0s autopkgtest [10:43:49]: starting date and time: 2025-03-13 10:43:49+0000 0s autopkgtest [10:43:49]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [10:43:49]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.qu_gvrgo/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:spades --apt-upgrade unicycler --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=spades/4.0.0+dfsg1-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-13.secgroup --name adt-plucky-amd64-unicycler-20250313-104349-juju-7f2275-prod-proposed-migration-environment-2-00cd3ec4-29b1-4d87-b565-d1036106183d --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 82s autopkgtest [10:45:11]: testbed dpkg architecture: amd64 82s autopkgtest [10:45:11]: testbed apt version: 2.9.31ubuntu1 83s autopkgtest [10:45:12]: @@@@@@@@@@@@@@@@@@@@ test bed setup 83s autopkgtest [10:45:12]: testbed release detected to be: None 84s autopkgtest [10:45:13]: updating testbed package index (apt update) 84s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 85s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 85s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 85s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 85s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [11.5 kB] 85s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [396 kB] 85s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [43.9 kB] 85s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [61.3 kB] 85s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [47.7 kB] 85s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [162 kB] 85s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [348 kB] 86s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [7592 B] 86s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [3536 B] 86s Fetched 1192 kB in 2s (692 kB/s) 87s Reading package lists... 87s Reading package lists... 87s Building dependency tree... 87s Reading state information... 88s Calculating upgrade... 88s Calculating upgrade... 88s The following package was automatically installed and is no longer required: 88s libnl-genl-3-200 88s Use 'sudo apt autoremove' to remove it. 88s The following NEW packages will be installed: 88s libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-7 88s linux-headers-6.14.0-7-generic linux-image-6.14.0-7-generic 88s linux-modules-6.14.0-7-generic linux-modules-extra-6.14.0-7-generic 88s linux-tools-6.14.0-7 linux-tools-6.14.0-7-generic pnp.ids 88s The following packages will be upgraded: 88s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 88s curl dosfstools exfatprogs fwupd gcc-15-base gir1.2-girepository-2.0 88s gir1.2-glib-2.0 htop hwdata initramfs-tools initramfs-tools-bin 88s initramfs-tools-core libapparmor1 libapt-pkg7.0 libassuan9 libatomic1 88s libaudit-common libaudit1 libbinutils libbrotli1 libc-bin libc-dev-bin libc6 88s libc6-dev libcap-ng0 libctf-nobfd0 libctf0 libcurl3t64-gnutls libcurl4t64 88s libestr0 libftdi1-2 libfwupd3 libgcc-s1 libgirepository-1.0-1 88s libglib2.0-0t64 libglib2.0-data libgpgme11t64 libgprofng0 libjemalloc2 88s liblz4-1 liblzma5 libncurses6 libncursesw6 libnewt0.52 libnl-3-200 88s libnl-genl-3-200 libnl-route-3-200 libnss-systemd libpam-systemd 88s libparted2t64 libpci3 libpython3-stdlib libseccomp2 libselinux1 88s libsemanage-common libsemanage2 libsframe1 libsqlite3-0 libstdc++6 88s libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 linux-firmware 88s linux-generic linux-headers-generic linux-headers-virtual 88s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 88s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 88s parted pci.ids pciutils python-apt-common python3 python3-apt python3-bcrypt 88s python3-cffi-backend python3-dbus python3-gi python3-lazr.uri 88s python3-markupsafe python3-minimal python3-newt python3-rpds-py 88s python3-systemd python3-yaml rsync rsyslog systemd systemd-cryptsetup 88s systemd-resolved systemd-sysv systemd-timesyncd ubuntu-kernel-accessories 88s ubuntu-minimal ubuntu-standard udev whiptail xz-utils 88s 114 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. 88s Need to get 818 MB of archives. 88s After this operation, 325 MB of additional disk space will be used. 88s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 89s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 89s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 90s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 93s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 95s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 95s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-7.7 [1723 kB] 97s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 97s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 97s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 97s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 97s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 97s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 97s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 97s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 97s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 98s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 98s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 98s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 98s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 98s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 100s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 101s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 101s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 101s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 101s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 101s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 101s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 101s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 101s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 101s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 101s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 101s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.32ubuntu1 [1138 kB] 102s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.32ubuntu1 [1439 kB] 102s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.32ubuntu1 [222 kB] 102s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 102s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 102s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 102s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 102s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 102s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 102s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 103s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 103s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 103s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 103s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 103s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 103s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 103s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 103s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 103s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 103s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 103s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 103s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 103s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 104s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 104s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 104s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 104s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 104s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 104s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 104s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 104s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 104s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 104s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 104s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 104s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 105s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 105s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 105s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 105s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 105s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 105s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 105s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 105s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 105s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 105s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 105s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 105s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 105s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 105s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 105s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 106s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 106s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 106s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 106s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 106s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 106s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 106s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 106s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 106s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 107s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 107s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 107s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 107s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 107s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 107s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 128s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 128s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 128s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 128s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 129s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 129s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 129s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 129s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-7-generic amd64 6.14.0-7.7 [41.2 MB] 131s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-7-generic amd64 6.14.0-7.7 [15.3 MB] 131s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-7-generic amd64 6.14.0-7.7 [120 MB] 137s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-7.7+1 [1736 B] 137s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-7.7+1 [11.1 kB] 137s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-7.7+1 [1724 B] 137s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-7.7+1 [11.1 kB] 137s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-7.7+1 [1648 B] 137s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-7 all 6.14.0-7.7 [14.2 MB] 137s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-7-generic amd64 6.14.0-7.7 [3859 kB] 137s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-7.7+1 [11.0 kB] 137s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-7.7 [521 kB] 137s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-7 amd64 6.14.0-7.7 [6147 kB] 137s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-7-generic amd64 6.14.0-7.7 [1612 B] 137s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 137s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 137s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 137s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 137s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 137s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 138s Preconfiguring packages ... 