0s autopkgtest [23:25:41]: starting date and time: 2024-11-14 23:25:41+0000 0s autopkgtest [23:25:41]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [23:25:41]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.l46wsira/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade textdistance --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-25.secgroup --name adt-plucky-amd64-textdistance-20241114-232541-juju-7f2275-prod-proposed-migration-environment-15-3e02b258-b269-4ee5-8119-37709dc21d21 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 42s autopkgtest [23:26:23]: testbed dpkg architecture: amd64 42s autopkgtest [23:26:23]: testbed apt version: 2.9.8 42s autopkgtest [23:26:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup 44s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 44s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 44s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.1 kB] 44s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 44s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1015 kB] 44s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [141 kB] 44s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [74.2 kB] 44s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 44s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [793 kB] 44s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [289 kB] 44s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9128 B] 44s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [740 B] 45s Fetched 2550 kB in 1s (1979 kB/s) 45s Reading package lists... 47s Reading package lists... 48s Building dependency tree... 48s Reading state information... 48s Calculating upgrade... 49s The following NEW packages will be installed: 49s python3.13-gdbm 49s The following packages will be upgraded: 49s libcap-ng0 libpython3-stdlib lxd-installer man-db pastebinit python3 49s python3-gdbm python3-minimal python3-systemd 49s 9 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 49s Need to get 1534 kB of archives. 49s After this operation, 327 kB of additional disk space will be used. 49s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 49s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 49s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 49s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-3build1 [15.6 kB] 49s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 man-db amd64 2.13.0-1 [1352 kB] 49s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 49s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 49s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 lxd-installer all 9 [5084 B] 49s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 pastebinit all 1.7.1-1 [14.9 kB] 49s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build5 [45.7 kB] 50s Preconfiguring packages ... 50s Fetched 1534 kB in 1s (2507 kB/s) 50s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 50s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 50s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 50s Setting up python3-minimal (3.12.7-1) ... 50s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 50s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 50s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 50s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 50s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 50s Preparing to unpack .../libcap-ng0_0.8.5-3build1_amd64.deb ... 50s Unpacking libcap-ng0:amd64 (0.8.5-3build1) over (0.8.5-1) ... 50s Setting up libcap-ng0:amd64 (0.8.5-3build1) ... 50s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 50s Preparing to unpack .../0-man-db_2.13.0-1_amd64.deb ... 50s Unpacking man-db (2.13.0-1) over (2.12.1-3) ... 51s Selecting previously unselected package python3.13-gdbm. 51s Preparing to unpack .../1-python3.13-gdbm_3.13.0-2_amd64.deb ... 51s Unpacking python3.13-gdbm (3.13.0-2) ... 51s Preparing to unpack .../2-python3-gdbm_3.12.7-1_amd64.deb ... 51s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 51s Preparing to unpack .../3-lxd-installer_9_all.deb ... 51s Unpacking lxd-installer (9) over (8) ... 51s Preparing to unpack .../4-pastebinit_1.7.1-1_all.deb ... 51s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ... 51s Preparing to unpack .../5-python3-systemd_235-1build5_amd64.deb ... 51s Unpacking python3-systemd (235-1build5) over (235-1build4) ... 51s Setting up man-db (2.13.0-1) ... 51s Updating database of manual pages ... 53s man-db.service is a disabled or a static unit not running, not starting it. 53s Setting up lxd-installer (9) ... 53s Setting up python3.13-gdbm (3.13.0-2) ... 53s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 53s Setting up python3 (3.12.7-1) ... 54s Setting up python3-systemd (235-1build5) ... 54s Setting up python3-gdbm:amd64 (3.12.7-1) ... 54s Setting up pastebinit (1.7.1-1) ... 54s Processing triggers for libc-bin (2.40-1ubuntu3) ... 54s Reading package lists... 54s Building dependency tree... 54s Reading state information... 54s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 55s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 55s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 55s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 55s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 56s Reading package lists... 56s Reading package lists... 56s Building dependency tree... 56s Reading state information... 57s Calculating upgrade... 57s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 57s Reading package lists... 57s Building dependency tree... 57s Reading state information... 57s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 57s autopkgtest [23:26:38]: rebooting testbed after setup commands that affected boot 75s autopkgtest [23:26:56]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 78s autopkgtest [23:26:59]: @@@@@@@@@@@@@@@@@@@@ apt-source textdistance 80s Get:1 http://ftpmaster.internal/ubuntu plucky/universe textdistance 4.6.3-4 (dsc) [2362 B] 80s Get:2 http://ftpmaster.internal/ubuntu plucky/universe textdistance 4.6.3-4 (tar) [46.6 kB] 80s Get:3 http://ftpmaster.internal/ubuntu plucky/universe textdistance 4.6.3-4 (diff) [4188 B] 80s gpgv: Signature made Mon Sep 9 19:25:22 2024 UTC 80s gpgv: using RSA key 7E1AC3FA27A649284C323EF6695C429316C07BFE 80s gpgv: issuer "jdg@debian.org" 80s gpgv: Can't check signature: No public key 80s dpkg-source: warning: cannot verify inline signature for ./textdistance_4.6.3-4.dsc: no acceptable signature found 80s autopkgtest [23:27:01]: testing package textdistance version 4.6.3-4 81s autopkgtest [23:27:02]: build not needed 81s autopkgtest [23:27:02]: test pybuild-autopkgtest: preparing testbed 83s Reading package lists... 83s Building dependency tree... 83s Reading state information... 83s Starting pkgProblemResolver with broken count: 0 83s Starting 2 pkgProblemResolver with broken count: 0 83s Done 83s The following additional packages will be installed: 83s autoconf automake autopoint autotools-dev build-essential cpp cpp-14 83s cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu debhelper debugedit 83s dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-14 83s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 83s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian 83s libarchive-zip-perl libasan8 libblas3 libcc1-0 libdebhelper-perl 83s libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 libgomp1 83s libhwasan0 libisl23 libitm1 liblapack3 liblsan0 libmpc3 83s libpython3.13-minimal libpython3.13-stdlib libquadmath0 libstdc++-14-dev 83s libtool libtsan2 libubsan1 m4 po-debconf pybuild-plugin-autopkgtest 83s python3-all python3-dateutil python3-hypothesis python3-iniconfig 83s python3-isort python3-jellyfish python3-levenshtein python3-numpy 83s python3-packaging python3-pluggy python3-pylev python3-pytest 83s python3-pyxdameraulevenshtein python3-rapidfuzz python3-six 83s python3-sortedcontainers python3-textdistance python3.13 python3.13-minimal 83s Suggested packages: 83s autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales 83s cpp-14-doc dh-make flit python3-build python3-installer python3-wheel 83s g++-multilib g++-14-multilib gcc-14-doc gcc-multilib manpages-dev flex bison 83s gdb gcc-doc gcc-14-multilib gdb-x86-64-linux-gnu gettext-doc libasprintf-dev 83s libgettextpo-dev libstdc++-14-doc libtool-doc gfortran | fortran95-compiler 83s gcj-jdk m4-doc libmail-box-perl python-hypothesis-doc python-jellyfish-doc 83s gfortran python-numpy-doc python3-dev python-rapidfuzz-doc 83s python-sortedcontainers-doc python3.13-venv python3.13-doc binfmt-support 83s Recommended packages: 83s libarchive-cpio-perl libltdl-dev libmail-sendmail-perl python3-click 83s The following NEW packages will be installed: 83s autoconf automake autopkgtest-satdep autopoint autotools-dev build-essential 83s cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu debhelper debugedit 83s dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-14 83s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 83s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian 83s libarchive-zip-perl libasan8 libblas3 libcc1-0 libdebhelper-perl 83s libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 libgomp1 83s libhwasan0 libisl23 libitm1 liblapack3 liblsan0 libmpc3 83s libpython3.13-minimal libpython3.13-stdlib libquadmath0 libstdc++-14-dev 83s libtool libtsan2 libubsan1 m4 po-debconf pybuild-plugin-autopkgtest 83s python3-all python3-dateutil python3-hypothesis python3-iniconfig 83s python3-isort python3-jellyfish python3-levenshtein python3-numpy 83s python3-packaging python3-pluggy python3-pylev python3-pytest 83s python3-pyxdameraulevenshtein python3-rapidfuzz python3-six 83s python3-sortedcontainers python3-textdistance python3.13 python3.13-minimal 83s 0 upgraded, 70 newly installed, 0 to remove and 0 not upgraded. 83s Need to get 87.6 MB/87.6 MB of archives. 