kB]
 59s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 dbus amd64 1.16.2-2ubuntu1 [24.8 kB]
 59s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 dbus-daemon amd64 1.16.2-2ubuntu1 [123 kB]
 59s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libdbus-1-3 amd64 1.16.2-2ubuntu1 [195 kB]
 59s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.34 [1143 kB]
 59s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 dpkg amd64 1.22.18ubuntu2 [1359 kB]
 59s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB]
 59s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-6ubuntu1 [701 kB]
 59s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB]
 59s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB]
 59s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.34 [1440 kB]
 59s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.34 [222 kB]
 59s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB]
 59s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB]
 59s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB]
 59s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB]
 59s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB]
 59s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB]
 59s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB]
 59s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB]
 59s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB]
 59s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB]
 59s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB]
 59s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB]
 59s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB]
 59s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 cron amd64 3.0pl1-194ubuntu1 [93.9 kB]
 59s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB]
 59s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-base amd64 14.2.0-19ubuntu1 [53.9 kB]
 59s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libproc2-0 amd64 2:4.0.4-7ubuntu1 [62.0 kB]
 59s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 procps amd64 2:4.0.4-7ubuntu1 [718 kB]
 59s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 dhcpcd-base amd64 1:10.1.0-8 [250 kB]
 59s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.84.0-1 [25.3 kB]
 59s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-2 [184 kB]
 59s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-2 [1669 kB]
 59s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.84.0-1 [89.5 kB]
 59s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libdw1t64 amd64 0.192-4ubuntu1 [277 kB]
 59s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libelf1t64 amd64 0.192-4ubuntu1 [58.6 kB]
 59s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B]
 59s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-2 [53.1 kB]
 59s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls30t64 amd64 3.8.9-2ubuntu3 [1093 kB]
 59s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB]
 59s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-6ubuntu1 [4250 kB]
 59s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 openssl amd64 3.4.1-1ubuntu2 [1189 kB]
 59s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB]
 59s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB]
 59s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB]
 59s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB]
 59s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB]
 59s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB]
 59s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB]
 59s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 shared-mime-info amd64 2.4-5build1 [480 kB]
 59s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-pro-client-l10n amd64 35 [19.7 kB]
 59s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-pro-client amd64 35 [257 kB]
 59s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu11 [702 kB]
 59s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 cron-daemon-common all 3.0pl1-194ubuntu1 [14.6 kB]
 59s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB]
 59s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-2 [12.2 kB]
 59s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-2 [192 kB]
 59s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-2 [64.9 kB]
 59s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libibverbs1 amd64 56.0-3ubuntu1 [68.6 kB]
 59s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 ibverbs-providers amd64 56.0-3ubuntu1 [388 kB]
 59s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB]
 59s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB]
 59s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB]
 59s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng16-16t64 amd64 1.6.47-1.1 [217 kB]
 59s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB]
 59s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gdbm amd64 3.13.2-1 [8708 B]
 59s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB]
 59s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB]
 59s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB]
 59s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB]
 59s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB]
 59s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB]
 59s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB]
 59s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB]
 59s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB]
 59s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB]
 59s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB]
 59s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
 59s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB]
 59s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB]
 59s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libldap-common all 2.6.9+dfsg-2ubuntu1 [35.5 kB]
 59s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libldap2 amd64 2.6.9+dfsg-2ubuntu1 [212 kB]
 59s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB]
 59s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB]
 59s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 dpkg-dev all 1.22.18ubuntu2 [1089 kB]
 59s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libdpkg-perl all 1.22.18ubuntu2 [281 kB]
 59s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 dracut-install amd64 106-2ubuntu4 [36.8 kB]
 59s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB]
 59s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libjson-glib-1.0-common all 1.10.6+ds-2 [5698 B]
 59s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libjson-glib-1.0-0 amd64 1.10.6+ds-2 [73.4 kB]
 59s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-7 [5408 kB]
 59s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-7 [137 kB]
 59s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB]
 59s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmlb2 amd64 0.3.22-1 [74.8 kB]
 59s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 grub-pc amd64 2.12-5ubuntu10 [137 kB]
 59s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 grub2-common amd64 2.12-5ubuntu10 [674 kB]
 59s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 grub-pc-bin amd64 2.12-5ubuntu10 [1131 kB]
 59s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 grub-common amd64 2.12-5ubuntu10 [2114 kB]
 59s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 grub-efi-amd64-unsigned amd64 2.12-5ubuntu9 [1393 kB]
 59s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 grub-efi-amd64-signed amd64 1.211+2.12-5ubuntu9 [1395 kB]
 59s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 grub-efi-amd64-bin amd64 2.12-5ubuntu9 [783 kB]
 59s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB]
 59s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B]
 59s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB]
 59s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250317.git1d4c88ee-0ubuntu1 [573 MB]
 65s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu2 [8034 B]
 65s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu2 [52.0 kB]
 65s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu2 [26.3 kB]
 65s Get:143 http://ftpmaster.internal/ubuntu plucky/main amd64 libclang-cpp18 amd64 1:18.1.8-17 [13.4 MB]
 65s Get:144 http://ftpmaster.internal/ubuntu plucky/main amd64 libllvm18 amd64 1:18.1.8-17 [27.4 MB]
 65s Get:145 http://ftpmaster.internal/ubuntu plucky/main amd64 libllvm19 amd64 1:19.1.7-3ubuntu1 [28.6 MB]
 65s Get:146 http://ftpmaster.internal/ubuntu plucky/main amd64 libclang1-19 amd64 1:19.1.7-3ubuntu1 [8246 kB]
 65s Get:147 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB]
 65s Get:148 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-11-generic amd64 6.14.0-11.11 [41.2 MB]
 66s Get:149 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-11-generic amd64 6.14.0-11.11 [15.3 MB]
 66s Get:150 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-11-generic amd64 6.14.0-11.11 [120 MB]
 67s Get:151 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-11.11 [1730 B]
 67s Get:152 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-11.11 [11.2 kB]
 67s Get:153 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-11.11 [1724 B]
 67s Get:154 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-11.11 [11.1 kB]
 67s Get:155 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-11.11 [1646 B]
 67s Get:156 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-11 all 6.14.0-11.11 [14.2 MB]
 67s Get:157 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-11-generic amd64 6.14.0-11.11 [3915 kB]
 67s Get:158 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-11.11 [11.0 kB]
 67s Get:159 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-11.11 [296 kB]
 67s Get:160 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB]
 67s Get:161 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jaraco.context all 6.0.1-1 [8272 B]
 67s Get:162 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB]
 67s Get:163 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB]
 67s Get:164 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-urllib3 all 2.3.0-2 [94.1 kB]
 67s Get:165 http://ftpmaster.internal/ubuntu plucky/main amd64 xfsprogs amd64 6.13.0-2ubuntu1 [1040 kB]
 67s Get:166 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-passlib all 1.7.4-6ubuntu1 [375 kB]
 67s Get:167 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B]
 68s Preconfiguring packages ...
 68s Fetched 922 MB in 9s (104 MB/s)
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 68s Preparing to unpack .../bash_5.2.37-1.1ubuntu1_amd64.deb ...
 68s Unpacking bash (5.2.37-1.1ubuntu1) over (5.2.37-1ubuntu1) ...
 68s Setting up bash (5.2.37-1.1ubuntu1) ...
 68s update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode
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 68s Preparing to unpack .../diffutils_1%3a3.10-3_amd64.deb ...
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 68s Setting up diffutils (1:3.10-3) ...
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 68s Preparing to unpack .../libc6-dev_2.41-6ubuntu1_amd64.deb ...
 68s Unpacking libc6-dev:amd64 (2.41-6ubuntu1) over (2.41-1ubuntu1) ...
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 69s Preparing to unpack .../libatomic1_15-20250319-1ubuntu1_amd64.deb ...
 69s Unpacking libatomic1:amd64 (15-20250319-1ubuntu1) over (15-20250222-0ubuntu1) ...
 69s Preparing to unpack .../gcc-15-base_15-20250319-1ubuntu1_amd64.deb ...
 69s Unpacking gcc-15-base:amd64 (15-20250319-1ubuntu1) over (15-20250222-0ubuntu1) ...
 69s Setting up gcc-15-base:amd64 (15-20250319-1ubuntu1) ...
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 69s Preparing to unpack .../libgcc-s1_15-20250319-1ubuntu1_amd64.deb ...
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 69s Setting up libgcc-s1:amd64 (15-20250319-1ubuntu1) ...
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 69s Preparing to unpack .../libstdc++6_15-20250319-1ubuntu1_amd64.deb ...
 69s Unpacking libstdc++6:amd64 (15-20250319-1ubuntu1) over (15-20250222-0ubuntu1) ...
 69s Setting up libstdc++6:amd64 (15-20250319-1ubuntu1) ...
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 69s Preparing to unpack .../libc6_2.41-6ubuntu1_amd64.deb ...
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 70s Setting up libc6:amd64 (2.41-6ubuntu1) ...
 70s (Reading database ... 
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 70s Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ...
 70s Unpacking liblz4-1:amd64 (1.10.0-4) over (1.10.0-3) ...
 70s Setting up liblz4-1:amd64 (1.10.0-4) ...
 70s (Reading database ... 
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 70s Preparing to unpack .../liblzma5_5.6.4-1_amd64.deb ...
 70s Unpacking liblzma5:amd64 (5.6.4-1) over (5.6.3-1) ...
 70s Setting up liblzma5:amd64 (5.6.4-1) ...
 70s (Reading database ... 
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 70s Preparing to unpack .../openssl-provider-legacy_3.4.1-1ubuntu2_amd64.deb ...
 70s Unpacking openssl-provider-legacy (3.4.1-1ubuntu2) over (3.4.1-1ubuntu1) ...
 70s Setting up openssl-provider-legacy (3.4.1-1ubuntu2) ...
 70s (Reading database ... 
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 70s Preparing to unpack .../libssl3t64_3.4.1-1ubuntu2_amd64.deb ...
 70s Unpacking libssl3t64:amd64 (3.4.1-1ubuntu2) over (3.4.1-1ubuntu1) ...
 70s Setting up libssl3t64:amd64 (3.4.1-1ubuntu2) ...
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 70s Preparing to unpack .../libsystemd0_257.4-1ubuntu2_amd64.deb ...
 70s Unpacking libsystemd0:amd64 (257.4-1ubuntu2) over (257.3-1ubuntu3) ...
 70s Setting up libsystemd0:amd64 (257.4-1ubuntu2) ...
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 70s Preparing to unpack .../libnss-systemd_257.4-1ubuntu2_amd64.deb ...
 70s Unpacking libnss-systemd:amd64 (257.4-1ubuntu2) over (257.3-1ubuntu3) ...
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 71s Unpacking systemd-resolved (257.4-1ubuntu2) over (257.3-1ubuntu3) ...
 71s Preparing to unpack .../libpam-systemd_257.4-1ubuntu2_amd64.deb ...
 71s Unpacking libpam-systemd:amd64 (257.4-1ubuntu2) over (257.3-1ubuntu3) ...
 71s Preparing to unpack .../libsystemd-shared_257.4-1ubuntu2_amd64.deb ...
 71s Unpacking libsystemd-shared:amd64 (257.4-1ubuntu2) over (257.3-1ubuntu3) ...
 71s Setting up libsystemd-shared:amd64 (257.4-1ubuntu2) ...
 71s (Reading database ... 
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 71s Preparing to unpack .../systemd_257.4-1ubuntu2_amd64.deb ...
 71s Unpacking systemd (257.4-1ubuntu2) over (257.3-1ubuntu3) ...
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 71s Unpacking systemd-timesyncd (257.4-1ubuntu2) over (257.3-1ubuntu3) ...
 71s Preparing to unpack .../systemd-cryptsetup_257.4-1ubuntu2_amd64.deb ...
 71s Unpacking systemd-cryptsetup (257.4-1ubuntu2) over (257.3-1ubuntu3) ...
 71s Preparing to unpack .../udev_257.4-1ubuntu2_amd64.deb ...
 71s Unpacking udev (257.4-1ubuntu2) over (257.3-1ubuntu3) ...
 71s Preparing to unpack .../libudev1_257.4-1ubuntu2_amd64.deb ...
 71s Unpacking libudev1:amd64 (257.4-1ubuntu2) over (257.3-1ubuntu3) ...
 71s Setting up libudev1:amd64 (257.4-1ubuntu2) ...
 71s (Reading database ... 
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 71s Preparing to unpack .../dbus-session-bus-common_1.16.2-2ubuntu1_all.deb ...
 71s Unpacking dbus-session-bus-common (1.16.2-2ubuntu1) over (1.16.2-1ubuntu1) ...
 72s Preparing to unpack .../dbus-user-session_1.16.2-2ubuntu1_amd64.deb ...
 72s Unpacking dbus-user-session (1.16.2-2ubuntu1) over (1.16.2-1ubuntu1) ...
 72s Preparing to unpack .../libapparmor1_4.1.0~beta5-0ubuntu11_amd64.deb ...
 72s Unpacking libapparmor1:amd64 (4.1.0~beta5-0ubuntu11) over (4.1.0~beta5-0ubuntu6) ...
 72s Preparing to unpack .../libaudit-common_1%3a4.0.2-2ubuntu2_all.deb ...
 72s Unpacking libaudit-common (1:4.0.2-2ubuntu2) over (1:4.0.2-2ubuntu1) ...
 72s Setting up libaudit-common (1:4.0.2-2ubuntu2) ...
 72s (Reading database ... 
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 72s Preparing to unpack .../libcap-ng0_0.8.5-4build1_amd64.deb ...
 72s Unpacking libcap-ng0:amd64 (0.8.5-4build1) over (0.8.5-4) ...
 72s Setting up libcap-ng0:amd64 (0.8.5-4build1) ...
 72s (Reading database ... 
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 72s Preparing to unpack .../libaudit1_1%3a4.0.2-2ubuntu2_amd64.deb ...
 72s Unpacking libaudit1:amd64 (1:4.0.2-2ubuntu2) over (1:4.0.2-2ubuntu1) ...
 72s Setting up libaudit1:amd64 (1:4.0.2-2ubuntu2) ...
 72s (Reading database ... 
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 72s Preparing to unpack .../libselinux1_3.7-3ubuntu3_amd64.deb ...
 72s Unpacking libselinux1:amd64 (3.7-3ubuntu3) over (3.7-3ubuntu2) ...
 72s Setting up libselinux1:amd64 (3.7-3ubuntu3) ...
 72s (Reading database ... 
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(Reading database ... 109144 files and directories currently installed.)