138s Fetched 818 MB in 49s (16.6 MB/s) 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109140 files and directories currently installed.) 138s Preparing to unpack .../ncurses-bin_6.5+20250216-2_amd64.deb ... 138s Unpacking ncurses-bin (6.5+20250216-2) over (6.5+20250216-1) ... 138s Setting up ncurses-bin (6.5+20250216-2) ... 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109140 files and directories currently installed.) 138s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu1_amd64.deb ... 138s Unpacking libc-dev-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 138s Preparing to unpack .../libc6-dev_2.41-1ubuntu1_amd64.deb ... 138s Unpacking libc6-dev:amd64 (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 138s Preparing to unpack .../locales_2.41-1ubuntu1_all.deb ... 138s Unpacking locales (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 139s Preparing to unpack .../libc6_2.41-1ubuntu1_amd64.deb ... 139s Checking for services that may need to be restarted... 139s Checking init scripts... 139s Checking for services that may need to be restarted... 139s Checking init scripts... 139s Stopping some services possibly affected by the upgrade (will be restarted later): 139s cron: stopping...done. 139s 139s Unpacking libc6:amd64 (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 139s Setting up libc6:amd64 (2.41-1ubuntu1) ... 139s Checking for services that may need to be restarted... 139s Checking init scripts... 139s Restarting services possibly affected by the upgrade: 139s cron: restarting...done. 139s 139s Services restarted successfully. 139s (Reading database ... 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libnl-route-3-200:amd64 (3.7.0-1) over (3.7.0-0.3build2) ... 147s Preparing to unpack .../24-libnl-3-200_3.7.0-1_amd64.deb ... 147s Unpacking libnl-3-200:amd64 (3.7.0-1) over (3.7.0-0.3build2) ... 147s Preparing to unpack .../25-parted_3.6-5_amd64.deb ... 147s Unpacking parted (3.6-5) over (3.6-4build1) ... 147s Preparing to unpack .../26-libparted2t64_3.6-5_amd64.deb ... 147s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 147s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 147s Unpacking libparted2t64:amd64 (3.6-5) over (3.6-4build1) ... 147s Preparing to unpack .../27-pci.ids_0.0~2025.03.09-1_all.deb ... 147s Unpacking pci.ids (0.0~2025.03.09-1) over (0.0~2025.02.12-1) ... 147s Preparing to unpack .../28-pciutils_1%3a3.13.0-2_amd64.deb ... 147s Unpacking pciutils (1:3.13.0-2) over (1:3.13.0-1) ... 147s Preparing 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python3-markupsafe (2.1.5-1build4) over (2.1.5-1build3) ... 158s Preparing to unpack .../74-python3-rpds-py_0.21.0-2ubuntu2_amd64.deb ... 158s Unpacking python3-rpds-py (0.21.0-2ubuntu2) over (0.21.0-2ubuntu1) ... 158s Preparing to unpack .../75-python3-systemd_235-1build6_amd64.deb ... 158s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 158s Preparing to unpack .../76-ubuntu-kernel-accessories_1.549_amd64.deb ... 158s Unpacking ubuntu-kernel-accessories (1.549) over (1.548) ... 158s Preparing to unpack .../77-python3-bcrypt_4.2.0-2.1build1_amd64.deb ... 158s Unpacking python3-bcrypt (4.2.0-2.1build1) over (4.2.0-2.1) ... 158s Setting up media-types (13.0.0) ... 158s Installing new version of config file /etc/mime.types ... 158s Setting up linux-modules-6.14.0-7-generic (6.14.0-7.7) ... 160s Setting up ubuntu-kernel-accessories (1.549) ... 160s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 160s Setting up pci.ids (0.0~2025.03.09-1) ... 160s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 160s Setting up apt-utils (2.9.32ubuntu1) ... 160s Setting up libdebuginfod-common (0.192-4) ... 160s Setting up exfatprogs (1.2.8-1) ... 160s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 160s Setting up libestr0:amd64 (0.1.11-2) ... 160s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 160s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 160s Setting up dosfstools (4.2-1.2) ... 160s Setting up rsyslog (8.2412.0-2ubuntu2) ... 161s info: The user `syslog' is already a member of `adm'. 162s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 162s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 162s Setting up linux-libc-dev:amd64 (6.14.0-7.7) ... 162s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 162s Setting up systemd (257.3-1ubuntu3) ... 162s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 162s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 162s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 163s Setting up libparted2t64:amd64 (3.6-5) ... 163s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 163s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 163s Setting up libjemalloc2:amd64 (5.3.0-3) ... 163s Setting up locales (2.41-1ubuntu1) ... 163s Installing new version of config file /etc/locale.alias ... 163s Generating locales (this might take a while)... 165s en_US.UTF-8... done 165s Generation complete. 165s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 165s Setting up linux-modules-extra-6.14.0-7-generic (6.14.0-7.7) ... 167s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 167s Installing new version of config file /etc/apparmor.d/fusermount3 ... 167s Installing new version of config file /etc/apparmor.d/lsusb ... 167s Installing new version of config file /etc/apparmor.d/openvpn ... 168s Reloading AppArmor profiles 169s Setting up libftdi1-2:amd64 (1.5-8build1) ... 169s Setting up libglib2.0-data (2.84.0-1) ... 169s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 169s Setting up linux-headers-6.14.0-7 (6.14.0-7.7) ... 169s Setting up libncurses6:amd64 (6.5+20250216-2) ... 169s Setting up xz-utils (5.6.4-1) ... 169s Setting up linux-image-6.14.0-7-generic (6.14.0-7.7) ... 171s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 171s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 171s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-7-generic 171s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-7-generic 171s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 172s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 172s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 172s Setting up udev 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Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 175s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 175s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 175s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 175s Setting up curl (8.12.1-3ubuntu1) ... 175s Setting up initramfs-tools-core (0.146ubuntu1) ... 175s Setting up linux-tools-common (6.14.0-7.7) ... 175s Setting up python3-systemd (235-1build6) ... 175s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 175s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 175s Setting up python3-dbus (1.3.2-5build5) ... 175s Setting up initramfs-tools (0.146ubuntu1) ... 175s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 175s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 175s update-initramfs: deferring update (trigger activated) 175s Setting up linux-headers-virtual (6.14.0-7.7+1) ... 175s Setting up linux-generic (6.14.0-7.7+1) ... 175s Setting up ubuntu-minimal (1.549) ... 175s Setting up python3-apt (2.9.9build1) ... 175s Setting up python3-bcrypt (4.2.0-2.1build1) ... 176s Setting up python3-yaml (6.0.2-1build2) ... 176s Setting up libfwupd3:amd64 (2.0.6-4) ... 176s Setting up python3-lazr.uri (1.0.6-6) ... 176s Setting up binutils (2.44-3ubuntu1) ... 176s Setting up ubuntu-standard (1.549) ... 176s Setting up linux-virtual (6.14.0-7.7+1) ... 176s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 176s Setting up python3-gi (3.50.0-4build1) ... 176s Setting up linux-tools-6.14.0-7 (6.14.0-7.7) ... 176s Setting up linux-tools-6.14.0-7-generic (6.14.0-7.7) ... 176s Setting up fwupd (2.0.6-4) ... 177s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 177s fwupd.service is a disabled or a static unit not running, not starting it. 177s Processing triggers for man-db (2.13.0-1) ... 178s Processing triggers for dbus (1.16.2-1ubuntu1) ... 178s Processing triggers for shared-mime-info (2.4-5) ... 178s Warning: program compiled against libxml 212 using older 209 179s Processing triggers for libc-bin (2.41-1ubuntu1) ... 179s Processing triggers for linux-image-6.14.0-7-generic (6.14.0-7.7) ... 179s /etc/kernel/postinst.d/initramfs-tools: 179s update-initramfs: Generating /boot/initrd.img-6.14.0-7-generic 179s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 189s /etc/kernel/postinst.d/zz-update-grub: 189s Sourcing file `/etc/default/grub' 189s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 189s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 189s Generating grub configuration file ... 189s Found linux image: /boot/vmlinuz-6.14.0-7-generic 189s Found initrd image: /boot/initrd.img-6.14.0-7-generic 189s Found linux image: /boot/vmlinuz-6.12.0-16-generic 189s Found initrd image: /boot/initrd.img-6.12.0-16-generic 189s Found linux image: /boot/vmlinuz-6.11.0-8-generic 189s Found initrd image: /boot/initrd.img-6.11.0-8-generic 190s Warning: os-prober will not be executed to detect other bootable partitions. 190s Systems on them will not be added to the GRUB boot configuration. 190s Check GRUB_DISABLE_OS_PROBER documentation entry. 190s Adding boot menu entry for UEFI Firmware Settings ... 190s done 190s Processing triggers for initramfs-tools (0.146ubuntu1) ... 190s update-initramfs: Generating /boot/initrd.img-6.14.0-7-generic 190s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 201s Reading package lists... 201s Building dependency tree... 201s Reading state information... 201s Solving dependencies... 201s The following packages will be REMOVED: 201s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 201s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 201s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 201s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 202s 0 upgraded, 0 newly installed, 11 to remove and 0 not upgraded. 202s After this operation, 225 MB disk space will be freed. 202s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148650 files and directories currently installed.) 202s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 202s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 202s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 202s Removing libpython3.12t64:amd64 (3.12.9-1) ... 202s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 202s Removing libnsl2:amd64 (1.3.0-3build3) ... 