83s After this operation, 311 MB of additional disk space will be used. 83s Get:1 /tmp/autopkgtest.620UzN/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [860 B] 84s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 84s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 84s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 m4 amd64 1.4.19-4build1 [244 kB] 84s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 autoconf all 2.72-3 [382 kB] 84s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 autotools-dev all 20220109.1 [44.9 kB] 84s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 84s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 autopoint all 0.22.5-2 [616 kB] 84s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 84s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 84s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [11.9 MB] 85s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-8ubuntu1 [1030 B] 85s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 85s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 85s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-8ubuntu1 [47.6 kB] 85s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 85s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-8ubuntu1 [29.1 kB] 85s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-8ubuntu1 [2998 kB] 85s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-8ubuntu1 [1317 kB] 85s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-8ubuntu1 [2732 kB] 85s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-8ubuntu1 [1177 kB] 85s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-8ubuntu1 [1634 kB] 85s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-8ubuntu1 [153 kB] 85s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-8ubuntu1 [2814 kB] 85s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [23.3 MB] 86s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-8ubuntu1 [528 kB] 86s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 86s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 86s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-8ubuntu1 [2504 kB] 86s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [13.3 MB] 86s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-8ubuntu1 [19.9 kB] 86s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 86s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 86s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 86s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 86s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libtool all 2.4.7-7build1 [166 kB] 86s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-autoreconf all 20 [16.1 kB] 86s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] 86s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 86s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-strip-nondeterminism all 1.14.0-1 [5058 B] 86s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 debugedit amd64 1:5.1-1 [46.9 kB] 86s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 dwz amd64 0.15-1build6 [115 kB] 86s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 gettext amd64 0.22.5-2 [948 kB] 86s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 86s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] 86s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 debhelper all 13.20ubuntu1 [893 kB] 86s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 dh-python all 6.20241024 [112 kB] 86s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 86s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 86s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 86s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 86s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-autopkgtest all 6.20241024 [1746 B] 86s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 86s Get:54 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 86s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.16.0-7 [13.1 kB] 86s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 86s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-sortedcontainers all 2.4.0-2 [27.6 kB] 86s Get:58 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-hypothesis all 6.116.0-1 [326 kB] 86s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 86s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-isort all 5.13.2-2 [59.3 kB] 86s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-jellyfish amd64 1.1.0-1build1 [299 kB] 86s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-rapidfuzz amd64 3.9.4+ds-1 [2028 kB] 86s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-levenshtein amd64 0.26.0-1 [130 kB] 86s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 87s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 87s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 87s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pylev all 1.4.0-1 [6594 B] 87s Get:68 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 87s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyxdameraulevenshtein amd64 1.7.1-2build3 [25.5 kB] 87s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-textdistance all 4.6.3-4 [37.0 kB] 87s Fetched 87.6 MB in 3s (26.8 MB/s) 87s Selecting previously unselected package libpython3.13-minimal:amd64. 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75555 files and directories currently installed.) 87s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_amd64.deb ... 87s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 87s Selecting previously unselected package python3.13-minimal. 87s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_amd64.deb ... 87s Unpacking python3.13-minimal (3.13.0-2) ... 87s Selecting previously unselected package m4. 87s Preparing to unpack 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starts ============================== 103s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 103s rootdir: /tmp/autopkgtest.620UzN/autopkgtest_tmp/build 103s configfile: setup.cfg 103s plugins: typeguard-4.4.1, hypothesis-6.116.0 103s collected 430 items 103s 122s tests/test_common.py .....................FF......................FF.... [ 11%] 158s ..................FF......................FF......................FF.... [ 28%] 158s ..................FF......................F.. [ 39%] 158s tests/test_compression/test_arith_ncd.py .... [ 40%] 158s tests/test_compression/test_bwtrle_ncd.py .. [ 40%] 158s tests/test_compression/test_bz2_ncd.py .. [ 40%] 162s tests/test_compression/test_common.py ............................ [ 47%] 162s tests/test_compression/test_entropy_ncd.py ........ [ 49%] 163s tests/test_compression/test_sqrt_ncd.py ....... [ 50%] 163s tests/test_edit/test_damerau_levenshtein.py ............................ [ 57%] 163s .... [ 58%] 163s tests/test_edit/test_editex.py ............ [ 61%] 163s tests/test_edit/test_gotoh.py FFFFF [ 62%] 163s tests/test_edit/test_hamming.py ...... [ 63%] 163s tests/test_edit/test_jaro.py ........ [ 65%] 163s tests/test_edit/test_jaro_winkler.py ....... [ 67%] 163s tests/test_edit/test_levenshtein.py ...... [ 68%] 163s tests/test_edit/test_matrix.py .......... [ 70%] 163s tests/test_edit/test_mlipns.py ........... [ 73%] 163s tests/test_edit/test_needleman_wunsch.py FFFFF [ 74%] 164s tests/test_edit/test_smith_waterman.py FFFFF [ 75%] 164s tests/test_edit/test_strcmp95.py .... [ 76%] 215s tests/test_external.py FF..FFF..FFF..FFF..FFF..FFF..F [ 83%] 215s tests/test_phonetic/test_editex.py .............................. [ 90%] 215s tests/test_sequence/test_lcsseq.py ........... [ 93%] 215s tests/test_sequence/test_lcsstr.py .......... [ 95%] 215s tests/test_token/test_bag.py .... [ 96%] 215s tests/test_token/test_cosine.py .. [ 96%] 215s tests/test_token/test_jaccard.py ..... [ 98%] 215s tests/test_token/test_monge_elkan.py .. [ 98%] 215s tests/test_token/test_overlap.py ... [ 99%] 216s tests/test_token/test_sorensen.py ... [100%] 216s 216s =================================== FAILURES =================================== 216s _______________________ test_normalization_range[alg21] ________________________ 216s 216s alg = NeedlemanWunsch({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}) 216s 216s @pytest.mark.parametrize('alg', ALGS) 216s > @hypothesis.given( 216s left=hypothesis.strategies.text(), 216s right=hypothesis.strategies.text(), 216s ) 216s 216s tests/test_common.py:50: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s tests/test_common.py:55: in test_normalization_range 216s assert 0 <= alg.normalized_distance(left, right) <= 1 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:467: in normalized_distance 216s return (self.distance(*sequences) - minimum) / (maximum - minimum) 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:458: in distance 216s return -1 * self.similarity(*sequences) 216s /usr/lib/python3/dist-packages/textdistance/algorithms/base.py:179: in similarity 216s return self(*sequences) 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s self = NeedlemanWunsch({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}) 216s s1 = '', s2 = '0' 216s 216s def __call__(self, s1: Sequence[T], s2: Sequence[T]) -> float: 216s if not numpy: 216s > raise ImportError('Please, install numpy for Needleman-Wunsch measure') 216s E ImportError: Please, install numpy for Needleman-Wunsch measure 216s E Falsifying example: test_normalization_range( 216s E alg=NeedlemanWunsch({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}), 216s E left='', # or any other generated value 216s E right='0', 216s E ) 216s 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:480: ImportError 216s _______________________ test_normalization_range[alg22] ________________________ 216s 216s alg = SmithWaterman({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}) 216s 216s @pytest.mark.parametrize('alg', ALGS) 216s > @hypothesis.given( 216s left=hypothesis.strategies.text(), 216s right=hypothesis.strategies.text(), 216s ) 216s 216s tests/test_common.py:50: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s tests/test_common.py:55: in test_normalization_range 216s assert 0 <= alg.normalized_distance(left, right) <= 1 216s /usr/lib/python3/dist-packages/textdistance/algorithms/base.py:50: in normalized_distance 216s return self.distance(*sequences) / maximum 216s /usr/lib/python3/dist-packages/textdistance/algorithms/base.py:176: in distance 216s return self.maximum(*sequences) - self.similarity(*sequences) 216s /usr/lib/python3/dist-packages/textdistance/algorithms/base.py:179: in similarity 216s return self(*sequences) 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s self = SmithWaterman({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}) 216s s1 = '0', s2 = '0' 216s 216s def __call__(self, s1: Sequence[T], s2: Sequence[T]) -> float: 216s if not numpy: 216s > raise ImportError('Please, install numpy for Smith-Waterman measure') 216s E ImportError: Please, install numpy for Smith-Waterman measure 216s E Falsifying example: test_normalization_range( 216s E alg=SmithWaterman({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}), 216s E left='0', 216s E right='0', 216s E ) 216s E Explanation: 216s E These lines were always and only run by failing examples: 216s E /usr/lib/python3/dist-packages/textdistance/algorithms/base.py:179 216s E /usr/lib/python3/dist-packages/textdistance/algorithms/base.py:50 216s 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:537: ImportError 216s _______________________ test_normalization_by_one[alg21] _______________________ 216s 216s alg = NeedlemanWunsch({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}) 216s 216s @pytest.mark.parametrize('alg', ALGS) 216s > @hypothesis.given( 216s left=hypothesis.strategies.text(), 216s right=hypothesis.strategies.text(), 216s ) 216s 216s tests/test_common.py:60: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s tests/test_common.py:65: in test_normalization_by_one 216s d = alg.normalized_distance(left, right) 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:467: in normalized_distance 216s return (self.distance(*sequences) - minimum) / (maximum - minimum) 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:458: in distance 216s return -1 * self.similarity(*sequences) 216s /usr/lib/python3/dist-packages/textdistance/algorithms/base.py:179: in similarity 216s return self(*sequences) 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s self = NeedlemanWunsch({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}) 216s s1 = '', s2 = '0' 216s 216s def __call__(self, s1: Sequence[T], s2: Sequence[T]) -> float: 216s if not numpy: 216s > raise ImportError('Please, install numpy for Needleman-Wunsch measure') 216s E ImportError: Please, install numpy for Needleman-Wunsch measure 216s E Falsifying example: test_normalization_by_one( 216s E alg=NeedlemanWunsch({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}), 216s E left='', # or any other generated value 216s E right='0', 216s E ) 216s 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:480: ImportError 216s _______________________ test_normalization_by_one[alg22] _______________________ 216s 216s alg = SmithWaterman({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}) 216s 216s @pytest.mark.parametrize('alg', ALGS) 216s > @hypothesis.given( 216s left=hypothesis.strategies.text(), 216s right=hypothesis.strategies.text(), 216s ) 216s 216s tests/test_common.py:60: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s tests/test_common.py:65: in test_normalization_by_one 216s d = alg.normalized_distance(left, right) 216s /usr/lib/python3/dist-packages/textdistance/algorithms/base.py:50: in normalized_distance 216s return self.distance(*sequences) / maximum 216s /usr/lib/python3/dist-packages/textdistance/algorithms/base.py:176: in distance 216s return self.maximum(*sequences) - self.similarity(*sequences) 216s /usr/lib/python3/dist-packages/textdistance/algorithms/base.py:179: in similarity 216s return self(*sequences) 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s self = SmithWaterman({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}) 216s s1 = '0', s2 = '0' 216s 216s def __call__(self, s1: Sequence[T], s2: Sequence[T]) -> float: 216s if not numpy: 216s > raise ImportError('Please, install numpy for Smith-Waterman measure') 216s E ImportError: Please, install numpy for Smith-Waterman measure 216s E Falsifying example: test_normalization_by_one( 216s E alg=SmithWaterman({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}), 216s E left='0', 216s E right='0', 216s E ) 216s E Explanation: 216s E These lines were always and only run by failing examples: 216s E /usr/lib/python3/dist-packages/textdistance/algorithms/base.py:179 216s E /usr/lib/python3/dist-packages/textdistance/algorithms/base.py:50 216s 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:537: ImportError 216s ________________________ test_normalization_same[alg21] ________________________ 216s 216s alg = NeedlemanWunsch({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}) 216s 216s @pytest.mark.parametrize('alg', ALGS) 216s > @hypothesis.given(text=hypothesis.strategies.text()) 216s 216s tests/test_common.py:71: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s tests/test_common.py:73: in test_normalization_same 216s assert alg.normalized_distance(text, text) == 0 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:467: in normalized_distance 216s return (self.distance(*sequences) - minimum) / (maximum - minimum) 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:458: in distance 216s return -1 * self.similarity(*sequences) 216s /usr/lib/python3/dist-packages/textdistance/algorithms/base.py:179: in similarity 216s return self(*sequences) 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s self = NeedlemanWunsch({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}) 216s s1 = '0', s2 = '0' 216s 216s def __call__(self, s1: Sequence[T], s2: Sequence[T]) -> float: 216s if not numpy: 216s > raise ImportError('Please, install numpy for Needleman-Wunsch measure') 216s E ImportError: Please, install numpy for Needleman-Wunsch measure 216s E Falsifying example: test_normalization_same( 216s E alg=NeedlemanWunsch({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}), 216s E text='0', 216s E ) 216s 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:480: ImportError 216s ________________________ test_normalization_same[alg22] ________________________ 216s 216s alg = SmithWaterman({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}) 216s 216s @pytest.mark.parametrize('alg', ALGS) 216s > @hypothesis.given(text=hypothesis.strategies.text()) 216s 216s tests/test_common.py:71: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s tests/test_common.py:75: in test_normalization_same 216s assert alg.distance(text, text) == 0 216s /usr/lib/python3/dist-packages/textdistance/algorithms/base.py:176: in distance 216s return self.maximum(*sequences) - self.similarity(*sequences) 216s /usr/lib/python3/dist-packages/textdistance/algorithms/base.py:179: in similarity 216s return self(*sequences) 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s self = SmithWaterman({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}) 216s s1 = '', s2 = '' 216s 216s def __call__(self, s1: Sequence[T], s2: Sequence[T]) -> float: 216s if not numpy: 216s > raise ImportError('Please, install numpy for Smith-Waterman measure') 216s E ImportError: Please, install numpy for Smith-Waterman measure 216s E Falsifying example: test_normalization_same( 216s E alg=SmithWaterman({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}), 216s E text='', # or any other generated value 216s E ) 216s 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:537: ImportError 216s _____________________ test_normalization_monotonic[alg21] ______________________ 216s 216s alg = NeedlemanWunsch({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}) 216s 216s @pytest.mark.parametrize('alg', ALGS) 216s > @hypothesis.settings(deadline=None) 216s 216s tests/test_common.py:80: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s tests/test_common.py:86: in test_normalization_monotonic 216s nd = alg.normalized_distance(left, right) 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:467: in normalized_distance 216s return (self.distance(*sequences) - minimum) / (maximum - minimum) 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:458: in distance 216s return -1 * self.similarity(*sequences) 216s /usr/lib/python3/dist-packages/textdistance/algorithms/base.py:179: in similarity 216s return self(*sequences) 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s self = NeedlemanWunsch({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}) 216s s1 = '0', s2 = '0' 216s 216s def __call__(self, s1: Sequence[T], s2: Sequence[T]) -> float: 216s if not numpy: 216s > raise ImportError('Please, install numpy for Needleman-Wunsch measure') 216s E ImportError: Please, install numpy for Needleman-Wunsch measure 216s E Falsifying example: test_normalization_monotonic( 216s E # The test always failed when commented parts were varied together. 216s E alg=NeedlemanWunsch({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}), 216s E left='0', # or any other generated value 216s E right='0', # or any other generated value 216s E ) 216s 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:480: ImportError 216s _____________________ test_normalization_monotonic[alg22] ______________________ 216s 216s alg = SmithWaterman({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}) 216s 216s @pytest.mark.parametrize('alg', ALGS) 216s > @hypothesis.settings(deadline=None) 216s 216s tests/test_common.py:80: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s tests/test_common.py:86: in test_normalization_monotonic 216s nd = alg.normalized_distance(left, right) 216s /usr/lib/python3/dist-packages/textdistance/algorithms/base.py:50: in normalized_distance 216s return self.distance(*sequences) / maximum 216s /usr/lib/python3/dist-packages/textdistance/algorithms/base.py:176: in distance 216s return self.maximum(*sequences) - self.similarity(*sequences) 216s /usr/lib/python3/dist-packages/textdistance/algorithms/base.py:179: in similarity 216s return self(*sequences) 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s self = SmithWaterman({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}) 216s s1 = '0', s2 = '0' 216s 216s def __call__(self, s1: Sequence[T], s2: Sequence[T]) -> float: 216s if not numpy: 216s > raise ImportError('Please, install numpy for Smith-Waterman measure') 216s E ImportError: Please, install numpy for Smith-Waterman measure 216s E Falsifying example: test_normalization_monotonic( 216s E # The test always failed when commented parts were varied together. 