 72s Preparing to unpack .../0-dbus-system-bus-common_1.16.2-2ubuntu1_all.deb ...
 72s Unpacking dbus-system-bus-common (1.16.2-2ubuntu1) over (1.16.2-1ubuntu1) ...
 72s Preparing to unpack .../1-dbus-bin_1.16.2-2ubuntu1_amd64.deb ...
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 82s Preparing to unpack .../078-grub-pc-bin_2.12-5ubuntu10_amd64.deb ...
 82s Unpacking grub-pc-bin (2.12-5ubuntu10) over (2.12-5ubuntu7) ...
 82s Preparing to unpack .../079-grub-common_2.12-5ubuntu10_amd64.deb ...
 82s Unpacking grub-common (2.12-5ubuntu10) over (2.12-5ubuntu7) ...
 82s Preparing to unpack .../080-grub-efi-amd64-unsigned_2.12-5ubuntu9_amd64.deb ...
 82s Unpacking grub-efi-amd64-unsigned (2.12-5ubuntu9) over (2.12-5ubuntu5.1) ...
 82s Preparing to unpack .../081-grub-efi-amd64-signed_1.211+2.12-5ubuntu9_amd64.deb ...
 82s Unpacking grub-efi-amd64-signed (1.211+2.12-5ubuntu9) over (1.209.1+2.12-5ubuntu5.1) ...
 82s Preparing to unpack .../082-grub-efi-amd64-bin_2.12-5ubuntu9_amd64.deb ...
 82s Unpacking grub-efi-amd64-bin (2.12-5ubuntu9) over (2.12-5ubuntu5.1) ...
 82s Preparing to unpack .../083-htop_3.4.0-2_amd64.deb ...
 82s Unpacking htop (3.4.0-2) over (3.3.0-5) ...
 82s Preparing to unpack .../084-hwdata_0.393-3_all.deb ...
 82s Unpacking hwdata (0.393-3) over (0.393-1) ...
 82s Selecting previously unselected package pnp.ids.
 82s Preparing to unpack .../085-pnp.ids_0.393-3_all.deb ...
 82s Unpacking pnp.ids (0.393-3) ...
 82s Preparing to unpack .../086-linux-firmware_20250317.git1d4c88ee-0ubuntu1_amd64.deb ...
 82s Unpacking linux-firmware (20250317.git1d4c88ee-0ubuntu1) over (20250204.git0fd450ee-0ubuntu1) ...
 85s Preparing to unpack .../087-initramfs-tools_0.146ubuntu2_all.deb ...
 85s Unpacking initramfs-tools (0.146ubuntu2) over (0.146ubuntu1) ...
 85s Preparing to unpack .../088-initramfs-tools-core_0.146ubuntu2_all.deb ...
 85s Unpacking initramfs-tools-core (0.146ubuntu2) over (0.146ubuntu1) ...
 85s Preparing to unpack .../089-initramfs-tools-bin_0.146ubuntu2_amd64.deb ...
 85s Unpacking initramfs-tools-bin (0.146ubuntu2) over (0.146ubuntu1) ...
 85s Preparing to unpack .../090-libclang-cpp18_1%3a18.1.8-17_amd64.deb ...
 85s Unpacking libclang-cpp18 (1:18.1.8-17) over (1:18.1.8-16build1) ...
 86s Preparing to unpack .../091-libllvm18_1%3a18.1.8-17_amd64.deb ...
 86s Unpacking libllvm18:amd64 (1:18.1.8-17) over (1:18.1.8-16build1) ...
 86s Preparing to unpack .../092-libllvm19_1%3a19.1.7-3ubuntu1_amd64.deb ...
 86s Unpacking libllvm19:amd64 (1:19.1.7-3ubuntu1) over (1:19.1.7-1ubuntu2) ...
 87s Preparing to unpack .../093-libclang1-19_1%3a19.1.7-3ubuntu1_amd64.deb ...
 87s Unpacking libclang1-19 (1:19.1.7-3ubuntu1) over (1:19.1.7-1ubuntu2) ...
 87s Preparing to unpack .../094-libjemalloc2_5.3.0-3_amd64.deb ...
 87s Unpacking libjemalloc2:amd64 (5.3.0-3) over (5.3.0-2build1) ...
 87s Selecting previously unselected package linux-modules-6.14.0-11-generic.
 87s Preparing to unpack .../095-linux-modules-6.14.0-11-generic_6.14.0-11.11_amd64.deb ...
 87s Unpacking linux-modules-6.14.0-11-generic (6.14.0-11.11) ...
 87s Selecting previously unselected package linux-image-6.14.0-11-generic.
 87s Preparing to unpack .../096-linux-image-6.14.0-11-generic_6.14.0-11.11_amd64.deb ...
 87s Unpacking linux-image-6.14.0-11-generic (6.14.0-11.11) ...
 87s Selecting previously unselected package linux-modules-extra-6.14.0-11-generic.
 87s Preparing to unpack .../097-linux-modules-extra-6.14.0-11-generic_6.14.0-11.11_amd64.deb ...
 87s Unpacking linux-modules-extra-6.14.0-11-generic (6.14.0-11.11) ...
 89s Preparing to unpack .../098-linux-generic_6.14.0-11.11_amd64.deb ...
 89s Unpacking linux-generic (6.14.0-11.11) over (6.12.0-16.16+2) ...
 89s Preparing to unpack .../099-linux-image-generic_6.14.0-11.11_amd64.deb ...
 89s Unpacking linux-image-generic (6.14.0-11.11) over (6.12.0-16.16+2) ...
 89s Preparing to unpack .../100-linux-virtual_6.14.0-11.11_amd64.deb ...
 89s Unpacking linux-virtual (6.14.0-11.11) over (6.12.0-16.16+2) ...
 89s Preparing to unpack .../101-linux-image-virtual_6.14.0-11.11_amd64.deb ...
 89s Unpacking linux-image-virtual (6.14.0-11.11) over (6.12.0-16.16+2) ...
 89s Preparing to unpack .../102-linux-headers-virtual_6.14.0-11.11_amd64.deb ...
 89s Unpacking linux-headers-virtual (6.14.0-11.11) over (6.12.0-16.16+2) ...
 89s Selecting previously unselected package linux-headers-6.14.0-11.
 89s Preparing to unpack .../103-linux-headers-6.14.0-11_6.14.0-11.11_all.deb ...
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 92s Preparing to unpack .../105-linux-headers-generic_6.14.0-11.11_amd64.deb ...
 92s Unpacking linux-headers-generic (6.14.0-11.11) over (6.12.0-16.16+2) ...
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 92s Unpacking linux-tools-common (6.14.0-11.11) over (6.12.0-16.16) ...
 92s Preparing to unpack .../107-pinentry-curses_1.3.1-2ubuntu3_amd64.deb ...
 92s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ...
 92s Preparing to unpack .../108-python3-jaraco.context_6.0.1-1_all.deb ...
 92s Unpacking python3-jaraco.context (6.0.1-1) over (6.0.0-1) ...
 92s Preparing to unpack .../109-python3-lazr.uri_1.0.6-6_all.deb ...
 92s Unpacking python3-lazr.uri (1.0.6-6) over (1.0.6-5) ...
 92s Preparing to unpack .../110-python3-systemd_235-1build6_amd64.deb ...
 92s Unpacking python3-systemd (235-1build6) over (235-1build5) ...
 92s Preparing to unpack .../111-python3-urllib3_2.3.0-2_all.deb ...
 92s Unpacking python3-urllib3 (2.3.0-2) over (2.3.0-1) ...
 92s Preparing to unpack .../112-xfsprogs_6.13.0-2ubuntu1_amd64.deb ...
 92s Unpacking xfsprogs (6.13.0-2ubuntu1) over (6.12.0-1ubuntu1) ...
 93s Preparing to unpack .../113-python3-passlib_1.7.4-6ubuntu1_all.deb ...
 93s Unpacking python3-passlib (1.7.4-6ubuntu1) over (1.7.4-4) ...
 93s Preparing to unpack .../114-cloud-init_25.1-0ubuntu3_all.deb ...
 93s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ...
 93s Setting up libgnutls30t64:amd64 (3.8.9-2ubuntu3) ...
 93s Setting up media-types (13.0.0) ...
 93s Installing new version of config file /etc/mime.types ...
 93s Setting up linux-headers-6.14.0-11 (6.14.0-11.11) ...
 93s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu11) ...
 93s Setting up pci.ids (0.0~2025.03.09-1) ...
 93s Setting up apt-utils (2.9.34) ...
 93s Setting up gcc-14-base:amd64 (14.2.0-19ubuntu1) ...
 93s Setting up linux-firmware (20250317.git1d4c88ee-0ubuntu1) ...
 93s Setting up libestr0:amd64 (0.1.11-2) ...
 93s Setting up libbrotli1:amd64 (1.1.0-2build4) ...
 93s Setting up libsqlite3-0:amd64 (3.46.1-2) ...
 93s Setting up dosfstools (4.2-1.2) ...
 93s Setting up rsyslog (8.2412.0-2ubuntu2) ...
 93s info: The user `syslog' is already a member of `adm'.
 94s Setting up binutils-common:amd64 (2.44-3ubuntu1) ...
 94s Setting up linux-libc-dev:amd64 (6.14.0-11.11) ...
 94s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ...
 94s Setting up systemd (257.4-1ubuntu2) ...
 94s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring.

 94s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'.

 94s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring.

 95s Setting up libjemalloc2:amd64 (5.3.0-3) ...
 95s Setting up locales (2.41-6ubuntu1) ...
 96s Generating locales (this might take a while)...
 97s   en_US.UTF-8... done
 97s Generation complete.
 97s Setting up libldap-common (2.6.9+dfsg-2ubuntu1) ...
 97s Setting up libsframe1:amd64 (2.44-3ubuntu1) ...
 97s Setting up libelf1t64:amd64 (0.192-4ubuntu1) ...
 97s Setting up libdw1t64:amd64 (0.192-4ubuntu1) ...
 97s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ...
 97s Setting up apparmor (4.1.0~beta5-0ubuntu11) ...
 97s Installing new version of config file /etc/apparmor.d/openvpn ...
 98s Removing obsolete conffile /etc/apparmor.d/unshare-userns-restrict ...
 98s Reloading AppArmor profiles 
 99s Setting up libglib2.0-data (2.84.0-2) ...
 99s Setting up systemd-cryptsetup (257.4-1ubuntu2) ...
 99s Setting up libncurses6:amd64 (6.5+20250216-2) ...
 99s Setting up strace (6.13+ds-1ubuntu1) ...
 99s Setting up libdbus-1-3:amd64 (1.16.2-2ubuntu1) ...
 99s Setting up xz-utils (5.6.4-1) ...
 99s Setting up libproc2-0:amd64 (2:4.0.4-7ubuntu1) ...
 99s Setting up libpng16-16t64:amd64 (1.6.47-1.1) ...
 99s Setting up systemd-timesyncd (257.4-1ubuntu2) ...
100s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it.
100s Setting up libatomic1:amd64 (15-20250319-1ubuntu1) ...
100s Setting up udev (257.4-1ubuntu2) ...
101s Setting up dhcpcd-base (1:10.1.0-8) ...
101s Setting up libncursesw6:amd64 (6.5+20250216-2) ...
101s Setting up libdpkg-perl (1.22.18ubuntu2) ...
101s Setting up linux-headers-6.14.0-11-generic (6.14.0-11.11) ...
101s Setting up libpci3:amd64 (1:3.13.0-2) ...
101s Setting up python-apt-common (2.9.9build1) ...
101s Setting up dracut-install (106-2ubuntu4) ...
101s Setting up pnp.ids (0.393-3) ...
101s Setting up dbus-session-bus-common (1.16.2-2ubuntu1) ...
101s Setting up procps (2:4.0.4-7ubuntu1) ...
101s Installing new version of config file /etc/sysctl.d/README.sysctl ...
101s Removing obsolete conffile /etc/sysctl.conf ...
101s Setting up libnl-3-200:amd64 (3.7.0-2) ...
101s Setting up python3.13-minimal (3.13.2-2) ...
102s Setting up libjson-glib-1.0-common (1.10.6+ds-2) ...
102s Setting up libbinutils:amd64 (2.44-3ubuntu1) ...
102s Setting up dbus-system-bus-common (1.16.2-2ubuntu1) ...
102s Setting up libc-dev-bin (2.41-6ubuntu1) ...
102s Setting up openssl (3.4.1-1ubuntu2) ...
102s Installing new version of config file /etc/ssl/openssl.cnf ...
102s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ...
102s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ...
102s Setting up libldap2:amd64 (2.6.9+dfsg-2ubuntu1) ...
102s Setting up dbus-bin (1.16.2-2ubuntu1) ...
102s Setting up linux-modules-6.14.0-11-generic (6.14.0-11.11) ...
104s Setting up rsync (3.4.1+ds1-3) ...
104s rsync.service is a disabled or a static unit not running, not starting it.
104s Setting up python3.13-gdbm (3.13.2-2) ...
104s Setting up libpython3-stdlib:amd64 (3.13.2-2) ...
104s Setting up libllvm18:amd64 (1:18.1.8-17) ...
104s Setting up initramfs-tools-bin (0.146ubuntu2) ...
104s Setting up ncurses-term (6.5+20250216-2) ...
104s Setting up cron-daemon-common (3.0pl1-194ubuntu1) ...
104s Setting up libctf0:amd64 (2.44-3ubuntu1) ...
104s Setting up libpython3.13:amd64 (3.13.2-2) ...
104s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
105s Setting up libllvm19:amd64 (1:19.1.7-3ubuntu1) ...
105s Setting up systemd-sysv (257.4-1ubuntu2) ...
105s Setting up linux-modules-extra-6.14.0-11-generic (6.14.0-11.11) ...
107s Setting up linux-image-6.14.0-11-generic (6.14.0-11.11) ...
109s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic
109s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic
109s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-11-generic
109s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-11-generic
109s Setting up libclang1-19 (1:19.1.7-3ubuntu1) ...
109s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ...
109s Setting up python3.13 (3.13.2-2) ...
109s Setting up htop (3.4.0-2) ...
109s Setting up cron (3.0pl1-194ubuntu1) ...
110s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ...
110s Setting up libnss-systemd:amd64 (257.4-1ubuntu2) ...
110s Setting up python3 (3.13.2-2) ...
110s Setting up linux-headers-generic (6.14.0-11.11) ...
110s Setting up dbus-daemon (1.16.2-2ubuntu1) ...
110s Setting up python3-markupsafe (2.1.5-1build4) ...
110s Setting up libnl-route-3-200:amd64 (3.7.0-2) ...