202s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 202s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 203s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 204s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 205s /etc/kernel/postrm.d/initramfs-tools: 205s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 205s /etc/kernel/postrm.d/zz-update-grub: 205s Sourcing file `/etc/default/grub' 205s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 205s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 205s Generating grub configuration file ... 205s Found linux image: /boot/vmlinuz-6.14.0-7-generic 205s Found initrd image: /boot/initrd.img-6.14.0-7-generic 205s Found linux image: /boot/vmlinuz-6.12.0-16-generic 205s Found initrd image: /boot/initrd.img-6.12.0-16-generic 205s Warning: os-prober will not be executed to detect other bootable partitions. 205s Systems on them will not be added to the GRUB boot configuration. 205s Check GRUB_DISABLE_OS_PROBER documentation entry. 205s Adding boot menu entry for UEFI Firmware Settings ... 205s done 205s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 205s Processing triggers for libc-bin (2.41-1ubuntu1) ... 206s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 115819 files and directories currently installed.) 206s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 206s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 206s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 206s autopkgtest [10:47:15]: upgrading testbed (apt dist-upgrade and autopurge) 206s Reading package lists... 206s Building dependency tree... 206s Reading state information... 207s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 207s Starting 2 pkgProblemResolver with broken count: 0 207s Done 207s Entering ResolveByKeep 207s 207s Calculating upgrade... 208s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 208s Reading package lists... 208s Building dependency tree... 208s Reading state information... 208s Starting pkgProblemResolver with broken count: 0 208s Starting 2 pkgProblemResolver with broken count: 0 208s Done 209s Solving dependencies... 209s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 209s autopkgtest [10:47:18]: rebooting testbed after setup commands that affected boot 232s autopkgtest [10:47:41]: testbed running kernel: Linux 6.14.0-7-generic #7-Ubuntu SMP PREEMPT_DYNAMIC Fri Feb 28 12:14:20 UTC 2025 235s autopkgtest [10:47:44]: @@@@@@@@@@@@@@@@@@@@ apt-source unicycler 238s Get:1 http://ftpmaster.internal/ubuntu plucky/universe unicycler 0.5.1+dfsg-3 (dsc) [2389 B] 238s Get:2 http://ftpmaster.internal/ubuntu plucky/universe unicycler 0.5.1+dfsg-3 (tar) [14.8 MB] 238s Get:3 http://ftpmaster.internal/ubuntu plucky/universe unicycler 0.5.1+dfsg-3 (diff) [12.9 kB] 238s gpgv: Signature made Wed Feb 5 20:29:48 2025 UTC 238s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 238s gpgv: issuer "tchet@debian.org" 238s gpgv: Can't check signature: No public key 238s dpkg-source: warning: cannot verify inline signature for ./unicycler_0.5.1+dfsg-3.dsc: no acceptable signature found 239s autopkgtest [10:47:48]: testing package unicycler version 0.5.1+dfsg-3 239s autopkgtest [10:47:48]: build not needed 240s autopkgtest [10:47:49]: test run-unit-test: preparing testbed 241s Reading package lists... 241s Building dependency tree... 241s Reading state information... 241s Starting pkgProblemResolver with broken count: 0 241s Starting 2 pkgProblemResolver with broken count: 0 241s Done 242s The following NEW packages will be installed: 242s adwaita-icon-theme at-spi2-common autoconf automake autopoint autotools-dev 242s bamtools bcftools bowtie2 build-essential bwa ca-certificates-java cpp 242s cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu dconf-gsettings-backend 242s dconf-service debhelper debugedit default-jdk default-jdk-headless 242s default-jre default-jre-headless dh-autoreconf dh-python 242s dh-strip-nondeterminism dwz fontconfig fontconfig-config fonts-dejavu-core 242s fonts-dejavu-mono g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu 242s gcc gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext 242s gtk-update-icon-cache hicolor-icon-theme intltool-debian java-common 242s java-wrappers junit4 libapache-pom-java libarchive-zip-perl libasan8 242s libasound2-data libasound2t64 libatk-bridge2.0-0t64 libatk1.0-0t64 242s libatspi2.0-0t64 libavahi-client3 libavahi-common-data libavahi-common3 242s libbamtools2.5.2 libcairo-gobject2 libcairo2 libcc1-0 libcolord2 242s libcommons-beanutils-java libcommons-codec-java libcommons-collections3-java 242s libcommons-collections4-java libcommons-compress-java libcommons-io-java 242s libcommons-jexl2-java libcommons-lang-java libcommons-lang3-java 242s libcommons-logging-java libcommons-parent-java libcups2t64 libdatrie1 242s libdconf1 libdebhelper-perl libdeflate0 libdrm-intel1 libedlib1 libepoxy0 242s libezmorph-java libfile-stripnondeterminism-perl libfontconfig1 libgbm1 242s libgcc-14-dev libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgif7 libgl1 242s libgl1-mesa-dri libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 242s libgtk-3-0t64 libgtk-3-common libhamcrest-java libharfbuzz0b libhts3t64 242s libhtscodecs2 libhtsjdk-java libhwasan0 libisl23 libitm1 libjaxen-java 242s libjbig0 libjpeg-turbo8 libjpeg8 libjson-java libjsoncpp26 liblcms2-2 242s liblerc4 liblsan0 libmbedcrypto16 libmbedtls21 libmbedx509-7 libmpc3 242s libncbi-ngs3 libncbi-vdb3 libngs-java libngs-jni libnlopt0 libpango-1.0-0 242s libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcsclite1 242s libpixman-1-0 libquadmath0 librhino-java libseqan2-dev libsharpyuv0 242s libslf4j-java libsnappy-java libsnappy-jni libsnappy1v5 libspoa7.0.0 libssw0 242s libstdc++-14-dev libthai-data libthai0 libtiff6 libtool libtsan2 libubsan1 242s libvulkan1 libwayland-client0 libwayland-cursor0 libwayland-egl1 242s libwayland-server0 libwebp7 libx11-xcb1 libxcb-dri3-0 libxcb-glx0 242s libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 242s libxcb-xfixes0 libxcomposite1 libxcursor1 libxdamage1 libxerces2-java 242s libxfixes3 libxi6 libxinerama1 libxml-commons-external-java 242s libxml-commons-resolver1.1-java libxom-java libxrandr2 libxrender1 242s libxshmfence1 libxtst6 libxxf86vm1 m4 mesa-libgallium miniasm ncbi-blast+ 242s ncbi-data ncbi-vdb-data openjdk-21-jdk openjdk-21-jdk-headless 242s openjdk-21-jre openjdk-21-jre-headless pilon po-debconf python3-all 242s python3-joblib python3-packaging racon samtools scala-library spades 242s unicycler unicycler-data unzip x11-common zlib1g-dev 242s 0 upgraded, 202 newly installed, 0 to remove and 0 not upgraded. 242s Need to get 302 MB of archives. 242s After this operation, 858 MB of additional disk space will be used. 242s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libgdk-pixbuf2.0-common all 2.42.12+dfsg-2 [8004 B] 242s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 242s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 242s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 242s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 242s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 242s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 242s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 242s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 242s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.12+dfsg-2 [161 kB] 242s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 gtk-update-icon-cache amd64 4.17.5+ds-3ubuntu1 [54.0 kB] 242s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 hicolor-icon-theme all 0.18-2 [13.3 kB] 242s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 adwaita-icon-theme all 48~beta-3 [578 kB] 242s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 at-spi2-common all 2.55.90-1 [9072 B] 242s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 m4 amd64 1.4.19-7 [263 kB] 242s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 autoconf all 2.72-3ubuntu1 [383 kB] 242s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 autotools-dev all 20220109.1 [44.9 kB] 242s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 automake all 1:1.17-3ubuntu1 [572 kB] 242s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 autopoint all 0.23.1-1 [619 kB] 242s Get:20 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbamtools2.5.2 amd64 2.5.2+dfsg-6build1 [144 kB] 242s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libjsoncpp26 amd64 1.9.6-3 [90.0 kB] 242s Get:22 http://ftpmaster.internal/ubuntu plucky/universe amd64 bamtools amd64 2.5.2+dfsg-6build1 [178 kB] 242s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhtscodecs2 amd64 1.6.1-2 [132 kB] 242s Get:24 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhts3t64 amd64 1.21+ds-1 [514 kB] 242s Get:25 http://ftpmaster.internal/ubuntu plucky/universe amd64 bcftools amd64 1.21-1 [962 kB] 242s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 242s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 242s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 243s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 243s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 243s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 243s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 243s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 243s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 243s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 243s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 243s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 244s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 244s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 244s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 244s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 244s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 245s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 245s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 245s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 245s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 246s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 246s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 246s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 246s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 246s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 246s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 bwa amd64 0.7.18-1 [204 kB] 246s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 ca-certificates-java all 20240118 [11.6 kB] 246s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libdconf1 amd64 0.40.0-5 [39.8 kB] 246s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 dconf-service amd64 0.40.0-5 [28.4 kB] 246s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 dconf-gsettings-backend amd64 0.40.0-5 [22.7 kB] 246s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebhelper-perl all 13.24.1ubuntu2 [95.4 kB] 246s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libtool all 2.5.4-4 [168 kB] 246s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-autoreconf all 20 [16.1 kB] 246s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] 246s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [20.3 kB] 246s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-strip-nondeterminism all 1.14.1-2 [5064 B] 246s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 debugedit amd64 1:5.1-2 [47.0 kB] 246s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 dwz amd64 0.15-1build6 [115 kB] 246s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 