216s E alg=SmithWaterman({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}), 216s E left='0', # or any other generated value 216s E right='0', # or any other generated value 216s E ) 216s 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:537: ImportError 216s _________________________ test_no_common_chars[alg21] __________________________ 216s 216s alg = NeedlemanWunsch({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}) 216s 216s @pytest.mark.parametrize('alg', ALGS) 216s def test_no_common_chars(alg): 216s if alg is textdistance.editex: 216s return 216s > assert alg.similarity('spam', 'qwer') == 0 216s 216s tests/test_common.py:97: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s /usr/lib/python3/dist-packages/textdistance/algorithms/base.py:179: in similarity 216s return self(*sequences) 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s self = NeedlemanWunsch({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}) 216s s1 = 'spam', s2 = 'qwer' 216s 216s def __call__(self, s1: Sequence[T], s2: Sequence[T]) -> float: 216s if not numpy: 216s > raise ImportError('Please, install numpy for Needleman-Wunsch measure') 216s E ImportError: Please, install numpy for Needleman-Wunsch measure 216s 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:480: ImportError 216s _________________________ test_no_common_chars[alg22] __________________________ 216s 216s alg = SmithWaterman({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}) 216s 216s @pytest.mark.parametrize('alg', ALGS) 216s def test_no_common_chars(alg): 216s if alg is textdistance.editex: 216s return 216s > assert alg.similarity('spam', 'qwer') == 0 216s 216s tests/test_common.py:97: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s /usr/lib/python3/dist-packages/textdistance/algorithms/base.py:179: in similarity 216s return self(*sequences) 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s self = SmithWaterman({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}) 216s s1 = 'spam', s2 = 'qwer' 216s 216s def __call__(self, s1: Sequence[T], s2: Sequence[T]) -> float: 216s if not numpy: 216s > raise ImportError('Please, install numpy for Smith-Waterman measure') 216s E ImportError: Please, install numpy for Smith-Waterman measure 216s 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:537: ImportError 216s ______________________________ test_empty[alg21] _______________________________ 216s 216s alg = NeedlemanWunsch({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}) 216s 216s @pytest.mark.parametrize('alg', ALGS) 216s def test_empty(alg): 216s > assert alg.distance('', '') == 0 216s 216s tests/test_common.py:102: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:458: in distance 216s return -1 * self.similarity(*sequences) 216s /usr/lib/python3/dist-packages/textdistance/algorithms/base.py:179: in similarity 216s return self(*sequences) 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s self = NeedlemanWunsch({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}) 216s s1 = '', s2 = '' 216s 216s def __call__(self, s1: Sequence[T], s2: Sequence[T]) -> float: 216s if not numpy: 216s > raise ImportError('Please, install numpy for Needleman-Wunsch measure') 216s E ImportError: Please, install numpy for Needleman-Wunsch measure 216s 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:480: ImportError 216s ______________________________ test_empty[alg22] _______________________________ 216s 216s alg = SmithWaterman({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}) 216s 216s @pytest.mark.parametrize('alg', ALGS) 216s def test_empty(alg): 216s > assert alg.distance('', '') == 0 216s 216s tests/test_common.py:102: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s /usr/lib/python3/dist-packages/textdistance/algorithms/base.py:176: in distance 216s return self.maximum(*sequences) - self.similarity(*sequences) 216s /usr/lib/python3/dist-packages/textdistance/algorithms/base.py:179: in similarity 216s return self(*sequences) 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s self = SmithWaterman({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}) 216s s1 = '', s2 = '' 216s 216s def __call__(self, s1: Sequence[T], s2: Sequence[T]) -> float: 216s if not numpy: 216s > raise ImportError('Please, install numpy for Smith-Waterman measure') 216s E ImportError: Please, install numpy for Smith-Waterman measure 216s 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:537: ImportError 216s _________________________ test_unequal_distance[alg21] _________________________ 216s 216s alg = NeedlemanWunsch({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}) 216s 216s @pytest.mark.parametrize('alg', ALGS) 216s def test_unequal_distance(alg): 216s if alg.maximum('', 'qwertyui'): 216s > assert alg.distance('', 'qwertyui') > 0 216s 216s tests/test_common.py:108: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:458: in distance 216s return -1 * self.similarity(*sequences) 216s /usr/lib/python3/dist-packages/textdistance/algorithms/base.py:179: in similarity 216s return self(*sequences) 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s self = NeedlemanWunsch({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}) 216s s1 = '', s2 = 'qwertyui' 216s 216s def __call__(self, s1: Sequence[T], s2: Sequence[T]) -> float: 216s if not numpy: 216s > raise ImportError('Please, install numpy for Needleman-Wunsch measure') 216s E ImportError: Please, install numpy for Needleman-Wunsch measure 216s 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:480: ImportError 216s ____________________ test_distance_ident[GATTACA-GCATGCU-0] ____________________ 216s 216s left = 'GATTACA', right = 'GCATGCU', expected = 0 216s 216s @pytest.mark.parametrize('left, right, expected', [ 216s ('GATTACA', 'GCATGCU', 0), 216s ]) 216s def test_distance_ident(left, right, expected): 216s > actual = ALG(gap_open=1, gap_ext=1, sim_func=sim_ident)(left, right) 216s 216s tests/test_edit/test_gotoh.py:35: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s self = Gotoh({'qval': 1, 'gap_open': 1, 'gap_ext': 1, 'sim_func': , 'external': True}) 216s s1 = 'GATTACA', s2 = 'GCATGCU' 216s 216s def __call__(self, s1: Sequence[T], s2: Sequence[T]) -> float: 216s if not numpy: 216s > raise ImportError('Please, install numpy for Gotoh measure') 216s E ImportError: Please, install numpy for Gotoh measure 216s 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:594: ImportError 216s ______________ test_distance_ident_with_gap_05[GATTACA-GCATGCU-0] ______________ 216s 216s left = 'GATTACA', right = 'GCATGCU', expected = 0 216s 216s @pytest.mark.parametrize('left, right, expected', [ 216s ('GATTACA', 'GCATGCU', 0), 216s ('AGACTAGTTAC', 'TGACGSTGC', 1.5), 216s ('AGACTAGTTAC', 'CGAGACGT', 1), 216s ]) 216s def test_distance_ident_with_gap_05(left, right, expected): 216s > actual = ALG(gap_open=1, gap_ext=.5, sim_func=sim_ident)(left, right) 216s 216s tests/test_edit/test_gotoh.py:45: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s self = Gotoh({'qval': 1, 'gap_open': 1, 'gap_ext': 0.5, 'sim_func': , 'external': True}) 216s s1 = 'GATTACA', s2 = 'GCATGCU' 216s 216s def __call__(self, s1: Sequence[T], s2: Sequence[T]) -> float: 216s if not numpy: 216s > raise ImportError('Please, install numpy for Gotoh measure') 216s E ImportError: Please, install numpy for Gotoh measure 216s 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:594: ImportError 216s __________ test_distance_ident_with_gap_05[AGACTAGTTAC-TGACGSTGC-1.5] __________ 216s 216s left = 'AGACTAGTTAC', right = 'TGACGSTGC', expected = 1.5 216s 216s @pytest.mark.parametrize('left, right, expected', [ 216s ('GATTACA', 'GCATGCU', 0), 216s ('AGACTAGTTAC', 'TGACGSTGC', 1.5), 216s ('AGACTAGTTAC', 'CGAGACGT', 1), 216s ]) 216s def test_distance_ident_with_gap_05(left, right, expected): 216s > actual = ALG(gap_open=1, gap_ext=.5, sim_func=sim_ident)(left, right) 216s 216s tests/test_edit/test_gotoh.py:45: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s self = Gotoh({'qval': 1, 'gap_open': 1, 'gap_ext': 0.5, 'sim_func': , 'external': True}) 216s s1 = 'AGACTAGTTAC', s2 = 'TGACGSTGC' 216s 216s def __call__(self, s1: Sequence[T], s2: Sequence[T]) -> float: 216s if not numpy: 216s > raise ImportError('Please, install numpy for Gotoh measure') 216s E ImportError: Please, install numpy for Gotoh measure 216s 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:594: ImportError 216s ___________ test_distance_ident_with_gap_05[AGACTAGTTAC-CGAGACGT-1] ____________ 216s 216s left = 'AGACTAGTTAC', right = 'CGAGACGT', expected = 1 216s 216s @pytest.mark.parametrize('left, right, expected', [ 216s ('GATTACA', 'GCATGCU', 0), 216s ('AGACTAGTTAC', 'TGACGSTGC', 1.5), 216s ('AGACTAGTTAC', 'CGAGACGT', 1), 216s ]) 216s def test_distance_ident_with_gap_05(left, right, expected): 216s > actual = ALG(gap_open=1, gap_ext=.5, sim_func=sim_ident)(left, right) 216s 216s tests/test_edit/test_gotoh.py:45: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s self = Gotoh({'qval': 1, 'gap_open': 1, 'gap_ext': 0.5, 'sim_func': , 'external': True}) 216s s1 = 'AGACTAGTTAC', s2 = 'CGAGACGT' 216s 216s def __call__(self, s1: Sequence[T], s2: Sequence[T]) -> float: 216s if not numpy: 216s > raise ImportError('Please, install numpy for Gotoh measure') 216s E ImportError: Please, install numpy for Gotoh measure 216s 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:594: ImportError 216s ___________ test_distance_ident_with_gap_5[AGACTAGTTAC-CGAGACGT--15] ___________ 216s 216s left = 'AGACTAGTTAC', right = 'CGAGACGT', expected = -15 216s 216s @pytest.mark.parametrize('left, right, expected', [ 216s ('AGACTAGTTAC', 'CGAGACGT', -15), 216s ]) 216s def test_distance_ident_with_gap_5(left, right, expected): 216s > actual = ALG(gap_open=5, gap_ext=5, sim_func=sim_ident)(left, right) 216s 216s tests/test_edit/test_gotoh.py:53: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s self = Gotoh({'qval': 1, 'gap_open': 5, 'gap_ext': 5, 'sim_func': , 'external': True}) 216s s1 = 'AGACTAGTTAC', s2 = 'CGAGACGT' 216s 216s def __call__(self, s1: Sequence[T], s2: Sequence[T]) -> float: 216s if not numpy: 216s > raise ImportError('Please, install numpy for Gotoh measure') 216s E ImportError: Please, install numpy for Gotoh measure 216s 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:594: ImportError 216s ________________ test_distance_matrix[AGACTAGTTAC-CGAGACGT-16] _________________ 216s 216s left = 'AGACTAGTTAC', right = 'CGAGACGT', expected = 16 216s 216s @pytest.mark.parametrize('left, right, expected', [ 216s ('AGACTAGTTAC', 'CGAGACGT', 16), 216s ]) 216s def test_distance_matrix(left, right, expected): 216s sim_matrix = textdistance.Matrix(NW_MATRIX, symmetric=True) 216s > actual = ALG(gap_cost=5, sim_func=sim_matrix)(left, right) 216s 216s tests/test_edit/test_needleman_wunsch.py:29: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s self = NeedlemanWunsch({'qval': 1, 'gap_cost': 5, 'sim_func': Matrix({'mat': {('A', 'A'): 10, ('G', 'G'): 7, ('C', 'C'): 9, (... 