110s Setting up hwdata (0.393-3) ...
110s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
111s Setting up libglib2.0-0t64:amd64 (2.84.0-2) ...
111s No schema files found: doing nothing.
111s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ...
111s Setting up dbus (1.16.2-2ubuntu1) ...
111s A reboot is required to replace the running dbus-daemon.
111s Please reboot the system when convenient.
111s Setting up shared-mime-info (2.4-5build1) ...
111s Setting up gir1.2-glib-2.0:amd64 (2.84.0-2) ...
111s Setting up pciutils (1:3.13.0-2) ...
111s Setting up python3-urllib3 (2.3.0-2) ...
112s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ...
112s Setting up libnl-genl-3-200:amd64 (3.7.0-2) ...
112s Setting up libpam-systemd:amd64 (257.4-1ubuntu2) ...
112s Setting up libc6-dev:amd64 (2.41-6ubuntu1) ...
112s Setting up libgirepository-1.0-1:amd64 (1.84.0-1) ...
112s Setting up curl (8.12.1-3ubuntu1) ...
112s Setting up linux-image-virtual (6.14.0-11.11) ...
112s Setting up initramfs-tools-core (0.146ubuntu2) ...
112s Setting up libclang-cpp18 (1:18.1.8-17) ...
112s Setting up linux-tools-common (6.14.0-11.11) ...
112s Setting up python3-systemd (235-1build6) ...
112s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ...
112s Setting up systemd-resolved (257.4-1ubuntu2) ...
112s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ...
112s Setting up linux-image-generic (6.14.0-11.11) ...
112s Setting up libibverbs1:amd64 (56.0-3ubuntu1) ...
112s Setting up python3-dbus (1.3.2-5build5) ...
112s Setting up initramfs-tools (0.146ubuntu2) ...
112s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ...
112s update-initramfs: deferring update (trigger activated)
112s Setting up linux-headers-virtual (6.14.0-11.11) ...
112s Setting up linux-generic (6.14.0-11.11) ...
112s Setting up python3-jaraco.context (6.0.1-1) ...
113s Setting up python3-passlib (1.7.4-6ubuntu1) ...
113s Setting up ibverbs-providers:amd64 (56.0-3ubuntu1) ...
113s Setting up python3-gdbm:amd64 (3.13.2-1) ...
113s Setting up python3-apt (2.9.9build1) ...
113s Setting up libxmlb2:amd64 (0.3.22-1) ...
113s Setting up python3-yaml (6.0.2-1build2) ...
113s Setting up python3-lazr.uri (1.0.6-6) ...
113s Setting up binutils (2.44-3ubuntu1) ...
113s Setting up cloud-init-base (25.1-0ubuntu3) ...
115s Setting up dpkg-dev (1.22.18ubuntu2) ...
115s Setting up libjson-glib-1.0-0:amd64 (1.10.6+ds-2) ...
115s Setting up linux-virtual (6.14.0-11.11) ...
115s Setting up grub-common (2.12-5ubuntu10) ...
115s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
116s Setting up dbus-user-session (1.16.2-2ubuntu1) ...
116s Setting up gir1.2-girepository-2.0:amd64 (1.84.0-1) ...
116s Setting up python3-gi (3.50.0-4build1) ...
116s Setting up xfsprogs (6.13.0-2ubuntu1) ...
116s update-initramfs: deferring update (trigger activated)
116s Setting up ubuntu-pro-client (35) ...
116s Installing new version of config file /etc/apparmor.d/ubuntu_pro_apt_news ...
116s Installing new version of config file /etc/apt/apt.conf.d/20apt-esm-hook.conf ...
118s Setting up ubuntu-pro-client-l10n (35) ...
118s Setting up cloud-init (25.1-0ubuntu3) ...
118s Setting up grub-efi-amd64-unsigned (2.12-5ubuntu9) ...
118s Setting up grub2-common (2.12-5ubuntu10) ...
118s Setting up libfwupd3:amd64 (2.0.6-7) ...
118s Setting up grub-pc-bin (2.12-5ubuntu10) ...
118s Setting up grub-pc (2.12-5ubuntu10) ...
118s Installing for i386-pc platform.
119s Installation finished. No error reported.
119s Sourcing file `/etc/default/grub'
119s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
119s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
119s Generating grub configuration file ...
119s Found linux image: /boot/vmlinuz-6.14.0-11-generic
119s Found linux image: /boot/vmlinuz-6.12.0-16-generic
119s Found initrd image: /boot/initrd.img-6.12.0-16-generic
119s Found linux image: /boot/vmlinuz-6.11.0-8-generic
119s Found initrd image: /boot/initrd.img-6.11.0-8-generic
119s Warning: os-prober will not be executed to detect other bootable partitions.
119s Systems on them will not be added to the GRUB boot configuration.
119s Check GRUB_DISABLE_OS_PROBER documentation entry.
119s Adding boot menu entry for UEFI Firmware Settings ...
119s done
119s Setting up grub-efi-amd64-bin (2.12-5ubuntu9) ...
119s Setting up fwupd (2.0.6-7) ...
120s fwupd-refresh.service is a disabled or a static unit not running, not starting it.
120s fwupd.service is a disabled or a static unit not running, not starting it.
120s Setting up grub-efi-amd64-signed (1.211+2.12-5ubuntu9) ...
120s Installing for x86_64-efi platform.
120s grub-install: warning: EFI variables cannot be set on this system.
120s grub-install: warning: You will have to complete the GRUB setup manually.
120s Installation finished. No error reported.
120s Processing triggers for man-db (2.13.0-1) ...
122s Processing triggers for debianutils (5.21) ...
122s Processing triggers for install-info (7.1.1-1) ...
122s Processing triggers for libc-bin (2.41-6ubuntu1) ...
122s Processing triggers for linux-image-6.14.0-11-generic (6.14.0-11.11) ...
122s /etc/kernel/postinst.d/initramfs-tools:
122s update-initramfs: Generating /boot/initrd.img-6.14.0-11-generic
122s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
132s /etc/kernel/postinst.d/zz-update-grub:
132s Sourcing file `/etc/default/grub'
132s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
132s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
132s Generating grub configuration file ...
133s Found linux image: /boot/vmlinuz-6.14.0-11-generic
133s Found initrd image: /boot/initrd.img-6.14.0-11-generic
133s Found linux image: /boot/vmlinuz-6.12.0-16-generic
133s Found initrd image: /boot/initrd.img-6.12.0-16-generic
133s Found linux image: /boot/vmlinuz-6.11.0-8-generic
133s Found initrd image: /boot/initrd.img-6.11.0-8-generic
133s Warning: os-prober will not be executed to detect other bootable partitions.
133s Systems on them will not be added to the GRUB boot configuration.
133s Check GRUB_DISABLE_OS_PROBER documentation entry.
133s Adding boot menu entry for UEFI Firmware Settings ...
133s done
133s Processing triggers for initramfs-tools (0.146ubuntu2) ...
133s update-initramfs: Generating /boot/initrd.img-6.14.0-11-generic
133s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
145s Reading package lists...
145s Building dependency tree...
145s Reading state information...
145s Starting pkgProblemResolver with broken count: 0
145s Starting 2 pkgProblemResolver with broken count: 0
145s Done
145s Solving dependencies...
146s The following packages will be REMOVED:
146s   libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib*
146s   libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
146s   linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic*
146s   linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* python3.12-gdbm*
146s 0 upgraded, 0 newly installed, 12 to remove and 0 not upgraded.
146s After this operation, 225 MB disk space will be freed.
146s (Reading database ... 
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(Reading database ... 148584 files and directories currently installed.)
146s Removing libnl-genl-3-200:amd64 (3.7.0-2) ...
146s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
146s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
146s Removing libpython3.12t64:amd64 (3.12.9-1) ...
146s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ...
146s Removing libnsl2:amd64 (1.3.0-3build3) ...
146s Removing libpython3.12-minimal:amd64 (3.12.9-1) ...
146s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
147s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
149s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ...
149s /etc/kernel/postrm.d/initramfs-tools:
149s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic
149s /etc/kernel/postrm.d/zz-update-grub:
149s Sourcing file `/etc/default/grub'
149s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
149s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
149s Generating grub configuration file ...
149s Found linux image: /boot/vmlinuz-6.14.0-11-generic
149s Found initrd image: /boot/initrd.img-6.14.0-11-generic
149s Found linux image: /boot/vmlinuz-6.12.0-16-generic
149s Found initrd image: /boot/initrd.img-6.12.0-16-generic
150s Warning: os-prober will not be executed to detect other bootable partitions.
150s Systems on them will not be added to the GRUB boot configuration.
150s Check GRUB_DISABLE_OS_PROBER documentation entry.
150s Adding boot menu entry for UEFI Firmware Settings ...
150s done
150s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
150s Removing python3.12-gdbm (3.12.9-1) ...
150s Processing triggers for libc-bin (2.41-6ubuntu1) ...
150s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
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(Reading database ... 30%
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(Reading database ... 50%
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(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 115746 files and directories currently installed.)
150s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ...
150s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ...
150s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
150s autopkgtest [22:09:48]: rebooting testbed after setup commands that affected boot
154s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
165s autopkgtest [22:10:03]: testbed running kernel: Linux 6.14.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Mon Mar 17 12:39:41 UTC 2025
166s autopkgtest [22:10:04]: @@@@@@@@@@@@@@@@@@@@ apt-source unicycler
168s Get:1 http://ftpmaster.internal/ubuntu plucky/universe unicycler 0.5.1+dfsg-3 (dsc) [2389 B]
168s Get:2 http://ftpmaster.internal/ubuntu plucky/universe unicycler 0.5.1+dfsg-3 (tar) [14.8 MB]
168s Get:3 http://ftpmaster.internal/ubuntu plucky/universe unicycler 0.5.1+dfsg-3 (diff) [12.9 kB]
168s gpgv: Signature made Wed Feb  5 20:29:48 2025 UTC
168s gpgv:                using RSA key 8F6DE104377F3B11E741748731F3144544A1741A
168s gpgv:                issuer "tchet@debian.org"
168s gpgv: Can't check signature: No public key
168s dpkg-source: warning: cannot verify inline signature for ./unicycler_0.5.1+dfsg-3.dsc: no acceptable signature found
168s autopkgtest [22:10:06]: testing package unicycler version 0.5.1+dfsg-3
168s autopkgtest [22:10:06]: build not needed
169s autopkgtest [22:10:07]: test run-unit-test: preparing testbed
169s Reading package lists...
169s Building dependency tree...
169s Reading state information...
169s Starting pkgProblemResolver with broken count: 0
169s Starting 2 pkgProblemResolver with broken count: 0
169s Done
170s The following NEW packages will be installed:
170s   adwaita-icon-theme at-spi2-common autoconf automake autopoint autotools-dev
170s   bamtools bcftools bowtie2 build-essential bwa ca-certificates-java cpp
170s   cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu dconf-gsettings-backend
170s   dconf-service debhelper debugedit default-jdk default-jdk-headless
170s   default-jre default-jre-headless dh-autoreconf dh-python
170s   dh-strip-nondeterminism dwz fontconfig fontconfig-config fonts-dejavu-core
170s   fonts-dejavu-mono g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu
170s   gcc gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext
170s   gtk-update-icon-cache hicolor-icon-theme intltool-debian java-common
170s   java-wrappers junit4 libapache-pom-java libarchive-zip-perl libasan8
170s   libasound2-data libasound2t64 libatk-bridge2.0-0t64 libatk1.0-0t64
170s   libatspi2.0-0t64 libavahi-client3 libavahi-common-data libavahi-common3
170s   libbamtools2.5.2 libcairo-gobject2 libcairo2 libcc1-0 libcolord2
170s   libcommons-beanutils-java libcommons-codec-java libcommons-collections3-java
170s   libcommons-collections4-java libcommons-compress-java libcommons-io-java
170s   libcommons-jexl2-java libcommons-lang-java libcommons-lang3-java
170s   libcommons-logging-java libcommons-parent-java libcups2t64 libdatrie1
170s   libdconf1 libdebhelper-perl libdeflate0 libdrm-intel1 libedlib1 libepoxy0
170s   libezmorph-java libfile-stripnondeterminism-perl libfontconfig1 libgbm1
170s   libgcc-14-dev libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1
170s   libgl1-mesa-dri libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3
170s   libgtk-3-0t64 libgtk-3-common libhamcrest-java libharfbuzz0b libhts3t64
170s   libhtscodecs2 libhtsjdk-java libhwasan0 libisl23 libitm1 libjaxen-java
170s   libjbig0 libjpeg-turbo8 libjpeg8 libjson-java libjsoncpp26 liblcms2-2
170s   liblerc4 liblsan0 libmbedcrypto16 libmbedtls21 libmbedx509-7 libmpc3
170s   libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni libnlopt0 libpango-1.0-0
170s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcsclite1
170s   libpixman-1-0 libquadmath0 librhino-java libseqan2-dev libsharpyuv0
170s   libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 libspoa7.0.0 libssw0
170s   libstdc++-14-dev libthai-data libthai0 libtiff6 libtool libtsan2 libubsan1
170s   libvulkan1 libwayland-client0 libwayland-cursor0 libwayland-egl1
170s   libwayland-server0 libwebp7 libx11-xcb1 libxcb-dri3-0 libxcb-glx0
170s   libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1
170s   libxcb-xfixes0 libxcomposite1 libxcursor1 libxdamage1 libxerces2-java
170s   libxfixes3 libxi6 libxinerama1 libxml-commons-external-java
170s   libxml-commons-resolver1.1-java libxom-java libxrandr2 libxrender1
170s   libxshmfence1 libxtst6 libxxf86vm1 m4 mesa-libgallium miniasm ncbi-blast+
170s   ncbi-data ncbi-vdb-data openjdk-21-jdk openjdk-21-jdk-headless
170s   openjdk-21-jre openjdk-21-jre-headless pilon po-debconf python3-all
170s   python3-joblib python3-packaging racon samtools scala-library spades
170s   unicycler unicycler-data unzip x11-common zlib1g-dev
170s 0 upgraded, 202 newly installed, 0 to remove and 0 not upgraded.
170s Need to get 302 MB of archives.
170s After this operation, 859 MB of additional disk space will be used.