gettext amd64 0.23.1-1 [1086 kB] 247s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 247s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] 247s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 debhelper all 13.24.1ubuntu2 [895 kB] 247s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 java-common all 0.76 [6852 B] 247s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 247s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcsclite1 amd64 2.3.1-1 [26.6 kB] 247s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 openjdk-21-jre-headless amd64 21.0.6+7-1 [46.4 MB] 249s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 default-jre-headless amd64 2:1.21-76 [3178 B] 249s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libatk1.0-0t64 amd64 2.55.90-1 [55.3 kB] 249s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 249s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libatspi2.0-0t64 amd64 2.55.90-1 [91.1 kB] 249s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libatk-bridge2.0-0t64 amd64 2.55.90-1 [69.0 kB] 249s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 249s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 249s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 249s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 249s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 249s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 249s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 249s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 249s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 249s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo-gobject2 amd64 1.18.2-2 [127 kB] 249s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libcolord2 amd64 1.4.7-3 [155 kB] 249s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-common-data amd64 0.8-16ubuntu1 [30.9 kB] 249s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-common3 amd64 0.8-16ubuntu1 [23.6 kB] 249s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-client3 amd64 0.8-16ubuntu1 [27.5 kB] 249s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libcups2t64 amd64 2.4.11-0ubuntu2 [292 kB] 249s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libepoxy0 amd64 1.5.10-2 [218 kB] 249s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 249s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 249s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 249s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 249s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 249s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 249s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.1-1 [255 kB] 249s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.1-1 [52.6 kB] 250s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.1-1 [29.1 kB] 250s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-client0 amd64 1.23.1-3 [29.7 kB] 250s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-cursor0 amd64 1.23.1-3 [10.9 kB] 250s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-egl1 amd64 1.23.1-3 [6168 B] 250s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcomposite1 amd64 1:0.4.6-1 [6642 B] 250s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libxfixes3 amd64 1:6.0.0-2build1 [10.8 kB] 250s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcursor1 amd64 1:1.2.3-1 [23.1 kB] 250s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libxdamage1 amd64 1:1.1.6-1build1 [6150 B] 250s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libxinerama1 amd64 2:1.1.4-3build1 [6396 B] 250s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrandr2 amd64 2:1.5.4-1 [19.6 kB] 250s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libgtk-3-common all 3.24.48-3ubuntu1 [1424 kB] 250s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libgtk-3-0t64 amd64 3.24.48-3ubuntu1 [3169 kB] 250s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB] 250s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [7944 B] 250s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [7508 B] 250s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-glx0 amd64 1.17.0-2 [24.8 kB] 250s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-present0 amd64 1.17.0-2 [6064 B] 250s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [10.2 kB] 250s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B] 250s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 250s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-intel1 amd64 2.4.123-1 [68.8 kB] 250s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-randr0 amd64 1.17.0-2 [17.9 kB] 250s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-sync1 amd64 1.17.0-2 [9312 B] 250s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libxshmfence1 amd64 1.3-1build5 [4764 B] 250s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 mesa-libgallium amd64 25.0.1-2ubuntu1 [12.1 MB] 251s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-server0 amd64 1.23.1-3 [37.2 kB] 251s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 libgbm1 amd64 25.0.1-2ubuntu1 [33.4 kB] 251s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 libvulkan1 amd64 1.4.304.0-1 [147 kB] 251s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1-mesa-dri amd64 25.0.1-2ubuntu1 [35.7 kB] 251s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx-mesa0 amd64 25.0.1-2ubuntu1 [146 kB] 251s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB] 251s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB] 251s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 libasound2-data all 1.2.13-1build1 [21.1 kB] 251s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 libasound2t64 amd64 1.2.13-1build1 [437 kB] 251s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 libgif7 amd64 5.2.2-1ubuntu2 [36.0 kB] 251s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 251s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 libxtst6 amd64 2:1.2.5-1 [13.0 kB] 251s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 openjdk-21-jre amd64 21.0.6+7-1 [219 kB] 251s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 default-jre amd64 2:1.21-76 [918 B] 251s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 openjdk-21-jdk-headless amd64 21.0.6+7-1 [82.8 MB] 254s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 default-jdk-headless amd64 2:1.21-76 [966 B] 254s Get:143 http://ftpmaster.internal/ubuntu plucky/main amd64 openjdk-21-jdk amd64 21.0.6+7-1 [3414 kB] 255s Get:144 http://ftpmaster.internal/ubuntu plucky/main amd64 default-jdk amd64 2:1.21-76 [922 B] 255s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 dh-python all 6.20250308 [118 kB] 255s Get:146 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 255s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 java-wrappers all 0.5 [9042 B] 255s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhamcrest-java all 2.2-2 [117 kB] 255s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 junit4 all 4.13.2-5 [348 kB] 255s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 libapache-pom-java all 33-2 [5874 B] 255s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-collections3-java all 3.2.2-3 [526 kB] 255s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-parent-java all 56-1 [10.7 kB] 255s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB] 255s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-beanutils-java all 1.9.4-2 [228 kB] 255s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-codec-java all 1.17.1-1 [302 kB] 255s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-collections4-java all 4.4-2 [670 kB] 255s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-io-java all 2.18.0-1 [477 kB] 255s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-compress-java all 1.27.1-2 [610 kB] 255s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-jexl2-java all 2.1.1-6 [250 kB] 255s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-lang-java all 2.6-10 [270 kB] 255s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-lang3-java all 3.17.0-1 [603 kB] 255s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 libedlib1 amd64 1.2.7-6build2 [18.7 kB] 255s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 libezmorph-java all 1.0.6-4 [76.0 kB] 255s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 libslf4j-java all 1.7.32-1 [141 kB] 255s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjaxen-java all 1.1.6-5 [213 kB] 255s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 libxml-commons-external-java all 1.4.01-6 [240 kB] 255s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 libxml-commons-resolver1.1-java all 1.2-11 [97.6 kB] 255s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 libxerces2-java all 2.12.2-1 [1430 kB] 255s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 libxom-java all 1.3.9-1 [174 kB] 255s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjson-java all 3.1.0+dfsg-2 [141 kB] 255s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmbedcrypto16 amd64 3.6.2-3ubuntu1 [276 kB] 255s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmbedx509-7 amd64 3.6.2-3ubuntu1 [37.1 kB] 255s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmbedtls21 amd64 3.6.2-3ubuntu1 [126 kB] 255s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 ncbi-vdb-data all 3.0.9+dfsg-2 [67.7 kB] 255s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 libncbi-vdb3 amd64 3.0.9+dfsg-2 [1409 kB] 255s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 libncbi-ngs3 amd64 3.0.9+dfsg-7.1ubuntu1 [165 kB] 255s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 libngs-jni amd64 3.0.9+dfsg-7.1ubuntu1 [4842 B] 255s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 libngs-java amd64 3.0.9+dfsg-7.1ubuntu1 [91.1 kB] 255s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 librhino-java all 1.7.15-1 [1354 kB] 255s Get:180 http://ftpmaster.internal/ubuntu plucky/main amd64 libsnappy1v5 amd64 1.2.1-1 [30.4 kB] 255s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsnappy-jni amd64 1.1.10.7-1 [6786 B] 255s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsnappy-java all 1.1.10.7-1 [83.6 kB] 255s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhtsjdk-java all 4.1.3+dfsg-2 [1829 kB] 255s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 libseqan2-dev all 2.4.0+dfsg-16 [1206 kB] 256s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 libspoa7.0.0 amd64 4.1.4-2 [79.1 kB] 256s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 libssw0 amd64 1.1-15 [22.5 kB] 256s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 miniasm amd64 0.3+dfsg-4 [30.3 kB] 256s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 ncbi-data all 6.1.20170106+dfsg2-5 [3966 kB] 256s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 ncbi-blast+ amd64 2.16.0+ds-6build1 [15.8 MB] 257s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 scala-library all 2.11.12-6 [9545 kB] 257s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 pilon all 1.24-4 [495 kB] 257s Get:192 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all amd64 3.13.2-2 [884 B] 257s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-joblib all 1.4.2-3 [205 kB] 257s Get:194 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.2-1 [51.5 kB] 257s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 racon amd64 1.5.0-3 [3113 kB] 257s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 samtools amd64 1.21-1 [655 kB] 257s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnlopt0 amd64 2.7.1-6ubuntu3 [251 kB] 257s Get:198 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 spades amd64 4.0.0+dfsg1-2 [8064 kB] 258s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 bowtie2 amd64 2.5.4-1 [1336 kB] 258s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicycler amd64 0.5.1+dfsg-3 [910 kB] 258s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicycler-data all 0.5.1+dfsg-3 [12.0 MB] 258s Get:202 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 259s Fetched 302 MB in 17s (17.8 MB/s) 259s Selecting previously unselected package libgdk-pixbuf2.0-common. 