'C'): -5, ('G', 'T'): -3, ('C', 'T'): 0}, 'mismatch_cost': 0, 'match_cost': 1, 'symmetric': True}), 'external': True}) 216s s1 = 'AGACTAGTTAC', s2 = 'CGAGACGT' 216s 216s def __call__(self, s1: Sequence[T], s2: Sequence[T]) -> float: 216s if not numpy: 216s > raise ImportError('Please, install numpy for Needleman-Wunsch measure') 216s E ImportError: Please, install numpy for Needleman-Wunsch measure 216s 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:480: ImportError 216s ____________________ test_distance_ident[GATTACA-GCATGCU-0] ____________________ 216s 216s left = 'GATTACA', right = 'GCATGCU', expected = 0 216s 216s @pytest.mark.parametrize('left, right, expected', [ 216s ('GATTACA', 'GCATGCU', 0), 216s ]) 216s def test_distance_ident(left, right, expected): 216s > actual = ALG(sim_func=sim_ident)(left, right) 216s 216s tests/test_edit/test_needleman_wunsch.py:44: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s self = NeedlemanWunsch({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}) 216s s1 = 'GATTACA', s2 = 'GCATGCU' 216s 216s def __call__(self, s1: Sequence[T], s2: Sequence[T]) -> float: 216s if not numpy: 216s > raise ImportError('Please, install numpy for Needleman-Wunsch measure') 216s E ImportError: Please, install numpy for Needleman-Wunsch measure 216s 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:480: ImportError 216s ____________ test_distance_ident_with_gap_5[CGATATCAG-TGACGSTGC--5] ____________ 216s 216s left = 'CGATATCAG', right = 'TGACGSTGC', expected = -5 216s 216s @pytest.mark.parametrize('left, right, expected', [ 216s ('CGATATCAG', 'TGACGSTGC', -5), 216s ('AGACTAGTTAC', 'TGACGSTGC', -7), 216s ('AGACTAGTTAC', 'CGAGACGT', -15), 216s ]) 216s def test_distance_ident_with_gap_5(left, right, expected): 216s > actual = ALG(gap_cost=5, sim_func=sim_ident)(left, right) 216s 216s tests/test_edit/test_needleman_wunsch.py:54: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s self = NeedlemanWunsch({'qval': 1, 'gap_cost': 5, 'sim_func': , 'external': True}) 216s s1 = 'CGATATCAG', s2 = 'TGACGSTGC' 216s 216s def __call__(self, s1: Sequence[T], s2: Sequence[T]) -> float: 216s if not numpy: 216s > raise ImportError('Please, install numpy for Needleman-Wunsch measure') 216s E ImportError: Please, install numpy for Needleman-Wunsch measure 216s 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:480: ImportError 216s ___________ test_distance_ident_with_gap_5[AGACTAGTTAC-TGACGSTGC--7] ___________ 216s 216s left = 'AGACTAGTTAC', right = 'TGACGSTGC', expected = -7 216s 216s @pytest.mark.parametrize('left, right, expected', [ 216s ('CGATATCAG', 'TGACGSTGC', -5), 216s ('AGACTAGTTAC', 'TGACGSTGC', -7), 216s ('AGACTAGTTAC', 'CGAGACGT', -15), 216s ]) 216s def test_distance_ident_with_gap_5(left, right, expected): 216s > actual = ALG(gap_cost=5, sim_func=sim_ident)(left, right) 216s 216s tests/test_edit/test_needleman_wunsch.py:54: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s self = NeedlemanWunsch({'qval': 1, 'gap_cost': 5, 'sim_func': , 'external': True}) 216s s1 = 'AGACTAGTTAC', s2 = 'TGACGSTGC' 216s 216s def __call__(self, s1: Sequence[T], s2: Sequence[T]) -> float: 216s if not numpy: 216s > raise ImportError('Please, install numpy for Needleman-Wunsch measure') 216s E ImportError: Please, install numpy for Needleman-Wunsch measure 216s 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:480: ImportError 216s ___________ test_distance_ident_with_gap_5[AGACTAGTTAC-CGAGACGT--15] ___________ 216s 216s left = 'AGACTAGTTAC', right = 'CGAGACGT', expected = -15 216s 216s @pytest.mark.parametrize('left, right, expected', [ 216s ('CGATATCAG', 'TGACGSTGC', -5), 216s ('AGACTAGTTAC', 'TGACGSTGC', -7), 216s ('AGACTAGTTAC', 'CGAGACGT', -15), 216s ]) 216s def test_distance_ident_with_gap_5(left, right, expected): 216s > actual = ALG(gap_cost=5, sim_func=sim_ident)(left, right) 216s 216s tests/test_edit/test_needleman_wunsch.py:54: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s self = NeedlemanWunsch({'qval': 1, 'gap_cost': 5, 'sim_func': , 'external': True}) 216s s1 = 'AGACTAGTTAC', s2 = 'CGAGACGT' 216s 216s def __call__(self, s1: Sequence[T], s2: Sequence[T]) -> float: 216s if not numpy: 216s > raise ImportError('Please, install numpy for Needleman-Wunsch measure') 216s E ImportError: Please, install numpy for Needleman-Wunsch measure 216s 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:480: ImportError 216s ________________ test_distance_matrix[AGACTAGTTAC-CGAGACGT-26] _________________ 216s 216s left = 'AGACTAGTTAC', right = 'CGAGACGT', expected = 26 216s 216s @pytest.mark.parametrize('left, right, expected', [ 216s ('AGACTAGTTAC', 'CGAGACGT', 26), 216s ]) 216s def test_distance_matrix(left, right, expected): 216s sim_matrix = textdistance.Matrix(NW_MATRIX, symmetric=True) 216s > actual = ALG(gap_cost=5, sim_func=sim_matrix)(left, right) 216s 216s tests/test_edit/test_smith_waterman.py:29: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s self = SmithWaterman({'qval': 1, 'gap_cost': 5, 'sim_func': Matrix({'mat': {('A', 'A'): 10, ('G', 'G'): 7, ('C', 'C'): 9, ('T... 'C'): -5, ('G', 'T'): -3, ('C', 'T'): 0}, 'mismatch_cost': 0, 'match_cost': 1, 'symmetric': True}), 'external': True}) 216s s1 = 'AGACTAGTTAC', s2 = 'CGAGACGT' 216s 216s def __call__(self, s1: Sequence[T], s2: Sequence[T]) -> float: 216s if not numpy: 216s > raise ImportError('Please, install numpy for Smith-Waterman measure') 216s E ImportError: Please, install numpy for Smith-Waterman measure 216s 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:537: ImportError 216s ____________________ test_distance_ident[GATTACA-GCATGCU-0] ____________________ 216s 216s left = 'GATTACA', right = 'GCATGCU', expected = 0 216s 216s @pytest.mark.parametrize('left, right, expected', [ 216s ('GATTACA', 'GCATGCU', 0), 216s ]) 216s def test_distance_ident(left, right, expected): 216s > actual = ALG(sim_func=sim_ident)(left, right) 216s 216s tests/test_edit/test_smith_waterman.py:44: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s self = SmithWaterman({'qval': 1, 'gap_cost': 1.0, 'sim_func': , 'external': True}) 216s s1 = 'GATTACA', s2 = 'GCATGCU' 216s 216s def __call__(self, s1: Sequence[T], s2: Sequence[T]) -> float: 216s if not numpy: 216s > raise ImportError('Please, install numpy for Smith-Waterman measure') 216s E ImportError: Please, install numpy for Smith-Waterman measure 216s 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:537: ImportError 216s ____________ test_distance_ident_with_gap_5[CGATATCAG-TGACGSTGC-0] _____________ 216s 216s left = 'CGATATCAG', right = 'TGACGSTGC', expected = 0 216s 216s @pytest.mark.parametrize('left, right, expected', [ 216s ('CGATATCAG', 'TGACGSTGC', 0), 216s ('AGACTAGTTAC', 'TGACGSTGC', 1), 216s ('AGACTAGTTAC', 'CGAGACGT', 0), 216s ]) 216s def test_distance_ident_with_gap_5(left, right, expected): 216s > actual = ALG(gap_cost=5, sim_func=sim_ident)(left, right) 216s 216s tests/test_edit/test_smith_waterman.py:54: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s self = SmithWaterman({'qval': 1, 'gap_cost': 5, 'sim_func': , 'external': True}) 216s s1 = 'CGATATCAG', s2 = 'TGACGSTGC' 216s 216s def __call__(self, s1: Sequence[T], s2: Sequence[T]) -> float: 216s if not numpy: 216s > raise ImportError('Please, install numpy for Smith-Waterman measure') 216s E ImportError: Please, install numpy for Smith-Waterman measure 216s 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:537: ImportError 216s ___________ test_distance_ident_with_gap_5[AGACTAGTTAC-TGACGSTGC-1] ____________ 216s 216s left = 'AGACTAGTTAC', right = 'TGACGSTGC', expected = 1 216s 216s @pytest.mark.parametrize('left, right, expected', [ 216s ('CGATATCAG', 'TGACGSTGC', 0), 216s ('AGACTAGTTAC', 'TGACGSTGC', 1), 216s ('AGACTAGTTAC', 'CGAGACGT', 0), 216s ]) 216s def test_distance_ident_with_gap_5(left, right, expected): 216s > actual = ALG(gap_cost=5, sim_func=sim_ident)(left, right) 216s 216s tests/test_edit/test_smith_waterman.py:54: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s self = SmithWaterman({'qval': 1, 'gap_cost': 5, 'sim_func': , 'external': True}) 216s s1 = 'AGACTAGTTAC', s2 = 'TGACGSTGC' 216s 216s def __call__(self, s1: Sequence[T], s2: Sequence[T]) -> float: 216s if not numpy: 216s > raise ImportError('Please, install numpy for Smith-Waterman measure') 216s E ImportError: Please, install numpy for Smith-Waterman measure 216s 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:537: ImportError 216s ____________ test_distance_ident_with_gap_5[AGACTAGTTAC-CGAGACGT-0] ____________ 216s 216s left = 'AGACTAGTTAC', right = 'CGAGACGT', expected = 0 216s 216s @pytest.mark.parametrize('left, right, expected', [ 216s ('CGATATCAG', 'TGACGSTGC', 0), 216s ('AGACTAGTTAC', 'TGACGSTGC', 1), 216s ('AGACTAGTTAC', 'CGAGACGT', 0), 216s ]) 216s def test_distance_ident_with_gap_5(left, right, expected): 216s > actual = ALG(gap_cost=5, sim_func=sim_ident)(left, right) 216s 216s tests/test_edit/test_smith_waterman.py:54: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s self = SmithWaterman({'qval': 1, 'gap_cost': 5, 'sim_func': , 'external': True}) 216s s1 = 'AGACTAGTTAC', s2 = 'CGAGACGT' 216s 216s def __call__(self, s1: Sequence[T], s2: Sequence[T]) -> float: 216s if not numpy: 216s > raise ImportError('Please, install numpy for Smith-Waterman measure') 216s E ImportError: Please, install numpy for Smith-Waterman measure 216s 216s /usr/lib/python3/dist-packages/textdistance/algorithms/edit_based.py:537: ImportError 216s _______________________ test_compare[DamerauLevenshtein] _______________________ 216s 216s alg = 'DamerauLevenshtein' 216s 216s @pytest.mark.external 216s > @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s 216s tests/test_external.py:21: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s left = '0', right = '0', alg = 'DamerauLevenshtein' 216s 216s @pytest.mark.external 216s @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s @hypothesis.settings(deadline=None) 216s @hypothesis.given( 216s left=hypothesis.strategies.text(min_size=1), 216s right=hypothesis.strategies.text(min_size=1), 216s ) 216s def test_compare(left, right, alg): 216s for lib in libraries.get_libs(alg): 216s 216s if lib.module_name == 'jellyfish': 216s ascii = set(string.printable) 216s if (set(left) | set(right)) - ascii: 216s continue 216s 216s conditions = lib.conditions or {} 216s internal_func = getattr(textdistance, alg)(external=False, **conditions) 216s external_func = lib.get_function() 216s if external_func is None: 216s > raise RuntimeError('cannot import {}'.format(str(lib))) 216s E RuntimeError: cannot import pyxdameraulevenshtein.damerau_levenshtein_distance 216s E Falsifying example: test_compare( 216s E # The test always failed when commented parts were varied together. 216s E alg='DamerauLevenshtein', 216s E left='0', # or any other generated value 216s E right='0', # or any other generated value 216s E ) 216s 216s tests/test_external.py:39: RuntimeError 216s ____________________________ test_compare[Hamming] _____________________________ 216s 216s alg = 'Hamming' 216s 216s @pytest.mark.external 216s > @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s 216s tests/test_external.py:21: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s left = '0', right = '0', alg = 'Hamming' 216s 216s @pytest.mark.external 216s @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s @hypothesis.settings(deadline=None) 216s @hypothesis.given( 216s left=hypothesis.strategies.text(min_size=1), 216s right=hypothesis.strategies.text(min_size=1), 216s ) 216s def test_compare(left, right, alg): 216s for lib in libraries.get_libs(alg): 216s 216s if lib.module_name == 'jellyfish': 216s ascii = set(string.printable) 216s if (set(left) | set(right)) - ascii: 216s continue 216s 216s conditions = lib.conditions or {} 216s internal_func = getattr(textdistance, alg)(external=False, **conditions) 216s external_func = lib.get_function() 216s if external_func is None: 216s > raise RuntimeError('cannot import {}'.format(str(lib))) 216s E RuntimeError: cannot import Levenshtein.hamming 216s E Falsifying example: test_compare( 216s E # The test always failed when commented parts were varied together. 