170s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libgdk-pixbuf2.0-common all 2.42.12+dfsg-2 [8004 B]
170s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB]
170s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
170s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB]
170s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB]
170s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB]
170s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB]
170s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB]
170s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB]
170s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.12+dfsg-2 [161 kB]
170s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 gtk-update-icon-cache amd64 4.18.2+ds-1 [53.9 kB]
170s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 hicolor-icon-theme all 0.18-2 [13.3 kB]
170s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 adwaita-icon-theme all 48.0-1 [578 kB]
170s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 at-spi2-common all 2.56.0-3 [9140 B]
170s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 m4 amd64 1.4.19-7 [263 kB]
170s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 autoconf all 2.72-3ubuntu1 [383 kB]
170s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 autotools-dev all 20220109.1 [44.9 kB]
170s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 automake all 1:1.17-3ubuntu1 [572 kB]
170s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 autopoint all 0.23.1-1 [619 kB]
170s Get:20 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbamtools2.5.2 amd64 2.5.2+dfsg-6build1 [144 kB]
170s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libjsoncpp26 amd64 1.9.6-3 [90.0 kB]
170s Get:22 http://ftpmaster.internal/ubuntu plucky/universe amd64 bamtools amd64 2.5.2+dfsg-6build1 [178 kB]
170s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhtscodecs2 amd64 1.6.1-2 [132 kB]
170s Get:24 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhts3t64 amd64 1.21+ds-1 [514 kB]
170s Get:25 http://ftpmaster.internal/ubuntu plucky/universe amd64 bcftools amd64 1.21-1 [962 kB]
170s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB]
170s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB]
170s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu1 [11.9 MB]
170s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-19ubuntu1 [1032 B]
170s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B]
170s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB]
170s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250319-1ubuntu1 [46.9 kB]
170s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250319-1ubuntu1 [150 kB]
170s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250319-1ubuntu1 [29.4 kB]
170s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250319-1ubuntu1 [3076 kB]
170s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250319-1ubuntu1 [1362 kB]
170s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250319-1ubuntu1 [2760 kB]
170s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250319-1ubuntu1 [1211 kB]
170s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250319-1ubuntu1 [1686 kB]
170s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250319-1ubuntu1 [153 kB]
170s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-19ubuntu1 [2815 kB]
170s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu1 [23.3 MB]
170s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-19ubuntu1 [539 kB]
170s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B]
170s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B]
170s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-19ubuntu1 [2488 kB]
171s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu1 [13.3 MB]
171s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-19ubuntu1 [22.2 kB]
171s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B]
171s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B]
171s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
171s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 bwa amd64 0.7.18-1 [204 kB]
171s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 ca-certificates-java all 20240118 [11.6 kB]
171s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libdconf1 amd64 0.40.0-5 [39.8 kB]
171s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 dconf-service amd64 0.40.0-5 [28.4 kB]
171s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 dconf-gsettings-backend amd64 0.40.0-5 [22.7 kB]
171s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebhelper-perl all 13.24.1ubuntu2 [95.4 kB]
171s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libtool all 2.5.4-4 [168 kB]
171s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-autoreconf all 20 [16.1 kB]
171s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB]
171s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [20.3 kB]
171s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-strip-nondeterminism all 1.14.1-2 [5064 B]
171s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 debugedit amd64 1:5.1-2 [47.0 kB]
171s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 dwz amd64 0.15-1build6 [115 kB]
171s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 gettext amd64 0.23.1-1 [1086 kB]
171s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB]
171s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 po-debconf all 1.0.21+nmu1 [233 kB]
171s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 debhelper all 13.24.1ubuntu2 [895 kB]
171s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 java-common all 0.76 [6852 B]
171s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB]
171s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcsclite1 amd64 2.3.1-1 [26.6 kB]
171s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 openjdk-21-jre-headless amd64 21.0.7~7ea-1 [46.4 MB]
171s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 default-jre-headless amd64 2:1.21-76 [3178 B]
171s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libatk1.0-0t64 amd64 2.56.0-3 [55.4 kB]
171s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB]
171s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libatspi2.0-0t64 amd64 2.56.0-3 [91.2 kB]
171s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libatk-bridge2.0-0t64 amd64 2.56.0-3 [69.0 kB]
171s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
171s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
171s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2.2ubuntu1 [37.8 kB]
171s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2.2ubuntu1 [164 kB]
171s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB]
171s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB]
171s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B]
171s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB]
171s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.4-1 [662 kB]
171s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo-gobject2 amd64 1.18.4-1 [127 kB]
171s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libcolord2 amd64 1.4.7-3 [155 kB]
171s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-common-data amd64 0.8-16ubuntu2 [31.0 kB]
171s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-common3 amd64 0.8-16ubuntu2 [23.6 kB]
171s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-client3 amd64 0.8-16ubuntu2 [27.5 kB]
171s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libcups2t64 amd64 2.4.11-0ubuntu2 [292 kB]
171s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libepoxy0 amd64 1.5.10-2 [218 kB]
171s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB]
171s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB]
171s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2.2ubuntu1 [180 kB]
171s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB]
171s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB]
171s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB]
171s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.3-1 [256 kB]
171s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.3-1 [52.9 kB]
171s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.3-1 [29.1 kB]
171s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-client0 amd64 1.23.1-3 [29.7 kB]
171s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-cursor0 amd64 1.23.1-3 [10.9 kB]
171s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-egl1 amd64 1.23.1-3 [6168 B]
171s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcomposite1 amd64 1:0.4.6-1 [6642 B]
171s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libxfixes3 amd64 1:6.0.0-2build1 [10.8 kB]
171s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcursor1 amd64 1:1.2.3-1 [23.1 kB]
171s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libxdamage1 amd64 1:1.1.6-1build1 [6150 B]
171s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libxinerama1 amd64 2:1.1.4-3build1 [6396 B]
171s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrandr2 amd64 2:1.5.4-1 [19.6 kB]
171s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libgtk-3-common all 3.24.49-2ubuntu1 [1424 kB]
171s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libgtk-3-0t64 amd64 3.24.49-2ubuntu1 [3172 kB]
171s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB]
171s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [7944 B]
171s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [7508 B]
171s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-glx0 amd64 1.17.0-2 [24.8 kB]
171s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-present0 amd64 1.17.0-2 [6064 B]
171s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [10.2 kB]
171s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B]
171s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB]
171s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-intel1 amd64 2.4.123-1 [68.8 kB]
171s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-randr0 amd64 1.17.0-2 [17.9 kB]
171s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-sync1 amd64 1.17.0-2 [9312 B]
171s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libxshmfence1 amd64 1.3-1build5 [4764 B]
171s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 mesa-libgallium amd64 25.0.1-2ubuntu2 [12.1 MB]
171s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-server0 amd64 1.23.1-3 [37.2 kB]
171s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 libgbm1 amd64 25.0.1-2ubuntu2 [33.3 kB]
171s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 libvulkan1 amd64 1.4.304.0-1 [147 kB]
171s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1-mesa-dri amd64 25.0.1-2ubuntu2 [35.7 kB]
171s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx-mesa0 amd64 25.0.1-2ubuntu2 [146 kB]
171s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB]
171s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB]
171s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 libasound2-data all 1.2.13-1build1 [21.1 kB]
171s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 libasound2t64 amd64 1.2.13-1build1 [437 kB]
171s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 libgif7 amd64 5.2.2-1ubuntu2 [36.0 kB]
171s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
171s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 libxtst6 amd64 2:1.2.5-1 [13.0 kB]
171s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 openjdk-21-jre amd64 21.0.7~7ea-1 [220 kB]
171s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 default-jre amd64 2:1.21-76 [918 B]
171s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 openjdk-21-jdk-headless amd64 21.0.7~7ea-1 [82.8 MB]
172s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 default-jdk-headless amd64 2:1.21-76 [966 B]
172s Get:143 http://ftpmaster.internal/ubuntu plucky/main amd64 openjdk-21-jdk amd64 21.0.7~7ea-1 [3532 kB]
172s Get:144 http://ftpmaster.internal/ubuntu plucky/main amd64 default-jdk amd64 2:1.21-76 [922 B]
172s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 dh-python all 6.20250308 [118 kB]
172s Get:146 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB]
172s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 java-wrappers all 0.5 [9042 B]
172s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhamcrest-java all 2.2-2 [117 kB]
172s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 junit4 all 4.13.2-5 [348 kB]
172s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 libapache-pom-java all 33-2 [5874 B]
172s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-collections3-java all 3.2.2-3 [526 kB]
172s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-parent-java all 56-1 [10.7 kB]
172s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB]
172s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-beanutils-java all 1.9.4-2 [228 kB]
172s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-codec-java all 1.17.1-1 [302 kB]
172s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-collections4-java all 4.4-2 [670 kB]
172s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-io-java all 2.18.0-1 [477 kB]
172s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-compress-java all 1.27.1-2 [610 kB]
172s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-jexl2-java all 2.1.1-6 [250 kB]
172s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-lang-java all 2.6-10 [270 kB]
172s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-lang3-java all 3.17.0-1 [603 kB]
172s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 libedlib1 amd64 1.2.7-6build2 [18.7 kB]
172s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 libezmorph-java all 1.0.6-4 [76.0 kB]
172s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 libslf4j-java all 1.7.32-1 [141 kB]
172s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjaxen-java all 1.1.6-5 [213 kB]
172s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 libxml-commons-external-java all 1.4.01-6 [240 kB]
172s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 libxml-commons-resolver1.1-java all 1.2-11 [97.6 kB]
172s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 libxerces2-java all 2.12.2-1 [1430 kB]
172s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 libxom-java all 1.3.9-1 [174 kB]
172s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjson-java all 3.1.0+dfsg-2 [141 kB]
172s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmbedcrypto16 amd64 3.6.2-3ubuntu1 [276 kB]
172s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmbedx509-7 amd64 3.6.2-3ubuntu1 [37.1 kB]
172s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmbedtls21 amd64 3.6.2-3ubuntu1 [126 kB]
172s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 ncbi-vdb-data all 3.0.9+dfsg-2 [67.7 kB]
172s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 libncbi-vdb3 amd64 3.0.9+dfsg-2 [1409 kB]
172s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 libncbi-ngs3 amd64 3.0.9+dfsg-7.1ubuntu1 [165 kB]
172s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 libngs-jni amd64 3.0.9+dfsg-7.1ubuntu1 [4842 B]
172s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 libngs-java amd64 3.0.9+dfsg-7.1ubuntu1 [91.1 kB]
172s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 librhino-java all 1.7.15-1 [1354 kB]
172s Get:180 http://ftpmaster.internal/ubuntu plucky/main amd64 libsnappy1v5 amd64 1.2.1-1 [30.4 kB]
172s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsnappy-jni amd64 1.1.10.7-1 [6786 B]
172s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsnappy-java all 1.1.10.7-1 [83.6 kB]
172s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhtsjdk-java all 4.1.3+dfsg-2 [1829 kB]
172s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 libseqan2-dev all 2.4.0+dfsg-16 [1206 kB]
172s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 libspoa7.0.0 amd64 4.1.4-2 [79.1 kB]
172s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 libssw0 amd64 1.1-15 [22.5 kB]
172s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 miniasm amd64 0.3+dfsg-4 [30.3 kB]
172s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 ncbi-data all 6.1.20170106+dfsg2-5 [3966 kB]
172s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 ncbi-blast+ amd64 2.16.0+ds-6build1 [15.8 MB]
172s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 scala-library all 2.11.12-6 [9545 kB]
173s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 pilon all 1.24-4 [495 kB]
173s Get:192 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all amd64 3.13.2-2 [884 B]
173s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-joblib all 1.4.2-3 [205 kB]
173s Get:194 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.2-1 [51.5 kB]
173s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 racon amd64 1.5.0-3 [3113 kB]
173s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 samtools amd64 1.21-1 [655 kB]
173s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnlopt0 amd64 2.7.1-6ubuntu3 [251 kB]
173s Get:198 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 spades amd64 4.0.0+dfsg1-2 [8064 kB]
173s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 bowtie2 amd64 2.5.4-1 [1336 kB]
173s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicycler amd64 0.5.1+dfsg-3 [910 kB]
173s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicycler-data all 0.5.1+dfsg-3 [12.0 MB]
173s Get:202 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB]
174s Fetched 302 MB in 3s (97.3 MB/s)
174s Selecting previously unselected package libgdk-pixbuf2.0-common.
174s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 115743 files and directories currently installed.)
174s Preparing to unpack .../000-libgdk-pixbuf2.0-common_2.42.12+dfsg-2_all.deb ...
174s Unpacking libgdk-pixbuf2.0-common (2.42.12+dfsg-2) ...
174s Selecting previously unselected package libjpeg-turbo8:amd64.
174s Preparing to unpack .../001-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ...
174s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ...
174s Selecting previously unselected package libjpeg8:amd64.
174s Preparing to unpack .../002-libjpeg8_8c-2ubuntu11_amd64.deb ...
174s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ...
174s Selecting previously unselected package libdeflate0:amd64.
174s Preparing to unpack .../003-libdeflate0_1.23-1_amd64.deb ...
174s Unpacking libdeflate0:amd64 (1.23-1) ...
174s Selecting previously unselected package libjbig0:amd64.
174s Preparing to unpack .../004-libjbig0_2.1-6.1ubuntu2_amd64.deb ...
174s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ...
174s Selecting previously unselected package liblerc4:amd64.
174s Preparing to unpack .../005-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ...
174s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ...
174s Selecting previously unselected package libsharpyuv0:amd64.
174s Preparing to unpack .../006-libsharpyuv0_1.5.0-0.1_amd64.deb ...
174s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ...
174s Selecting previously unselected package libwebp7:amd64.
174s Preparing to unpack .../007-libwebp7_1.5.0-0.1_amd64.deb ...
174s Unpacking libwebp7:amd64 (1.5.0-0.1) ...
174s Selecting previously unselected package libtiff6:amd64.
174s Preparing to unpack .../008-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ...
174s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ...
174s Selecting previously unselected package libgdk-pixbuf-2.0-0:amd64.
174s Preparing to unpack .../009-libgdk-pixbuf-2.0-0_2.42.12+dfsg-2_amd64.deb ...
174s Unpacking libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-2) ...
174s Selecting previously unselected package gtk-update-icon-cache.
174s Preparing to unpack .../010-gtk-update-icon-cache_4.18.2+ds-1_amd64.deb ...
174s No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed.
174s No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed.
174s Unpacking gtk-update-icon-cache (4.18.2+ds-1) ...
174s Selecting previously unselected package hicolor-icon-theme.
174s Preparing to unpack .../011-hicolor-icon-theme_0.18-2_all.deb ...
174s Unpacking hicolor-icon-theme (0.18-2) ...
174s Selecting previously unselected package adwaita-icon-theme.
174s Preparing to unpack .../012-adwaita-icon-theme_48.0-1_all.deb ...
174s Unpacking adwaita-icon-theme (48.0-1) ...