259s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 115816 files and directories currently installed.) 259s Preparing to unpack .../000-libgdk-pixbuf2.0-common_2.42.12+dfsg-2_all.deb ... 259s Unpacking libgdk-pixbuf2.0-common (2.42.12+dfsg-2) ... 259s Selecting previously unselected package libjpeg-turbo8:amd64. 259s Preparing to unpack .../001-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 259s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 259s Selecting previously unselected package libjpeg8:amd64. 259s Preparing to unpack .../002-libjpeg8_8c-2ubuntu11_amd64.deb ... 259s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 259s Selecting previously unselected package libdeflate0:amd64. 259s Preparing to unpack .../003-libdeflate0_1.23-1_amd64.deb ... 259s Unpacking libdeflate0:amd64 (1.23-1) ... 259s Selecting previously unselected package libjbig0:amd64. 259s Preparing to unpack .../004-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 259s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 259s Selecting previously unselected package liblerc4:amd64. 259s Preparing to unpack .../005-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 259s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 259s Selecting previously unselected package libsharpyuv0:amd64. 259s Preparing to unpack .../006-libsharpyuv0_1.5.0-0.1_amd64.deb ... 259s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 259s Selecting previously unselected package libwebp7:amd64. 259s Preparing to unpack .../007-libwebp7_1.5.0-0.1_amd64.deb ... 259s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 259s Selecting previously unselected package libtiff6:amd64. 259s Preparing to unpack .../008-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 259s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 259s Selecting previously unselected package libgdk-pixbuf-2.0-0:amd64. 259s Preparing to unpack .../009-libgdk-pixbuf-2.0-0_2.42.12+dfsg-2_amd64.deb ... 259s Unpacking libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-2) ... 259s Selecting previously unselected package gtk-update-icon-cache. 260s Preparing to unpack .../010-gtk-update-icon-cache_4.17.5+ds-3ubuntu1_amd64.deb ... 260s No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed. 260s No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed. 260s Unpacking gtk-update-icon-cache (4.17.5+ds-3ubuntu1) ... 260s Selecting previously unselected package hicolor-icon-theme. 260s Preparing to unpack .../011-hicolor-icon-theme_0.18-2_all.deb ... 260s Unpacking hicolor-icon-theme (0.18-2) ... 260s Selecting previously unselected package adwaita-icon-theme. 260s Preparing to unpack .../012-adwaita-icon-theme_48~beta-3_all.deb ... 260s Unpacking adwaita-icon-theme (48~beta-3) ... 260s Selecting previously unselected package at-spi2-common. 260s Preparing to unpack .../013-at-spi2-common_2.55.90-1_all.deb ... 260s Unpacking at-spi2-common (2.55.90-1) ... 260s Selecting previously unselected package m4. 260s Preparing to unpack .../014-m4_1.4.19-7_amd64.deb ... 260s Unpacking m4 (1.4.19-7) ... 260s Selecting previously unselected package autoconf. 260s Preparing to unpack .../015-autoconf_2.72-3ubuntu1_all.deb ... 260s Unpacking autoconf (2.72-3ubuntu1) ... 260s Selecting previously unselected package autotools-dev. 260s Preparing to unpack .../016-autotools-dev_20220109.1_all.deb ... 260s Unpacking autotools-dev (20220109.1) ... 260s Selecting previously unselected package automake. 260s Preparing to unpack .../017-automake_1%3a1.17-3ubuntu1_all.deb ... 260s Unpacking automake (1:1.17-3ubuntu1) ... 260s Selecting previously unselected package autopoint. 260s Preparing to unpack .../018-autopoint_0.23.1-1_all.deb ... 260s Unpacking autopoint (0.23.1-1) ... 260s Selecting previously unselected package libbamtools2.5.2:amd64. 260s Preparing to unpack .../019-libbamtools2.5.2_2.5.2+dfsg-6build1_amd64.deb ... 260s Unpacking libbamtools2.5.2:amd64 (2.5.2+dfsg-6build1) ... 260s Selecting previously unselected package libjsoncpp26:amd64. 260s Preparing to unpack .../020-libjsoncpp26_1.9.6-3_amd64.deb ... 260s Unpacking libjsoncpp26:amd64 (1.9.6-3) ... 260s Selecting previously unselected package bamtools. 260s Preparing to unpack .../021-bamtools_2.5.2+dfsg-6build1_amd64.deb ... 260s Unpacking bamtools (2.5.2+dfsg-6build1) ... 260s Selecting previously unselected package libhtscodecs2:amd64. 260s Preparing to unpack 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unpack .../043-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 262s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 262s Selecting previously unselected package gcc. 262s Preparing to unpack .../044-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 262s Unpacking gcc (4:14.2.0-1ubuntu1) ... 262s Selecting previously unselected package libstdc++-14-dev:amd64. 262s Preparing to unpack .../045-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ... 262s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 262s Selecting previously unselected package g++-14-x86-64-linux-gnu. 262s Preparing to unpack .../046-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 262s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 262s Selecting previously unselected package g++-14. 262s Preparing to unpack .../047-g++-14_14.2.0-17ubuntu3_amd64.deb ... 262s Unpacking g++-14 (14.2.0-17ubuntu3) ... 262s Selecting previously unselected package g++-x86-64-linux-gnu. 262s Preparing to unpack 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previously unselected package dconf-service. 262s Preparing to unpack .../054-dconf-service_0.40.0-5_amd64.deb ... 262s Unpacking dconf-service (0.40.0-5) ... 262s Selecting previously unselected package dconf-gsettings-backend:amd64. 262s Preparing to unpack .../055-dconf-gsettings-backend_0.40.0-5_amd64.deb ... 262s Unpacking dconf-gsettings-backend:amd64 (0.40.0-5) ... 262s Selecting previously unselected package libdebhelper-perl. 262s Preparing to unpack .../056-libdebhelper-perl_13.24.1ubuntu2_all.deb ... 262s Unpacking libdebhelper-perl (13.24.1ubuntu2) ... 262s Selecting previously unselected package libtool. 262s Preparing to unpack .../057-libtool_2.5.4-4_all.deb ... 262s Unpacking libtool (2.5.4-4) ... 262s Selecting previously unselected package dh-autoreconf. 262s Preparing to unpack .../058-dh-autoreconf_20_all.deb ... 262s Unpacking dh-autoreconf (20) ... 262s Selecting previously unselected package libarchive-zip-perl. 262s Preparing to unpack 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libxfixes3:amd64 (1:6.0.0-2build1) ... 265s Selecting previously unselected package libxcursor1:amd64. 265s Preparing to unpack .../107-libxcursor1_1%3a1.2.3-1_amd64.deb ... 265s Unpacking libxcursor1:amd64 (1:1.2.3-1) ... 265s Selecting previously unselected package libxdamage1:amd64. 265s Preparing to unpack .../108-libxdamage1_1%3a1.1.6-1build1_amd64.deb ... 265s Unpacking libxdamage1:amd64 (1:1.1.6-1build1) ... 265s Selecting previously unselected package libxinerama1:amd64. 265s Preparing to unpack .../109-libxinerama1_2%3a1.1.4-3build1_amd64.deb ... 265s Unpacking libxinerama1:amd64 (2:1.1.4-3build1) ... 265s Selecting previously unselected package libxrandr2:amd64. 265s Preparing to unpack .../110-libxrandr2_2%3a1.5.4-1_amd64.deb ... 265s Unpacking libxrandr2:amd64 (2:1.5.4-1) ... 265s Selecting previously unselected package libgtk-3-common. 265s Preparing to unpack .../111-libgtk-3-common_3.24.48-3ubuntu1_all.deb ... 265s Unpacking libgtk-3-common (3.24.48-3ubuntu1) ... 265s Selecting previously unselected package libgtk-3-0t64:amd64. 265s Preparing to unpack .../112-libgtk-3-0t64_3.24.48-3ubuntu1_amd64.deb ... 265s Unpacking libgtk-3-0t64:amd64 (3.24.48-3ubuntu1) ... 266s Selecting previously unselected package libglvnd0:amd64. 266s Preparing to unpack .../113-libglvnd0_1.7.0-1build1_amd64.deb ... 266s Unpacking libglvnd0:amd64 (1.7.0-1build1) ... 266s Selecting previously unselected package libx11-xcb1:amd64. 266s Preparing to unpack .../114-libx11-xcb1_2%3a1.8.10-2_amd64.deb ... 266s Unpacking libx11-xcb1:amd64 (2:1.8.10-2) ... 266s Selecting previously unselected package libxcb-dri3-0:amd64. 266s Preparing to unpack .../115-libxcb-dri3-0_1.17.0-2_amd64.deb ... 266s Unpacking libxcb-dri3-0:amd64 (1.17.0-2) ... 266s Selecting previously unselected package libxcb-glx0:amd64. 266s Preparing to unpack .../116-libxcb-glx0_1.17.0-2_amd64.deb ... 266s Unpacking libxcb-glx0:amd64 (1.17.0-2) ... 266s Selecting previously unselected package libxcb-present0:amd64. 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.../122-libxcb-randr0_1.17.0-2_amd64.deb ... 266s Unpacking libxcb-randr0:amd64 (1.17.0-2) ... 266s Selecting previously unselected package libxcb-sync1:amd64. 266s Preparing to unpack .../123-libxcb-sync1_1.17.0-2_amd64.deb ... 266s Unpacking libxcb-sync1:amd64 (1.17.0-2) ... 266s Selecting previously unselected package libxshmfence1:amd64. 266s Preparing to unpack .../124-libxshmfence1_1.3-1build5_amd64.deb ... 266s Unpacking libxshmfence1:amd64 (1.3-1build5) ... 266s Selecting previously unselected package mesa-libgallium:amd64. 266s Preparing to unpack .../125-mesa-libgallium_25.0.1-2ubuntu1_amd64.deb ... 266s Unpacking mesa-libgallium:amd64 (25.0.1-2ubuntu1) ... 266s Selecting previously unselected package libwayland-server0:amd64. 266s Preparing to unpack .../126-libwayland-server0_1.23.1-3_amd64.deb ... 266s Unpacking libwayland-server0:amd64 (1.23.1-3) ... 266s Selecting previously unselected package libgbm1:amd64. 266s Preparing to unpack .../127-libgbm1_25.0.1-2ubuntu1_amd64.deb ... 266s Unpacking libgbm1:amd64 (25.0.1-2ubuntu1) ... 266s Selecting previously unselected package libvulkan1:amd64. 266s Preparing to unpack .../128-libvulkan1_1.4.304.0-1_amd64.deb ... 266s Unpacking libvulkan1:amd64 (1.4.304.0-1) ... 266s Selecting previously unselected package libgl1-mesa-dri:amd64. 266s Preparing to unpack .../129-libgl1-mesa-dri_25.0.1-2ubuntu1_amd64.deb ... 266s Unpacking libgl1-mesa-dri:amd64 (25.0.1-2ubuntu1) ... 266s Selecting previously unselected package libglx-mesa0:amd64. 266s Preparing to unpack .../130-libglx-mesa0_25.0.1-2ubuntu1_amd64.deb ... 266s Unpacking libglx-mesa0:amd64 (25.0.1-2ubuntu1) ... 266s Selecting previously unselected package libglx0:amd64. 266s Preparing to unpack .../131-libglx0_1.7.0-1build1_amd64.deb ... 266s Unpacking libglx0:amd64 (1.7.0-1build1) ... 266s Selecting previously unselected package libgl1:amd64. 266s Preparing to unpack .../132-libgl1_1.7.0-1build1_amd64.deb ... 