0s autopkgtest [23:23:47]: starting date and time: 2025-03-15 23:23:47+0000 0s autopkgtest [23:23:47]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [23:23:47]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.gpsj9s0m/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade t-coffee --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@lcy02-9.secgroup --name adt-plucky-amd64-t-coffee-20250315-232346-juju-7f2275-prod-proposed-migration-environment-15-1571d5d5-0602-4408-aa8c-8d681b3c2da6 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 46s autopkgtest [23:24:33]: testbed dpkg architecture: amd64 46s autopkgtest [23:24:33]: testbed apt version: 2.9.31ubuntu1 46s autopkgtest [23:24:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 46s autopkgtest [23:24:33]: testbed release detected to be: None 46s autopkgtest [23:24:33]: updating testbed package index (apt update) 46s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 46s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 46s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 46s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 46s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 46s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 46s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 46s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 47s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 47s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 47s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 47s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 47s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 47s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 47s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 47s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 47s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 47s Fetched 1265 kB in 0s (5169 kB/s) 48s Reading package lists... 48s + lsb_release --codename --short 48s + RELEASE=plucky 48s + cat 48s + [ plucky != trusty ] 48s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 48s Reading package lists... 49s Building dependency tree... 49s Reading state information... 49s Calculating upgrade... 49s Calculating upgrade... 50s The following package was automatically installed and is no longer required: 50s libnl-genl-3-200 50s Use 'sudo apt autoremove' to remove it. 50s The following NEW packages will be installed: 50s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 50s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 50s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 50s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 50s The following packages will be upgraded: 50s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 50s cloud-init cloud-init-base curl dosfstools fwupd gir1.2-girepository-2.0 50s gir1.2-glib-2.0 htop hwdata libapparmor1 libapt-pkg7.0 libaudit-common 50s libaudit1 libbinutils libbrotli1 libcap-ng0 libctf-nobfd0 libctf0 50s libcurl3t64-gnutls libcurl4t64 libestr0 libfwupd3 libgirepository-1.0-1 50s libglib2.0-0t64 libglib2.0-data libgprofng0 libjemalloc2 liblz4-1 liblzma5 50s libmm-glib0 libncurses6 libncursesw6 libnl-3-200 libnl-genl-3-200 50s libnl-route-3-200 libpci3 libpython3-stdlib libpython3.13 50s libpython3.13-minimal libpython3.13-stdlib libselinux1 libsframe1 50s libsqlite3-0 libtinfo6 libxml2 linux-firmware linux-generic 50s linux-headers-generic linux-headers-virtual linux-image-generic 50s linux-image-virtual linux-libc-dev linux-tools-common linux-virtual 50s media-types ncurses-base ncurses-bin ncurses-term pci.ids pciutils 50s pinentry-curses python-apt-common python3 python3-apt python3-cffi-backend 50s python3-dbus python3-gi python3-jinja2 python3-lazr.uri python3-markupsafe 50s python3-minimal python3-systemd python3-yaml python3.13 python3.13-gdbm 50s python3.13-minimal rsync rsyslog strace xz-utils 50s 86 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 50s Need to get 807 MB of archives. 50s After this operation, 326 MB of additional disk space will be used. 50s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 50s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 50s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 50s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 50s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 50s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 50s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 50s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 50s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 50s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 50s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 50s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 50s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 50s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 50s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 50s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 50s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 50s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 50s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 50s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 50s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 50s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 50s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 50s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 50s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 50s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 50s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 50s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 50s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 50s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 50s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 50s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 50s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 50s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 50s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 50s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 50s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 50s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 50s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 50s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 50s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 50s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 50s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 50s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 50s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 50s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 50s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 50s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 50s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 50s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 50s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 50s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 50s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 50s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 50s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 50s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 50s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 50s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 50s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 50s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 50s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 50s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 50s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 50s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 50s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 50s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 50s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 50s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 50s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 50s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 50s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 50s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 50s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 50s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 50s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 50s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 50s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 50s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 55s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 55s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 55s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 56s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 56s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 56s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 56s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 56s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 56s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 57s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 57s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 57s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 57s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 57s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 57s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 57s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 57s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 57s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 57s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 57s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 57s Preconfiguring packages ... 58s Fetched 807 MB in 7s (114 MB/s) 58s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 58s Preparing to unpack .../ncurses-bin_6.5+20250216-2_amd64.deb ... 58s Unpacking ncurses-bin (6.5+20250216-2) over (6.5+20250216-1) ... 59s Setting up ncurses-bin (6.5+20250216-2) ... 59s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 59s Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ... 59s Unpacking ncurses-base (6.5+20250216-2) over (6.5+20250216-1) ... 59s Setting up ncurses-base (6.5+20250216-2) ... 59s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 59s Preparing to unpack .../ncurses-term_6.5+20250216-2_all.deb ... 59s Unpacking ncurses-term (6.5+20250216-2) over (6.5+20250216-1) ... 60s Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ... 60s Unpacking liblz4-1:amd64 (1.10.0-4) over (1.10.0-3) ... 60s Setting up liblz4-1:amd64 (1.10.0-4) ... 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 60s Preparing to unpack .../liblzma5_5.6.4-1_amd64.deb ... 60s Unpacking liblzma5:amd64 (5.6.4-1) over (5.6.3-1) ... 60s Setting up liblzma5:amd64 (5.6.4-1) ... 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 60s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ... 60s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ... 60s Setting up libapt-pkg7.0:amd64 (2.9.33) ... 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 60s Preparing to unpack .../archives/apt_2.9.33_amd64.deb ... 60s Unpacking apt (2.9.33) over (2.9.31ubuntu1) ... 61s Setting up apt (2.9.33) ... 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 62s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 62s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 62s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 62s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 62s Setting up python3-minimal (3.13.2-2) ... 