174s Selecting previously unselected package at-spi2-common.
174s Preparing to unpack .../013-at-spi2-common_2.56.0-3_all.deb ...
174s Unpacking at-spi2-common (2.56.0-3) ...
174s Selecting previously unselected package m4.
175s Preparing to unpack .../014-m4_1.4.19-7_amd64.deb ...
175s Unpacking m4 (1.4.19-7) ...
175s Selecting previously unselected package autoconf.
175s Preparing to unpack .../015-autoconf_2.72-3ubuntu1_all.deb ...
175s Unpacking autoconf (2.72-3ubuntu1) ...
175s Selecting previously unselected package autotools-dev.
175s Preparing to unpack .../016-autotools-dev_20220109.1_all.deb ...
175s Unpacking autotools-dev (20220109.1) ...
175s Selecting previously unselected package automake.
175s Preparing to unpack .../017-automake_1%3a1.17-3ubuntu1_all.deb ...
175s Unpacking automake (1:1.17-3ubuntu1) ...
175s Selecting previously unselected package autopoint.
175s Preparing to unpack .../018-autopoint_0.23.1-1_all.deb ...
175s Unpacking autopoint (0.23.1-1) ...
175s Selecting previously unselected package libbamtools2.5.2:amd64.
175s Preparing to unpack .../019-libbamtools2.5.2_2.5.2+dfsg-6build1_amd64.deb ...
175s Unpacking libbamtools2.5.2:amd64 (2.5.2+dfsg-6build1) ...
175s Selecting previously unselected package libjsoncpp26:amd64.
175s Preparing to unpack .../020-libjsoncpp26_1.9.6-3_amd64.deb ...
175s Unpacking libjsoncpp26:amd64 (1.9.6-3) ...
175s Selecting previously unselected package bamtools.
175s Preparing to unpack .../021-bamtools_2.5.2+dfsg-6build1_amd64.deb ...
175s Unpacking bamtools (2.5.2+dfsg-6build1) ...
175s Selecting previously unselected package libhtscodecs2:amd64.
175s Preparing to unpack .../022-libhtscodecs2_1.6.1-2_amd64.deb ...
175s Unpacking libhtscodecs2:amd64 (1.6.1-2) ...
175s Selecting previously unselected package libhts3t64:amd64.
175s Preparing to unpack .../023-libhts3t64_1.21+ds-1_amd64.deb ...
175s Unpacking libhts3t64:amd64 (1.21+ds-1) ...
175s Selecting previously unselected package bcftools.
175s Preparing to unpack .../024-bcftools_1.21-1_amd64.deb ...
175s Unpacking bcftools (1.21-1) ...
175s Selecting previously unselected package libisl23:amd64.
175s Preparing to unpack .../025-libisl23_0.27-1_amd64.deb ...
175s Unpacking libisl23:amd64 (0.27-1) ...
175s Selecting previously unselected package libmpc3:amd64.
175s Preparing to unpack .../026-libmpc3_1.3.1-1build2_amd64.deb ...
175s Unpacking libmpc3:amd64 (1.3.1-1build2) ...
175s Selecting previously unselected package cpp-14-x86-64-linux-gnu.
175s Preparing to unpack .../027-cpp-14-x86-64-linux-gnu_14.2.0-19ubuntu1_amd64.deb ...
175s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-19ubuntu1) ...
175s Selecting previously unselected package cpp-14.
175s Preparing to unpack .../028-cpp-14_14.2.0-19ubuntu1_amd64.deb ...
175s Unpacking cpp-14 (14.2.0-19ubuntu1) ...
175s Selecting previously unselected package cpp-x86-64-linux-gnu.
175s Preparing to unpack .../029-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
175s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
175s Selecting previously unselected package cpp.
175s Preparing to unpack .../030-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ...
175s Unpacking cpp (4:14.2.0-1ubuntu1) ...
175s Selecting previously unselected package libcc1-0:amd64.
175s Preparing to unpack .../031-libcc1-0_15-20250319-1ubuntu1_amd64.deb ...
175s Unpacking libcc1-0:amd64 (15-20250319-1ubuntu1) ...
175s Selecting previously unselected package libgomp1:amd64.
175s Preparing to unpack .../032-libgomp1_15-20250319-1ubuntu1_amd64.deb ...
175s Unpacking libgomp1:amd64 (15-20250319-1ubuntu1) ...
175s Selecting previously unselected package libitm1:amd64.
175s Preparing to unpack .../033-libitm1_15-20250319-1ubuntu1_amd64.deb ...
175s Unpacking libitm1:amd64 (15-20250319-1ubuntu1) ...
175s Selecting previously unselected package libasan8:amd64.
175s Preparing to unpack .../034-libasan8_15-20250319-1ubuntu1_amd64.deb ...
175s Unpacking libasan8:amd64 (15-20250319-1ubuntu1) ...
176s Selecting previously unselected package liblsan0:amd64.
176s Preparing to unpack .../035-liblsan0_15-20250319-1ubuntu1_amd64.deb ...
176s Unpacking liblsan0:amd64 (15-20250319-1ubuntu1) ...
176s Selecting previously unselected package libtsan2:amd64.
176s Preparing to unpack .../036-libtsan2_15-20250319-1ubuntu1_amd64.deb ...
176s Unpacking libtsan2:amd64 (15-20250319-1ubuntu1) ...
176s Selecting previously unselected package libubsan1:amd64.
176s Preparing to unpack .../037-libubsan1_15-20250319-1ubuntu1_amd64.deb ...
176s Unpacking libubsan1:amd64 (15-20250319-1ubuntu1) ...
176s Selecting previously unselected package libhwasan0:amd64.
176s Preparing to unpack .../038-libhwasan0_15-20250319-1ubuntu1_amd64.deb ...
176s Unpacking libhwasan0:amd64 (15-20250319-1ubuntu1) ...
176s Selecting previously unselected package libquadmath0:amd64.
176s Preparing to unpack .../039-libquadmath0_15-20250319-1ubuntu1_amd64.deb ...
176s Unpacking libquadmath0:amd64 (15-20250319-1ubuntu1) ...
176s Selecting previously unselected package libgcc-14-dev:amd64.
176s Preparing to unpack .../040-libgcc-14-dev_14.2.0-19ubuntu1_amd64.deb ...
176s Unpacking libgcc-14-dev:amd64 (14.2.0-19ubuntu1) ...
176s Selecting previously unselected package gcc-14-x86-64-linux-gnu.
176s Preparing to unpack .../041-gcc-14-x86-64-linux-gnu_14.2.0-19ubuntu1_amd64.deb ...
176s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-19ubuntu1) ...
176s Selecting previously unselected package gcc-14.
176s Preparing to unpack .../042-gcc-14_14.2.0-19ubuntu1_amd64.deb ...
176s Unpacking gcc-14 (14.2.0-19ubuntu1) ...
176s Selecting previously unselected package gcc-x86-64-linux-gnu.
176s Preparing to unpack .../043-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
176s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
176s Selecting previously unselected package gcc.
176s Preparing to unpack .../044-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ...
176s Unpacking gcc (4:14.2.0-1ubuntu1) ...
176s Selecting previously unselected package libstdc++-14-dev:amd64.
176s Preparing to unpack .../045-libstdc++-14-dev_14.2.0-19ubuntu1_amd64.deb ...
176s Unpacking libstdc++-14-dev:amd64 (14.2.0-19ubuntu1) ...
177s Selecting previously unselected package g++-14-x86-64-linux-gnu.
177s Preparing to unpack .../046-g++-14-x86-64-linux-gnu_14.2.0-19ubuntu1_amd64.deb ...
177s Unpacking g++-14-x86-64-linux-gnu (14.2.0-19ubuntu1) ...
177s Selecting previously unselected package g++-14.
177s Preparing to unpack .../047-g++-14_14.2.0-19ubuntu1_amd64.deb ...
177s Unpacking g++-14 (14.2.0-19ubuntu1) ...
177s Selecting previously unselected package g++-x86-64-linux-gnu.
177s Preparing to unpack .../048-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
177s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
177s Selecting previously unselected package g++.
177s Preparing to unpack .../049-g++_4%3a14.2.0-1ubuntu1_amd64.deb ...
177s Unpacking g++ (4:14.2.0-1ubuntu1) ...
177s Selecting previously unselected package build-essential.
177s Preparing to unpack .../050-build-essential_12.10ubuntu1_amd64.deb ...
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177s Selecting previously unselected package bwa.
177s Preparing to unpack .../051-bwa_0.7.18-1_amd64.deb ...
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177s Selecting previously unselected package ca-certificates-java.
177s Preparing to unpack .../052-ca-certificates-java_20240118_all.deb ...
177s Unpacking ca-certificates-java (20240118) ...
177s Selecting previously unselected package libdconf1:amd64.
177s Preparing to unpack .../053-libdconf1_0.40.0-5_amd64.deb ...
177s Unpacking libdconf1:amd64 (0.40.0-5) ...
177s Selecting previously unselected package dconf-service.
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177s Unpacking dconf-service (0.40.0-5) ...
177s Selecting previously unselected package dconf-gsettings-backend:amd64.
177s Preparing to unpack .../055-dconf-gsettings-backend_0.40.0-5_amd64.deb ...
177s Unpacking dconf-gsettings-backend:amd64 (0.40.0-5) ...
177s Selecting previously unselected package libdebhelper-perl.
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177s Selecting previously unselected package libtool.
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177s Selecting previously unselected package dh-autoreconf.
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177s Selecting previously unselected package libarchive-zip-perl.
177s Preparing to unpack .../059-libarchive-zip-perl_1.68-1_all.deb ...
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177s Selecting previously unselected package libfile-stripnondeterminism-perl.
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177s Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ...
177s Selecting previously unselected package dh-strip-nondeterminism.
177s Preparing to unpack .../061-dh-strip-nondeterminism_1.14.1-2_all.deb ...
177s Unpacking dh-strip-nondeterminism (1.14.1-2) ...
177s Selecting previously unselected package debugedit.
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177s Selecting previously unselected package dwz.
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177s Selecting previously unselected package intltool-debian.
177s Preparing to unpack .../065-intltool-debian_0.35.0+20060710.6_all.deb ...
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177s Selecting previously unselected package po-debconf.
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178s Selecting previously unselected package java-common.
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178s Selecting previously unselected package liblcms2-2:amd64.
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178s Selecting previously unselected package libpcsclite1:amd64.
178s Preparing to unpack .../070-libpcsclite1_2.3.1-1_amd64.deb ...
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178s Selecting previously unselected package openjdk-21-jre-headless:amd64.
178s Preparing to unpack .../071-openjdk-21-jre-headless_21.0.7~7ea-1_amd64.deb ...
178s Unpacking openjdk-21-jre-headless:amd64 (21.0.7~7ea-1) ...
179s Selecting previously unselected package default-jre-headless.
179s Preparing to unpack .../072-default-jre-headless_2%3a1.21-76_amd64.deb ...
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179s Selecting previously unselected package libatk1.0-0t64:amd64.
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179s Selecting previously unselected package libxi6:amd64.
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179s Selecting previously unselected package libatspi2.0-0t64:amd64.
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179s Selecting previously unselected package libatk-bridge2.0-0t64:amd64.
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179s Selecting previously unselected package fonts-dejavu-mono.
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179s Selecting previously unselected package fontconfig-config.
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179s Selecting previously unselected package libfontconfig1:amd64.
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179s Selecting previously unselected package libpixman-1-0:amd64.
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179s Selecting previously unselected package libxcb-render0:amd64.
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179s Selecting previously unselected package libxcb-shm0:amd64.
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179s Selecting previously unselected package libxrender1:amd64.
179s Preparing to unpack .../084-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ...
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179s Selecting previously unselected package libcairo2:amd64.
179s Preparing to unpack .../085-libcairo2_1.18.4-1_amd64.deb ...
179s Unpacking libcairo2:amd64 (1.18.4-1) ...
179s Selecting previously unselected package libcairo-gobject2:amd64.
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179s Selecting previously unselected package libcolord2:amd64.
179s Preparing to unpack .../087-libcolord2_1.4.7-3_amd64.deb ...
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179s Selecting previously unselected package libavahi-common-data:amd64.
179s Preparing to unpack .../088-libavahi-common-data_0.8-16ubuntu2_amd64.deb ...
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179s Selecting previously unselected package libavahi-common3:amd64.
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179s Selecting previously unselected package libavahi-client3:amd64.
179s Preparing to unpack .../090-libavahi-client3_0.8-16ubuntu2_amd64.deb ...
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179s Selecting previously unselected package libcups2t64:amd64.
179s Preparing to unpack .../091-libcups2t64_2.4.11-0ubuntu2_amd64.deb ...
179s Unpacking libcups2t64:amd64 (2.4.11-0ubuntu2) ...
179s Selecting previously unselected package libepoxy0:amd64.
180s Preparing to unpack .../092-libepoxy0_1.5.10-2_amd64.deb ...
180s Unpacking libepoxy0:amd64 (1.5.10-2) ...
180s Selecting previously unselected package libgraphite2-3:amd64.
180s Preparing to unpack .../093-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ...
180s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ...
180s Selecting previously unselected package libharfbuzz0b:amd64.
180s Preparing to unpack .../094-libharfbuzz0b_10.2.0-1_amd64.deb ...
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180s Selecting previously unselected package fontconfig.
180s Preparing to unpack .../095-fontconfig_2.15.0-2.2ubuntu1_amd64.deb ...
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180s Selecting previously unselected package libthai-data.
180s Preparing to unpack .../096-libthai-data_0.1.29-2build1_all.deb ...
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180s Selecting previously unselected package libdatrie1:amd64.
180s Preparing to unpack .../097-libdatrie1_0.2.13-3build1_amd64.deb ...
180s Unpacking libdatrie1:amd64 (0.2.13-3build1) ...
180s Selecting previously unselected package libthai0:amd64.
180s Preparing to unpack .../098-libthai0_0.1.29-2build1_amd64.deb ...
180s Unpacking libthai0:amd64 (0.1.29-2build1) ...
180s Selecting previously unselected package libpango-1.0-0:amd64.
180s Preparing to unpack .../099-libpango-1.0-0_1.56.3-1_amd64.deb ...
180s Unpacking libpango-1.0-0:amd64 (1.56.3-1) ...
180s Selecting previously unselected package libpangoft2-1.0-0:amd64.
180s Preparing to unpack .../100-libpangoft2-1.0-0_1.56.3-1_amd64.deb ...
180s Unpacking libpangoft2-1.0-0:amd64 (1.56.3-1) ...