266s Unpacking libgl1:amd64 (1.7.0-1build1) ... 266s Selecting previously unselected package libasound2-data. 266s Preparing to unpack .../133-libasound2-data_1.2.13-1build1_all.deb ... 266s Unpacking libasound2-data (1.2.13-1build1) ... 266s Selecting previously unselected package libasound2t64:amd64. 266s Preparing to unpack .../134-libasound2t64_1.2.13-1build1_amd64.deb ... 266s Unpacking libasound2t64:amd64 (1.2.13-1build1) ... 267s Selecting previously unselected package libgif7:amd64. 267s Preparing to unpack .../135-libgif7_5.2.2-1ubuntu2_amd64.deb ... 267s Unpacking libgif7:amd64 (5.2.2-1ubuntu2) ... 267s Selecting previously unselected package x11-common. 267s Preparing to unpack .../136-x11-common_1%3a7.7+23ubuntu3_all.deb ... 267s Unpacking x11-common (1:7.7+23ubuntu3) ... 267s Selecting previously unselected package libxtst6:amd64. 267s Preparing to unpack .../137-libxtst6_2%3a1.2.5-1_amd64.deb ... 267s Unpacking libxtst6:amd64 (2:1.2.5-1) ... 267s Selecting previously unselected package openjdk-21-jre:amd64. 267s Preparing to unpack .../138-openjdk-21-jre_21.0.6+7-1_amd64.deb ... 267s Unpacking openjdk-21-jre:amd64 (21.0.6+7-1) ... 267s Selecting previously unselected package default-jre. 267s Preparing to unpack .../139-default-jre_2%3a1.21-76_amd64.deb ... 267s Unpacking default-jre (2:1.21-76) ... 267s Selecting previously unselected package openjdk-21-jdk-headless:amd64. 267s Preparing to unpack .../140-openjdk-21-jdk-headless_21.0.6+7-1_amd64.deb ... 267s Unpacking openjdk-21-jdk-headless:amd64 (21.0.6+7-1) ... 267s Selecting previously unselected package default-jdk-headless. 267s Preparing to unpack .../141-default-jdk-headless_2%3a1.21-76_amd64.deb ... 267s Unpacking default-jdk-headless (2:1.21-76) ... 267s Selecting previously unselected package openjdk-21-jdk:amd64. 267s Preparing to unpack .../142-openjdk-21-jdk_21.0.6+7-1_amd64.deb ... 267s Unpacking openjdk-21-jdk:amd64 (21.0.6+7-1) ... 267s Selecting previously unselected package default-jdk. 267s Preparing to unpack .../143-default-jdk_2%3a1.21-76_amd64.deb ... 267s Unpacking default-jdk (2:1.21-76) ... 267s Selecting previously unselected package dh-python. 267s Preparing to unpack .../144-dh-python_6.20250308_all.deb ... 267s Unpacking dh-python (6.20250308) ... 267s Selecting previously unselected package unzip. 267s Preparing to unpack .../145-unzip_6.0-28ubuntu6_amd64.deb ... 267s Unpacking unzip (6.0-28ubuntu6) ... 267s Selecting previously unselected package java-wrappers. 267s Preparing to unpack .../146-java-wrappers_0.5_all.deb ... 267s Unpacking java-wrappers (0.5) ... 267s Selecting previously unselected package libhamcrest-java. 267s Preparing to unpack .../147-libhamcrest-java_2.2-2_all.deb ... 267s Unpacking libhamcrest-java (2.2-2) ... 267s Selecting previously unselected package junit4. 267s Preparing to unpack .../148-junit4_4.13.2-5_all.deb ... 267s Unpacking junit4 (4.13.2-5) ... 267s Selecting previously unselected package libapache-pom-java. 267s Preparing to unpack .../149-libapache-pom-java_33-2_all.deb ... 267s Unpacking libapache-pom-java (33-2) ... 267s Selecting previously unselected package libcommons-collections3-java. 267s Preparing to unpack .../150-libcommons-collections3-java_3.2.2-3_all.deb ... 267s Unpacking libcommons-collections3-java (3.2.2-3) ... 267s Selecting previously unselected package libcommons-parent-java. 267s Preparing to unpack .../151-libcommons-parent-java_56-1_all.deb ... 267s Unpacking libcommons-parent-java (56-1) ... 268s Selecting previously unselected package libcommons-logging-java. 268s Preparing to unpack .../152-libcommons-logging-java_1.3.0-1ubuntu1_all.deb ... 268s Unpacking libcommons-logging-java (1.3.0-1ubuntu1) ... 268s Selecting previously unselected package libcommons-beanutils-java. 268s Preparing to unpack .../153-libcommons-beanutils-java_1.9.4-2_all.deb ... 268s Unpacking libcommons-beanutils-java (1.9.4-2) ... 268s Selecting previously unselected package libcommons-codec-java. 268s Preparing to unpack .../154-libcommons-codec-java_1.17.1-1_all.deb ... 268s Unpacking libcommons-codec-java (1.17.1-1) ... 268s Selecting previously unselected package libcommons-collections4-java. 268s Preparing to unpack .../155-libcommons-collections4-java_4.4-2_all.deb ... 268s Unpacking libcommons-collections4-java (4.4-2) ... 268s Selecting previously unselected package libcommons-io-java. 268s Preparing to unpack .../156-libcommons-io-java_2.18.0-1_all.deb ... 268s Unpacking libcommons-io-java (2.18.0-1) ... 268s Selecting previously unselected package libcommons-compress-java. 268s Preparing to unpack .../157-libcommons-compress-java_1.27.1-2_all.deb ... 268s Unpacking libcommons-compress-java (1.27.1-2) ... 268s Selecting previously unselected package libcommons-jexl2-java. 268s Preparing to unpack .../158-libcommons-jexl2-java_2.1.1-6_all.deb ... 268s Unpacking libcommons-jexl2-java (2.1.1-6) ... 268s Selecting previously unselected package libcommons-lang-java. 268s Preparing to unpack .../159-libcommons-lang-java_2.6-10_all.deb ... 268s Unpacking libcommons-lang-java (2.6-10) ... 268s Selecting previously unselected package libcommons-lang3-java. 268s Preparing to unpack .../160-libcommons-lang3-java_3.17.0-1_all.deb ... 268s Unpacking libcommons-lang3-java (3.17.0-1) ... 268s Selecting previously unselected package libedlib1:amd64. 268s Preparing to unpack .../161-libedlib1_1.2.7-6build2_amd64.deb ... 268s Unpacking libedlib1:amd64 (1.2.7-6build2) ... 268s Selecting previously unselected package libezmorph-java. 268s Preparing to unpack .../162-libezmorph-java_1.0.6-4_all.deb ... 268s Unpacking libezmorph-java (1.0.6-4) ... 268s Selecting previously unselected package libslf4j-java. 268s Preparing to unpack .../163-libslf4j-java_1.7.32-1_all.deb ... 268s Unpacking libslf4j-java (1.7.32-1) ... 268s Selecting previously unselected package libjaxen-java. 268s Preparing to unpack .../164-libjaxen-java_1.1.6-5_all.deb ... 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268s Selecting previously unselected package libmbedcrypto16:amd64. 268s Preparing to unpack .../170-libmbedcrypto16_3.6.2-3ubuntu1_amd64.deb ... 268s Unpacking libmbedcrypto16:amd64 (3.6.2-3ubuntu1) ... 268s Selecting previously unselected package libmbedx509-7:amd64. 268s Preparing to unpack .../171-libmbedx509-7_3.6.2-3ubuntu1_amd64.deb ... 268s Unpacking libmbedx509-7:amd64 (3.6.2-3ubuntu1) ... 268s Selecting previously unselected package libmbedtls21:amd64. 268s Preparing to unpack .../172-libmbedtls21_3.6.2-3ubuntu1_amd64.deb ... 268s Unpacking libmbedtls21:amd64 (3.6.2-3ubuntu1) ... 268s Selecting previously unselected package ncbi-vdb-data. 268s Preparing to unpack .../173-ncbi-vdb-data_3.0.9+dfsg-2_all.deb ... 268s Unpacking ncbi-vdb-data (3.0.9+dfsg-2) ... 268s Selecting previously unselected package libncbi-vdb3:amd64. 268s Preparing to unpack .../174-libncbi-vdb3_3.0.9+dfsg-2_amd64.deb ... 268s Unpacking libncbi-vdb3:amd64 (3.0.9+dfsg-2) ... 268s Selecting previously unselected package libncbi-ngs3:amd64. 268s Preparing to unpack .../175-libncbi-ngs3_3.0.9+dfsg-7.1ubuntu1_amd64.deb ... 268s Unpacking libncbi-ngs3:amd64 (3.0.9+dfsg-7.1ubuntu1) ... 268s Selecting previously unselected package libngs-jni:amd64. 268s Preparing to unpack .../176-libngs-jni_3.0.9+dfsg-7.1ubuntu1_amd64.deb ... 268s Unpacking libngs-jni:amd64 (3.0.9+dfsg-7.1ubuntu1) ... 268s Selecting previously unselected package libngs-java:amd64. 268s Preparing to unpack .../177-libngs-java_3.0.9+dfsg-7.1ubuntu1_amd64.deb ... 268s Unpacking libngs-java:amd64 (3.0.9+dfsg-7.1ubuntu1) ... 268s Selecting previously unselected package librhino-java. 268s Preparing to unpack .../178-librhino-java_1.7.15-1_all.deb ... 268s Unpacking librhino-java (1.7.15-1) ... 268s Selecting previously unselected package libsnappy1v5:amd64. 268s Preparing to unpack .../179-libsnappy1v5_1.2.1-1_amd64.deb ... 268s Unpacking libsnappy1v5:amd64 (1.2.1-1) ... 268s Selecting previously unselected package libsnappy-jni. 268s Preparing to unpack .../180-libsnappy-jni_1.1.10.7-1_amd64.deb ... 268s Unpacking libsnappy-jni (1.1.10.7-1) ... 269s Selecting previously unselected package libsnappy-java. 269s Preparing to unpack .../181-libsnappy-java_1.1.10.7-1_all.deb ... 269s Unpacking libsnappy-java (1.1.10.7-1) ... 269s Selecting previously unselected package libhtsjdk-java. 269s Preparing to unpack .../182-libhtsjdk-java_4.1.3+dfsg-2_all.deb ... 269s Unpacking libhtsjdk-java (4.1.3+dfsg-2) ... 269s Selecting previously unselected package libseqan2-dev. 269s Preparing to unpack .../183-libseqan2-dev_2.4.0+dfsg-16_all.deb ... 269s Unpacking libseqan2-dev (2.4.0+dfsg-16) ... 269s Selecting previously unselected package libspoa7.0.0:amd64. 269s Preparing to unpack .../184-libspoa7.0.0_4.1.4-2_amd64.deb ... 269s Unpacking libspoa7.0.0:amd64 (4.1.4-2) ... 269s Selecting previously unselected package libssw0:amd64. 269s Preparing to unpack .../185-libssw0_1.1-15_amd64.deb ... 269s Unpacking libssw0:amd64 (1.1-15) ... 269s Selecting previously unselected package miniasm. 269s Preparing to unpack .../186-miniasm_0.3+dfsg-4_amd64.deb ... 269s Unpacking miniasm (0.3+dfsg-4) ... 269s Selecting previously unselected package ncbi-data. 269s Preparing to unpack .../187-ncbi-data_6.1.20170106+dfsg2-5_all.deb ... 269s Unpacking ncbi-data (6.1.20170106+dfsg2-5) ... 269s Selecting previously unselected package ncbi-blast+. 269s Preparing to unpack .../188-ncbi-blast+_2.16.0+ds-6build1_amd64.deb ... 269s Unpacking ncbi-blast+ (2.16.0+ds-6build1) ... 269s Selecting previously unselected package scala-library. 269s Preparing to unpack .../189-scala-library_2.11.12-6_all.deb ... 269s Unpacking scala-library (2.11.12-6) ... 269s Selecting previously unselected package pilon. 269s Preparing to unpack .../190-pilon_1.24-4_all.deb ... 269s Unpacking pilon (1.24-4) ... 269s Selecting previously unselected package python3-all. 269s Preparing to unpack .../191-python3-all_3.13.2-2_amd64.deb ... 269s Unpacking python3-all (3.13.2-2) ... 269s Selecting previously unselected package python3-joblib. 269s Preparing to unpack .../192-python3-joblib_1.4.2-3_all.deb ... 269s Unpacking python3-joblib (1.4.2-3) ... 270s Selecting previously unselected package python3-packaging. 270s Preparing to unpack .../193-python3-packaging_24.2-1_all.deb ... 270s Unpacking python3-packaging (24.2-1) ... 270s Selecting previously unselected package racon. 270s Preparing to unpack .../194-racon_1.5.0-3_amd64.deb ... 270s Unpacking racon (1.5.0-3) ... 270s Selecting previously unselected package samtools. 270s Preparing to unpack .../195-samtools_1.21-1_amd64.deb ... 270s Unpacking samtools (1.21-1) ... 270s Selecting previously unselected package libnlopt0:amd64. 270s Preparing to unpack .../196-libnlopt0_2.7.1-6ubuntu3_amd64.deb ... 270s Unpacking libnlopt0:amd64 (2.7.1-6ubuntu3) ... 270s Selecting previously unselected package spades. 270s Preparing to unpack .../197-spades_4.0.0+dfsg1-2_amd64.deb 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liblcms2-2:amd64 (2.16-2) ... 270s Setting up ncbi-data (6.1.20170106+dfsg2-5) ... 270s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 270s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 270s Setting up libwayland-server0:amd64 (1.23.1-3) ... 270s Setting up libx11-xcb1:amd64 (2:1.8.10-2) ... 