62s (Reading database ... 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Preparing to unpack .../68-python3-systemd_235-1build6_amd64.deb ... 85s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 85s Preparing to unpack .../69-python3.13-gdbm_3.13.2-2_amd64.deb ... 85s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 85s Preparing to unpack .../70-cloud-init_25.1-0ubuntu3_all.deb ... 85s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 85s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 85s Setting up media-types (13.0.0) ... 85s Installing new version of config file /etc/mime.types ... 85s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 85s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 85s Setting up pci.ids (0.0~2025.03.09-1) ... 85s Setting up apt-utils (2.9.33) ... 85s Setting up libdebuginfod-common (0.192-4) ... 85s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 85s Setting up bpftool (7.6.0+6.14.0-10.10) ... 85s Setting up libestr0:amd64 (0.1.11-2) ... 85s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 85s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 85s Setting up dosfstools (4.2-1.2) ... 85s Setting up rsyslog (8.2412.0-2ubuntu2) ... 85s info: The user `syslog' is already a member of `adm'. 87s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 87s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 87s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 87s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 87s Setting up linux-headers-generic (6.14.0-10.10) ... 87s Setting up libjemalloc2:amd64 (5.3.0-3) ... 87s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 87s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 87s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 87s Installing new version of config file /etc/apparmor.d/openvpn ... 88s Reloading AppArmor profiles 91s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 91s No schema files found: doing nothing. 91s Setting up libglib2.0-data (2.84.0-1) ... 91s Setting up libncurses6:amd64 (6.5+20250216-2) ... 91s Setting up strace (6.13+ds-1ubuntu1) ... 91s Setting up xz-utils (5.6.4-1) ... 91s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 91s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 94s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 94s Setting up libpci3:amd64 (1:3.13.0-2) ... 94s Setting up python-apt-common (2.9.9build1) ... 94s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 94s Setting up pnp.ids (0.393-3) ... 94s Setting up libnl-3-200:amd64 (3.7.0-1) ... 94s Setting up python3.13-minimal (3.13.2-2) ... 95s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 95s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 95s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 95s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 95s Setting up rsync (3.4.1+ds1-3) ... 96s rsync.service is a disabled or a static unit not running, not starting it. 96s Setting up python3.13-gdbm (3.13.2-2) ... 96s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 96s Setting up ncurses-term (6.5+20250216-2) ... 96s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 96s Setting up libpython3.13:amd64 (3.13.2-2) ... 96s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 96s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 96s Setting up linux-headers-virtual (6.14.0-10.10) ... 96s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 96s Setting up python3.13 (3.13.2-2) ... 97s Setting up htop (3.4.0-2) ... 97s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 100s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 100s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 100s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 100s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 100s Setting up libfwupd3:amd64 (2.0.6-4) ... 100s Setting up python3 (3.13.2-2) ... 100s Setting up python3-markupsafe (2.1.5-1build4) ... 100s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 103s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 103s Setting up hwdata (0.393-3) ... 103s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 103s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 103s Setting up linux-perf (6.14.0-10.10) ... 103s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 103s Setting up python3-gi (3.50.0-4build1) ... 103s Setting up pciutils (1:3.13.0-2) ... 103s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 103s Setting up curl (8.12.1-3ubuntu1) ... 103s Setting up linux-image-virtual (6.14.0-10.10) ... 103s Setting up linux-tools-common (6.14.0-10.10) ... 103s Setting up fwupd (2.0.6-4) ... 104s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 104s Setting up python3-systemd (235-1build6) ... 105s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 105s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 105s Setting up linux-image-generic (6.14.0-10.10) ... 105s Setting up python3-dbus (1.3.2-5build5) ... 105s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 105s Setting up linux-generic (6.14.0-10.10) ... 105s Setting up python3-apt (2.9.9build1) ... 105s Setting up python3-yaml (6.0.2-1build2) ... 105s Setting up python3-lazr.uri (1.0.6-6) ... 105s Setting up binutils (2.44-3ubuntu1) ... 105s Setting up cloud-init-base (25.1-0ubuntu3) ... 107s Setting up linux-virtual (6.14.0-10.10) ... 107s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 107s Setting up cloud-init (25.1-0ubuntu3) ... 107s Processing triggers for systemd (257.3-1ubuntu3) ... 107s Processing triggers for man-db (2.13.0-1) ... 110s Processing triggers for dbus (1.16.2-1ubuntu1) ... 110s Processing triggers for libc-bin (2.41-1ubuntu1) ... 110s Processing triggers for initramfs-tools (0.146ubuntu1) ... 110s update-initramfs: Generating /boot/initrd.img-6.12.0-16-generic 110s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 126s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 126s /etc/kernel/postinst.d/initramfs-tools: 126s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 126s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 141s /etc/kernel/postinst.d/zz-update-grub: 141s Sourcing file `/etc/default/grub' 141s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 141s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 141s Generating grub configuration file ... 142s Found linux image: /boot/vmlinuz-6.14.0-10-generic 142s Found initrd image: /boot/initrd.img-6.14.0-10-generic 142s Found linux image: /boot/vmlinuz-6.12.0-16-generic 142s Found initrd image: /boot/initrd.img-6.12.0-16-generic 142s Found linux image: /boot/vmlinuz-6.11.0-8-generic 142s Found initrd image: /boot/initrd.img-6.11.0-8-generic 143s Warning: os-prober will not be executed to detect other bootable partitions. 143s Systems on them will not be added to the GRUB boot configuration. 143s Check GRUB_DISABLE_OS_PROBER documentation entry. 143s Adding boot menu entry for UEFI Firmware Settings ... 143s done 143s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 143s + /usr/lib/apt/apt-helper analyze-pattern ?true 143s + + seduname s/\./\\./g -r 143s 143s + running_kernel_pattern=^linux-.*6\.12\.0-16-generic.* 143s + apt list ?obsolete 143s + tail -n+2 143s + cut -d/ -f1 143s + grep -v ^linux-.*6\.12\.0-16-generic.* 145s + obsolete_pkgs=linux-headers-6.11.0-8-generic 145s linux-headers-6.11.0-8 145s linux-headers-6.12.0-16 145s linux-image-6.11.0-8-generic 145s linux-modules-6.11.0-8-generic 145s linux-tools-6.11.0-8-generic 145s linux-tools-6.11.0-8 145s linux-tools-6.12.0-16 145s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-headers-6.12.0-16 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 linux-tools-6.12.0-16 145s Reading package lists... 145s Building dependency tree... 145s Reading state information... 145s Solving dependencies... 146s The following packages will be REMOVED: 146s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 146s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 146s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 146s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 146s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 146s linux-tools-6.12.0-16-generic* 146s 0 upgraded, 0 newly installed, 15 to remove and 5 not upgraded. 146s After this operation, 371 MB disk space will be freed. 146s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 146s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 146s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 146s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 146s Removing libpython3.12t64:amd64 (3.12.9-1) ... 146s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 146s Removing libnsl2:amd64 (1.3.0-3build3) ... 146s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 146s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 147s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 150s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 151s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 154s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 154s /etc/kernel/postrm.d/initramfs-tools: 154s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 155s /etc/kernel/postrm.d/zz-update-grub: 155s Sourcing file `/etc/default/grub' 155s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 155s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 155s Generating grub configuration file ... 155s Found linux image: /boot/vmlinuz-6.14.0-10-generic 155s Found initrd image: /boot/initrd.img-6.14.0-10-generic 156s Found linux image: /boot/vmlinuz-6.12.0-16-generic 156s Found initrd image: /boot/initrd.img-6.12.0-16-generic 156s Warning: os-prober will not be executed to detect other bootable partitions. 156s Systems on them will not be added to the GRUB boot configuration. 156s Check GRUB_DISABLE_OS_PROBER documentation entry. 156s Adding boot menu entry for UEFI Firmware Settings ... 156s done 156s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 156s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 156s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 156s Processing triggers for libc-bin (2.41-1ubuntu1) ... 156s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84830 files and directories currently installed.) 156s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 157s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 157s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 157s + grep -q trusty /etc/lsb-release 157s + [ ! -d /usr/share/doc/unattended-upgrades ] 157s + [ ! -d /usr/share/doc/lxd ] 157s + [ ! -d /usr/share/doc/lxd-client ] 157s + [ ! -d /usr/share/doc/snapd ] 157s + type iptables 157s + cat 157s + chmod 755 /etc/rc.local 157s + . /etc/rc.local 157s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 157s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 157s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 157s + uname -m 157s + [ x86_64 = ppc64le ] 157s + [ -d /run/systemd/system ] 157s + systemd-detect-virt --quiet --vm 157s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 157s + cat 157s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 157s + echo COMPRESS=lz4 157s autopkgtest [23:26:24]: upgrading testbed (apt dist-upgrade and autopurge) 157s Reading package lists... 