180s Selecting previously unselected package libpangocairo-1.0-0:amd64.
180s Preparing to unpack .../101-libpangocairo-1.0-0_1.56.3-1_amd64.deb ...
180s Unpacking libpangocairo-1.0-0:amd64 (1.56.3-1) ...
180s Selecting previously unselected package libwayland-client0:amd64.
180s Preparing to unpack .../102-libwayland-client0_1.23.1-3_amd64.deb ...
180s Unpacking libwayland-client0:amd64 (1.23.1-3) ...
180s Selecting previously unselected package libwayland-cursor0:amd64.
180s Preparing to unpack .../103-libwayland-cursor0_1.23.1-3_amd64.deb ...
180s Unpacking libwayland-cursor0:amd64 (1.23.1-3) ...
180s Selecting previously unselected package libwayland-egl1:amd64.
180s Preparing to unpack .../104-libwayland-egl1_1.23.1-3_amd64.deb ...
180s Unpacking libwayland-egl1:amd64 (1.23.1-3) ...
180s Selecting previously unselected package libxcomposite1:amd64.
180s Preparing to unpack .../105-libxcomposite1_1%3a0.4.6-1_amd64.deb ...
180s Unpacking libxcomposite1:amd64 (1:0.4.6-1) ...
180s Selecting previously unselected package libxfixes3:amd64.
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180s Selecting previously unselected package libxcursor1:amd64.
180s Preparing to unpack .../107-libxcursor1_1%3a1.2.3-1_amd64.deb ...
180s Unpacking libxcursor1:amd64 (1:1.2.3-1) ...
180s Selecting previously unselected package libxdamage1:amd64.
180s Preparing to unpack .../108-libxdamage1_1%3a1.1.6-1build1_amd64.deb ...
180s Unpacking libxdamage1:amd64 (1:1.1.6-1build1) ...
180s Selecting previously unselected package libxinerama1:amd64.
180s Preparing to unpack .../109-libxinerama1_2%3a1.1.4-3build1_amd64.deb ...
180s Unpacking libxinerama1:amd64 (2:1.1.4-3build1) ...
180s Selecting previously unselected package libxrandr2:amd64.
180s Preparing to unpack .../110-libxrandr2_2%3a1.5.4-1_amd64.deb ...
180s Unpacking libxrandr2:amd64 (2:1.5.4-1) ...
180s Selecting previously unselected package libgtk-3-common.
180s Preparing to unpack .../111-libgtk-3-common_3.24.49-2ubuntu1_all.deb ...
180s Unpacking libgtk-3-common (3.24.49-2ubuntu1) ...
180s Selecting previously unselected package libgtk-3-0t64:amd64.
180s Preparing to unpack .../112-libgtk-3-0t64_3.24.49-2ubuntu1_amd64.deb ...
180s Unpacking libgtk-3-0t64:amd64 (3.24.49-2ubuntu1) ...
180s Selecting previously unselected package libglvnd0:amd64.
180s Preparing to unpack .../113-libglvnd0_1.7.0-1build1_amd64.deb ...
180s Unpacking libglvnd0:amd64 (1.7.0-1build1) ...
180s Selecting previously unselected package libx11-xcb1:amd64.
180s Preparing to unpack .../114-libx11-xcb1_2%3a1.8.10-2_amd64.deb ...
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180s Selecting previously unselected package libxcb-dri3-0:amd64.
180s Preparing to unpack .../115-libxcb-dri3-0_1.17.0-2_amd64.deb ...
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180s Selecting previously unselected package libxcb-glx0:amd64.
180s Preparing to unpack .../116-libxcb-glx0_1.17.0-2_amd64.deb ...
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180s Selecting previously unselected package libxcb-present0:amd64.
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180s Unpacking libxcb-present0:amd64 (1.17.0-2) ...
180s Selecting previously unselected package libxcb-xfixes0:amd64.
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181s Selecting previously unselected package libxxf86vm1:amd64.
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181s Selecting previously unselected package libpciaccess0:amd64.
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181s Unpacking libpciaccess0:amd64 (0.17-3build1) ...
181s Selecting previously unselected package libdrm-intel1:amd64.
181s Preparing to unpack .../121-libdrm-intel1_2.4.123-1_amd64.deb ...
181s Unpacking libdrm-intel1:amd64 (2.4.123-1) ...
181s Selecting previously unselected package libxcb-randr0:amd64.
181s Preparing to unpack .../122-libxcb-randr0_1.17.0-2_amd64.deb ...
181s Unpacking libxcb-randr0:amd64 (1.17.0-2) ...
181s Selecting previously unselected package libxcb-sync1:amd64.
181s Preparing to unpack .../123-libxcb-sync1_1.17.0-2_amd64.deb ...
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181s Selecting previously unselected package libxshmfence1:amd64.
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181s Unpacking libxshmfence1:amd64 (1.3-1build5) ...
181s Selecting previously unselected package mesa-libgallium:amd64.
181s Preparing to unpack .../125-mesa-libgallium_25.0.1-2ubuntu2_amd64.deb ...
181s Unpacking mesa-libgallium:amd64 (25.0.1-2ubuntu2) ...
181s Selecting previously unselected package libwayland-server0:amd64.
181s Preparing to unpack .../126-libwayland-server0_1.23.1-3_amd64.deb ...
181s Unpacking libwayland-server0:amd64 (1.23.1-3) ...
181s Selecting previously unselected package libgbm1:amd64.
181s Preparing to unpack .../127-libgbm1_25.0.1-2ubuntu2_amd64.deb ...
181s Unpacking libgbm1:amd64 (25.0.1-2ubuntu2) ...
181s Selecting previously unselected package libvulkan1:amd64.
181s Preparing to unpack .../128-libvulkan1_1.4.304.0-1_amd64.deb ...
181s Unpacking libvulkan1:amd64 (1.4.304.0-1) ...
181s Selecting previously unselected package libgl1-mesa-dri:amd64.
181s Preparing to unpack .../129-libgl1-mesa-dri_25.0.1-2ubuntu2_amd64.deb ...
181s Unpacking libgl1-mesa-dri:amd64 (25.0.1-2ubuntu2) ...
181s Selecting previously unselected package libglx-mesa0:amd64.
181s Preparing to unpack .../130-libglx-mesa0_25.0.1-2ubuntu2_amd64.deb ...
181s Unpacking libglx-mesa0:amd64 (25.0.1-2ubuntu2) ...
181s Selecting previously unselected package libglx0:amd64.
181s Preparing to unpack .../131-libglx0_1.7.0-1build1_amd64.deb ...
181s Unpacking libglx0:amd64 (1.7.0-1build1) ...
181s Selecting previously unselected package libgl1:amd64.
181s Preparing to unpack .../132-libgl1_1.7.0-1build1_amd64.deb ...
181s Unpacking libgl1:amd64 (1.7.0-1build1) ...
181s Selecting previously unselected package libasound2-data.
181s Preparing to unpack .../133-libasound2-data_1.2.13-1build1_all.deb ...
181s Unpacking libasound2-data (1.2.13-1build1) ...
181s Selecting previously unselected package libasound2t64:amd64.
181s Preparing to unpack .../134-libasound2t64_1.2.13-1build1_amd64.deb ...
181s Unpacking libasound2t64:amd64 (1.2.13-1build1) ...
181s Selecting previously unselected package libgif7:amd64.
181s Preparing to unpack .../135-libgif7_5.2.2-1ubuntu2_amd64.deb ...
181s Unpacking libgif7:amd64 (5.2.2-1ubuntu2) ...
181s Selecting previously unselected package x11-common.
181s Preparing to unpack .../136-x11-common_1%3a7.7+23ubuntu3_all.deb ...
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181s Selecting previously unselected package libxtst6:amd64.
181s Preparing to unpack .../137-libxtst6_2%3a1.2.5-1_amd64.deb ...
181s Unpacking libxtst6:amd64 (2:1.2.5-1) ...
181s Selecting previously unselected package openjdk-21-jre:amd64.
181s Preparing to unpack .../138-openjdk-21-jre_21.0.7~7ea-1_amd64.deb ...
181s Unpacking openjdk-21-jre:amd64 (21.0.7~7ea-1) ...
181s Selecting previously unselected package default-jre.
181s Preparing to unpack .../139-default-jre_2%3a1.21-76_amd64.deb ...
181s Unpacking default-jre (2:1.21-76) ...
181s Selecting previously unselected package openjdk-21-jdk-headless:amd64.
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181s Unpacking openjdk-21-jdk-headless:amd64 (21.0.7~7ea-1) ...
182s Selecting previously unselected package default-jdk-headless.
182s Preparing to unpack .../141-default-jdk-headless_2%3a1.21-76_amd64.deb ...
182s Unpacking default-jdk-headless (2:1.21-76) ...
182s Selecting previously unselected package openjdk-21-jdk:amd64.
182s Preparing to unpack .../142-openjdk-21-jdk_21.0.7~7ea-1_amd64.deb ...
182s Unpacking openjdk-21-jdk:amd64 (21.0.7~7ea-1) ...
182s Selecting previously unselected package default-jdk.
182s Preparing to unpack .../143-default-jdk_2%3a1.21-76_amd64.deb ...
182s Unpacking default-jdk (2:1.21-76) ...
182s Selecting previously unselected package dh-python.
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182s Unpacking dh-python (6.20250308) ...
182s Selecting previously unselected package unzip.
182s Preparing to unpack .../145-unzip_6.0-28ubuntu6_amd64.deb ...
182s Unpacking unzip (6.0-28ubuntu6) ...
182s Selecting previously unselected package java-wrappers.
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182s Unpacking java-wrappers (0.5) ...
182s Selecting previously unselected package libhamcrest-java.
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182s Unpacking libhamcrest-java (2.2-2) ...
182s Selecting previously unselected package junit4.
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182s Unpacking junit4 (4.13.2-5) ...
182s Selecting previously unselected package libapache-pom-java.
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182s Unpacking libapache-pom-java (33-2) ...
182s Selecting previously unselected package libcommons-collections3-java.
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182s Selecting previously unselected package libcommons-parent-java.
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182s Selecting previously unselected package libcommons-logging-java.
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182s Selecting previously unselected package libcommons-beanutils-java.
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182s Selecting previously unselected package libcommons-codec-java.
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182s Selecting previously unselected package libcommons-collections4-java.
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182s Unpacking libcommons-collections4-java (4.4-2) ...
182s Selecting previously unselected package libcommons-io-java.
182s Preparing to unpack .../156-libcommons-io-java_2.18.0-1_all.deb ...
182s Unpacking libcommons-io-java (2.18.0-1) ...
182s Selecting previously unselected package libcommons-compress-java.
182s Preparing to unpack .../157-libcommons-compress-java_1.27.1-2_all.deb ...
182s Unpacking libcommons-compress-java (1.27.1-2) ...
182s Selecting previously unselected package libcommons-jexl2-java.
182s Preparing to unpack .../158-libcommons-jexl2-java_2.1.1-6_all.deb ...
182s Unpacking libcommons-jexl2-java (2.1.1-6) ...
182s Selecting previously unselected package libcommons-lang-java.
182s Preparing to unpack .../159-libcommons-lang-java_2.6-10_all.deb ...
182s Unpacking libcommons-lang-java (2.6-10) ...
182s Selecting previously unselected package libcommons-lang3-java.
182s Preparing to unpack .../160-libcommons-lang3-java_3.17.0-1_all.deb ...
182s Unpacking libcommons-lang3-java (3.17.0-1) ...
183s Selecting previously unselected package libedlib1:amd64.
183s Preparing to unpack .../161-libedlib1_1.2.7-6build2_amd64.deb ...
183s Unpacking libedlib1:amd64 (1.2.7-6build2) ...
183s Selecting previously unselected package libezmorph-java.
183s Preparing to unpack .../162-libezmorph-java_1.0.6-4_all.deb ...
183s Unpacking libezmorph-java (1.0.6-4) ...
183s Selecting previously unselected package libslf4j-java.
183s Preparing to unpack .../163-libslf4j-java_1.7.32-1_all.deb ...
183s Unpacking libslf4j-java (1.7.32-1) ...
183s Selecting previously unselected package libjaxen-java.
183s Preparing to unpack .../164-libjaxen-java_1.1.6-5_all.deb ...
183s Unpacking libjaxen-java (1.1.6-5) ...
183s Selecting previously unselected package libxml-commons-external-java.
183s Preparing to unpack .../165-libxml-commons-external-java_1.4.01-6_all.deb ...
183s Unpacking libxml-commons-external-java (1.4.01-6) ...
183s Selecting previously unselected package libxml-commons-resolver1.1-java.
183s Preparing to unpack .../166-libxml-commons-resolver1.1-java_1.2-11_all.deb ...
183s Unpacking libxml-commons-resolver1.1-java (1.2-11) ...
183s Selecting previously unselected package libxerces2-java.
183s Preparing to unpack .../167-libxerces2-java_2.12.2-1_all.deb ...
183s Unpacking libxerces2-java (2.12.2-1) ...
183s Selecting previously unselected package libxom-java.
183s Preparing to unpack .../168-libxom-java_1.3.9-1_all.deb ...
183s Unpacking libxom-java (1.3.9-1) ...
183s Selecting previously unselected package libjson-java.
183s Preparing to unpack .../169-libjson-java_3.1.0+dfsg-2_all.deb ...
183s Unpacking libjson-java (3.1.0+dfsg-2) ...
183s Selecting previously unselected package libmbedcrypto16:amd64.
183s Preparing to unpack .../170-libmbedcrypto16_3.6.2-3ubuntu1_amd64.deb ...
183s Unpacking libmbedcrypto16:amd64 (3.6.2-3ubuntu1) ...
183s Selecting previously unselected package libmbedx509-7:amd64.
183s Preparing to unpack .../171-libmbedx509-7_3.6.2-3ubuntu1_amd64.deb ...
183s Unpacking libmbedx509-7:amd64 (3.6.2-3ubuntu1) ...
183s Selecting previously unselected package libmbedtls21:amd64.
183s Preparing to unpack .../172-libmbedtls21_3.6.2-3ubuntu1_amd64.deb ...
183s Unpacking libmbedtls21:amd64 (3.6.2-3ubuntu1) ...
183s Selecting previously unselected package ncbi-vdb-data.
183s Preparing to unpack .../173-ncbi-vdb-data_3.0.9+dfsg-2_all.deb ...
183s Unpacking ncbi-vdb-data (3.0.9+dfsg-2) ...
183s Selecting previously unselected package libncbi-vdb3:amd64.
183s Preparing to unpack .../174-libncbi-vdb3_3.0.9+dfsg-2_amd64.deb ...