270s Setting up libpciaccess0:amd64 (0.17-3build1) ... 270s Setting up libslf4j-java (1.7.32-1) ... 270s Setting up libxdamage1:amd64 (1:1.1.6-1build1) ... 270s Setting up libxcb-xfixes0:amd64 (1.17.0-2) ... 270s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 270s Setting up hicolor-icon-theme (0.18-2) ... 270s Setting up libxi6:amd64 (2:1.8.2-1) ... 270s Setting up java-common (0.76) ... 270s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 270s Setting up libdatrie1:amd64 (0.2.13-3build1) ... 270s Setting up python3-joblib (1.4.2-3) ... 271s Setting up miniasm (0.3+dfsg-4) ... 271s Setting up libxcb-render0:amd64 (1.17.0-2) ... 271s Setting up libarchive-zip-perl (1.68-1) ... 271s Setting up bwa (0.7.18-1) ... 271s Setting up libglvnd0:amd64 (1.7.0-1build1) ... 271s Setting up unicycler-data (0.5.1+dfsg-3) ... 271s Setting up libxcb-glx0:amd64 (1.17.0-2) ... 271s Setting up unzip (6.0-28ubuntu6) ... 271s Setting up libdebhelper-perl (13.24.1ubuntu2) ... 271s Setting up libdrm-intel1:amd64 (2.4.123-1) ... 271s Setting up libgdk-pixbuf2.0-common (2.42.12+dfsg-2) ... 271s Setting up x11-common (1:7.7+23ubuntu3) ... 271s Setting up libdeflate0:amd64 (1.23-1) ... 271s Setting up m4 (1.4.19-7) ... 271s Setting up scala-library (2.11.12-6) ... 271s Setting up python3-all (3.13.2-2) ... 271s Setting up libnlopt0:amd64 (2.7.1-6ubuntu3) ... 271s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 271s Setting up libgomp1:amd64 (15-20250222-0ubuntu1) ... 271s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 271s Setting up libcolord2:amd64 (1.4.7-3) ... 271s Setting up libxxf86vm1:amd64 (1:1.1.4-1build4) ... 271s Setting up libsnappy1v5:amd64 (1.2.1-1) ... 271s Setting up bowtie2 (2.5.4-1) ... 271s Setting up libseqan2-dev (2.4.0+dfsg-16) ... 271s Setting up libxcb-present0:amd64 (1.17.0-2) ... 271s Setting up libdconf1:amd64 (0.40.0-5) ... 271s Setting up libcommons-collections3-java (3.2.2-3) ... 271s Setting up libasound2-data (1.2.13-1build1) ... 271s Setting up librhino-java (1.7.15-1) ... 271s Setting up autotools-dev (20220109.1) ... 271s Setting up python3-packaging (24.2-1) ... 271s Setting up libasound2t64:amd64 (1.2.13-1build1) ... 271s Setting up libjaxen-java (1.1.6-5) ... 271s Setting up libepoxy0:amd64 (1.5.10-2) ... 271s Setting up libxfixes3:amd64 (1:6.0.0-2build1) ... 271s Setting up libxcb-sync1:amd64 (1.17.0-2) ... 271s Setting up libjsoncpp26:amd64 (1.9.6-3) ... 271s Setting up libapache-pom-java (33-2) ... 271s Setting up libavahi-common-data:amd64 (0.8-16ubuntu1) ... 271s Setting up libatspi2.0-0t64:amd64 (2.55.90-1) ... 271s Setting up libquadmath0:amd64 (15-20250222-0ubuntu1) ... 271s Setting up libxinerama1:amd64 (2:1.1.4-3build1) ... 271s Setting up fonts-dejavu-mono (2.37-8) ... 271s Setting up libspoa7.0.0:amd64 (4.1.4-2) ... 271s Setting up libxml-commons-resolver1.1-java (1.2-11) ... 271s Setting up libmpc3:amd64 (1.3.1-1build2) ... 271s Setting up libxrandr2:amd64 (2:1.5.4-1) ... 271s Setting up autopoint (0.23.1-1) ... 271s Setting up fonts-dejavu-core (2.37-8) ... 271s Setting up libpcsclite1:amd64 (2.3.1-1) ... 271s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 271s Setting up libbamtools2.5.2:amd64 (2.5.2+dfsg-6build1) ... 271s Setting up libhamcrest-java (2.2-2) ... 271s Setting up libvulkan1:amd64 (1.4.304.0-1) ... 271s Setting up autoconf (2.72-3ubuntu1) ... 271s Setting up libwebp7:amd64 (1.5.0-0.1) ... 271s Setting up libubsan1:amd64 (15-20250222-0ubuntu1) ... 271s Setting up libgif7:amd64 (5.2.2-1ubuntu2) ... 271s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 271s Setting up libedlib1:amd64 (1.2.7-6build2) ... 271s Setting up dwz (0.15-1build6) ... 271s Setting up libxshmfence1:amd64 (1.3-1build5) ... 271s Setting up libhwasan0:amd64 (15-20250222-0ubuntu1) ... 271s Setting up at-spi2-common (2.55.90-1) ... 271s Setting up bamtools (2.5.2+dfsg-6build1) ... 271s Setting up libxcb-randr0:amd64 (1.17.0-2) ... 271s Setting up libasan8:amd64 (15-20250222-0ubuntu1) ... 271s Setting up libxml-commons-external-java (1.4.01-6) ... 271s Setting up debugedit (1:5.1-2) ... 271s Setting up libhts3t64:amd64 (1.21+ds-1) ... 271s Setting up libharfbuzz0b:amd64 (10.2.0-1) ... 271s Setting up ncbi-vdb-data (3.0.9+dfsg-2) ... 271s Setting up libthai-data (0.1.29-2build1) ... 271s Setting up libwayland-egl1:amd64 (1.23.1-3) ... 271s Setting up libmbedcrypto16:amd64 (3.6.2-3ubuntu1) ... 271s Setting up libtsan2:amd64 (15-20250222-0ubuntu1) ... 271s Setting up ca-certificates-java (20240118) ... 271s No JRE found. Skipping Java certificates setup. 271s Setting up libxerces2-java (2.12.2-1) ... 271s Setting up libisl23:amd64 (0.27-1) ... 271s Setting up libsnappy-jni (1.1.10.7-1) ... 271s Setting up libezmorph-java (1.0.6-4) ... 271s Setting up libxcomposite1:amd64 (1:0.4.6-1) ... 271s Setting up libssw0:amd64 (1.1-15) ... 271s Setting up libcc1-0:amd64 (15-20250222-0ubuntu1) ... 271s Setting up liblsan0:amd64 (15-20250222-0ubuntu1) ... 271s Setting up libitm1:amd64 (15-20250222-0ubuntu1) ... 271s Setting up libwayland-client0:amd64 (1.23.1-3) ... 271s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 271s Setting up automake (1:1.17-3ubuntu1) ... 271s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode 271s Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... 271s Setting up mesa-libgallium:amd64 (25.0.1-2ubuntu1) ... 271s Setting up gettext (0.23.1-1) ... 271s Setting up java-wrappers (0.5) ... 271s Setting up libatk1.0-0t64:amd64 (2.55.90-1) ... 271s Setting up openjdk-21-jre-headless:amd64 (21.0.6+7-1) ... 271s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode 271s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 271s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 271s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 271s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 271s Setting up libgbm1:amd64 (25.0.1-2ubuntu1) ... 271s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 271s Setting up libxtst6:amd64 (2:1.2.5-1) ... 271s Setting up libxcursor1:amd64 (1:1.2.3-1) ... 271s Setting up libgl1-mesa-dri:amd64 (25.0.1-2ubuntu1) ... 271s Setting up bcftools (1.21-1) ... 271s Setting up libcommons-parent-java (56-1) ... 271s Setting up libavahi-common3:amd64 (0.8-16ubuntu1) ... 271s Setting up libcommons-logging-java (1.3.0-1ubuntu1) ... 271s Setting up dconf-service (0.40.0-5) ... 271s Setting up libxom-java (1.3.9-1) ... 271s Setting up libcommons-lang-java (2.6-10) ... 271s Setting up samtools (1.21-1) ... 271s Setting up intltool-debian (0.35.0+20060710.6) ... 271s Setting up libcommons-jexl2-java (2.1.1-6) ... 271s Setting up libthai0:amd64 (0.1.29-2build1) ... 271s Setting up libmbedx509-7:amd64 (3.6.2-3ubuntu1) ... 271s Setting up racon (1.5.0-3) ... 271s Setting up libcommons-collections4-java (4.4-2) ... 271s Setting up cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 271s Setting up libcommons-lang3-java (3.17.0-1) ... 271s Setting up cpp-14 (14.2.0-17ubuntu3) ... 271s Setting up libmbedtls21:amd64 (3.6.2-3ubuntu1) ... 271s Setting up dh-strip-nondeterminism (1.14.1-2) ... 271s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 271s Setting up libwayland-cursor0:amd64 (1.23.1-3) ... 271s Setting up libcommons-beanutils-java (1.9.4-2) ... 271s Setting up spades (4.0.0+dfsg1-2) ... 272s Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-2) ... 272s Setting up libsnappy-java (1.1.10.7-1) ... 272s Setting up libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 272s Setting up libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 272s Setting up libcommons-codec-java (1.17.1-1) ... 272s Setting up libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 272s Setting up libavahi-client3:amd64 (0.8-16ubuntu1) ... 272s Setting up cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 272s Setting up libatk-bridge2.0-0t64:amd64 (2.55.90-1) ... 272s Setting up gtk-update-icon-cache (4.17.5+ds-3ubuntu1) ... 272s Setting up fontconfig (2.15.0-2ubuntu1) ... 274s Regenerating fonts cache... done. 274s Setting up libglx-mesa0:amd64 (25.0.1-2ubuntu1) ... 274s Setting up libglx0:amd64 (1.7.0-1build1) ... 274s Setting up dconf-gsettings-backend:amd64 (0.40.0-5) ... 274s Setting up libcommons-io-java (2.18.0-1) ... 274s Setting up po-debconf (1.0.21+nmu1) ... 274s Setting up libpango-1.0-0:amd64 (1.56.1-1) ... 274s Setting up libncbi-vdb3:amd64 (3.0.9+dfsg-2) ... 274s Setting up libcairo2:amd64 (1.18.2-2) ... 274s Setting up ncbi-blast+ (2.16.0+ds-6build1) ... 274s Setting up libgl1:amd64 (1.7.0-1build1) ... 274s Setting up adwaita-icon-theme (48~beta-3) ... 274s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 274s Setting up cpp (4:14.2.0-1ubuntu1) ... 274s Setting up libcairo-gobject2:amd64 (1.18.2-2) ... 274s Setting up gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 274s Setting up libpangoft2-1.0-0:amd64 (1.56.1-1) ... 274s Setting up libcups2t64:amd64 (2.4.11-0ubuntu2) ... 274s Setting up libgtk-3-common (3.24.48-3ubuntu1) ... 274s Setting up libpangocairo-1.0-0:amd64 (1.56.1-1) ... 274s Setting up libncbi-ngs3:amd64 (3.0.9+dfsg-7.1ubuntu1) ... 274s Setting up libngs-jni:amd64 (3.0.9+dfsg-7.1ubuntu1) ... 274s Setting up gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 274s Setting up libcommons-compress-java (1.27.1-2) ... 274s Setting up gcc-14 (14.2.0-17ubuntu3) ... 274s Setting up g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 274s Setting up g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 274s Setting up g++-14 (14.2.0-17ubuntu3) ... 274s Setting up libngs-java:amd64 (3.0.9+dfsg-7.1ubuntu1) ... 274s Setting up libtool (2.5.4-4) ... 274s Setting up gcc (4:14.2.0-1ubuntu1) ... 274s Setting up dh-autoreconf (20) ... 274s Setting up g++ (4:14.2.0-1ubuntu1) ... 274s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 274s Setting up build-essential (12.10ubuntu1) ... 274s Setting up debhelper (13.24.1ubuntu2) ... 274s Processing triggers for man-db (2.13.0-1) ... 275s Processing triggers for libglib2.0-0t64:amd64 (2.84.0-1) ... 275s Setting up libgtk-3-0t64:amd64 (3.24.48-3ubuntu1) ... 275s Processing triggers for install-info (7.1.1-1) ... 276s Processing triggers for libc-bin (2.41-1ubuntu1) ... 276s Processing triggers for ca-certificates-java (20240118) ... 