157s Building dependency tree... 157s Reading state information... 158s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 158s Starting 2 pkgProblemResolver with broken count: 0 158s Done 159s Entering ResolveByKeep 159s 159s Calculating upgrade... 159s The following packages will be upgraded: 159s libc-bin libc-dev-bin libc6 libc6-dev locales 159s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 159s Need to get 10.5 MB of archives. 159s After this operation, 1024 B of additional disk space will be used. 159s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 160s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 160s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 160s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 160s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 160s Preconfiguring packages ... 160s Fetched 10.5 MB in 1s (13.0 MB/s) 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 161s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 161s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 161s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 161s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 161s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 161s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 161s Setting up libc6:amd64 (2.41-1ubuntu2) ... 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 161s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 161s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 162s Setting up libc-bin (2.41-1ubuntu2) ... 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 162s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 162s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 162s Setting up locales (2.41-1ubuntu2) ... 163s Generating locales (this might take a while)... 165s en_US.UTF-8... done 165s Generation complete. 165s Setting up libc-dev-bin (2.41-1ubuntu2) ... 165s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 165s Processing triggers for man-db (2.13.0-1) ... 165s Processing triggers for systemd (257.3-1ubuntu3) ... 166s Reading package lists... 167s Building dependency tree... 167s Reading state information... 167s Starting pkgProblemResolver with broken count: 0 167s Starting 2 pkgProblemResolver with broken count: 0 167s Done 168s Solving dependencies... 168s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 168s autopkgtest [23:26:35]: rebooting testbed after setup commands that affected boot 172s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 192s autopkgtest [23:26:59]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 193s autopkgtest [23:27:00]: @@@@@@@@@@@@@@@@@@@@ apt-source t-coffee 195s Get:1 http://ftpmaster.internal/ubuntu plucky/universe t-coffee 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 (dsc) [2391 B] 195s Get:2 http://ftpmaster.internal/ubuntu plucky/universe t-coffee 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 (tar) [3230 kB] 195s Get:3 http://ftpmaster.internal/ubuntu plucky/universe t-coffee 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 (diff) [18.3 kB] 195s gpgv: Signature made Fri Nov 25 10:17:33 2022 UTC 195s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 195s gpgv: issuer "tille@debian.org" 195s gpgv: Can't check signature: No public key 195s dpkg-source: warning: cannot verify inline signature for ./t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1.dsc: no acceptable signature found 196s autopkgtest [23:27:03]: testing package t-coffee version 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 196s autopkgtest [23:27:03]: build not needed 196s autopkgtest [23:27:03]: test run-unit-test: preparing testbed 196s Reading package lists... 197s Building dependency tree... 197s Reading state information... 197s Starting pkgProblemResolver with broken count: 0 197s Starting 2 pkgProblemResolver with broken count: 0 197s Done 198s The following NEW packages will be installed: 198s t-coffee t-coffee-examples 198s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 198s Need to get 3582 kB of archives. 198s After this operation, 8173 kB of additional disk space will be used. 198s Get:1 http://ftpmaster.internal/ubuntu plucky/universe amd64 t-coffee amd64 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 [929 kB] 198s Get:2 http://ftpmaster.internal/ubuntu plucky/universe amd64 t-coffee-examples all 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 [2653 kB] 198s Fetched 3582 kB in 0s (29.9 MB/s) 198s Selecting previously unselected package t-coffee. 198s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 198s Preparing to unpack .../t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1_amd64.deb ... 198s Unpacking t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... 199s Selecting previously unselected package t-coffee-examples. 199s Preparing to unpack .../t-coffee-examples_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1_all.deb ... 199s Unpacking t-coffee-examples (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... 199s Setting up t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... 199s Setting up t-coffee-examples (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... 199s Processing triggers for man-db (2.13.0-1) ... 200s autopkgtest [23:27:07]: test run-unit-test: [----------------------- 201s 201s PROGRAM: T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 201s -full_log S [0] 201s -genepred_score S [0] nsd 201s -run_name S [0] 201s -mem_mode S [0] mem 201s -extend D [1] 1 201s -extend_mode S [0] very_fast_triplet 201s -max_n_pair D [0] 10 201s -seq_name_for_quadruplet S [0] all 201s -compact S [0] default 201s -clean S [0] no 201s -do_self FL [0] 0 201s -do_normalise D [0] 1000 201s -template_file S [0] 201s -setenv S [0] 0 201s -export S [0] 0 201s -template_mode S [0] 201s -flip D [0] 0 201s -remove_template_file D [0] 0 201s -profile_template_file S [0] 201s -in S [0] 201s -seq S [1] sample_rnaseq1.fasta 201s -aln S [0] 201s -method_limits S [0] 201s -method S [0] 201s -lib S [0] 201s -profile S [0] 201s -profile1 S [0] 201s -profile2 S [0] 201s -pdb S [0] 201s -relax_lib D [0] 1 201s -filter_lib D [0] 0 201s -shrink_lib D [0] 0 201s -out_lib W_F [0] no 201s -out_lib_mode S [0] primary 201s -lib_only D [0] 0 201s -outseqweight W_F [0] no 201s -seq_source S [0] ANY 201s -cosmetic_penalty D [0] 0 201s -gapopen D [0] 0 201s -gapext D [0] 0 201s -fgapopen D [0] 0 201s -fgapext D [0] 0 201s -nomatch D [0] 0 201s -newtree W_F [0] default 201s -tree W_F [0] NO 201s -usetree R_F [0] 201s -tree_mode S [0] nj 201s -distance_matrix_mode S [0] ktup 201s -distance_matrix_sim_mode S [0] idmat_sim1 201s -quicktree FL [0] 0 201s -outfile W_F [0] default 201s -maximise FL [1] 1 201s -output S [0] aln html 201s -len D [0] 0 201s -infile R_F [0] 201s -matrix S [0] default 201s -tg_mode D [0] 1 201s -profile_mode S [0] cw_profile_profile 201s -profile_comparison S [0] profile 201s -dp_mode S [0] linked_pair_wise 201s -ktuple D [0] 1 201s -ndiag D [0] 0 201s -diag_threshold D [0] 0 201s -diag_mode D [0] 0 201s -sim_matrix S [0] vasiliky 201s -transform S [0] 201s -extend_seq FL [0] 0 201s -outorder S [0] input 201s -inorder S [0] aligned 201s -seqnos S [0] off 201s -case S [0] keep 201s -cpu D [0] 0 201s -ulimit D [0] -1 201s -maxnseq D [0] -1 201s -maxlen D [0] -1 201s -sample_dp D [0] 0 201s -weight S [0] default 201s -seq_weight S [0] no 201s -align FL [1] 1 201s -mocca FL [0] 0 201s -domain FL [0] 0 201s -start D [0] 0 201s -len D [0] 0 201s -scale D [0] 0 201s -mocca_interactive FL [0] 0 201s -method_evaluate_mode S [0] default 201s -color_mode S [0] new 201s -aln_line_length D [0] 0 201s -evaluate_mode S [0] triplet 201s -get_type FL [0] 0 201s -clean_aln D [0] 0 201s -clean_threshold D [1] 1 201s -clean_iteration D [1] 1 201s -clean_evaluate_mode S [0] t_coffee_fast 201s -extend_matrix FL [0] 0 201s -prot_min_sim D [40] 40 201s -prot_max_sim D [90] 90 201s -prot_trim D [20] 20 201s -prot_min_cov D [40] 40 201s -pdb_type S [0] d 201s -pdb_min_sim D [35] 35 201s -pdb_max_sim D [100] 100 201s -pdb_min_cov D [50] 50 201s -pdb_blast_server W_F [0] EBI 201s -blast W_F [0] 201s -blast_server W_F [0] EBI 201s -pdb_db W_F [0] pdb 201s -protein_db W_F [0] uniref50 201s -method_log W_F [0] no 201s -struc_to_use S [0] 201s -cache W_F [0] use 201s -print_cache FL [0] 0 201s -align_pdb_param_file W_F [0] no 201s -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble 201s -external_aligner S [0] NO 201s -msa_mode S [0] tree 201s -et_mode S [0] et 201s -master S [0] no 201s -blast_nseq D [0] 0 201s -lalign_n_top D [0] 10 201s -iterate D [0] 0 201s -trim D [0] 0 201s -split D [0] 0 201s -trimfile S [0] default 201s -split D [0] 0 201s -split_nseq_thres D [0] 0 201s -split_score_thres D [0] 0 201s -check_pdb_status D [0] 0 201s -clean_seq_name D [0] 0 201s -seq_to_keep S [0] 201s -dpa_master_aln S [0] 201s -dpa_maxnseq D [0] 0 201s -dpa_min_score1 D [0] 201s -dpa_min_score2 D [0] 201s -dpa_keep_tmpfile FL [0] 0 201s -dpa_debug D [0] 0 201s -multi_core S [0] templates_jobs_relax_msa_evaluate 201s -n_core D [0] 1 201s -thread D [0] 1 201s -max_n_proc D [0] 0 201s -lib_list S [0] 201s -prune_lib_mode S [0] 5 201s -tip S [0] none 201s -rna_lib S [0] 201s -no_warning D [0] 0 201s -run_local_script D [0] 0 201s -proxy S [0] unset 201s -email S [0] 201s -clean_overaln D [0] 0 201s -overaln_param S [0] 201s -overaln_mode S [0] 201s -overaln_model S [0] 201s -overaln_threshold D [0] 0 201s -overaln_target D [0] 0 201s -overaln_P1 D [0] 0 201s -overaln_P2 D [0] 0 201s -overaln_P3 D [0] 0 201s -overaln_P4 D [0] 0 201s -exon_boundaries S [0] 201s -display D [0] 100 201s 201s INPUT FILES 201s Input File (S) sample_rnaseq1.fasta Format fasta_seq 201s Input File (M) proba_pair 201s 201s Identify Master Sequences [no]: 201s 201s Master Sequences Identified 201s INPUT SEQUENCES: 5 SEQUENCES [RNA] 201s Input File sample_rnaseq1.fasta Seq AC000104.1-17376_17496 Length 121 type RNA Struct Unchecked 201s Input File sample_rnaseq1.fasta Seq AC068303.10-12902_12788 Length 115 type RNA Struct Unchecked 201s Input File sample_rnaseq1.fasta Seq AC097725.2-33800_33915 Length 116 type RNA Struct Unchecked 201s Input File sample_rnaseq1.fasta Seq AL023594.2-7651_7766 Length 116 type RNA Struct Unchecked 201s Input File sample_rnaseq1.fasta Seq X15934.1-3_121 Length 119 type RNA Struct Unchecked 201s 201s Multi Core Mode: 1 processors: 201s 201s --- Process Method/Library/Aln Ssample_rnaseq1.fasta 201s xxx Retrieved Ssample_rnaseq1.fasta 201s --- Process Method/Library/Aln Mproba_pair 201s xxx Retrieved Mproba_pair 201s 201s All Methods Retrieved 201s 201s MANUAL PENALTIES: gapopen=0 gapext=0 201s 201s Library Total Size: [7026] 201s 201s Library Relaxation: Multi_proc [1] 201s 201s ! [Relax Library][TOT= 5][ 0 %] ! [Relax Library][TOT= 5][ 40 %] ! [Relax Library][TOT= 5][ 60 %] ! [Relax Library][TOT= 5][ 80 %] ! [Relax Library][TOT= 5][100 %] 202s 202s Relaxation Summary: [7026]--->[6316] 202s 202s 202s 202s UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1 202s 202s MAKE GUIDE TREE 202s [MODE=nj][DONE] 202s 202s PROGRESSIVE_ALIGNMENT [Tree Based] 202s Group 1: AC000104.1-17376_17496 202s Group 2: AC068303.10-12902_12788 202s Group 3: AC097725.2-33800_33915 202s Group 4: AL023594.2-7651_7766 202s Group 5: X15934.1-3_121 202s 202s #Single Thread 202s 