183s Unpacking libncbi-vdb3:amd64 (3.0.9+dfsg-2) ...
183s Selecting previously unselected package libncbi-ngs3:amd64.
183s Preparing to unpack .../175-libncbi-ngs3_3.0.9+dfsg-7.1ubuntu1_amd64.deb ...
183s Unpacking libncbi-ngs3:amd64 (3.0.9+dfsg-7.1ubuntu1) ...
183s Selecting previously unselected package libngs-jni:amd64.
183s Preparing to unpack .../176-libngs-jni_3.0.9+dfsg-7.1ubuntu1_amd64.deb ...
183s Unpacking libngs-jni:amd64 (3.0.9+dfsg-7.1ubuntu1) ...
183s Selecting previously unselected package libngs-java:amd64.
183s Preparing to unpack .../177-libngs-java_3.0.9+dfsg-7.1ubuntu1_amd64.deb ...
183s Unpacking libngs-java:amd64 (3.0.9+dfsg-7.1ubuntu1) ...
183s Selecting previously unselected package librhino-java.
183s Preparing to unpack .../178-librhino-java_1.7.15-1_all.deb ...
183s Unpacking librhino-java (1.7.15-1) ...
183s Selecting previously unselected package libsnappy1v5:amd64.
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183s Unpacking libsnappy1v5:amd64 (1.2.1-1) ...
183s Selecting previously unselected package libsnappy-jni.
183s Preparing to unpack .../180-libsnappy-jni_1.1.10.7-1_amd64.deb ...
183s Unpacking libsnappy-jni (1.1.10.7-1) ...
183s Selecting previously unselected package libsnappy-java.
183s Preparing to unpack .../181-libsnappy-java_1.1.10.7-1_all.deb ...
183s Unpacking libsnappy-java (1.1.10.7-1) ...
183s Selecting previously unselected package libhtsjdk-java.
183s Preparing to unpack .../182-libhtsjdk-java_4.1.3+dfsg-2_all.deb ...
183s Unpacking libhtsjdk-java (4.1.3+dfsg-2) ...
183s Selecting previously unselected package libseqan2-dev.
183s Preparing to unpack .../183-libseqan2-dev_2.4.0+dfsg-16_all.deb ...
183s Unpacking libseqan2-dev (2.4.0+dfsg-16) ...
183s Selecting previously unselected package libspoa7.0.0:amd64.
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184s Unpacking libspoa7.0.0:amd64 (4.1.4-2) ...
184s Selecting previously unselected package libssw0:amd64.
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184s Unpacking libssw0:amd64 (1.1-15) ...
184s Selecting previously unselected package miniasm.
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184s Unpacking miniasm (0.3+dfsg-4) ...
184s Selecting previously unselected package ncbi-data.
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184s Unpacking ncbi-data (6.1.20170106+dfsg2-5) ...
184s Selecting previously unselected package ncbi-blast+.
184s Preparing to unpack .../188-ncbi-blast+_2.16.0+ds-6build1_amd64.deb ...
184s Unpacking ncbi-blast+ (2.16.0+ds-6build1) ...
184s Selecting previously unselected package scala-library.
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184s Unpacking scala-library (2.11.12-6) ...
184s Selecting previously unselected package pilon.
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184s Unpacking pilon (1.24-4) ...
184s Selecting previously unselected package python3-all.
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184s Unpacking python3-all (3.13.2-2) ...
184s Selecting previously unselected package python3-joblib.
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184s Unpacking python3-joblib (1.4.2-3) ...
184s Selecting previously unselected package python3-packaging.
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184s Unpacking python3-packaging (24.2-1) ...
184s Selecting previously unselected package racon.
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184s Selecting previously unselected package samtools.
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184s Unpacking samtools (1.21-1) ...
184s Selecting previously unselected package libnlopt0:amd64.
184s Preparing to unpack .../196-libnlopt0_2.7.1-6ubuntu3_amd64.deb ...
184s Unpacking libnlopt0:amd64 (2.7.1-6ubuntu3) ...
184s Selecting previously unselected package spades.
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185s Selecting previously unselected package unicycler-data.
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185s Unpacking unicycler-data (0.5.1+dfsg-3) ...
185s Selecting previously unselected package zlib1g-dev:amd64.
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185s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
185s Setting up libhtscodecs2:amd64 (1.6.1-2) ...
185s Setting up dh-python (6.20250308) ...
185s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ...
185s Setting up libxcb-dri3-0:amd64 (1.17.0-2) ...
185s Setting up liblcms2-2:amd64 (2.16-2) ...
185s Setting up ncbi-data (6.1.20170106+dfsg2-5) ...
185s Setting up libpixman-1-0:amd64 (0.44.0-3) ...
185s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ...
185s Setting up libwayland-server0:amd64 (1.23.1-3) ...
185s Setting up libx11-xcb1:amd64 (2:1.8.10-2) ...
185s Setting up libpciaccess0:amd64 (0.17-3build1) ...
185s Setting up libslf4j-java (1.7.32-1) ...
185s Setting up libxdamage1:amd64 (1:1.1.6-1build1) ...
185s Setting up libxcb-xfixes0:amd64 (1.17.0-2) ...
185s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ...
185s Setting up hicolor-icon-theme (0.18-2) ...
185s Setting up libxi6:amd64 (2:1.8.2-1) ...
185s Setting up java-common (0.76) ...
185s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ...
185s Setting up libdatrie1:amd64 (0.2.13-3build1) ...
185s Setting up python3-joblib (1.4.2-3) ...
185s Setting up miniasm (0.3+dfsg-4) ...
185s Setting up libxcb-render0:amd64 (1.17.0-2) ...
185s Setting up libarchive-zip-perl (1.68-1) ...
185s Setting up bwa (0.7.18-1) ...
185s Setting up libglvnd0:amd64 (1.7.0-1build1) ...
185s Setting up unicycler-data (0.5.1+dfsg-3) ...
185s Setting up libxcb-glx0:amd64 (1.17.0-2) ...
185s Setting up unzip (6.0-28ubuntu6) ...
185s Setting up libdebhelper-perl (13.24.1ubuntu2) ...
185s Setting up libdrm-intel1:amd64 (2.4.123-1) ...
185s Setting up libgdk-pixbuf2.0-common (2.42.12+dfsg-2) ...
185s Setting up x11-common (1:7.7+23ubuntu3) ...
186s Setting up libdeflate0:amd64 (1.23-1) ...
186s Setting up m4 (1.4.19-7) ...
186s Setting up scala-library (2.11.12-6) ...
186s Setting up python3-all (3.13.2-2) ...
186s Setting up libnlopt0:amd64 (2.7.1-6ubuntu3) ...
186s Setting up libxcb-shm0:amd64 (1.17.0-2) ...
186s Setting up libgomp1:amd64 (15-20250319-1ubuntu1) ...
186s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ...
186s Setting up libcolord2:amd64 (1.4.7-3) ...
186s Setting up libxxf86vm1:amd64 (1:1.1.4-1build4) ...
186s Setting up libsnappy1v5:amd64 (1.2.1-1) ...
186s Setting up bowtie2 (2.5.4-1) ...
186s Setting up libseqan2-dev (2.4.0+dfsg-16) ...
186s Setting up libxcb-present0:amd64 (1.17.0-2) ...
186s Setting up libdconf1:amd64 (0.40.0-5) ...
186s Setting up libcommons-collections3-java (3.2.2-3) ...
186s Setting up libasound2-data (1.2.13-1build1) ...
186s Setting up librhino-java (1.7.15-1) ...
186s Setting up autotools-dev (20220109.1) ...
186s Setting up python3-packaging (24.2-1) ...
186s Setting up libasound2t64:amd64 (1.2.13-1build1) ...
186s Setting up libjaxen-java (1.1.6-5) ...
186s Setting up libepoxy0:amd64 (1.5.10-2) ...
186s Setting up libxfixes3:amd64 (1:6.0.0-2build1) ...
186s Setting up libxcb-sync1:amd64 (1.17.0-2) ...
186s Setting up libjsoncpp26:amd64 (1.9.6-3) ...
186s Setting up libapache-pom-java (33-2) ...
186s Setting up libavahi-common-data:amd64 (0.8-16ubuntu2) ...
186s Setting up libatspi2.0-0t64:amd64 (2.56.0-3) ...
186s Setting up libquadmath0:amd64 (15-20250319-1ubuntu1) ...
186s Setting up libxinerama1:amd64 (2:1.1.4-3build1) ...
186s Setting up fonts-dejavu-mono (2.37-8) ...
186s Setting up libspoa7.0.0:amd64 (4.1.4-2) ...
186s Setting up libxml-commons-resolver1.1-java (1.2-11) ...
186s Setting up libmpc3:amd64 (1.3.1-1build2) ...
186s Setting up libxrandr2:amd64 (2:1.5.4-1) ...
186s Setting up autopoint (0.23.1-1) ...
186s Setting up fonts-dejavu-core (2.37-8) ...
186s Setting up libpcsclite1:amd64 (2.3.1-1) ...
186s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ...
186s Setting up libbamtools2.5.2:amd64 (2.5.2+dfsg-6build1) ...
186s Setting up libhamcrest-java (2.2-2) ...
186s Setting up libvulkan1:amd64 (1.4.304.0-1) ...
186s Setting up autoconf (2.72-3ubuntu1) ...
186s Setting up libwebp7:amd64 (1.5.0-0.1) ...
186s Setting up libubsan1:amd64 (15-20250319-1ubuntu1) ...
186s Setting up libgif7:amd64 (5.2.2-1ubuntu2) ...
186s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
186s Setting up libedlib1:amd64 (1.2.7-6build2) ...
186s Setting up dwz (0.15-1build6) ...
186s Setting up libxshmfence1:amd64 (1.3-1build5) ...
186s Setting up libhwasan0:amd64 (15-20250319-1ubuntu1) ...
186s Setting up at-spi2-common (2.56.0-3) ...
186s Setting up bamtools (2.5.2+dfsg-6build1) ...
186s Setting up libxcb-randr0:amd64 (1.17.0-2) ...
186s Setting up libasan8:amd64 (15-20250319-1ubuntu1) ...
186s Setting up libxml-commons-external-java (1.4.01-6) ...
186s Setting up debugedit (1:5.1-2) ...
186s Setting up libhts3t64:amd64 (1.21+ds-1) ...
186s Setting up libharfbuzz0b:amd64 (10.2.0-1) ...
186s Setting up ncbi-vdb-data (3.0.9+dfsg-2) ...
186s Setting up libthai-data (0.1.29-2build1) ...
186s Setting up libwayland-egl1:amd64 (1.23.1-3) ...
186s Setting up libmbedcrypto16:amd64 (3.6.2-3ubuntu1) ...
186s Setting up libtsan2:amd64 (15-20250319-1ubuntu1) ...
186s Setting up ca-certificates-java (20240118) ...
186s No JRE found. Skipping Java certificates setup.
186s Setting up libxerces2-java (2.12.2-1) ...
186s Setting up libisl23:amd64 (0.27-1) ...
186s Setting up libsnappy-jni (1.1.10.7-1) ...
186s Setting up libezmorph-java (1.0.6-4) ...
186s Setting up libxcomposite1:amd64 (1:0.4.6-1) ...
186s Setting up libssw0:amd64 (1.1-15) ...
186s Setting up libcc1-0:amd64 (15-20250319-1ubuntu1) ...
186s Setting up liblsan0:amd64 (15-20250319-1ubuntu1) ...
186s Setting up libitm1:amd64 (15-20250319-1ubuntu1) ...
186s Setting up libwayland-client0:amd64 (1.23.1-3) ...
186s Setting up libjpeg8:amd64 (8c-2ubuntu11) ...
186s Setting up automake (1:1.17-3ubuntu1) ...
186s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
186s Setting up libfile-stripnondeterminism-perl (1.14.1-2) ...
186s Setting up mesa-libgallium:amd64 (25.0.1-2ubuntu2) ...
186s Setting up gettext (0.23.1-1) ...
186s Setting up java-wrappers (0.5) ...
186s Setting up libatk1.0-0t64:amd64 (2.56.0-3) ...
186s Setting up openjdk-21-jre-headless:amd64 (21.0.7~7ea-1) ...
186s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode
186s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode
186s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
186s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
186s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
186s Setting up libgbm1:amd64 (25.0.1-2ubuntu2) ...
186s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ...
186s Setting up libxtst6:amd64 (2:1.2.5-1) ...
186s Setting up libxcursor1:amd64 (1:1.2.3-1) ...
186s Setting up libgl1-mesa-dri:amd64 (25.0.1-2ubuntu2) ...
186s Setting up bcftools (1.21-1) ...
186s Setting up libcommons-parent-java (56-1) ...
186s Setting up libavahi-common3:amd64 (0.8-16ubuntu2) ...
186s Setting up libcommons-logging-java (1.3.0-1ubuntu1) ...
186s Setting up dconf-service (0.40.0-5) ...
186s Setting up libxom-java (1.3.9-1) ...
186s Setting up libcommons-lang-java (2.6-10) ...
186s Setting up samtools (1.21-1) ...
186s Setting up intltool-debian (0.35.0+20060710.6) ...
186s Setting up libcommons-jexl2-java (2.1.1-6) ...
186s Setting up libthai0:amd64 (0.1.29-2build1) ...
186s Setting up libmbedx509-7:amd64 (3.6.2-3ubuntu1) ...
186s Setting up racon (1.5.0-3) ...
186s Setting up libcommons-collections4-java (4.4-2) ...
186s Setting up cpp-14-x86-64-linux-gnu (14.2.0-19ubuntu1) ...
186s Setting up libcommons-lang3-java (3.17.0-1) ...
186s Setting up cpp-14 (14.2.0-19ubuntu1) ...
186s Setting up libmbedtls21:amd64 (3.6.2-3ubuntu1) ...
186s Setting up dh-strip-nondeterminism (1.14.1-2) ...
186s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ...
186s Setting up libwayland-cursor0:amd64 (1.23.1-3) ...
186s Setting up libcommons-beanutils-java (1.9.4-2) ...
186s Setting up spades (4.0.0+dfsg1-2) ...
187s Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-2) ...
187s Setting up libsnappy-java (1.1.10.7-1) ...
187s Setting up libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ...
187s Setting up libgcc-14-dev:amd64 (14.2.0-19ubuntu1) ...
187s Setting up libcommons-codec-java (1.17.1-1) ...
187s Setting up libstdc++-14-dev:amd64 (14.2.0-19ubuntu1) ...
187s Setting up libavahi-client3:amd64 (0.8-16ubuntu2) ...