216s E alg='Hamming', 216s E left='0', # or any other generated value 216s E right='0', # or any other generated value 216s E ) 216s 216s tests/test_external.py:39: RuntimeError 216s __________________________ test_compare[Levenshtein] ___________________________ 216s 216s alg = 'Levenshtein' 216s 216s @pytest.mark.external 216s > @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s 216s tests/test_external.py:21: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s left = '0', right = '0', alg = 'Levenshtein' 216s 216s @pytest.mark.external 216s @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s @hypothesis.settings(deadline=None) 216s @hypothesis.given( 216s left=hypothesis.strategies.text(min_size=1), 216s right=hypothesis.strategies.text(min_size=1), 216s ) 216s def test_compare(left, right, alg): 216s for lib in libraries.get_libs(alg): 216s 216s if lib.module_name == 'jellyfish': 216s ascii = set(string.printable) 216s if (set(left) | set(right)) - ascii: 216s continue 216s 216s conditions = lib.conditions or {} 216s internal_func = getattr(textdistance, alg)(external=False, **conditions) 216s external_func = lib.get_function() 216s if external_func is None: 216s > raise RuntimeError('cannot import {}'.format(str(lib))) 216s E RuntimeError: cannot import Levenshtein.distance 216s E Falsifying example: test_compare( 216s E # The test always failed when commented parts were varied together. 216s E alg='Levenshtein', 216s E left='0', # or any other generated value 216s E right='0', # or any other generated value 216s E ) 216s 216s tests/test_external.py:39: RuntimeError 216s ______________________ test_qval[None-DamerauLevenshtein] ______________________ 216s 216s alg = 'DamerauLevenshtein', qval = None 216s 216s @pytest.mark.external 216s > @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s 216s tests/test_external.py:51: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s left = '0', right = '0', alg = 'DamerauLevenshtein', qval = None 216s 216s @pytest.mark.external 216s @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s @hypothesis.given( 216s left=hypothesis.strategies.text(min_size=1), 216s right=hypothesis.strategies.text(min_size=1), 216s ) 216s @pytest.mark.parametrize('qval', (None, 1, 2, 3)) 216s def test_qval(left: str, right: str, alg: str, qval: int | None) -> None: 216s for lib in libraries.get_libs(alg): 216s 216s if lib.module_name == 'jellyfish': 216s ascii = set(string.printable) 216s if (set(left) | set(right)) - ascii: 216s continue 216s 216s conditions = lib.conditions or {} 216s internal_func = getattr(textdistance, alg)(external=False, **conditions) 216s external_func = lib.get_function() 216s if external_func is None: 216s > raise RuntimeError('cannot import {}'.format(str(lib))) 216s E RuntimeError: cannot import pyxdameraulevenshtein.damerau_levenshtein_distance 216s E Falsifying example: test_qval( 216s E # The test always failed when commented parts were varied together. 216s E alg='DamerauLevenshtein', 216s E qval=None, 216s E left='0', # or any other generated value 216s E right='0', # or any other generated value 216s E ) 216s 216s tests/test_external.py:69: RuntimeError 216s ___________________________ test_qval[None-Hamming] ____________________________ 216s 216s alg = 'Hamming', qval = None 216s 216s @pytest.mark.external 216s > @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s 216s tests/test_external.py:51: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s left = '0', right = '0', alg = 'Hamming', qval = None 216s 216s @pytest.mark.external 216s @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s @hypothesis.given( 216s left=hypothesis.strategies.text(min_size=1), 216s right=hypothesis.strategies.text(min_size=1), 216s ) 216s @pytest.mark.parametrize('qval', (None, 1, 2, 3)) 216s def test_qval(left: str, right: str, alg: str, qval: int | None) -> None: 216s for lib in libraries.get_libs(alg): 216s 216s if lib.module_name == 'jellyfish': 216s ascii = set(string.printable) 216s if (set(left) | set(right)) - ascii: 216s continue 216s 216s conditions = lib.conditions or {} 216s internal_func = getattr(textdistance, alg)(external=False, **conditions) 216s external_func = lib.get_function() 216s if external_func is None: 216s > raise RuntimeError('cannot import {}'.format(str(lib))) 216s E RuntimeError: cannot import Levenshtein.hamming 216s E Falsifying example: test_qval( 216s E # The test always failed when commented parts were varied together. 216s E alg='Hamming', 216s E qval=None, 216s E left='0', # or any other generated value 216s E right='0', # or any other generated value 216s E ) 216s 216s tests/test_external.py:69: RuntimeError 216s _________________________ test_qval[None-Levenshtein] __________________________ 216s 216s alg = 'Levenshtein', qval = None 216s 216s @pytest.mark.external 216s > @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s 216s tests/test_external.py:51: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s left = '0', right = '0', alg = 'Levenshtein', qval = None 216s 216s @pytest.mark.external 216s @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s @hypothesis.given( 216s left=hypothesis.strategies.text(min_size=1), 216s right=hypothesis.strategies.text(min_size=1), 216s ) 216s @pytest.mark.parametrize('qval', (None, 1, 2, 3)) 216s def test_qval(left: str, right: str, alg: str, qval: int | None) -> None: 216s for lib in libraries.get_libs(alg): 216s 216s if lib.module_name == 'jellyfish': 216s ascii = set(string.printable) 216s if (set(left) | set(right)) - ascii: 216s continue 216s 216s conditions = lib.conditions or {} 216s internal_func = getattr(textdistance, alg)(external=False, **conditions) 216s external_func = lib.get_function() 216s if external_func is None: 216s > raise RuntimeError('cannot import {}'.format(str(lib))) 216s E RuntimeError: cannot import Levenshtein.distance 216s E Falsifying example: test_qval( 216s E # The test always failed when commented parts were varied together. 216s E alg='Levenshtein', 216s E qval=None, 216s E left='0', # or any other generated value 216s E right='0', # or any other generated value 216s E ) 216s 216s tests/test_external.py:69: RuntimeError 216s _______________________ test_qval[1-DamerauLevenshtein] ________________________ 216s 216s alg = 'DamerauLevenshtein', qval = 1 216s 216s @pytest.mark.external 216s > @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s 216s tests/test_external.py:51: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s left = '0', right = '0', alg = 'DamerauLevenshtein', qval = 1 216s 216s @pytest.mark.external 216s @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s @hypothesis.given( 216s left=hypothesis.strategies.text(min_size=1), 216s right=hypothesis.strategies.text(min_size=1), 216s ) 216s @pytest.mark.parametrize('qval', (None, 1, 2, 3)) 216s def test_qval(left: str, right: str, alg: str, qval: int | None) -> None: 216s for lib in libraries.get_libs(alg): 216s 216s if lib.module_name == 'jellyfish': 216s ascii = set(string.printable) 216s if (set(left) | set(right)) - ascii: 216s continue 216s 216s conditions = lib.conditions or {} 216s internal_func = getattr(textdistance, alg)(external=False, **conditions) 216s external_func = lib.get_function() 216s if external_func is None: 216s > raise RuntimeError('cannot import {}'.format(str(lib))) 216s E RuntimeError: cannot import pyxdameraulevenshtein.damerau_levenshtein_distance 216s E Falsifying example: test_qval( 216s E # The test always failed when commented parts were varied together. 216s E alg='DamerauLevenshtein', 216s E qval=1, 216s E left='0', # or any other generated value 216s E right='0', # or any other generated value 216s E ) 216s 216s tests/test_external.py:69: RuntimeError 216s _____________________________ test_qval[1-Hamming] _____________________________ 216s 216s alg = 'Hamming', qval = 1 216s 216s @pytest.mark.external 216s > @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s 216s tests/test_external.py:51: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s left = '0', right = '0', alg = 'Hamming', qval = 1 216s 216s @pytest.mark.external 216s @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s @hypothesis.given( 216s left=hypothesis.strategies.text(min_size=1), 216s right=hypothesis.strategies.text(min_size=1), 216s ) 216s @pytest.mark.parametrize('qval', (None, 1, 2, 3)) 216s def test_qval(left: str, right: str, alg: str, qval: int | None) -> None: 216s for lib in libraries.get_libs(alg): 216s 216s if lib.module_name == 'jellyfish': 216s ascii = set(string.printable) 216s if (set(left) | set(right)) - ascii: 216s continue 216s 216s conditions = lib.conditions or {} 216s internal_func = getattr(textdistance, alg)(external=False, **conditions) 216s external_func = lib.get_function() 216s if external_func is None: 216s > raise RuntimeError('cannot import {}'.format(str(lib))) 216s E RuntimeError: cannot import Levenshtein.hamming 216s E Falsifying example: test_qval( 216s E # The test always failed when commented parts were varied together. 216s E alg='Hamming', 216s E qval=1, 216s E left='0', # or any other generated value 216s E right='0', # or any other generated value 216s E ) 216s 216s tests/test_external.py:69: RuntimeError 216s ___________________________ test_qval[1-Levenshtein] ___________________________ 216s 216s alg = 'Levenshtein', qval = 1 216s 216s @pytest.mark.external 216s > @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s 216s tests/test_external.py:51: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s left = '0', right = '0', alg = 'Levenshtein', qval = 1 216s 216s @pytest.mark.external 216s @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s @hypothesis.given( 216s left=hypothesis.strategies.text(min_size=1), 216s right=hypothesis.strategies.text(min_size=1), 216s ) 216s @pytest.mark.parametrize('qval', (None, 1, 2, 3)) 216s def test_qval(left: str, right: str, alg: str, qval: int | None) -> None: 216s for lib in libraries.get_libs(alg): 216s 216s if lib.module_name == 'jellyfish': 216s ascii = set(string.printable) 216s if (set(left) | set(right)) - ascii: 216s continue 216s 216s conditions = lib.conditions or {} 216s internal_func = getattr(textdistance, alg)(external=False, **conditions) 216s external_func = lib.get_function() 216s if external_func is None: 216s > raise RuntimeError('cannot import {}'.format(str(lib))) 216s E RuntimeError: cannot import Levenshtein.distance 216s E Falsifying example: test_qval( 216s E # The test always failed when commented parts were varied together. 