276s Adding debian:ACCVRAIZ1.pem 276s Adding debian:AC_RAIZ_FNMT-RCM.pem 276s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 276s Adding debian:ANF_Secure_Server_Root_CA.pem 276s Adding debian:Actalis_Authentication_Root_CA.pem 276s Adding debian:AffirmTrust_Commercial.pem 276s Adding debian:AffirmTrust_Networking.pem 276s Adding debian:AffirmTrust_Premium.pem 276s Adding debian:AffirmTrust_Premium_ECC.pem 276s Adding debian:Amazon_Root_CA_1.pem 276s Adding debian:Amazon_Root_CA_2.pem 276s Adding debian:Amazon_Root_CA_3.pem 276s Adding debian:Amazon_Root_CA_4.pem 276s Adding debian:Atos_TrustedRoot_2011.pem 276s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 276s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 276s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 276s Adding debian:BJCA_Global_Root_CA1.pem 276s Adding debian:BJCA_Global_Root_CA2.pem 276s Adding debian:Baltimore_CyberTrust_Root.pem 276s Adding debian:Buypass_Class_2_Root_CA.pem 276s Adding debian:Buypass_Class_3_Root_CA.pem 276s Adding debian:CA_Disig_Root_R2.pem 276s Adding debian:CFCA_EV_ROOT.pem 276s Adding debian:COMODO_Certification_Authority.pem 276s Adding debian:COMODO_ECC_Certification_Authority.pem 276s Adding debian:COMODO_RSA_Certification_Authority.pem 276s Adding debian:Certainly_Root_E1.pem 276s Adding debian:Certainly_Root_R1.pem 276s Adding debian:Certigna.pem 276s Adding debian:Certigna_Root_CA.pem 276s Adding debian:Certum_EC-384_CA.pem 276s Adding debian:Certum_Trusted_Network_CA.pem 276s Adding debian:Certum_Trusted_Network_CA_2.pem 276s Adding debian:Certum_Trusted_Root_CA.pem 276s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 276s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 276s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 276s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 276s Adding debian:Comodo_AAA_Services_root.pem 276s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 276s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 276s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 276s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 276s Adding debian:DigiCert_Assured_ID_Root_CA.pem 276s Adding debian:DigiCert_Assured_ID_Root_G2.pem 276s Adding debian:DigiCert_Assured_ID_Root_G3.pem 276s Adding debian:DigiCert_Global_Root_CA.pem 276s Adding debian:DigiCert_Global_Root_G2.pem 276s Adding debian:DigiCert_Global_Root_G3.pem 276s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 276s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 276s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 276s Adding debian:DigiCert_Trusted_Root_G4.pem 276s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 276s Adding debian:Entrust_Root_Certification_Authority.pem 276s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 276s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 276s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 276s Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem 276s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 276s Adding debian:GLOBALTRUST_2020.pem 276s Adding debian:GTS_Root_R1.pem 276s Adding debian:GTS_Root_R2.pem 276s Adding debian:GTS_Root_R3.pem 276s Adding debian:GTS_Root_R4.pem 276s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 276s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 276s Adding debian:GlobalSign_Root_CA.pem 276s Adding debian:GlobalSign_Root_CA_-_R3.pem 276s Adding debian:GlobalSign_Root_CA_-_R6.pem 276s Adding debian:GlobalSign_Root_E46.pem 276s Adding debian:GlobalSign_Root_R46.pem 276s Adding debian:Go_Daddy_Class_2_CA.pem 276s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 276s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 276s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 276s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 276s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 276s Adding debian:HiPKI_Root_CA_-_G1.pem 276s Adding debian:Hongkong_Post_Root_CA_3.pem 276s Adding debian:ISRG_Root_X1.pem 276s Adding debian:ISRG_Root_X2.pem 276s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 276s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 276s Adding debian:Izenpe.com.pem 276s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 276s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 276s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 276s Adding debian:NAVER_Global_Root_Certification_Authority.pem 276s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 276s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 276s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 276s Adding debian:QuoVadis_Root_CA_1_G3.pem 276s Adding debian:QuoVadis_Root_CA_2.pem 276s Adding debian:QuoVadis_Root_CA_2_G3.pem 276s Adding debian:QuoVadis_Root_CA_3.pem 276s Adding debian:QuoVadis_Root_CA_3_G3.pem 276s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 276s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 276s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 276s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 276s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 276s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 276s Adding debian:SZAFIR_ROOT_CA2.pem 276s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 276s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 276s Adding debian:SecureSign_RootCA11.pem 276s Adding debian:SecureSign_Root_CA12.pem 276s Adding debian:SecureSign_Root_CA14.pem 276s Adding debian:SecureSign_Root_CA15.pem 276s Adding debian:SecureTrust_CA.pem 276s Adding debian:Secure_Global_CA.pem 276s Adding debian:Security_Communication_ECC_RootCA1.pem 276s Adding debian:Security_Communication_RootCA2.pem 276s Adding debian:Security_Communication_RootCA3.pem 276s Adding debian:Starfield_Class_2_CA.pem 276s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 276s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 276s Adding debian:SwissSign_Gold_CA_-_G2.pem 276s Adding debian:SwissSign_Silver_CA_-_G2.pem 276s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 276s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 276s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 276s Adding debian:TWCA_CYBER_Root_CA.pem 276s Adding debian:TWCA_Global_Root_CA.pem 276s Adding debian:TWCA_Root_Certification_Authority.pem 276s Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem 276s Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem 276s Adding debian:TeliaSonera_Root_CA_v1.pem 276s Adding debian:Telia_Root_CA_v2.pem 276s Adding debian:TrustAsia_Global_Root_CA_G3.pem 276s Adding debian:TrustAsia_Global_Root_CA_G4.pem 276s Adding debian:Trustwave_Global_Certification_Authority.pem 276s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 276s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 276s Adding debian:TunTrust_Root_CA.pem 276s Adding debian:UCA_Extended_Validation_Root.pem 276s Adding debian:UCA_Global_G2_Root.pem 276s Adding debian:USERTrust_ECC_Certification_Authority.pem 276s Adding debian:USERTrust_RSA_Certification_Authority.pem 276s Adding debian:XRamp_Global_CA_Root.pem 276s Adding debian:certSIGN_ROOT_CA.pem 276s Adding debian:certSIGN_Root_CA_G2.pem 276s Adding debian:e-Szigno_Root_CA_2017.pem 276s Adding debian:ePKI_Root_Certification_Authority.pem 276s Adding debian:emSign_ECC_Root_CA_-_C3.pem 276s Adding debian:emSign_ECC_Root_CA_-_G3.pem 276s Adding debian:emSign_Root_CA_-_C1.pem 276s Adding debian:emSign_Root_CA_-_G1.pem 276s Adding debian:vTrus_ECC_Root_CA.pem 276s Adding debian:vTrus_Root_CA.pem 276s done. 276s Setting up openjdk-21-jre:amd64 (21.0.6+7-1) ... 276s Setting up junit4 (4.13.2-5) ... 276s Setting up openjdk-21-jdk-headless:amd64 (21.0.6+7-1) ... 276s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode 276s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode 276s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode 276s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode 276s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode 276s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode 276s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode 276s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode 276s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode 276s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode 277s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode 277s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode 277s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode 277s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode 277s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode 277s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode 277s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode 277s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode 277s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode 277s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode 277s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode 277s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jwebserver to provide /usr/bin/jwebserver (jwebserver) in auto mode 277s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode 277s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode 277s Setting up default-jre-headless (2:1.21-76) ... 277s Setting up default-jre (2:1.21-76) ... 277s Setting up openjdk-21-jdk:amd64 (21.0.6+7-1) ... 277s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode 277s Setting up default-jdk-headless (2:1.21-76) ... 277s Setting up libjson-java (3.1.0+dfsg-2) ... 277s Setting up libhtsjdk-java (4.1.3+dfsg-2) ... 277s Setting up default-jdk (2:1.21-76) ... 277s Setting up pilon (1.24-4) ... 277s Setting up unicycler (0.5.1+dfsg-3) ... 278s autopkgtest [10:48:27]: test run-unit-test: [----------------------- 278s 278s Starting Unicycler (2025-03-13 10:48:27) 278s Welcome to Unicycler, an assembly pipeline for bacterial genomes. Since you 278s provided only short reads, Unicycler will essentially function as a SPAdes- 278s optimiser. It will try many k-mer sizes, choose the best based on contig length 278s and graph connectivity, and scaffold the graph using SPAdes repeat resolution. 278s For more information, please see https://github.com/rrwick/Unicycler 278s 278s Command: /usr/bin/unicycler -1 short_reads_1.fastq.gz -2 short_reads_2.fastq.gz -o illumina_assembly 278s 278s Unicycler version: v0.5.1 278s Using 2 threads 278s 278s Making output directory: 278s /tmp/autopkgtest.qROGei/autopkgtest_tmp/illumina_assembly 278s 278s Dependencies: 279s Program Version Status  279s spades 4.0.0 good 279s racon not used 279s makeblastdb 2.16.0+ good 279s tblastn 2.16.0+ good 279s 279s 279s Choosing k-mer range for assembly (2025-03-13 10:48:28) 279s Unicycler chooses a k-mer range for SPAdes based on the length of the input 279s reads. It uses a wide range of many k-mer sizes to maximise the chance of 279s finding an ideal assembly. 279s 279s SPAdes maximum k-mer: 127 279s Median read length: 125 279s K-mer range: 25, 49, 67, 81, 93, 103, 111, 119 279s 279s 279s SPAdes assemblies (2025-03-13 10:48:28) 279s Unicycler now uses SPAdes to assemble the short reads. It scores the 279s assembly graph for each k-mer using the number of contigs (fewer is better) and 279s the number of dead ends (fewer is better). The score function is 1/(c*(d+2)), 279s where c is the contig count and d is the dead end count. 279s 279s spades -o /tmp/autopkgtest.qROGei/autopkgtest_tmp/illumina_assembly/spades_assembly -k 25 --threads 2 --gfa11 --isolate -1 /tmp/autopkgtest.qROGei/autopkgtest_tmp/short_reads_1.fastq.gz -2 /tmp/autopkgtest.qROGei/autopkgtest_tmp/short_reads_2.fastq.gz -m 1024 280s Error: SPAdes encountered an error: 280s 280s autopkgtest [10:48:29]: test run-unit-test: -----------------------] 280s autopkgtest [10:48:29]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 280s run-unit-test FAIL non-zero exit status 1 281s autopkgtest [10:48:30]: @@@@@@@@@@@@@@@@@@@@ summary 281s run-unit-test FAIL non-zero exit status 1 288s nova [W] Skipping flock for amd64 288s Creating nova instance adt-plucky-amd64-unicycler-20250313-104349-juju-7f2275-prod-proposed-migration-environment-2-00cd3ec4-29b1-4d87-b565-d1036106183d from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)... 288s nova [W] Timed out waiting for b2098661-8d18-4d58-ae06-7cd4a0362f97 to get deleted.