202s Group 6: [Group 5 ( 1 seq)] with [Group 1 ( 1 seq)]-->[Len= 122][PID:1525]#Single Thread 202s 202s Group 7: [Group 3 ( 1 seq)] with [Group 2 ( 1 seq)]-->[Len= 120][PID:1525]#Single Thread 202s 202s Group 8: [Group 7 ( 2 seq)] with [Group 6 ( 2 seq)]-->[Len= 126][PID:1525]#Single Thread 202s 202s Group 9: [Group 4 ( 1 seq)] with [Group 8 ( 4 seq)]-->[Len= 129][PID:1525] 202s 202s 202s ! [Final Evaluation][TOT= 129][ 0 %] ! [Final Evaluation][TOT= 129][ 1 %] ! [Final Evaluation][TOT= 129][ 2 %] ! [Final Evaluation][TOT= 129][ 3 %] ! [Final Evaluation][TOT= 129][ 4 %] ! [Final Evaluation][TOT= 129][ 5 %] ! [Final Evaluation][TOT= 129][ 6 %] ! [Final Evaluation][TOT= 129][ 7 %] ! [Final Evaluation][TOT= 129][ 8 %] ! [Final Evaluation][TOT= 129][ 9 %] ! [Final Evaluation][TOT= 129][ 10 %] ! [Final Evaluation][TOT= 129][ 11 %] ! [Final Evaluation][TOT= 129][ 12 %] ! [Final Evaluation][TOT= 129][ 13 %] ! [Final Evaluation][TOT= 129][ 14 %] ! [Final Evaluation][TOT= 129][ 15 %] ! [Final Evaluation][TOT= 129][ 16 %] ! [Final Evaluation][TOT= 129][ 17 %] ! [Final Evaluation][TOT= 129][ 18 %] ! [Final Evaluation][TOT= 129][ 19 %] ! [Final Evaluation][TOT= 129][ 20 %] ! [Final Evaluation][TOT= 129][ 21 %] ! [Final Evaluation][TOT= 129][ 22 %] ! [Final Evaluation][TOT= 129][ 23 %] ! [Final Evaluation][TOT= 129][ 24 %] ! [Final Evaluation][TOT= 129][ 25 %] ! [Final Evaluation][TOT= 129][ 26 %] ! [Final Evaluation][TOT= 129][ 27 %] ! [Final Evaluation][TOT= 129][ 28 %] ! [Final Evaluation][TOT= 129][ 29 %] ! [Final Evaluation][TOT= 129][ 30 %] ! [Final Evaluation][TOT= 129][ 31 %] ! [Final Evaluation][TOT= 129][ 32 %] ! [Final Evaluation][TOT= 129][ 33 %] ! [Final Evaluation][TOT= 129][ 34 %] ! [Final Evaluation][TOT= 129][ 35 %] ! [Final Evaluation][TOT= 129][ 36 %] ! [Final Evaluation][TOT= 129][ 37 %] ! [Final Evaluation][TOT= 129][ 38 %] ! [Final Evaluation][TOT= 129][ 39 %] ! [Final Evaluation][TOT= 129][ 40 %] ! [Final Evaluation][TOT= 129][ 41 %] ! [Final Evaluation][TOT= 129][ 42 %] ! [Final Evaluation][TOT= 129][ 43 %] ! [Final Evaluation][TOT= 129][ 44 %] ! [Final Evaluation][TOT= 129][ 45 %] ! [Final Evaluation][TOT= 129][ 46 %] ! [Final Evaluation][TOT= 129][ 47 %] ! [Final Evaluation][TOT= 129][ 48 %] ! [Final Evaluation][TOT= 129][ 49 %] ! [Final Evaluation][TOT= 129][ 50 %] ! [Final Evaluation][TOT= 129][ 51 %] ! [Final Evaluation][TOT= 129][ 52 %] ! [Final Evaluation][TOT= 129][ 53 %] ! [Final Evaluation][TOT= 129][ 54 %] ! [Final Evaluation][TOT= 129][ 55 %] ! [Final Evaluation][TOT= 129][ 56 %] ! [Final Evaluation][TOT= 129][ 57 %] ! [Final Evaluation][TOT= 129][ 58 %] ! [Final Evaluation][TOT= 129][ 59 %] ! [Final Evaluation][TOT= 129][ 60 %] ! [Final Evaluation][TOT= 129][ 61 %] ! [Final Evaluation][TOT= 129][ 62 %] ! [Final Evaluation][TOT= 129][ 63 %] ! [Final Evaluation][TOT= 129][ 64 %] ! [Final Evaluation][TOT= 129][ 65 %] ! [Final Evaluation][TOT= 129][ 66 %] ! [Final Evaluation][TOT= 129][ 67 %] ! [Final Evaluation][TOT= 129][ 68 %] ! [Final Evaluation][TOT= 129][ 69 %] ! [Final Evaluation][TOT= 129][ 70 %] ! [Final Evaluation][TOT= 129][ 71 %] ! [Final Evaluation][TOT= 129][ 72 %] ! [Final Evaluation][TOT= 129][ 73 %] ! [Final Evaluation][TOT= 129][ 74 %] ! [Final Evaluation][TOT= 129][ 75 %] ! [Final Evaluation][TOT= 129][ 76 %] ! [Final Evaluation][TOT= 129][ 77 %] ! [Final Evaluation][TOT= 129][ 78 %] ! [Final Evaluation][TOT= 129][ 79 %] ! [Final Evaluation][TOT= 129][ 80 %] ! [Final Evaluation][TOT= 129][ 81 %] ! [Final Evaluation][TOT= 129][ 82 %] ! [Final Evaluation][TOT= 129][ 83 %] ! [Final Evaluation][TOT= 129][ 84 %] ! [Final Evaluation][TOT= 129][ 85 %] ! [Final Evaluation][TOT= 129][ 86 %] ! [Final Evaluation][TOT= 129][ 87 %] ! [Final Evaluation][TOT= 129][ 88 %] ! [Final Evaluation][TOT= 129][ 89 %] ! [Final Evaluation][TOT= 129][ 90 %] ! [Final Evaluation][TOT= 129][ 91 %] ! [Final Evaluation][TOT= 129][ 92 %] ! [Final Evaluation][TOT= 129][ 93 %] ! [Final Evaluation][TOT= 129][ 94 %] ! [Final Evaluation][TOT= 129][ 95 %] ! [Final Evaluation][TOT= 129][ 96 %] ! [Final Evaluation][TOT= 129][ 97 %] ! [Final Evaluation][TOT= 129][ 98 %] ! [Final Evaluation][TOT= 129][ 99 %] ! [Final Evaluation][TOT= 129][100 %] 202s 202s 202s 202s OUTPUT RESULTS 202s #### File Type= GUIDE_TREE Format= newick Name= sample_rnaseq1.dnd 202s #### File Type= MSA Format= aln Name= sample_rnaseq1.aln 202s #### File Type= MSA Format= html Name= sample_rnaseq1.html 202s 202s # Command Line: t_coffee sample_rnaseq1.fasta [PROGRAM:T-COFFEE] 202s # T-COFFEE Memory Usage: Current= 389.466 Mb, Max= 405.465 Mb 202s # Results Produced with T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 202s # T-COFFEE is available from http://www.tcoffee.org 202s # Register on: https://groups.google.com/group/tcoffee/ 202s #Single Thread 202s CLUSTAL FORMAT for T-COFFEE Version_13.41.0.28bdc39 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=55, Nseq=5, Len=129 202s 202s AC068303.10-12902_12788 AACUCUUGUUUCUCUUCAG-----AUCAUGUAAAUCUUUCGCCUUUUAUU 202s AC097725.2-33800_33915 A-CUCUGGUUUCUCUUCAAU---UGUCGAAUAAAUCUUUCGCCUUUUACU 202s X15934.1-3_121 A-GCCGUGUG-AUGAUGACA---UAGCGAACUAUUCUUUCGCCUUUUACU 202s AC000104.1-17376_17496 A-GCCAUGUG-GUGAGCACA---UAGCGAACUAUUCUUUCGCCUUUUACU 202s AL023594.2-7651_7766 G-UCAAAGCA-CUUUGCAAAAGCUAACGUAUCUGUUUCUUGCCUUUUACC 202s * * * * * * * ******** 202s 202s AC068303.10-12902_12788 AAAGAUUUCCAUGGGGAGGAACA--GUUAUGAGUCUUUAUCCAAUUUCU- 202s AC097725.2-33800_33915 AAAGAUUUCCGUGGAGAGGAACACUCUAAUGAGUCUAA-AAUAAUUUUUA 202s X15934.1-3_121 AAAGAAUACCGUGUCA-GCGUCACAAUUAGCGGCAUAC-GCUAGUUUUUG 202s AC000104.1-17376_17496 AAAGAAUACCGUGUGC-UCUCCACGCUAAGUGGCAUAC-GCCUAUUUUUG 202s AL023594.2-7651_7766 AGAAACAGCCGUUUGU-AAGGUGUGCUAAUUUGACUGU--AUAGUUUUUG 202s * * * ** * * * * * *** * 202s 202s AC068303.10-12902_12788 GAGG-CCUCGU-GUUU--CACCA--GGCU 202s AC097725.2-33800_33915 GUAG-UGCCCU-G--U--CGCAA--GACU 202s X15934.1-3_121 GAAGAGUUCUCAAUUU--UGAGG-GCUCU 202s AC000104.1-17376_17496 GAGG-GUUCCCACUUUACUGUGGGUCCCA 202s AL023594.2-7651_7766 UAA--UCUUUU-U-CU--UGAAA--CAUU 202s * 202s 202s 202s 203s 203s PROGRAM: T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 203s -full_log S [0] 203s -genepred_score S [0] nsd 203s -run_name S [0] 203s -mem_mode S [0] mem 203s -extend D [1] 1 203s -extend_mode S [1] matrix 203s -max_n_pair D [0] 10 203s -seq_name_for_quadruplet S [0] all 203s -compact S [0] default 203s -clean S [0] no 203s -do_self FL [0] 0 203s -do_normalise D [0] 1000 203s -template_file S [0] 203s -setenv S [0] 0 203s -export S [0] 0 203s -template_mode S [0] 203s -flip D [0] 0 203s -remove_template_file D [0] 0 203s -profile_template_file S [0] 203s -in S [1] Xblosum62mt 203s -seq S [1] sample_rnaseq1.fasta 203s -aln S [0] 203s -method_limits S [0] 203s -method S [0] 203s -lib S [0] 203s -profile S [0] 203s -profile1 S [0] 203s -profile2 S [0] 203s -pdb S [0] 203s -relax_lib D [0] 1 203s -filter_lib D [0] 0 203s -shrink_lib D [0] 0 203s -out_lib W_F [0] no 203s -out_lib_mode S [0] primary 203s -lib_only D [0] 0 203s -outseqweight W_F [0] no 203s -seq_source S [0] ANY 203s -cosmetic_penalty D [0] 0 203s -gapopen D [1] -25 203s -gapext D [1] -1 203s -fgapopen D [0] 0 203s -fgapext D [0] 0 203s -nomatch D [0] 0 203s -newtree W_F [0] default 203s -tree W_F [0] NO 203s -usetree R_F [0] 203s -tree_mode S [0] nj 203s -distance_matrix_mode S [1] ktup 203s -distance_matrix_sim_mode S [0] idmat_sim1 203s -quicktree FL [0] 0 203s -outfile W_F [0] default 203s -maximise FL [1] 1 203s -output S [0] aln html 203s -len D [0] 0 203s -infile R_F [0] 203s -matrix S [0] default 203s -tg_mode D [0] 1 203s -profile_mode S [0] cw_profile_profile 203s -profile_comparison S [0] profile 203s -dp_mode S [1] gotoh_pair_wise_lgp 203s -ktuple D [0] 1 203s -ndiag D [0] 0 203s -diag_threshold D [0] 0 203s -diag_mode D [0] 0 203s -sim_matrix S [0] vasiliky 203s -transform S [0] 203s -extend_seq FL [0] 0 203s -outorder S [0] input 203s -inorder S [0] aligned 203s -seqnos S [0] off 203s -case S [0] keep 203s -cpu D [0] 0 203s -ulimit D [0] -1 203s -maxnseq D [1] 10000 203s -maxlen D [0] -1 203s -sample_dp D [0] 0 203s -weight S [0] default 203s -seq_weight S [0] no 203s -align FL [1] 1 203s -mocca FL [0] 0 203s -domain FL [0] 0 203s -start D [0] 0 203s -len D [0] 0 203s -scale D [0] 0 203s -mocca_interactive FL [0] 0 203s -method_evaluate_mode S [0] default 203s -color_mode S [0] new 203s -aln_line_length D [0] 0 203s -evaluate_mode S [0] triplet 203s -get_type FL [0] 0 203s -clean_aln D [0] 0 203s -clean_threshold D [1] 1 203s -clean_iteration D [1] 1 203s -clean_evaluate_mode S [0] t_coffee_fast 203s -extend_matrix FL [0] 0 203s -prot_min_sim D [40] 40 203s -prot_max_sim D [90] 90 203s -prot_trim D [20] 20 203s -prot_min_cov D [40] 40 203s -pdb_type S [0] d 203s -pdb_min_sim D [35] 35 203s -pdb_max_sim D [100] 100 203s -pdb_min_cov D [50] 50 203s -pdb_blast_server W_F [0] EBI 203s -blast W_F [0] 203s -blast_server W_F [0] EBI 203s -pdb_db W_F [0] pdb 203s -protein_db W_F [0] uniref50 203s -method_log W_F [0] no 203s -struc_to_use S [0] 203s -cache W_F [0] use 203s -print_cache FL [0] 0 203s -align_pdb_param_file W_F [0] no 203s -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble 203s -external_aligner S [0] NO 203s -msa_mode S [0] tree 203s -et_mode S [0] et 203s -master S [0] no 203s -blast_nseq D [0] 0 203s -lalign_n_top D [0] 10 203s -iterate D [1] 0 203s -trim D [0] 0 203s -split D [0] 0 203s -trimfile S [0] default 203s -split D [0] 0 203s -split_nseq_thres D [0] 0 203s -split_score_thres D [0] 0 203s -check_pdb_status D [0] 0 203s -clean_seq_name D [0] 0 203s -seq_to_keep S [0] 203s -dpa_master_aln S [0] 203s -dpa_maxnseq D [1] 0 203s -dpa_min_score1 D [0] 203s -dpa_min_score2 D [0] 203s -dpa_keep_tmpfile FL [0] 0 203s -dpa_debug D [0] 0 203s -multi_core S [0] templates_jobs_relax_msa_evaluate 203s -n_core D [0] 1 203s -thread D [0] 1 203s -max_n_proc D [0] 0 203s -lib_list S [0] 203s -prune_lib_mode S [0] 5 203s -tip S [0] none 203s -rna_lib S [0] 203s -no_warning D [0] 0 203s -run_local_script D [0] 0 203s -proxy S [0] unset 203s -email S [0] 203s -clean_overaln D [0] 0 203s -overaln_param S [0] 203s -overaln_mode S [0] 203s -overaln_model S [0] 203s -overaln_threshold D [0] 0 203s -overaln_target D [0] 0 203s -overaln_P1 D [0] 0 203s -overaln_P2 D [0] 0 203s -overaln_P3 D [0] 0 203s -overaln_P4 D [0] 0 203s -exon_boundaries S [0] 203s -display D [0] 100 203s 203s INPUT FILES 203s Input File (X) blosum62mt 203s Input File (S) sample_rnaseq1.fasta Format fasta_seq 203s Input File (M) proba_pair 203s 203s Identify Master Sequences [no]: 203s 203s Master Sequences Identified 203s INPUT SEQUENCES: 5 SEQUENCES [RNA] 203s Input File sample_rnaseq1.fasta Seq AC000104.1-17376_17496 Length 121 type RNA Struct Unchecked 203s Input File sample_rnaseq1.fasta Seq AC068303.10-12902_12788 Length 115 type RNA Struct Unchecked 203s Input File sample_rnaseq1.fasta Seq AC097725.2-33800_33915 Length 116 type RNA Struct Unchecked 203s Input File sample_rnaseq1.fasta Seq AL023594.2-7651_7766 Length 116 type RNA Struct Unchecked 203s Input File sample_rnaseq1.fasta Seq X15934.1-3_121 Length 119 type RNA Struct Unchecked 203s 203s blosum62mt [matrix] 203s 203s MANUAL PENALTIES: gapopen=-25 gapext=-1 203s 203s Library Total Size: [0] 203s 203s 203s 203s UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1 203s 203s