216s E alg='Levenshtein', 216s E qval=1, 216s E left='0', # or any other generated value 216s E right='0', # or any other generated value 216s E ) 216s 216s tests/test_external.py:69: RuntimeError 216s _______________________ test_qval[2-DamerauLevenshtein] ________________________ 216s 216s alg = 'DamerauLevenshtein', qval = 2 216s 216s @pytest.mark.external 216s > @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s 216s tests/test_external.py:51: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s left = '0', right = '0', alg = 'DamerauLevenshtein', qval = 2 216s 216s @pytest.mark.external 216s @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s @hypothesis.given( 216s left=hypothesis.strategies.text(min_size=1), 216s right=hypothesis.strategies.text(min_size=1), 216s ) 216s @pytest.mark.parametrize('qval', (None, 1, 2, 3)) 216s def test_qval(left: str, right: str, alg: str, qval: int | None) -> None: 216s for lib in libraries.get_libs(alg): 216s 216s if lib.module_name == 'jellyfish': 216s ascii = set(string.printable) 216s if (set(left) | set(right)) - ascii: 216s continue 216s 216s conditions = lib.conditions or {} 216s internal_func = getattr(textdistance, alg)(external=False, **conditions) 216s external_func = lib.get_function() 216s if external_func is None: 216s > raise RuntimeError('cannot import {}'.format(str(lib))) 216s E RuntimeError: cannot import pyxdameraulevenshtein.damerau_levenshtein_distance 216s E Falsifying example: test_qval( 216s E # The test always failed when commented parts were varied together. 216s E alg='DamerauLevenshtein', 216s E qval=2, 216s E left='0', # or any other generated value 216s E right='0', # or any other generated value 216s E ) 216s 216s tests/test_external.py:69: RuntimeError 216s _____________________________ test_qval[2-Hamming] _____________________________ 216s 216s alg = 'Hamming', qval = 2 216s 216s @pytest.mark.external 216s > @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s 216s tests/test_external.py:51: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s left = '0', right = '0', alg = 'Hamming', qval = 2 216s 216s @pytest.mark.external 216s @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s @hypothesis.given( 216s left=hypothesis.strategies.text(min_size=1), 216s right=hypothesis.strategies.text(min_size=1), 216s ) 216s @pytest.mark.parametrize('qval', (None, 1, 2, 3)) 216s def test_qval(left: str, right: str, alg: str, qval: int | None) -> None: 216s for lib in libraries.get_libs(alg): 216s 216s if lib.module_name == 'jellyfish': 216s ascii = set(string.printable) 216s if (set(left) | set(right)) - ascii: 216s continue 216s 216s conditions = lib.conditions or {} 216s internal_func = getattr(textdistance, alg)(external=False, **conditions) 216s external_func = lib.get_function() 216s if external_func is None: 216s > raise RuntimeError('cannot import {}'.format(str(lib))) 216s E RuntimeError: cannot import Levenshtein.hamming 216s E Falsifying example: test_qval( 216s E # The test always failed when commented parts were varied together. 216s E alg='Hamming', 216s E qval=2, 216s E left='0', # or any other generated value 216s E right='0', # or any other generated value 216s E ) 216s 216s tests/test_external.py:69: RuntimeError 216s ___________________________ test_qval[2-Levenshtein] ___________________________ 216s 216s alg = 'Levenshtein', qval = 2 216s 216s @pytest.mark.external 216s > @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s 216s tests/test_external.py:51: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s left = '0', right = '0', alg = 'Levenshtein', qval = 2 216s 216s @pytest.mark.external 216s @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s @hypothesis.given( 216s left=hypothesis.strategies.text(min_size=1), 216s right=hypothesis.strategies.text(min_size=1), 216s ) 216s @pytest.mark.parametrize('qval', (None, 1, 2, 3)) 216s def test_qval(left: str, right: str, alg: str, qval: int | None) -> None: 216s for lib in libraries.get_libs(alg): 216s 216s if lib.module_name == 'jellyfish': 216s ascii = set(string.printable) 216s if (set(left) | set(right)) - ascii: 216s continue 216s 216s conditions = lib.conditions or {} 216s internal_func = getattr(textdistance, alg)(external=False, **conditions) 216s external_func = lib.get_function() 216s if external_func is None: 216s > raise RuntimeError('cannot import {}'.format(str(lib))) 216s E RuntimeError: cannot import Levenshtein.distance 216s E Falsifying example: test_qval( 216s E # The test always failed when commented parts were varied together. 216s E alg='Levenshtein', 216s E qval=2, 216s E left='0', # or any other generated value 216s E right='0', # or any other generated value 216s E ) 216s 216s tests/test_external.py:69: RuntimeError 216s _______________________ test_qval[3-DamerauLevenshtein] ________________________ 216s 216s alg = 'DamerauLevenshtein', qval = 3 216s 216s @pytest.mark.external 216s > @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s 216s tests/test_external.py:51: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s left = '0', right = '0', alg = 'DamerauLevenshtein', qval = 3 216s 216s @pytest.mark.external 216s @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s @hypothesis.given( 216s left=hypothesis.strategies.text(min_size=1), 216s right=hypothesis.strategies.text(min_size=1), 216s ) 216s @pytest.mark.parametrize('qval', (None, 1, 2, 3)) 216s def test_qval(left: str, right: str, alg: str, qval: int | None) -> None: 216s for lib in libraries.get_libs(alg): 216s 216s if lib.module_name == 'jellyfish': 216s ascii = set(string.printable) 216s if (set(left) | set(right)) - ascii: 216s continue 216s 216s conditions = lib.conditions or {} 216s internal_func = getattr(textdistance, alg)(external=False, **conditions) 216s external_func = lib.get_function() 216s if external_func is None: 216s > raise RuntimeError('cannot import {}'.format(str(lib))) 216s E RuntimeError: cannot import pyxdameraulevenshtein.damerau_levenshtein_distance 216s E Falsifying example: test_qval( 216s E # The test always failed when commented parts were varied together. 216s E alg='DamerauLevenshtein', 216s E qval=3, 216s E left='0', # or any other generated value 216s E right='0', # or any other generated value 216s E ) 216s 216s tests/test_external.py:69: RuntimeError 216s _____________________________ test_qval[3-Hamming] _____________________________ 216s 216s alg = 'Hamming', qval = 3 216s 216s @pytest.mark.external 216s > @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s 216s tests/test_external.py:51: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s left = '0', right = '0', alg = 'Hamming', qval = 3 216s 216s @pytest.mark.external 216s @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s @hypothesis.given( 216s left=hypothesis.strategies.text(min_size=1), 216s right=hypothesis.strategies.text(min_size=1), 216s ) 216s @pytest.mark.parametrize('qval', (None, 1, 2, 3)) 216s def test_qval(left: str, right: str, alg: str, qval: int | None) -> None: 216s for lib in libraries.get_libs(alg): 216s 216s if lib.module_name == 'jellyfish': 216s ascii = set(string.printable) 216s if (set(left) | set(right)) - ascii: 216s continue 216s 216s conditions = lib.conditions or {} 216s internal_func = getattr(textdistance, alg)(external=False, **conditions) 216s external_func = lib.get_function() 216s if external_func is None: 216s > raise RuntimeError('cannot import {}'.format(str(lib))) 216s E RuntimeError: cannot import Levenshtein.hamming 216s E Falsifying example: test_qval( 216s E # The test always failed when commented parts were varied together. 216s E alg='Hamming', 216s E qval=3, 216s E left='0', # or any other generated value 216s E right='0', # or any other generated value 216s E ) 216s 216s tests/test_external.py:69: RuntimeError 216s ___________________________ test_qval[3-Levenshtein] ___________________________ 216s 216s alg = 'Levenshtein', qval = 3 216s 216s @pytest.mark.external 216s > @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s 216s tests/test_external.py:51: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s left = '0', right = '0', alg = 'Levenshtein', qval = 3 216s 216s @pytest.mark.external 216s @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s @hypothesis.given( 216s left=hypothesis.strategies.text(min_size=1), 216s right=hypothesis.strategies.text(min_size=1), 216s ) 216s @pytest.mark.parametrize('qval', (None, 1, 2, 3)) 216s def test_qval(left: str, right: str, alg: str, qval: int | None) -> None: 216s for lib in libraries.get_libs(alg): 216s 216s if lib.module_name == 'jellyfish': 216s ascii = set(string.printable) 216s if (set(left) | set(right)) - ascii: 216s continue 216s 216s conditions = lib.conditions or {} 216s internal_func = getattr(textdistance, alg)(external=False, **conditions) 216s external_func = lib.get_function() 216s if external_func is None: 216s > raise RuntimeError('cannot import {}'.format(str(lib))) 216s E RuntimeError: cannot import Levenshtein.distance 216s E Falsifying example: test_qval( 216s E # The test always failed when commented parts were varied together. 216s E alg='Levenshtein', 216s E qval=3, 216s E left='0', # or any other generated value 216s E right='0', # or any other generated value 216s E ) 216s 216s tests/test_external.py:69: RuntimeError 216s ___________________ test_list_of_numbers[DamerauLevenshtein] ___________________ 216s 216s alg = 'DamerauLevenshtein' 216s 216s @pytest.mark.external 216s > @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s 216s tests/test_external.py:91: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s left = [], right = [], alg = 'DamerauLevenshtein' 216s 216s @pytest.mark.external 216s @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s @hypothesis.given( 216s left=hypothesis.strategies.lists(hypothesis.strategies.integers()), 216s right=hypothesis.strategies.lists(hypothesis.strategies.integers()), 216s ) 216s def test_list_of_numbers(left, right, alg): 216s for lib in libraries.get_libs(alg): 216s conditions = lib.conditions or {} 216s internal_func = getattr(textdistance, alg)(external=False, **conditions) 216s external_func = lib.get_function() 216s if external_func is None: 216s > raise RuntimeError('cannot import {}'.format(str(lib))) 216s E RuntimeError: cannot import pyxdameraulevenshtein.damerau_levenshtein_distance 216s E Falsifying example: test_list_of_numbers( 216s E # The test always failed when commented parts were varied together. 