187s Setting up cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
187s Setting up libatk-bridge2.0-0t64:amd64 (2.56.0-3) ...
187s Setting up gtk-update-icon-cache (4.18.2+ds-1) ...
187s Setting up fontconfig (2.15.0-2.2ubuntu1) ...
189s Regenerating fonts cache... done.
189s Setting up libglx-mesa0:amd64 (25.0.1-2ubuntu2) ...
189s Setting up libglx0:amd64 (1.7.0-1build1) ...
189s Setting up dconf-gsettings-backend:amd64 (0.40.0-5) ...
189s Setting up libcommons-io-java (2.18.0-1) ...
189s Setting up po-debconf (1.0.21+nmu1) ...
189s Setting up libpango-1.0-0:amd64 (1.56.3-1) ...
189s Setting up libncbi-vdb3:amd64 (3.0.9+dfsg-2) ...
189s Setting up libcairo2:amd64 (1.18.4-1) ...
189s Setting up ncbi-blast+ (2.16.0+ds-6build1) ...
189s Setting up libgl1:amd64 (1.7.0-1build1) ...
189s Setting up adwaita-icon-theme (48.0-1) ...
189s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode
189s Setting up cpp (4:14.2.0-1ubuntu1) ...
189s Setting up libcairo-gobject2:amd64 (1.18.4-1) ...
189s Setting up gcc-14-x86-64-linux-gnu (14.2.0-19ubuntu1) ...
189s Setting up libpangoft2-1.0-0:amd64 (1.56.3-1) ...
189s Setting up libcups2t64:amd64 (2.4.11-0ubuntu2) ...
189s Setting up libgtk-3-common (3.24.49-2ubuntu1) ...
189s Setting up libpangocairo-1.0-0:amd64 (1.56.3-1) ...
189s Setting up libncbi-ngs3:amd64 (3.0.9+dfsg-7.1ubuntu1) ...
189s Setting up libngs-jni:amd64 (3.0.9+dfsg-7.1ubuntu1) ...
189s Setting up gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
189s Setting up libcommons-compress-java (1.27.1-2) ...
189s Setting up gcc-14 (14.2.0-19ubuntu1) ...
189s Setting up g++-14-x86-64-linux-gnu (14.2.0-19ubuntu1) ...
189s Setting up g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
189s Setting up g++-14 (14.2.0-19ubuntu1) ...
189s Setting up libngs-java:amd64 (3.0.9+dfsg-7.1ubuntu1) ...
189s Setting up libtool (2.5.4-4) ...
189s Setting up gcc (4:14.2.0-1ubuntu1) ...
189s Setting up dh-autoreconf (20) ...
189s Setting up g++ (4:14.2.0-1ubuntu1) ...
189s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
189s Setting up build-essential (12.10ubuntu1) ...
189s Setting up debhelper (13.24.1ubuntu2) ...
189s Processing triggers for man-db (2.13.0-1) ...
190s Processing triggers for libglib2.0-0t64:amd64 (2.84.0-2) ...
190s Setting up libgtk-3-0t64:amd64 (3.24.49-2ubuntu1) ...
190s Processing triggers for install-info (7.1.1-1) ...
190s Processing triggers for libc-bin (2.41-6ubuntu1) ...
190s Processing triggers for ca-certificates-java (20240118) ...
191s Adding debian:ACCVRAIZ1.pem
191s Adding debian:AC_RAIZ_FNMT-RCM.pem
191s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem
191s Adding debian:ANF_Secure_Server_Root_CA.pem
191s Adding debian:Actalis_Authentication_Root_CA.pem
191s Adding debian:AffirmTrust_Commercial.pem
191s Adding debian:AffirmTrust_Networking.pem
191s Adding debian:AffirmTrust_Premium.pem
191s Adding debian:AffirmTrust_Premium_ECC.pem
191s Adding debian:Amazon_Root_CA_1.pem
191s Adding debian:Amazon_Root_CA_2.pem
191s Adding debian:Amazon_Root_CA_3.pem
191s Adding debian:Amazon_Root_CA_4.pem
191s Adding debian:Atos_TrustedRoot_2011.pem
191s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem
191s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem
191s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
191s Adding debian:BJCA_Global_Root_CA1.pem
191s Adding debian:BJCA_Global_Root_CA2.pem
191s Adding debian:Baltimore_CyberTrust_Root.pem
191s Adding debian:Buypass_Class_2_Root_CA.pem
191s Adding debian:Buypass_Class_3_Root_CA.pem
191s Adding debian:CA_Disig_Root_R2.pem
191s Adding debian:CFCA_EV_ROOT.pem
191s Adding debian:COMODO_Certification_Authority.pem
191s Adding debian:COMODO_ECC_Certification_Authority.pem
191s Adding debian:COMODO_RSA_Certification_Authority.pem
191s Adding debian:Certainly_Root_E1.pem
191s Adding debian:Certainly_Root_R1.pem
191s Adding debian:Certigna.pem
191s Adding debian:Certigna_Root_CA.pem
191s Adding debian:Certum_EC-384_CA.pem
191s Adding debian:Certum_Trusted_Network_CA.pem
191s Adding debian:Certum_Trusted_Network_CA_2.pem
191s Adding debian:Certum_Trusted_Root_CA.pem
191s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem
191s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem
191s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem
191s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem
191s Adding debian:Comodo_AAA_Services_root.pem
191s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem
191s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem
191s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
191s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
191s Adding debian:DigiCert_Assured_ID_Root_CA.pem
191s Adding debian:DigiCert_Assured_ID_Root_G2.pem
191s Adding debian:DigiCert_Assured_ID_Root_G3.pem
191s Adding debian:DigiCert_Global_Root_CA.pem
191s Adding debian:DigiCert_Global_Root_G2.pem
191s Adding debian:DigiCert_Global_Root_G3.pem
191s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
191s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem
191s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem
191s Adding debian:DigiCert_Trusted_Root_G4.pem
191s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
191s Adding debian:Entrust_Root_Certification_Authority.pem
191s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
191s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
191s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem
191s Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem
191s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem
191s Adding debian:GLOBALTRUST_2020.pem
191s Adding debian:GTS_Root_R1.pem
191s Adding debian:GTS_Root_R2.pem
191s Adding debian:GTS_Root_R3.pem
191s Adding debian:GTS_Root_R4.pem
191s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
191s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
191s Adding debian:GlobalSign_Root_CA.pem
191s Adding debian:GlobalSign_Root_CA_-_R3.pem
191s Adding debian:GlobalSign_Root_CA_-_R6.pem
191s Adding debian:GlobalSign_Root_E46.pem
191s Adding debian:GlobalSign_Root_R46.pem
191s Adding debian:Go_Daddy_Class_2_CA.pem
191s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
191s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem
191s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem
191s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
191s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
191s Adding debian:HiPKI_Root_CA_-_G1.pem
191s Adding debian:Hongkong_Post_Root_CA_3.pem
191s Adding debian:ISRG_Root_X1.pem
191s Adding debian:ISRG_Root_X2.pem
191s Adding debian:IdenTrust_Commercial_Root_CA_1.pem
191s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
191s Adding debian:Izenpe.com.pem
191s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
191s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem
191s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem
191s Adding debian:NAVER_Global_Root_Certification_Authority.pem
191s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
191s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
191s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem
191s Adding debian:QuoVadis_Root_CA_1_G3.pem
191s Adding debian:QuoVadis_Root_CA_2.pem
191s Adding debian:QuoVadis_Root_CA_2_G3.pem
191s Adding debian:QuoVadis_Root_CA_3.pem
191s Adding debian:QuoVadis_Root_CA_3_G3.pem
191s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem
191s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem
191s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem
191s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem
191s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem
191s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem
191s Adding debian:SZAFIR_ROOT_CA2.pem
191s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem
191s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem
191s Adding debian:SecureSign_RootCA11.pem
191s Adding debian:SecureSign_Root_CA12.pem
191s Adding debian:SecureSign_Root_CA14.pem
191s Adding debian:SecureSign_Root_CA15.pem
191s Adding debian:SecureTrust_CA.pem
191s Adding debian:Secure_Global_CA.pem
191s Adding debian:Security_Communication_ECC_RootCA1.pem
191s Adding debian:Security_Communication_RootCA2.pem
191s Adding debian:Security_Communication_RootCA3.pem
191s Adding debian:Starfield_Class_2_CA.pem
191s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
191s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
191s Adding debian:SwissSign_Gold_CA_-_G2.pem
191s Adding debian:SwissSign_Silver_CA_-_G2.pem
191s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
191s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
191s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
191s Adding debian:TWCA_CYBER_Root_CA.pem
191s Adding debian:TWCA_Global_Root_CA.pem
191s Adding debian:TWCA_Root_Certification_Authority.pem
191s Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem
191s Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem
191s Adding debian:TeliaSonera_Root_CA_v1.pem
191s Adding debian:Telia_Root_CA_v2.pem
191s Adding debian:TrustAsia_Global_Root_CA_G3.pem
191s Adding debian:TrustAsia_Global_Root_CA_G4.pem
191s Adding debian:Trustwave_Global_Certification_Authority.pem
191s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem
191s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem
191s Adding debian:TunTrust_Root_CA.pem
191s Adding debian:UCA_Extended_Validation_Root.pem
191s Adding debian:UCA_Global_G2_Root.pem
191s Adding debian:USERTrust_ECC_Certification_Authority.pem
191s Adding debian:USERTrust_RSA_Certification_Authority.pem
191s Adding debian:XRamp_Global_CA_Root.pem
191s Adding debian:certSIGN_ROOT_CA.pem
191s Adding debian:certSIGN_Root_CA_G2.pem
191s Adding debian:e-Szigno_Root_CA_2017.pem
191s Adding debian:ePKI_Root_Certification_Authority.pem
191s Adding debian:emSign_ECC_Root_CA_-_C3.pem
191s Adding debian:emSign_ECC_Root_CA_-_G3.pem
191s Adding debian:emSign_Root_CA_-_C1.pem
191s Adding debian:emSign_Root_CA_-_G1.pem
191s Adding debian:vTrus_ECC_Root_CA.pem
191s Adding debian:vTrus_Root_CA.pem
191s done.
191s Setting up openjdk-21-jre:amd64 (21.0.7~7ea-1) ...
191s Setting up junit4 (4.13.2-5) ...
191s Setting up openjdk-21-jdk-headless:amd64 (21.0.7~7ea-1) ...
191s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode
191s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode
191s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode
191s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode
191s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode
191s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode
191s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode
191s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode
191s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode
191s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode
191s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode
191s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode
191s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode
191s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode
191s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode
191s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode
191s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode
191s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode
191s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode
191s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode
191s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode
191s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jwebserver to provide /usr/bin/jwebserver (jwebserver) in auto mode
191s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode
191s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode
191s Setting up default-jre-headless (2:1.21-76) ...
191s Setting up default-jre (2:1.21-76) ...
191s Setting up openjdk-21-jdk:amd64 (21.0.7~7ea-1) ...
191s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode
191s Setting up default-jdk-headless (2:1.21-76) ...
191s Setting up libjson-java (3.1.0+dfsg-2) ...
191s Setting up libhtsjdk-java (4.1.3+dfsg-2) ...
191s Setting up default-jdk (2:1.21-76) ...
191s Setting up pilon (1.24-4) ...
191s Setting up unicycler (0.5.1+dfsg-3) ...
192s autopkgtest [22:10:30]: test run-unit-test: [-----------------------
192s 
192s Starting Unicycler (2025-03-25 22:10:30)
192s     Welcome to Unicycler, an assembly pipeline for bacterial genomes. Since you
192s provided only short reads, Unicycler will essentially function as a SPAdes-
192s optimiser. It will try many k-mer sizes, choose the best based on contig length
192s and graph connectivity, and scaffold the graph using SPAdes repeat resolution.
192s     For more information, please see https://github.com/rrwick/Unicycler
192s 
192s Command: /usr/bin/unicycler -1 short_reads_1.fastq.gz -2 short_reads_2.fastq.gz -o illumina_assembly
192s 
192s Unicycler version: v0.5.1
192s Using 2 threads
192s 
192s Making output directory:
192s   /tmp/autopkgtest.LvUgdY/autopkgtest_tmp/illumina_assembly
192s 
192s Dependencies:
192s   Program       Version   Status  
192s   spades        4.0.0     good    
192s   racon                   not used
192s   makeblastdb   2.16.0+   good    
192s   tblastn       2.16.0+   good    
193s 
193s 
193s Choosing k-mer range for assembly (2025-03-25 22:10:31)
193s     Unicycler chooses a k-mer range for SPAdes based on the length of the input
193s reads. It uses a wide range of many k-mer sizes to maximise the chance of
193s finding an ideal assembly.
193s 
193s SPAdes maximum k-mer: 127
193s Median read length: 125
193s K-mer range: 25, 49, 67, 81, 93, 103, 111, 119
193s 
193s 
193s SPAdes assemblies (2025-03-25 22:10:31)
193s     Unicycler now uses SPAdes to assemble the short reads. It scores the
193s assembly graph for each k-mer using the number of contigs (fewer is better) and
193s the number of dead ends (fewer is better). The score function is 1/(c*(d+2)),
193s where c is the contig count and d is the dead end count.
193s 
193s spades -o /tmp/autopkgtest.LvUgdY/autopkgtest_tmp/illumina_assembly/spades_assembly -k 25 --threads 2 --gfa11 --isolate -1 /tmp/autopkgtest.LvUgdY/autopkgtest_tmp/short_reads_1.fastq.gz -2 /tmp/autopkgtest.LvUgdY/autopkgtest_tmp/short_reads_2.fastq.gz -m 1024
194s Error: SPAdes encountered an error:
194s 
194s autopkgtest [22:10:32]: test run-unit-test: -----------------------]
194s autopkgtest [22:10:32]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
194s run-unit-test        FAIL non-zero exit status 1
194s autopkgtest [22:10:32]: @@@@@@@@@@@@@@@@@@@@ summary
194s run-unit-test        FAIL non-zero exit status 1
210s nova [W] Skipping flock for amd64
210s Creating nova instance adt-plucky-amd64-unicycler-20250325-220718-juju-7f2275-prod-proposed-migration-environment-2-1b6c69c4-1e27-4b5f-9bea-f7fbfd517128 from image adt/ubuntu-plucky-amd64-server-20250306.img (UUID 60d877d7-b74c-4f24-920d-f4570db0a338)...
210s nova [W] Timed out waiting for 252ab314-4cfc-4ac8-b7f7-229f3d2da467 to get deleted.