MAKE GUIDE TREE 203s [MODE=nj][DONE] 203s 203s PROGRESSIVE_ALIGNMENT [Tree Based] 203s Group 1: AC000104.1-17376_17496 203s Group 2: AC068303.10-12902_12788 203s Group 3: AC097725.2-33800_33915 203s Group 4: AL023594.2-7651_7766 203s Group 5: X15934.1-3_121 203s 203s 203s Group 6: [Group 5 ( 1 seq)] with [Group 1 ( 1 seq)]-->[Len= 123][PID:1564] 203s Group 7: [Group 3 ( 1 seq)] with [Group 2 ( 1 seq)]-->[Len= 121][PID:1564] 203s Group 8: [Group 7 ( 2 seq)] with [Group 6 ( 2 seq)]-->[Len= 126][PID:1564] 203s Group 9: [Group 4 ( 1 seq)] with [Group 8 ( 4 seq)]-->[Len= 131][PID:1564] 203s 203s 203s 203s OUTPUT RESULTS 203s #### File Type= GUIDE_TREE Format= newick Name= sample_rnaseq1.dnd 203s #### File Type= MSA Format= aln Name= sample_rnaseq1.aln 203s #### File Type= MSA Format= html Name= sample_rnaseq1.html 203s 203s # Command Line: t_coffee sample_rnaseq1.fasta -mode quickaln [PROGRAM:T-COFFEE] 203s # T-COFFEE Memory Usage: Current= 406.848 Mb, Max= 408.019 Mb 203s # Results Produced with T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 203s # T-COFFEE is available from http://www.tcoffee.org 203s # Register on: https://groups.google.com/group/tcoffee/ 203s #Single Thread 203s CLUSTAL FORMAT for T-COFFEE Version_13.41.0.28bdc39 [http://www.tcoffee.org] [MODE: quickaln ], CPU=0.00 sec, SCORE=3094, Nseq=5, Len=131 203s 203s AC068303.10-12902_12788 AACUCUUGUUUCUCUUCAG--AUCAUGUAAAUC--UUUC--GCCUUUUAU 203s AC097725.2-33800_33915 -ACUCUGGUUUCUCUUCAAUUGUCGAAUAAAUC--UUUC--GCCUUUUAC 203s X15934.1-3_121 AGC-CGUGUGA-UGAUGACAUAGCGAACUAUUC--UUUC--GCCUUUUAC 203s AC000104.1-17376_17496 AGC-CAUGUGG-UGAGCACAUAGCGAACUAUUC--UUUC--GCCUUUUAC 203s AL023594.2-7651_7766 -G-UCAAAGCACUUUGCAAA-AGCUAACGUAUCUGUUUCUUGCCUUUUAC 203s * * * * ** **** ******** 203s 203s AC068303.10-12902_12788 UAAAGAUUUCCAUGGG-GAGGAACA--GUUAUGAGUCUUUAUCCAAUUUC 203s AC097725.2-33800_33915 UAAAGAUUUCCGUGGA-GAGGAACACUCUAAUGAGUCUAAAAUAAUUUUU 203s X15934.1-3_121 UAAAGAAUACCGUGU--CAGCGUCACAAUUA-GCGGCAUACGCUAGUUUU 203s AC000104.1-17376_17496 UAAAGAAUACCGUGUG-CU-CUCCACGCUAA-GUGGCAUACGCCUAUUUU 203s AL023594.2-7651_7766 CAGAAACAGCCGUUUGUAAGGUGUGC--UAAUUUGACUGUA--UAGUUUU 203s * * * ** * * * * * *** 203s 203s AC068303.10-12902_12788 UG--AG-G-CCUCGUGUUUCACCAGG---CU 203s AC097725.2-33800_33915 AGU-AGUG-CC-C-UG--UCGCAAGA---CU 203s X15934.1-3_121 UGGAAGAGUUCUCAAUUU--UGAGGG-CUCU 203s AC000104.1-17376_17496 UGG-AGGGUUCCCACUUUACUGUGGGUCCCA 203s AL023594.2-7651_7766 UGUAA----UC---UUUUUCU-UGAAACAUU 203s * * * 203s 203s 203s 204s 204s PROGRAM: T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 204s -full_log S [0] 204s -genepred_score S [0] nsd 204s -run_name S [0] 204s -mem_mode S [0] mem 204s -extend D [1] 1 204s -extend_mode S [1] matrix 204s -max_n_pair D [0] 10 204s -seq_name_for_quadruplet S [0] all 204s -compact S [0] default 204s -clean S [0] no 204s -do_self FL [0] 0 204s -do_normalise D [0] 1000 204s -template_file S [0] 204s -setenv S [0] 0 204s -export S [0] 0 204s -template_mode S [0] 204s -flip D [0] 0 204s -remove_template_file D [0] 0 204s -profile_template_file S [0] 204s -in S [1] Xblosum62mt 204s -seq S [1] sample_rnaseq1.fasta 204s -aln S [0] 204s -method_limits S [0] 204s -method S [0] 204s -lib S [0] 204s -profile S [0] 204s -profile1 S [0] 204s -profile2 S [0] 204s -pdb S [0] 204s -relax_lib D [0] 1 204s -filter_lib D [0] 0 204s -shrink_lib D [0] 0 204s -out_lib W_F [0] no 204s -out_lib_mode S [0] primary 204s -lib_only D [0] 0 204s -outseqweight W_F [0] no 204s -seq_source S [0] ANY 204s -cosmetic_penalty D [0] 0 204s -gapopen D [1] -25 204s -gapext D [1] -1 204s -fgapopen D [0] 0 204s -fgapext D [0] 0 204s -nomatch D [0] 0 204s -newtree W_F [0] default 204s -tree W_F [0] NO 204s -usetree R_F [0] 204s -tree_mode S [0] nj 204s -distance_matrix_mode S [1] ktup 204s -distance_matrix_sim_mode S [0] idmat_sim1 204s -quicktree FL [0] 0 204s -outfile W_F [0] default 204s -maximise FL [1] 1 204s -output S [0] aln html 204s -len D [0] 0 204s -infile R_F [0] 204s -matrix S [0] default 204s -tg_mode D [0] 1 204s -profile_mode S [0] cw_profile_profile 204s -profile_comparison S [0] profile 204s -dp_mode S [1] gotoh_pair_wise_lgp 204s -ktuple D [0] 1 204s -ndiag D [1] 10 204s -diag_threshold D [0] 0 204s -diag_mode D [0] 0 204s -sim_matrix S [0] vasiliky 204s -transform S [0] 204s -extend_seq FL [0] 0 204s -outorder S [0] input 204s -inorder S [0] aligned 204s -seqnos S [0] off 204s -case S [0] keep 204s -cpu D [0] 0 204s -ulimit D [0] -1 204s -maxnseq D [1] 10000 204s -maxlen D [0] -1 204s -sample_dp D [0] 0 204s -weight S [0] default 204s -seq_weight S [0] no 204s -align FL [1] 1 204s -mocca FL [0] 0 204s -domain FL [0] 0 204s -start D [0] 0 204s -len D [0] 0 204s -scale D [0] 0 204s -mocca_interactive FL [0] 0 204s -method_evaluate_mode S [0] default 204s -color_mode S [0] new 204s -aln_line_length D [0] 0 204s -evaluate_mode S [0] triplet 204s -get_type FL [0] 0 204s -clean_aln D [0] 0 204s -clean_threshold D [1] 1 204s -clean_iteration D [1] 1 204s -clean_evaluate_mode S [0] t_coffee_fast 204s -extend_matrix FL [0] 0 204s -prot_min_sim D [40] 40 204s -prot_max_sim D [90] 90 204s -prot_trim D [20] 20 204s -prot_min_cov D [40] 40 204s -pdb_type S [0] d 204s -pdb_min_sim D [35] 35 204s -pdb_max_sim D [100] 100 204s -pdb_min_cov D [50] 50 204s -pdb_blast_server W_F [0] EBI 204s -blast W_F [0] 204s -blast_server W_F [0] EBI 204s -pdb_db W_F [0] pdb 204s -protein_db W_F [0] uniref50 204s -method_log W_F [0] no 204s -struc_to_use S [0] 204s -cache W_F [0] use 204s -print_cache FL [0] 0 204s -align_pdb_param_file W_F [0] no 204s -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble 204s -external_aligner S [0] NO 204s -msa_mode S [0] tree 204s -et_mode S [0] et 204s -master S [0] no 204s -blast_nseq D [0] 0 204s -lalign_n_top D [0] 10 204s -iterate D [1] 0 204s -trim D [0] 0 204s -split D [0] 0 204s -trimfile S [0] default 204s -split D [0] 0 204s -split_nseq_thres D [0] 0 204s -split_score_thres D [0] 0 204s -check_pdb_status D [0] 0 204s -clean_seq_name D [0] 0 204s -seq_to_keep S [0] 204s -dpa_master_aln S [0] 204s -dpa_maxnseq D [1] 0 204s -dpa_min_score1 D [0] 204s -dpa_min_score2 D [0] 204s -dpa_keep_tmpfile FL [0] 0 204s -dpa_debug D [0] 0 204s -multi_core S [0] templates_jobs_relax_msa_evaluate 204s -n_core D [0] 1 204s -thread D [0] 1 204s -max_n_proc D [0] 0 204s -lib_list S [0] 204s -prune_lib_mode S [0] 5 204s -tip S [0] none 204s -rna_lib S [0] 204s -no_warning D [0] 0 204s -run_local_script D [0] 0 204s -proxy S [0] unset 204s -email S [0] 204s -clean_overaln D [0] 0 204s -overaln_param S [0] 204s -overaln_mode S [0] 204s -overaln_model S [0] 204s -overaln_threshold D [0] 0 204s -overaln_target D [0] 0 204s -overaln_P1 D [0] 0 204s -overaln_P2 D [0] 0 204s -overaln_P3 D [0] 0 204s -overaln_P4 D [0] 0 204s -exon_boundaries S [0] 204s -display D [0] 100 204s 204s INPUT FILES 204s Input File (X) blosum62mt 204s Input File (S) sample_rnaseq1.fasta Format fasta_seq 204s Input File (M) proba_pair 204s 204s Identify Master Sequences [no]: 204s 204s Master Sequences Identified 204s INPUT SEQUENCES: 5 SEQUENCES [RNA] 204s Input File sample_rnaseq1.fasta Seq AC000104.1-17376_17496 Length 121 type RNA Struct Unchecked 204s Input File sample_rnaseq1.fasta Seq AC068303.10-12902_12788 Length 115 type RNA Struct Unchecked 204s Input File sample_rnaseq1.fasta Seq AC097725.2-33800_33915 Length 116 type RNA Struct Unchecked 204s Input File sample_rnaseq1.fasta Seq AL023594.2-7651_7766 Length 116 type RNA Struct Unchecked 204s Input File sample_rnaseq1.fasta Seq X15934.1-3_121 Length 119 type RNA Struct Unchecked 204s 204s blosum62mt [matrix] 204s 204s MANUAL PENALTIES: gapopen=-25 gapext=-1 204s 204s Library Total Size: [0] 204s 204s 204s 204s UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1 204s 204s MAKE GUIDE TREE 204s [MODE=nj][DONE] 204s 204s PROGRESSIVE_ALIGNMENT [Tree Based] 204s Group 1: AC000104.1-17376_17496 204s Group 2: AC068303.10-12902_12788 204s Group 3: AC097725.2-33800_33915 204s Group 4: AL023594.2-7651_7766 204s Group 5: X15934.1-3_121 204s 204s 204s Group 6: [Group 5 ( 1 seq)] with [Group 1 ( 1 seq)]-->[Len= 123][PID:1607] 204s Group 7: [Group 3 ( 1 seq)] with [Group 2 ( 1 seq)]-->[Len= 121][PID:1607] 204s Group 8: [Group 7 ( 2 seq)] with [Group 6 ( 2 seq)]-->[Len= 126][PID:1607] 204s Group 9: [Group 4 ( 1 seq)] with [Group 8 ( 4 seq)]-->[Len= 131][PID:1607] 204s 204s 204s 204s OUTPUT RESULTS 204s #### File Type= GUIDE_TREE Format= newick Name= sample_rnaseq1.dnd 204s #### File Type= MSA Format= aln Name= sample_rnaseq1.aln 204s #### File Type= MSA Format= html Name= sample_rnaseq1.html 204s 204s # Command Line: t_coffee sample_rnaseq1.fasta -mode quickaln -ndiag 10 [PROGRAM:T-COFFEE] 204s # T-COFFEE Memory Usage: Current= 406.849 Mb, Max= 408.021 Mb 204s # Results Produced with T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 204s # T-COFFEE is available from http://www.tcoffee.org 204s # Register on: https://groups.google.com/group/tcoffee/ 204s #Single Thread 204s CLUSTAL FORMAT for T-COFFEE Version_13.41.0.28bdc39 [http://www.tcoffee.org] [MODE: quickaln ], CPU=0.00 sec, SCORE=3094, Nseq=5, Len=131 204s 204s AC068303.10-12902_12788 AACUCUUGUUUCUCUUCAG--AUCAUGUAAAUC--UUUC--GCCUUUUAU 204s AC097725.2-33800_33915 -ACUCUGGUUUCUCUUCAAUUGUCGAAUAAAUC--UUUC--GCCUUUUAC 204s X15934.1-3_121 AGC-CGUGUGA-UGAUGACAUAGCGAACUAUUC--UUUC--GCCUUUUAC 204s AC000104.1-17376_17496 AGC-CAUGUGG-UGAGCACAUAGCGAACUAUUC--UUUC--GCCUUUUAC 204s AL023594.2-7651_7766 -G-UCAAAGCACUUUGCAAA-AGCUAACGUAUCUGUUUCUUGCCUUUUAC 204s * * * * ** **** ******** 204s 204s AC068303.10-12902_12788 UAAAGAUUUCCAUGGG-GAGGAACA--GUUAUGAGUCUUUAUCCAAUUUC 204s AC097725.2-33800_33915 UAAAGAUUUCCGUGGA-GAGGAACACUCUAAUGAGUCUAAAAUAAUUUUU 204s X15934.1-3_121 UAAAGAAUACCGUGU--CAGCGUCACAAUUA-GCGGCAUACGCUAGUUUU 204s AC000104.1-17376_17496 UAAAGAAUACCGUGUG-CU-CUCCACGCUAA-GUGGCAUACGCCUAUUUU 204s AL023594.2-7651_7766 CAGAAACAGCCGUUUGUAAGGUGUGC--UAAUUUGACUGUA--UAGUUUU 204s * * * ** * * * * * *** 204s 204s AC068303.10-12902_12788 UG--AG-G-CCUCGUGUUUCACCAGG---CU 204s AC097725.2-33800_33915 AGU-AGUG-CC-C-UG--UCGCAAGA---CU 204s X15934.1-3_121 UGGAAGAGUUCUCAAUUU--UGAGGG-CUCU 204s AC000104.1-17376_17496 UGG-AGGGUUCCCACUUUACUGUGGGUCCCA 204s AL023594.2-7651_7766 UGUAA----UC---UUUUUCU-UGAAACAUU 204s * * * 204s 204s 204s 204s 204s PROGRAM: T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 204s -full_log S [0] 204s -genepred_score S [0] nsd 204s -run_name S [0] 204s -mem_mode S [0] mem 204s -extend D [1] 1 204s -extend_mode S [0] very_fast_triplet 204s -max_n_pair D [0] 10 204s -seq_name_for_quadruplet S [0] all 204s -compact S [0] default 204s -clean S [0] no 204s -do_self FL [0] 0 204s -do_normalise D [0] 1000 204s -template_file S [0] 204s -setenv S [0] 0 204s -export S [0] 0 204s -template_mode S [0] 204s -flip D [0] 0 204s -remove_template_file D [0] 0 204s -profile_template_file S [0] 204s -in S [0] 204s -seq S [1] proteases_small.fasta 204s -aln S [1] g0.aln g5.aln g10.aln g15.aln 204s -method_limits S [0] 204s -method S [0] 204s -lib S [0] 204s -profile S [0] 204s -profile1 S [0] 204s -profile2 S [0] 204s -pdb S [0] 204s -relax_lib D [0] 1 204s -filter_lib D [0] 0 204s -shrink_lib D [0] 0 204s -out_lib W_F [0] no 204s -out_lib_mode S [0] primary 204s -lib_only D [0] 0 204s -outseqweight W_F [0] no 204s -seq_source S [0] ANY 204s -cosmetic_penalty D [0] 0 204s -gapopen D [0] 0 204s -gapext D [0] 0 204s -fgapopen D [0] 0 204s -fgapext D [0] 0 204s -nomatch D [0] 0 204s -newtree W_F [0] default 204s -tree W_F [0] NO 204s -usetree R_F [0] 204s -tree_mode S [0] nj 204s -distance_matrix_mode S [0] ktup 204s -distance_matrix_sim_mode S [0] idmat_sim1 204s -quicktree FL [0] 0 204s -outfile W_F [0] default 204s -maximise FL [1] 1 204s -output S [1] clustalw html 204s -len D [0] 0 204s -infile R_F [0] 204s -matrix S [0] default 204s -tg_mode D [0] 1 204s -profile_mode S [0] cw_profile_profile 204s -profile_comparison S [0] profile 204s -dp_mode S [0] linked_pair_wise 204s -ktuple D [0] 1 204s -ndiag D [0] 0 204s -diag_threshold D [0] 0 204s -diag_mode D [0] 0 204s -sim_matrix S [0] vasiliky 204s -transform S [0] 204s -extend_seq FL [0] 0 204s -outorder S [0] input 204s -inorder S [0] aligned 204s -seqnos S [0] off 204s -case S [0] keep 204s -cpu D [0] 0 204s -ulimit D [0] -1 204s -maxnseq D [0] -1 204s -maxlen D [0] -1 204s -sample_dp D [0] 0 204s -weight S [0] default 204s -seq_weight S [0] no 204s -align FL [1] 1 204s -mocca FL [0] 0 204s -domain FL [0] 0 204s -start D [0] 0 204s -len D [0] 0 204s -scale D [0] 0 204s -mocca_interactive FL [0] 0 204s -method_evaluate_mode S [0] default 204s -color_mode S [0] new 204s -aln_line_length D [0] 0 204s -evaluate_mode S [0] triplet 204s -get_type FL [0] 0 204s -clean_aln D [0] 0 204s -clean_threshold D [1] 1 204s -clean_iteration D [1] 1 204s -clean_evaluate_mode S [0] t_coffee_fast 204s -extend_matrix FL [0] 0 204s -prot_min_sim D [40] 40 204s -prot_max_sim D [90] 90 204s -prot_trim D [20] 20 204s -prot_min_cov D [40] 40 204s -pdb_type S [0] d 204s -pdb_min_sim D [35] 35 204s -pdb_max_sim D [100] 100 204s -pdb_min_cov D [50] 50 204s -pdb_blast_server W_F [0] EBI 204s -blast W_F [0] 204s -blast_server W_F [0] EBI 204s -pdb_db W_F [0] pdb 204s -protein_db W_F [0] uniref50 204s -method_log W_F [0] no 204s -struc_to_use S [0] 204s -cache W_F [0] use 204s -print_cache FL [0] 0 204s -align_pdb_param_file W_F [0] no 204s -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble 204s -external_aligner S [0] NO 204s -msa_mode S [0] tree 204s -et_mode S [0] et 204s -master S [0] no 204s -blast_nseq D [0] 0 204s -lalign_n_top D [0] 10 204s -iterate D [0] 0 204s -trim D [0] 0 204s -split D [0] 0 204s -trimfile S [0] default 204s -split D [0] 0 204s -split_nseq_thres D [0] 0 204s -split_score_thres D [0] 0 204s -check_pdb_status D [0] 0 204s -clean_seq_name D [0] 0 204s -seq_to_keep S [0] 204s -dpa_master_aln S [0] 204s -dpa_maxnseq D [0] 0 204s -dpa_min_score1 D [0] 204s -dpa_min_score2 D [0] 204s -dpa_keep_tmpfile FL [0] 0 204s -dpa_debug D [0] 0 204s -multi_core S [0] templates_jobs_relax_msa_evaluate 204s -n_core D [0] 1 204s -thread D [0] 1 204s -max_n_proc D [0] 0 204s -lib_list S [0] 204s -prune_lib_mode S [0] 5 204s -tip S [0] none 204s -rna_lib S [0] 204s -no_warning D [0] 0 204s -run_local_script D [0] 0 204s -proxy S [0] unset 204s -email S [0] 204s -clean_overaln D [0] 0 204s -overaln_param S [0] 204s -overaln_mode S [0] 204s -overaln_model S [0] 204s -overaln_threshold D [0] 0 204s -overaln_target D [0] 0 204s -overaln_P1 D [0] 0 204s -overaln_P2 D [0] 0 204s -overaln_P3 D [0] 0 204s -overaln_P4 D [0] 0 204s -exon_boundaries S [0] 204s -display D [0] 100 204s 204s INPUT FILES 204s Input File (S) proteases_small.fasta Format fasta_seq 204s Input File (A) g0.aln Format clustal_aln 204s Input File (A) g5.aln Format clustal_aln 204s Input File (A) g10.aln Format clustal_aln 204s Input File (A) g15.aln Format clustal_aln 205s 205s Identify Master Sequences [no]: 205s 205s Master Sequences Identified 205s INPUT SEQUENCES: 19 SEQUENCES [PROTEIN] 205s Input File proteases_small.fasta Seq sp|O35205|GRAK_MOUSE Length 263 type PROTEIN Struct Unchecked 205s Input File g0.aln Seq sp|P00757|KLKB4_MOUSE Length 256 type PROTEIN Struct Unchecked 205s Input File g0.aln Seq sp|P00773|ELA1_RAT Length 266 type PROTEIN Struct Unchecked 205s Input File g0.aln Seq sp|P03953|CFAD_MOUSE Length 259 type PROTEIN Struct Unchecked 205s Input File g0.aln Seq sp|P07338|CTRB1_RAT Length 263 type PROTEIN Struct Unchecked 205s Input File g0.aln Seq sp|P08246|ELNE_HUMAN Length 267 type PROTEIN Struct Unchecked 205s Input File proteases_small.fasta Seq sp|P08884|GRAE_MOUSE Length 248 type PROTEIN Struct Unchecked 205s Input File g0.aln Seq sp|P20160|CAP7_HUMAN Length 251 type PROTEIN Struct Unchecked 205s Input File proteases_small.fasta Seq sp|P21844|MCPT5_MOUSE Length 247 type PROTEIN Struct Unchecked 205s Input File g0.aln Seq sp|P29786|TRY3_AEDAE Length 254 type PROTEIN Struct Unchecked 205s Input File g0.aln Seq sp|P35037|TRY3_ANOGA Length 275 type PROTEIN Struct Unchecked 205s Input File g0.aln Seq sp|P80015|CAP7_PIG Length 219 type PROTEIN Struct Unchecked 205s Input File g0.aln Seq sp|Q00871|CTRB1_PENVA Length 271 type PROTEIN Struct Unchecked 205s Input File g0.aln Seq sp|Q03238|GRAM_RAT Length 258 type PROTEIN Struct Unchecked 205s Input File proteases_small.fasta Seq sp|Q06606|GRZ2_RAT Length 248 type PROTEIN Struct Unchecked 205s Input File g0.aln Seq sp|Q6H321|KLK2_HORSE Length 261 type PROTEIN Struct Unchecked 205s Input File proteases_small.fasta Seq sp|Q7YRZ7|GRAA_BOVIN Length 258 type PROTEIN Struct Unchecked 205s Input File g0.aln Seq sp|Q91VE3|KLK7_MOUSE Length 249 type PROTEIN Struct Unchecked 205s Input File proteases_small.fasta Seq sp|Q9Y5K2|KLK4_HUMAN Length 254 type PROTEIN Struct Unchecked 205s 205s Multi Core Mode: 1 processors: 205s 205s --- Process Method/Library/Aln Sproteases_small.fasta 205s xxx Retrieved Sproteases_small.fasta 205s --- Process Method/Library/Aln Ag0.aln 205s xxx Retrieved Ag0.aln 205s --- Process Method/Library/Aln Ag5.aln 205s xxx Retrieved Ag5.aln 205s --- Process Method/Library/Aln Ag10.aln 205s xxx Retrieved Ag10.aln 206s --- Process Method/Library/Aln Ag15.aln 206s xxx Retrieved Ag15.aln 206s 206s All Methods Retrieved 206s 206s MANUAL PENALTIES: gapopen=0 gapext=0 206s 206s Library Total Size: [12058] 206s 206s Library Relaxation: Multi_proc [1] 206s 206s ! [Relax Library][TOT= 19][ 0 %] ! [Relax Library][TOT= 19][ 10 %] ! [Relax Library][TOT= 19][ 15 %] ! [Relax Library][TOT= 19][ 21 %] ! [Relax Library][TOT= 19][ 26 %] ! [Relax Library][TOT= 19][ 31 %] ! [Relax Library][TOT= 19][ 36 %] ! [Relax Library][TOT= 19][ 42 %] ! [Relax Library][TOT= 19][ 47 %] ! [Relax Library][TOT= 19][ 52 %] ! [Relax Library][TOT= 19][ 57 %] ! [Relax Library][TOT= 19][ 63 %] ! [Relax Library][TOT= 19][ 68 %] ! [Relax Library][TOT= 19][ 73 %] ! [Relax Library][TOT= 19][ 78 %] ! [Relax Library][TOT= 19][ 84 %] ! [Relax Library][TOT= 19][ 89 %] ! [Relax Library][TOT= 19][ 94 %] ! [Relax Library][TOT= 19][100 %] 206s 206s Relaxation Summary: [12058]--->[12058] 206s 206s 206s 206s UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1 206s 206s MAKE GUIDE TREE 206s [MODE=nj][DONE] 206s 206s PROGRESSIVE_ALIGNMENT [Tree Based] 206s Group 1: sp|O35205|GRAK_MOUSE 206s Group 2: sp|P00757|KLKB4_MOUSE 206s Group 3: sp|P00773|ELA1_RAT 206s Group 4: sp|P03953|CFAD_MOUSE 206s Group 5: sp|P07338|CTRB1_RAT 206s Group 6: sp|P08246|ELNE_HUMAN 206s Group 7: sp|P08884|GRAE_MOUSE 206s Group 8: sp|P20160|CAP7_HUMAN 206s Group 9: sp|P21844|MCPT5_MOUSE 206s Group 10: sp|P29786|TRY3_AEDAE 206s Group 11: sp|P35037|TRY3_ANOGA 206s Group 12: sp|P80015|CAP7_PIG 206s Group 13: sp|Q00871|CTRB1_PENVA 206s Group 14: sp|Q03238|GRAM_RAT 206s Group 15: sp|Q06606|GRZ2_RAT 206s Group 16: sp|Q6H321|KLK2_HORSE 206s Group 17: sp|Q7YRZ7|GRAA_BOVIN 206s Group 18: sp|Q91VE3|KLK7_MOUSE 206s Group 19: sp|Q9Y5K2|KLK4_HUMAN 206s 206s #Single Thread 206s 206s Group 20: [Group 16 ( 1 seq)] with [Group 2 ( 1 seq)]-->[Len= 262][PID:1650]#Single Thread 206s 206s Group 21: [Group 19 ( 1 seq)] with [Group 18 ( 1 seq)]-->[Len= 258][PID:1650]#Single Thread 206s 206s Group 22: [Group 21 ( 2 seq)] with [Group 20 ( 2 seq)]-->[Len= 272][PID:1650]#Single Thread 206s 206s Group 23: [Group 4 ( 1 seq)] with [Group 1 ( 1 seq)]-->[Len= 268][PID:1650]#Single Thread 206s 206s Group 24: [Group 9 ( 1 seq)] with [Group 3 ( 1 seq)]-->[Len= 270][PID:1650]#Single Thread 206s 206s Group 25: [Group 24 ( 2 seq)] with [Group 23 ( 2 seq)]-->[Len= 285][PID:1650]#Single Thread 206s 206s Group 26: [Group 15 ( 1 seq)] with [Group 7 ( 1 seq)]-->[Len= 251][PID:1650]#Single Thread 206s 206s Group 27: [Group 14 ( 1 seq)] with [Group 26 ( 2 seq)]-->[Len= 268][PID:1650]#Single Thread 206s 206s Group 28: [Group 27 ( 3 seq)] with [Group 25 ( 4 seq)]-->[Len= 291][PID:1650]#Single Thread 206s 206s Group 29: [Group 17 ( 1 seq)] with [Group 28 ( 7 seq)]-->[Len= 295][PID:1650]#Single Thread 206s 206s Group 30: [Group 12 ( 1 seq)] with [Group 8 ( 1 seq)]-->[Len= 252][PID:1650]#Single Thread 206s 206s Group 31: [Group 30 ( 2 seq)] with [Group 6 ( 1 seq)]-->[Len= 272][PID:1650]#Single Thread 206s 206s Group 32: [Group 13 ( 1 seq)] with [Group 31 ( 3 seq)]-->[Len= 300][PID:1650]#Single Thread 206s 206s Group 33: [Group 32 ( 4 seq)] with [Group 29 ( 8 seq)]-->[Len= 329][PID:1650]#Single Thread 206s 206s Group 34: [Group 33 ( 12 seq)] with [Group 22 ( 4 seq)]-->[Len= 343][PID:1650]#Single Thread 206s 206s Group 35: [Group 11 ( 1 seq)] with [Group 10 ( 1 seq)]-->[Len= 275][PID:1650]#Single Thread 206s 206s Group 36: [Group 35 ( 2 seq)] with [Group 5 ( 1 seq)]-->[Len= 286][PID:1650]#Single Thread 206s 206s Group 37: [Group 36 ( 3 seq)] with [Group 34 ( 16 seq)]-->[Len= 351][PID:1650] 206s 206s 206s ! [Final Evaluation][TOT= 351][ 0 %] ! [Final Evaluation][TOT= 351][ 1 %] ! [Final Evaluation][TOT= 351][ 2 %] ! [Final Evaluation][TOT= 351][ 3 %] ! [Final Evaluation][TOT= 351][ 4 %] ! [Final Evaluation][TOT= 351][ 5 %] ! [Final Evaluation][TOT= 351][ 6 %] ! [Final Evaluation][TOT= 351][ 7 %] ! [Final Evaluation][TOT= 351][ 8 %] ! [Final Evaluation][TOT= 351][ 9 %] ! [Final Evaluation][TOT= 351][ 10 %] ! [Final Evaluation][TOT= 351][ 11 %] ! [Final Evaluation][TOT= 351][ 12 %] ! [Final Evaluation][TOT= 351][ 13 %] ! [Final Evaluation][TOT= 351][ 14 %] ! [Final Evaluation][TOT= 351][ 15 %] ! [Final Evaluation][TOT= 351][ 16 %] ! [Final Evaluation][TOT= 351][ 17 %] ! [Final Evaluation][TOT= 351][ 18 %] ! [Final Evaluation][TOT= 351][ 19 %] ! [Final Evaluation][TOT= 351][ 20 %] ! [Final Evaluation][TOT= 351][ 21 %] ! [Final Evaluation][TOT= 351][ 22 %] ! [Final Evaluation][TOT= 351][ 23 %] ! [Final Evaluation][TOT= 351][ 24 %] ! [Final Evaluation][TOT= 351][ 25 %] ! [Final Evaluation][TOT= 351][ 26 %] ! [Final Evaluation][TOT= 351][ 27 %] ! [Final Evaluation][TOT= 351][ 28 %] ! [Final Evaluation][TOT= 351][ 29 %] ! [Final Evaluation][TOT= 351][ 30 %] ! [Final Evaluation][TOT= 351][ 31 %] ! [Final Evaluation][TOT= 351][ 32 %] ! [Final Evaluation][TOT= 351][ 33 %] ! [Final Evaluation][TOT= 351][ 34 %] ! [Final Evaluation][TOT= 351][ 35 %] ! [Final Evaluation][TOT= 351][ 36 %] ! [Final Evaluation][TOT= 351][ 37 %] ! [Final Evaluation][TOT= 351][ 38 %] ! [Final Evaluation][TOT= 351][ 39 %] ! [Final Evaluation][TOT= 351][ 40 %] ! [Final Evaluation][TOT= 351][ 41 %] ! [Final Evaluation][TOT= 351][ 42 %] ! [Final Evaluation][TOT= 351][ 43 %] ! [Final Evaluation][TOT= 351][ 44 %] ! [Final Evaluation][TOT= 351][ 45 %] ! [Final Evaluation][TOT= 351][ 46 %] ! [Final Evaluation][TOT= 351][ 47 %] ! [Final Evaluation][TOT= 351][ 48 %] ! [Final Evaluation][TOT= 351][ 49 %] ! [Final Evaluation][TOT= 351][ 50 %] ! [Final