216s E alg='DamerauLevenshtein', 216s E left=[], # or any other generated value 216s E right=[], # or any other generated value 216s E ) 216s 216s tests/test_external.py:102: RuntimeError 216s ________________________ test_list_of_numbers[Hamming] _________________________ 216s 216s alg = 'Hamming' 216s 216s @pytest.mark.external 216s > @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s 216s tests/test_external.py:91: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s left = [], right = [], alg = 'Hamming' 216s 216s @pytest.mark.external 216s @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s @hypothesis.given( 216s left=hypothesis.strategies.lists(hypothesis.strategies.integers()), 216s right=hypothesis.strategies.lists(hypothesis.strategies.integers()), 216s ) 216s def test_list_of_numbers(left, right, alg): 216s for lib in libraries.get_libs(alg): 216s conditions = lib.conditions or {} 216s internal_func = getattr(textdistance, alg)(external=False, **conditions) 216s external_func = lib.get_function() 216s if external_func is None: 216s > raise RuntimeError('cannot import {}'.format(str(lib))) 216s E RuntimeError: cannot import Levenshtein.hamming 216s E Falsifying example: test_list_of_numbers( 216s E # The test always failed when commented parts were varied together. 216s E alg='Hamming', 216s E left=[], # or any other generated value 216s E right=[], # or any other generated value 216s E ) 216s 216s tests/test_external.py:102: RuntimeError 216s ______________________ test_list_of_numbers[Levenshtein] _______________________ 216s 216s alg = 'Levenshtein' 216s 216s @pytest.mark.external 216s > @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s 216s tests/test_external.py:91: 216s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 216s 216s left = [], right = [], alg = 'Levenshtein' 216s 216s @pytest.mark.external 216s @pytest.mark.parametrize('alg', libraries.get_algorithms()) 216s @hypothesis.given( 216s left=hypothesis.strategies.lists(hypothesis.strategies.integers()), 216s right=hypothesis.strategies.lists(hypothesis.strategies.integers()), 216s ) 216s def test_list_of_numbers(left, right, alg): 216s for lib in libraries.get_libs(alg): 216s conditions = lib.conditions or {} 216s internal_func = getattr(textdistance, alg)(external=False, **conditions) 216s external_func = lib.get_function() 216s if external_func is None: 216s > raise RuntimeError('cannot import {}'.format(str(lib))) 216s E RuntimeError: cannot import Levenshtein.distance 216s E Falsifying example: test_list_of_numbers( 216s E # The test always failed when commented parts were varied together. 216s E alg='Levenshtein', 216s E left=[], # or any other generated value 216s E right=[], # or any other generated value 216s E ) 216s 216s tests/test_external.py:102: RuntimeError 216s =========================== short test summary info ============================ 216s FAILED tests/test_common.py::test_normalization_range[alg21] - ImportError: P... 216s FAILED tests/test_common.py::test_normalization_range[alg22] - ImportError: P... 216s FAILED tests/test_common.py::test_normalization_by_one[alg21] - ImportError: ... 216s FAILED tests/test_common.py::test_normalization_by_one[alg22] - ImportError: ... 216s FAILED tests/test_common.py::test_normalization_same[alg21] - ImportError: Pl... 216s FAILED tests/test_common.py::test_normalization_same[alg22] - ImportError: Pl... 216s FAILED tests/test_common.py::test_normalization_monotonic[alg21] - ImportErro... 216s FAILED tests/test_common.py::test_normalization_monotonic[alg22] - ImportErro... 216s FAILED tests/test_common.py::test_no_common_chars[alg21] - ImportError: Pleas... 216s FAILED tests/test_common.py::test_no_common_chars[alg22] - ImportError: Pleas... 216s FAILED tests/test_common.py::test_empty[alg21] - ImportError: Please, install... 216s FAILED tests/test_common.py::test_empty[alg22] - ImportError: Please, install... 216s FAILED tests/test_common.py::test_unequal_distance[alg21] - ImportError: Plea... 216s FAILED tests/test_edit/test_gotoh.py::test_distance_ident[GATTACA-GCATGCU-0] 216s FAILED tests/test_edit/test_gotoh.py::test_distance_ident_with_gap_05[GATTACA-GCATGCU-0] 216s FAILED tests/test_edit/test_gotoh.py::test_distance_ident_with_gap_05[AGACTAGTTAC-TGACGSTGC-1.5] 216s FAILED tests/test_edit/test_gotoh.py::test_distance_ident_with_gap_05[AGACTAGTTAC-CGAGACGT-1] 216s FAILED tests/test_edit/test_gotoh.py::test_distance_ident_with_gap_5[AGACTAGTTAC-CGAGACGT--15] 216s FAILED tests/test_edit/test_needleman_wunsch.py::test_distance_matrix[AGACTAGTTAC-CGAGACGT-16] 216s FAILED tests/test_edit/test_needleman_wunsch.py::test_distance_ident[GATTACA-GCATGCU-0] 216s FAILED tests/test_edit/test_needleman_wunsch.py::test_distance_ident_with_gap_5[CGATATCAG-TGACGSTGC--5] 216s FAILED tests/test_edit/test_needleman_wunsch.py::test_distance_ident_with_gap_5[AGACTAGTTAC-TGACGSTGC--7] 216s FAILED tests/test_edit/test_needleman_wunsch.py::test_distance_ident_with_gap_5[AGACTAGTTAC-CGAGACGT--15] 216s FAILED tests/test_edit/test_smith_waterman.py::test_distance_matrix[AGACTAGTTAC-CGAGACGT-26] 216s FAILED tests/test_edit/test_smith_waterman.py::test_distance_ident[GATTACA-GCATGCU-0] 216s FAILED tests/test_edit/test_smith_waterman.py::test_distance_ident_with_gap_5[CGATATCAG-TGACGSTGC-0] 216s FAILED tests/test_edit/test_smith_waterman.py::test_distance_ident_with_gap_5[AGACTAGTTAC-TGACGSTGC-1] 216s FAILED tests/test_edit/test_smith_waterman.py::test_distance_ident_with_gap_5[AGACTAGTTAC-CGAGACGT-0] 216s FAILED tests/test_external.py::test_compare[DamerauLevenshtein] - RuntimeErro... 216s FAILED tests/test_external.py::test_compare[Hamming] - RuntimeError: cannot i... 216s FAILED tests/test_external.py::test_compare[Levenshtein] - RuntimeError: cann... 216s FAILED tests/test_external.py::test_qval[None-DamerauLevenshtein] - RuntimeEr... 216s FAILED tests/test_external.py::test_qval[None-Hamming] - RuntimeError: cannot... 216s FAILED tests/test_external.py::test_qval[None-Levenshtein] - RuntimeError: ca... 216s FAILED tests/test_external.py::test_qval[1-DamerauLevenshtein] - RuntimeError... 216s FAILED tests/test_external.py::test_qval[1-Hamming] - RuntimeError: cannot im... 216s FAILED tests/test_external.py::test_qval[1-Levenshtein] - RuntimeError: canno... 216s FAILED tests/test_external.py::test_qval[2-DamerauLevenshtein] - RuntimeError... 216s FAILED tests/test_external.py::test_qval[2-Hamming] - RuntimeError: cannot im... 216s FAILED tests/test_external.py::test_qval[2-Levenshtein] - RuntimeError: canno... 216s FAILED tests/test_external.py::test_qval[3-DamerauLevenshtein] - RuntimeError... 216s FAILED tests/test_external.py::test_qval[3-Hamming] - RuntimeError: cannot im... 216s FAILED tests/test_external.py::test_qval[3-Levenshtein] - RuntimeError: canno... 216s FAILED tests/test_external.py::test_list_of_numbers[DamerauLevenshtein] - Run... 216s FAILED tests/test_external.py::test_list_of_numbers[Hamming] - RuntimeError: ... 216s FAILED tests/test_external.py::test_list_of_numbers[Levenshtein] - RuntimeErr... 216s ================== 46 failed, 384 passed in 113.00s (0:01:53) ================== 216s E: pybuild pybuild:389: test: plugin distutils failed with: exit code=1: cd /tmp/autopkgtest.620UzN/autopkgtest_tmp/build; python3.13 -m pytest tests 216s I: pybuild base:311: cd /tmp/autopkgtest.620UzN/autopkgtest_tmp/build; python3.12 -m pytest tests 216s ============================= test session starts ============================== 216s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 216s rootdir: /tmp/autopkgtest.620UzN/autopkgtest_tmp/build 216s configfile: setup.cfg 216s plugins: typeguard-4.4.1, hypothesis-6.116.0 216s collected 430 items 216s 223s tests/test_common.py ................................................... [ 11%] 228s ........................................................................ [ 28%] 228s ............................................. [ 39%] 228s tests/test_compression/test_arith_ncd.py .... [ 40%] 228s tests/test_compression/test_bwtrle_ncd.py .. [ 40%] 228s tests/test_compression/test_bz2_ncd.py .. [ 40%] 231s tests/test_compression/test_common.py ............................ [ 47%] 231s tests/test_compression/test_entropy_ncd.py ........ [ 49%] 232s tests/test_compression/test_sqrt_ncd.py ....... [ 50%] 232s tests/test_edit/test_damerau_levenshtein.py ............................ [ 57%] 232s .... [ 58%] 232s tests/test_edit/test_editex.py ............ [ 61%] 232s tests/test_edit/test_gotoh.py ..... [ 62%] 232s tests/test_edit/test_hamming.py ...... [ 63%] 232s tests/test_edit/test_jaro.py ........ [ 65%] 232s tests/test_edit/test_jaro_winkler.py ....... [ 67%] 232s tests/test_edit/test_levenshtein.py ...... [ 68%] 232s tests/test_edit/test_matrix.py .......... [ 70%] 232s tests/test_edit/test_mlipns.py ........... [ 73%] 232s tests/test_edit/test_needleman_wunsch.py ..... [ 74%] 232s tests/test_edit/test_smith_waterman.py ..... [ 75%] 232s tests/test_edit/test_strcmp95.py .... [ 76%] 236s tests/test_external.py .............................. [ 83%] 236s tests/test_phonetic/test_editex.py .............................. [ 90%] 236s tests/test_sequence/test_lcsseq.py ........... [ 93%] 236s tests/test_sequence/test_lcsstr.py .......... [ 95%] 236s tests/test_token/test_bag.py .... [ 96%] 236s tests/test_token/test_cosine.py .. [ 96%] 236s tests/test_token/test_jaccard.py ..... [ 98%] 236s tests/test_token/test_monge_elkan.py .. [ 98%] 236s tests/test_token/test_overlap.py ... [ 99%] 236s tests/test_token/test_sorensen.py ... [100%] 236s 236s ============================= 430 passed in 20.19s ============================= 236s pybuild-autopkgtest: error: pybuild --autopkgtest --test-pytest -i python{version} -p "3.13 3.12" returned exit code 13 236s make: *** [/tmp/qEkG9Y40My/run:4: pybuild-autopkgtest] Error 25 236s pybuild-autopkgtest: error: /tmp/qEkG9Y40My/run pybuild-autopkgtest returned exit code 2 237s autopkgtest [23:29:38]: test pybuild-autopkgtest: -----------------------] 237s pybuild-autopkgtest FAIL non-zero exit status 25 237s autopkgtest [23:29:38]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 238s autopkgtest [23:29:39]: @@@@@@@@@@@@@@@@@@@@ summary 238s pybuild-autopkgtest FAIL non-zero exit status 25 250s nova [W] Skipping flock for amd64 250s Creating nova instance adt-plucky-amd64-textdistance-20241114-232541-juju-7f2275-prod-proposed-migration-environment-15-3e02b258-b269-4ee5-8119-37709dc21d21 from image adt/ubuntu-plucky-amd64-server-20241114.img (UUID 79d80331-8736-463c-82c6-8c9e13c0a4ca)...