Evaluation][TOT= 351][ 51 %] ! [Final Evaluation][TOT= 351][ 52 %] ! [Final Evaluation][TOT= 351][ 53 %] ! [Final Evaluation][TOT= 351][ 54 %] ! [Final Evaluation][TOT= 351][ 55 %] ! [Final Evaluation][TOT= 351][ 56 %] ! [Final Evaluation][TOT= 351][ 57 %] ! [Final Evaluation][TOT= 351][ 58 %] ! [Final Evaluation][TOT= 351][ 59 %] ! [Final Evaluation][TOT= 351][ 60 %] ! [Final Evaluation][TOT= 351][ 61 %] ! [Final Evaluation][TOT= 351][ 62 %] ! [Final Evaluation][TOT= 351][ 63 %] ! [Final Evaluation][TOT= 351][ 64 %] ! [Final Evaluation][TOT= 351][ 65 %] ! [Final Evaluation][TOT= 351][ 66 %] ! [Final Evaluation][TOT= 351][ 67 %] ! [Final Evaluation][TOT= 351][ 68 %] ! [Final Evaluation][TOT= 351][ 69 %] ! [Final Evaluation][TOT= 351][ 70 %] ! [Final Evaluation][TOT= 351][ 71 %] ! [Final Evaluation][TOT= 351][ 72 %] ! [Final Evaluation][TOT= 351][ 73 %] ! [Final Evaluation][TOT= 351][ 74 %] ! [Final Evaluation][TOT= 351][ 75 %] ! [Final Evaluation][TOT= 351][ 76 %] ! [Final Evaluation][TOT= 351][ 77 %] ! [Final Evaluation][TOT= 351][ 78 %] ! [Final Evaluation][TOT= 351][ 79 %] ! [Final Evaluation][TOT= 351][ 80 %] ! [Final Evaluation][TOT= 351][ 81 %] ! [Final Evaluation][TOT= 351][ 82 %] ! [Final Evaluation][TOT= 351][ 83 %] ! [Final Evaluation][TOT= 351][ 84 %] ! [Final Evaluation][TOT= 351][ 85 %] ! [Final Evaluation][TOT= 351][ 86 %] ! [Final Evaluation][TOT= 351][ 87 %] ! [Final Evaluation][TOT= 351][ 88 %] ! [Final Evaluation][TOT= 351][ 89 %] ! [Final Evaluation][TOT= 351][ 90 %] ! [Final Evaluation][TOT= 351][ 91 %] ! [Final Evaluation][TOT= 351][ 92 %] ! [Final Evaluation][TOT= 351][ 93 %] ! [Final Evaluation][TOT= 351][ 94 %] ! [Final Evaluation][TOT= 351][ 95 %] ! [Final Evaluation][TOT= 351][ 96 %] ! [Final Evaluation][TOT= 351][ 97 %] ! [Final Evaluation][TOT= 351][ 98 %] ! [Final Evaluation][TOT= 351][ 99 %] ! [Final Evaluation][TOT= 351][100 %] 206s 206s #Single Thread 206s CLUSTAL FORMAT for T-COFFEE Version_13.41.0.28bdc39 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=74, Nseq=19, Len=351 206s 206s sp|Q06606|GRZ2_RAT M----------F-LFLFFLVAI-----LPV--N-------TE-GG----- 206s sp|P08884|GRAE_MOUSE M----------P-PVLILLTLL-----LPL--G-------AG-AE----- 206s sp|P21844|MCPT5_MOUSE MH---------L-LTLHLLLLL-----LGS--S-------TK-A------ 206s sp|O35205|GRAK_MOUSE MR---------F-SSWALVSLV-----AGVY-M-------SS-EC----F 206s sp|Q9Y5K2|KLK4_HUMAN MATAGNPW-G-W-FLGY-LILG-----VAG--S-------LV-S------ 206s sp|Q7YRZ7|GRAA_BOVIN MN-IPF---PFSFPPAICLLLI-----PGV--F-------PV-S------ 206s sp|P29786|TRY3_AEDAE M---N--Q--FL-FVSFCALLD-----SA-------K-V-SA-AT--L-S 206s sp|P35037|TRY3_ANOGA MI-SN--KIAIL-LAVLVVAVACAQARVA----QQHR-SVQALPR--FLP 206s sp|P03953|CFAD_MOUSE MH-S-----S-V-YFVALVILG-----AAVC-A--------A-Q-----P 206s sp|P20160|CAP7_HUMAN ----MTRL-T-V-LALLAGLLA-----SS-R---------AG-SS----P 206s sp|P80015|CAP7_PIG -------------------------------------------------- 206s sp|P08246|ELNE_HUMAN MT-LGRRL-A-C-L-FLACVLP-----AL-L---------LG-GT----A 206s sp|Q00871|CTRB1_PENVA ----MIGK-L-S-LLLVCVAVA-----SGNPAAG--KPWHWKSPKPLVDP 206s sp|P07338|CTRB1_RAT M------A--FL-WLVSCFALV-----GA-------T-FGCGVPT--IQP 206s sp|P00773|ELA1_RAT ML---------R-FLVFASLVL-----YGH--S-------TQ-DF----P 206s sp|Q91VE3|KLK7_MOUSE M-----GV---W-LLSL-ITVL-----LSL--A-------LETA------ 206s sp|Q6H321|KLK2_HORSE M----------W-FLVLCLDLS-----LGE--T-------GA-L-----P 206s sp|P00757|KLKB4_MOUSE M----------W-FLILFLALS-----LGG--I-------DA-A-----P 206s sp|Q03238|GRAM_RAT L-------------LLL-LA-L-----KTL--W-------AV-GN----R 206s 206s 206s sp|Q06606|GRZ2_RAT --------EIIWGTESKPHSRPYM-AFIKFYDSNSEPHHCGGFLVAKDIV 206s sp|P08884|GRAE_MOUSE --------EIIGGHVVKPHSRPYM-AFVKSVDIEGNRRYCGGFLVQDDFV 206s sp|P21844|MCPT5_MOUSE -------GEIIGGTECIPHSRPYM-AYLEIVTSENYLSACSGFLIRRNFV 206s sp|O35205|GRAK_MOUSE ---H---TEIIGGREVQPHSRPFM-ASIQ-YRSK---HICGGVLIHPQWV 206s sp|Q9Y5K2|KLK4_HUMAN G-SC---SQIINGEDCSPHSQPWQAALVM--ENE---LFCSGVLVHPQWV 206s sp|Q7YRZ7|GRAA_BOVIN ---C---EGIIGGNEVAPHTRRYM-ALIK-G-L----KLCAGALIKENWV 206s sp|P29786|TRY3_AEDAE S------GRIVGGFQIDIAEVPHQ-VSLQ-RSGR---HFCGGSIISPRWV 206s sp|P35037|TRY3_ANOGA RPKYDVGHRIVGGFEIDVSETPYQ-VSLQ-YFNS---HRCGGSVLNSKWI 206s sp|P03953|CFAD_MOUSE ---R---GRILGGQEAAAHARPYM-ASVQ-VNGT---HVCGGTLLDEQWV 206s sp|P20160|CAP7_HUMAN L-----L-DIVGGRKARPRQFPFL-ASIQ-NQGR---HFCGGALIHARFV 206s sp|P80015|CAP7_PIG ---------IVGGRRAQPQEFPFL-ASIQ-KQGR---PFCAGALVHPRFV 206s sp|P08246|ELNE_HUMAN L-----ASEIVGGRRARPHAWPFM-VSLQ-LRGG---HFCGATLIAPNFV 206s sp|Q00871|CTRB1_PENVA RIHVNATPRIVGGVEATPHSWPHQ-AALF-IDDM---YFCGGSLISSEWV 206s sp|P07338|CTRB1_RAT VL--TGLSRIVNGEDAIPGSWPWQ-VSL--QDKTG-FHFCGGSLISEDWV 206s sp|P00773|ELA1_RAT E--TN--ARVVGGAEARRNSWPSQ-ISLQYLSGGSWYHTCGGTLIRRNWV 206s sp|Q91VE3|KLK7_MOUSE G-QG---ERIIDGYKCKEGSHPWQVALLK--GNQ---LHCGGVLVDKYWV 206s sp|Q6H321|KLK2_HORSE P-IQ---SRIIGGWECEKHSKPWQVAVYH--QGH---FQCGGVLVHPQWV 206s sp|P00757|KLKB4_MOUSE P-VQ---SQV----DCE-NSQPWHVAVYR--FNK---YQCGGVLLDRNWV 206s sp|Q03238|GRAM_RAT ---FE--AQIIGGREAVPHSRPYM-VSLQ-NTK-S--HMCGGVLVHQKWV 206s : *.. :: : 206s 206s sp|Q06606|GRZ2_RAT MTAAHCN----GR---NIKVTLGAHNIK-KQE-NTQVISVVKAKPHENYD 206s sp|P08884|GRAE_MOUSE LTAAHCR----NR---TMTVTLGAHNIKAKEE-TQQIIPVAKAIPHPDYN 206s sp|P21844|MCPT5_MOUSE LTAAHC--A-G-R---SITVLLGAHNKTSKED-TWQKLEVEKQFLHPKYD 206s sp|O35205|GRAK_MOUSE LTAAHCYSW-FPR-GHSPTVVLGAHSLSKNEP-MKQTFEIKKFIPFSRLQ 206s sp|Q9Y5K2|KLK4_HUMAN LSAAHCF---Q-N---SYTIGLGLHSLEADQEPGSQMVEASLSVRHPEYN 206s sp|Q7YRZ7|GRAA_BOVIN LTAAHCD---L-K-G-NPQVILGAHSTSHKEK-LDQVFSIKKAIPYPCFD 206s sp|P29786|TRY3_AEDAE LTRAHCTTN-T-DPA-AYTIRAGSTDRTNGGI-IV---KVKSVIPHPQYN 206s sp|P35037|TRY3_ANOGA LTAAHCTVN-L-QPS-SLAVRLGSSRHASGGT-VV---RVARVLEHPNYD 206s sp|P03953|CFAD_MOUSE LSAAHCMDG-VTD-DDSVQVLLGAHSLSAPEP-YKRWYDVQSVVPHPGSR 206s sp|P20160|CAP7_HUMAN MTAASCFQS-Q-NPG-VSTVVLGAYDLRRRER-QSRQTFSISSMSENGYD 206s sp|P80015|CAP7_PIG LTAASCFRG-K-NSG-SASVVLGAYDLRQQE--QSRQTFSIRSISQNGYD 206s sp|P08246|ELNE_HUMAN MSAAHCVAN-V-NVR-AVRVVLGAHNLSRRE--PTRQVFAVQRIFENGYD 206s sp|Q00871|CTRB1_PENVA LTAAHCMDG-A-GF---VEVVLGAHNIRQNEA-SQVSITSTDFFTHENWN 206s sp|P07338|CTRB1_RAT VTAAHC--G-V-KT--SDVVVAGEFDQGSDEE-NIQVLKIAQVFKNPKFN 206s sp|P00773|ELA1_RAT MTAAHCV-S-SQM---TFRVVVGDHNLSQNDG-TEQYVSVQKIMVHPTWN 206s sp|Q91VE3|KLK7_MOUSE LTAAHCK---M-G---QYQVQLGSDKI-GDQ--SAQKIKATKSFRHPGYS 206s sp|Q6H321|KLK2_HORSE LTAAHCM---S-D---DYQIWLGRHNLSEDED-TAQFHQVSDSFLDPQFD 206s sp|P00757|KLKB4_MOUSE LTAAHCY---N-D---KYQVWLGKNNFLEDEP-SDQHRLVSKAIPHPDFN 206s sp|Q03238|GRAM_RAT LTAAHCL-SEPLQ---QLKLVFGLHSLHDPQD-PGLTFYIKQAIKHPGYN 206s :: * * : * 206s 206s sp|Q06606|GRZ2_RAT RD-SH----------F--NDIMLLKLERKAQLNGVVKTIALPR-SQDWVK 206s sp|P08884|GRAE_MOUSE AT-AF----------F--SDIMLLKLESKAKRTKAVRPLKLPR-PNARVK 206s sp|P21844|MCPT5_MOUSE EN-LV----------V--HDIMLLKLKEKAKLTLGVGTLPLSA-NFNFIP 206s sp|O35205|GRAK_MOUSE SG-SA----------S--HDIMLIKLRTAAELNKNVQLLHLG--SKNYLR 206s sp|Q9Y5K2|KLK4_HUMAN R---------PLL---A-NDLMLIKLDESVSESDTIRSISIAS-QCPTA- 206s sp|Q7YRZ7|GRAA_BOVIN PQ-TF----------E--GDLQLLQLEGKATMTKAVGILQLPR-TEDDVK 206s sp|P29786|TRY3_AEDAE GD-TY----------N--YDFSLLELDESIGFSRSIEAIALPD-ASETVA 206s sp|P35037|TRY3_ANOGA DS-TI----------D--YDFSLMELESELTFSDVVQPVSLPD-QDEAVE 206s sp|P03953|CFAD_MOUSE PD-SL----------E--DDLILFKLSQNASLGPHVRPLPLQY-EDKEVE 206s sp|P20160|CAP7_HUMAN PQQNL-------------NDLMLLQLDREANLTSSVTILPLPL-QNATVE 206s sp|P80015|CAP7_PIG PRQNL-------------NDVLLLQLDREARLTPSVALVPLPP-QNATVE 206s sp|P08246|ELNE_HUMAN PV-NL----------L--NDIVILQLNGSATINANVQVAQLPA-QGRRLG 206s sp|Q00871|CTRB1_PENVA SW-LL----------T--NDIALIRLPSPVSLNSNIKTVKLP--S-SDVS 206s sp|P07338|CTRB1_RAT MF-TV----------R--NDITLLKLATPAQFSETVSAVCLPN-VDDDFP 206s sp|P00773|ELA1_RAT SN-NV----------AAGYDIALLRLAQSVTLNNYVQLAVLPQ-EGTILA 206s sp|Q91VE3|KLK7_MOUSE T---------KTH---V-NDIMLVRLDEPVKMSSKVEAVQLPE-HCEPP- 206s sp|Q6H321|KLK2_HORSE LS-LLKKKYLRPYDDIS-HDLMLLRLAQPARITDAVKILDLPT-QEPKL- 206s sp|P00757|KLKB4_MOUSE MS-LLNEHTPQPEDDYS-NDLMLLRLSKPADITDVVKPITLPT-EEPKL- 206s sp|Q03238|GRAM_RAT LK--Y----------E--NDLALLKLDGRVKPSKNVKPLALPRKPRDKPA 206s *. :..* : : 206s 206s sp|Q06606|GRZ2_RAT PGQVCTVAGWG--RL-ANCTSSNTLQEVNLEVQKGQKCQ-DM-----SED 206s sp|P08884|GRAE_MOUSE PGDVCSVAGWGSRSI-NDTKASARLREAQLVIQEDEECK-KR-----FRH 206s sp|P21844|MCPT5_MOUSE PGRMCRAVGWG-RTN-VNEPASDTLQEVKMRLQEPQACKHF-TSF-RH-N 206s sp|O35205|GRAK_MOUSE DGTKCQVTGWGTTKP-DLLTASDTLREVTVTIISRKRCN-S-QSYYNHKP 206s sp|Q9Y5K2|KLK4_HUMAN -GNSCLVSGWGLLAN--G-RMPTVLQCVNVSVVSEEVCS-K--L---YDP 206s sp|Q7YRZ7|GRAA_BOVIN PHTKCHVAGWGSTKK-DACQMSNALREANVTVIDRKICN-DAQH-YNFNP 206s sp|P29786|TRY3_AEDAE DGAMCTVSGWGDTKN-VF-EMNTLLRAVNVPSYNQAECA-A--A-LVNVV 206s sp|P35037|TRY3_ANOGA DGTMTIVSGWGNTQS-AA-ESNAILRAANVPTVNQKECT-I--A-YSSSG 206s sp|P03953|CFAD_MOUSE PGTLCDVAGWGVVTH-AG-RRPDVLHQLRVSIMNRTTCN-L--RTYH-DG 206s sp|P20160|CAP7_HUMAN AGTRCQVAGWGSQRS-GG-RLSRFPRFVNVTVTPEDQCR-P--N---N-V 206s sp|P80015|CAP7_PIG AGTNCQVAGWGTQRL-RR-LFSRFPRVLNVTVTS-NPCL-P--R---D-M 206s sp|P08246|ELNE_HUMAN NGVQCLAMGWGLLGR-NR-GIASVLQELNVTVVT-SLCR-R--S---N-V 206s sp|Q00871|CTRB1_PENVA VGTTVTPTGWGRPSD-SASGISDVLRQVNVPVMTNADCD-S--V--YG-- 206s sp|P07338|CTRB1_RAT PGTVCATTGWGKTKY-NALKTPEKLQQAALPIVSEADCK-K--S--WGSK 206s sp|P00773|ELA1_RAT NNNPCYITGWGRTRT-NG-QLSQTLQQAYLPSVDYSICS---SSSYWGST 206s sp|Q91VE3|KLK7_MOUSE -GTSCTVSGWGTTTS-PDVTFPSDLMCSDVKLISSRECK-K--V---YKD 206s sp|Q6H321|KLK2_HORSE -GSTCYTSGWGLIST-FTNRGSGTLQCVELRLQSNEKCA-R--A---YPE 206s sp|P00757|KLKB4_MOUSE -GSTCLASGWG-STTPIKFKYPDDLQCVNLKLLPNEDCD-K--A---HEM 206s sp|Q03238|GRAM_RAT EGSRCSTAGWGITHQ-RG-QLAKSLQELDLRLLDTRMCN-NSRF---WNG 206s *** : * 206s 206s sp|Q06606|GRZ2_RAT YNDSI-QLCVGNPSEGK-A-TGKGDSGGPFV---CD-GVAQGIVSYR--L 206s sp|P08884|GRAE_MOUSE YTETT-EICAGDLKKIK-T-PFKGDSGGPLV---CD-NKAYGLLAYA--K 206s sp|P21844|MCPT5_MOUSE -S----QLCVGNPKKMQ-N-VYKGDSGGPLL---CA-GIAQGIASYV--H 206s sp|O35205|GRAK_MOUSE VITKD-MICAGD-ARGQKD-SCKGDSGGPLI---CK-GIFHALVSQG--Y 206s sp|Q9Y5K2|KLK4_HUMAN LYHPS-MFCAGGGQDQK-D-SCNGDSGGPLI---CN-GYLQGLVSFG--K 206s sp|Q7YRZ7|GRAA_BOVIN VIDLS-MICAGG-RKGEDD-SCEGDSGSPLI---CD-NVFRGVTSFG--- 206s sp|P29786|TRY3_AEDAE PVTEQ-MICAGYAAGGK-D-SCQGDSGGPLVS---G-DKLVGVVSWG--K 206s sp|P35037|TRY3_ANOGA GITDR-MLCAGYKRGGK-D-ACQGDSGGPLVV---D-GKLVGVVSWG--F 206s sp|P03953|CFAD_MOUSE VVTIN-MMCA-E-SNRR-D-TCRGDS 206s 206s OUTPUT RESULTS 206s #### File Type= GUIDE_TREE Format= newick Name= proteases_small.dnd 207s #### File Type= MSA Format= clustalw Name= proteases_small.clustalw 207s #### File Type= MSA Format= html Name= proteases_small.html 207s 207s # Command Line: t_coffee proteases_small.fasta -aln g0.aln g5.aln g10.aln g15.aln -output clustalw html [PROGRAM:T-COFFEE] 207s # T-COFFEE Memory Usage: Current= 390.841 Mb, Max= 406.172 Mb 207s # Results Produced with T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 207s # T-COFFEE is available from http://www.tcoffee.org 207s # Register on: https://groups.google.com/group/tcoffee/ 207s GSPLV---CG-DAVEGVVTWG--S 207s sp|P20160|CAP7_HUMAN -CT-G-VL--TR-RGG----ICNGDGGTPLV---CE-GLAHGVASFSL-G 207s sp|P80015|CAP7_PIG -CI-G-VF--SR-RGR----ISQGDRGTPLV---CN-GLAQGVASF-LRR 207s sp|P08246|ELNE_HUMAN -CT-L-VR--GR-QAG----VCFGDSGSPLV---CN-GLIHGIASF-VRG 207s sp|Q00871|CTRB1_PENVA -IVGDGVVCIDG-TGGK-S-TCNGDSGGPLN---LN-GMTYGITSFG--S 207s sp|P07338|CTRB1_RAT -IT-D-VMTCA-GASGV-S-SCMGDSGGPLVCQKDGVWTLAGIVSWG--S 207s sp|P00773|ELA1_RAT -V-KT-TMVCAG-GDGV-RSGCQGDSGGPLHCLVNGQYSVHGVTSFV--S 207s sp|Q91VE3|KLK7_MOUSE LLGKT-MLCAGIPDSKT-N-TCNGDSGGPLV---CN-DTLQGLVSWG--T 207s sp|Q6H321|KLK2_HORSE KMTEF-VLCATHRDDSG-S-ICLGDSGGALI---CD-GVFQGITSWG--Y 207s sp|P00757|KLKB4_MOUSE KVTDA-MLCAGEMDGGS-Y-TCEHDSGGPLI---CD-GILQGITSWG--P 207s sp|Q03238|GRAM_RAT VLTDS-MLCLKAGAKGQ-A-PCKGDSGGPLV---CGKGKVDGILSFS--S 207s * * .: .: : 207s 207s sp|Q06606|GRZ2_RAT -C-TGTL---PRVFTRISS-FIPWIQKT-MKVLQ-----------QS--- 207s sp|P08884|GRAE_MOUSE -N-RTIS---SGVFTKIVH-FLPWISRN-MKL--------------L--- 207s sp|P21844|MCPT5_MOUSE -R--N-AKP-PAVFTRISH-YRPWINKI-LRE--------------N--- 207s sp|O35205|GRAK_MOUSE -K-CGIAKK-PGIYTLLTKKYQTWIKSKLAPS-R-----------AH--- 207s sp|Q9Y5K2|KLK4_HUMAN AP-CGQVGV-PGVYTNLCK-FTEWIEKTVQA-S----------------- 207s sp|Q7YRZ7|GRAA_BOVIN K--CGNPQK-PGIYILLTKKHLNWIKKTIAGAI----------------- 207s sp|P29786|TRY3_AEDAE -G-CALPNL-PGVYARVST-VRQWIREV-SEV------------------ 207s sp|P35037|TRY3_ANOGA -G-CAMPGY-PGVYARVAV-VRDWVREN-SGA------------------ 207s sp|P03953|CFAD_MOUSE -RVCGNGKK-PGVYTRVSS-YRMWIE-NITNGNM-----------TS--- 207s sp|P20160|CAP7_HUMAN -P-CGR-G--PDFFTRVAL-FRDWIDGV-L----NNPGP-----GPA--- 207s sp|P80015|CAP7_PIG -R-FRR-S--SGFFTRVAL-FRNWIDSV-L----NNPP------------ 207s sp|P08246|ELNE_HUMAN -G-CASGLY-PDAFAPVAQ-FVNWIDSI-IQRSEDNPCPHPRDPDPASRT 207s sp|Q00871|CTRB1_PENVA SAGCEK-GY-PAAFTRVYY-YLDWIQQK--------T-----GVTP---- 207s sp|P07338|CTRB1_RAT -G-VCSTST-PAVYSRVTA-LMPWVQQI-LEA------------------ 207s sp|P00773|ELA1_RAT SM-GCNVSKKPTVFTRVSA-YISWMNNV-IAY--------------T--- 207s sp|Q91VE3|KLK7_MOUSE YP-CGQPND-PGVYTQVCK-YKRWVMETMKTHR----------------- 207s sp|Q6H321|KLK2_HORSE SE-CADFND-NFVFTKVMP-HLKWIKETIEKNS----------------- 207s sp|P00757|KLKB4_MOUSE EP-CGEPTE-PSVYTKLIK-FSSWIRETMANNP----------------- 207s sp|Q03238|GRAM_RAT KN-CTDIFK-PTVATAVAP-YSSWIRKV-IGRWS-----------PQPLT 207s : *: 207s 207s sp|Q06606|GRZ2_RAT - 207s sp|P08884|GRAE_MOUSE - 207s sp|P21844|MCPT5_MOUSE - 207s sp|O35205|GRAK_MOUSE - 207s sp|Q9Y5K2|KLK4_HUMAN - 207s sp|Q7YRZ7|GRAA_BOVIN - 207s sp|P29786|TRY3_AEDAE - 207s sp|P35037|TRY3_ANOGA - 207s sp|P03953|CFAD_MOUSE - 207s sp|P20160|CAP7_HUMAN - 207s sp|P80015|CAP7_PIG - 207s sp|P08246|ELNE_HUMAN H 207s sp|Q00871|CTRB1_PENVA - 207s sp|P07338|CTRB1_RAT N 207s sp|P00773|ELA1_RAT - 207s sp|Q91VE3|KLK7_MOUSE - 207s sp|Q6H321|KLK2_HORSE - 207s sp|P00757|KLKB4_MOUSE - 207s sp|Q03238|GRAM_RAT - 207s 207s 207s 207s 208s 208s PROGRAM: T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 208s -full_log S [0] 208s -genepred_score S [0] nsd 208s -run_name S [0] 208s -mem_mode S [0] mem 208s -extend D [1] 1 208s -extend_mode S [0] very_fast_triplet 208s -max_n_pair D [0] 10 208s -seq_name_for_quadruplet S [0] all 208s -compact S [0] default 208s -clean S [0] no 208s -do_self FL [0] 0 208s -do_normalise D [0] 1000 208s -template_file S [0] 208s -setenv S [0] 0 208s -export S [0] 0 208s -template_mode S [0] 208s -flip D [0] 0 208s -remove_template_file D [0] 0 208s -profile_template_file S [0] 208s -in S [0] 208s -seq S [0] 208s -aln S [0] 208s -method_limits S [0] 208s -method S [0] 208s -lib S [1] sample_aln1.tc_lib 208s -profile S [0] 208s -profile1 S [0] 208s -profile2 S [0] 208s -pdb S [0] 208s -relax_lib D [0] 1 208s -filter_lib D [0] 0 208s -shrink_lib D [0] 0 208s -out_lib W_F [0] no 208s -out_lib_mode S [0] primary 208s -lib_only D [0] 0 208s -outseqweight W_F [0] no 208s -seq_source S [0] ANY 208s -cosmetic_penalty D [0] 0 208s -gapopen D [0] 0 208s -gapext D [0] 0 208s -fgapopen D [0] 0 208s -fgapext D [0] 0 208s -nomatch D [0] 0 208s -newtree W_F [0] default 208s -tree W_F [0] NO 208s -usetree R_F [0] 208s -tree_mode S [0] nj 208s -distance_matrix_mode S [0] ktup 208s -distance_matrix_sim_mode S [0] idmat_sim1 208s -quicktree FL [0] 0 208s -outfile W_F [0] default 208s -maximise FL [1] 1 208s -output S [1] score_ascii html 208s -len D [0] 0 208s -infile R_F [1] sample_aln1.aln 208s -matrix S [0] default 208s -tg_mode D [0] 1 208s -profile_mode S [0] cw_profile_profile 208s -profile_comparison S [0] profile 208s -dp_mode S [0] linked_pair_wise 208s -ktuple D [0] 1 208s -ndiag D [0] 0 208s -diag_threshold D [0] 0 208s -diag_mode D [0] 0 208s -sim_matrix S [0] vasiliky 208s -transform S [0] 208s -extend_seq FL [0] 0 208s -outorder S [0] input 208s -inorder S [0] aligned 208s -seqnos S [0] off 208s -case S [0] keep 208s -cpu D [0] 0 208s -ulimit D [0] -1 208s -maxnseq D [0] -1 208s -maxlen D [0] -1 208s -sample_dp D [0] 0 208s -weight S [0] default 208s -seq_weight S [0] no 208s -align FL [1] 1 208s -mocca FL [0] 0 208s -domain FL [0] 0 208s -start D [0] 0 208s -len D [0] 0 208s -scale D [0] 0 208s -mocca_interactive FL [0] 0 208s -method_evaluate_mode S [0] default 208s -color_mode S [0] new 208s -aln_line_length D [0] 0 208s -evaluate_mode S [0] triplet 208s -get_type FL [0] 0 208s -clean_aln D [0] 0 208s -clean_threshold D [1] 1 208s -clean_iteration D [1] 1 208s -clean_evaluate_mode S [0] t_coffee_fast 208s -extend_matrix FL [0] 0 208s -prot_min_sim D [40] 40 208s -prot_max_sim D [90] 90 208s -prot_trim D [20] 20 208s -prot_min_cov D [40] 40 208s -pdb_type S [0] d 208s -pdb_min_sim D [35] 35 208s -pdb_max_sim D [100] 100 208s -pdb_min_cov D [50] 50 208s -pdb_blast_server W_F [0] EBI 208s -blast W_F [0] 208s -blast_server W_F [0] EBI 208s -pdb_db W_F [0] pdb 208s -protein_db W_F [0] uniref50 208s -method_log W_F [0] no 208s -struc_to_use S [0] 208s -cache W_F [0] use 208s -print_cache FL [0] 0 208s -align_pdb_param_file W_F [0] no 208s -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble 208s -external_aligner S [0] NO 208s -msa_mode S [0] tree 208s -et_mode S [0] et 208s -master S [0] no 208s -blast_nseq D [0] 0 208s -lalign_n_top D [0] 10 208s -iterate D [1] 0 208s -trim D [0] 0 208s -split D [0] 0 208s -trimfile S [0] default 208s -split D [0] 0 208s -split_nseq_thres D [0] 0 208s -split_score_thres D [0] 0 208s -check_pdb_status D [0] 0 208s -clean_seq_name D [0] 0 208s -seq_to_keep S [0] 208s -dpa_master_aln S [0] 208s -dpa_maxnseq D [0] 0 208s -dpa_min_score1 D [0] 208s -dpa_min_score2 D [0] 208s -dpa_keep_tmpfile FL [0] 0 208s -dpa_debug D [0] 0 208s -multi_core S [0] templates_jobs_relax_msa_evaluate 208s -n_core D [0] 1 208s -thread D [0] 1 208s -max_n_proc D [0] 0 208s -lib_list S [0] 208s -prune_lib_mode S [0] 5 208s -tip S [0] none 208s -rna_lib S [0] 208s -no_warning D [0] 0 208s -run_local_script D [0] 0 208s -proxy S [0] unset 208s -email S [0] 208s -clean_overaln D [0] 0 208s -overaln_param S [0] 208s -overaln_mode S [0] 208s -overaln_model S [0] 208s -overaln_threshold D [0] 0 208s -overaln_target D [0] 0 208s -overaln_P1 D [0] 0 208s -overaln_P2 D [0] 0 208s -overaln_P3 D [0] 0 208s -overaln_P4 D [0] 0 208s -exon_boundaries S [0] 208s -display D [0] 100 208s 208s INPUT FILES 208s Input File (S) sample_aln1.aln Format clustal_aln 208s Input File (L) sample_aln1.tc_lib 208s 208s Identify Master Sequences [no]: 208s 208s Master Sequences Identified 208s INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] 208s Input File sample_aln1.aln Seq 1cms Length 175 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq 1cms_1 Length 148 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq 2apr Length 178 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq 3app Length 174 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq 4ape Length 178 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq 4pep Length 174 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq hmgb_chite Length 74 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq hmgl_trybr Length 67 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq hmgl_wheat Length 79 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq hmgt_mouse Length 71 type PROTEIN Struct Unchecked 208s 208s Multi Core Mode: 1 processors: 208s 5 208s -tip S [0] none 208s -rna_lib S [0] 208s -no_warning D [0] 0 208s -run_local_script D [0] 0 208s -proxy S [0] unset 208s -email S [0] 208s -clean_overaln D [0] 0 208s -overaln_param S [0] 208s -overaln_mode S [0] 208s -overaln_model S [0] 208s -overaln_threshold D [0] 0 208s -overaln_target D [0] 0 208s -overaln_P1 D [0] 0 208s -overaln_P2 D [0] 0 208s -overaln_P3 D [0] 0 208s -overaln_P4 D [0] 0 208s -exon_boundaries S [0] 208s -display D [0] 100 208s 208s INPUT FILES 208s Input File (S) sample_aln1.aln Format clustal_aln 208s Input File (L) sample_aln1.tc_lib 208s 208s Identify Master Sequences [no]: 208s 208s Master Sequences Identified 208s INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] 208s Input File sample_aln1.aln Seq 1cms Length 175 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq 1cms_1 Length 148 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq 2apr Length 178 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq 3app Length 174 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq 4ape Length 178 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq 4pep Length 174 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq hmgb_chite Length 74 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq hmgl_trybr Length 67 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq hmgl_wheat Length 79 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq hmgt_mouse Length 71 type PROTEIN Struct Unchecked 208s 208s Multi Core Mode: 1 processors: 208s 208s --- Process Method/Library/Aln Ssample_aln1.aln 208s xxx Retrieved Ssample_aln1.aln 5 208s -tip S [0] none 208s -rna_lib S [0] 208s -no_warning D [0] 0 208s -run_local_script D [0] 0 208s -proxy S [0] unset 208s -email S [0] 208s -clean_overaln D [0] 0 208s -overaln_param S [0] 208s -overaln_mode S [0] 208s -overaln_model S [0] 208s -overaln_threshold D [0] 0 208s -overaln_target D [0] 0 208s -overaln_P1 D [0] 0 208s -overaln_P2 D [0] 0 208s -overaln_P3 D [0] 0 208s -overaln_P4 D [0] 0 208s -exon_boundaries S [0] 208s -display D [0] 100 208s 208s INPUT FILES 208s Input File (S) sample_aln1.aln Format clustal_aln 208s Input File (L) sample_aln1.tc_lib 208s 208s Identify Master Sequences [no]: 208s 208s Master Sequences Identified 208s INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] 208s Input File sample_aln1.aln Seq 1cms Length 175 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq 1cms_1 Length 148 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq 2apr Length 178 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq 3app Length 174 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq 4ape Length 178 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq 4pep Length 174 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq hmgb_chite Length 74 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq hmgl_trybr Length 67 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq hmgl_wheat Length 79 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq hmgt_mouse Length 71 type PROTEIN Struct Unchecked 208s 208s Multi Core Mode: 1 processors: 208s 208s --- Process Method/Library/Aln Ssample_aln1.aln 208s xxx Retrieved Ssample_aln1.aln 208s --- Process Method/Library/Aln Lsample_aln1.tc_lib 208s xxx Retrieved Lsample_aln1.tc_lib 208s 208s All Methods Retrieved 208s 208s MANUAL PENALTIES: gapopen=0 gapext=0 208s 208s Library Total Size: [2422] 208s 208s Library Relaxation: Multi_proc [1] 208s 208s ! [Relax Library][TOT= 10][ 0 %] ! [Relax Library][TOT= 10][ 20 %] ! [Relax Library][TOT= 10][ 30 %] ! [Relax Library][TOT= 10][ 40 %] ! [Relax Library][TOT= 10][ 50 %] ! [Relax Library][TOT= 10][ 60 %] ! [Relax Library][TOT= 10][ 70 %] ! [Relax Library][TOT= 10][ 80 %] ! [Relax Library][TOT= 10][ 90 %] ! [Relax Library][TOT= 10][100 %] 208s 208s ! [Final Evaluation][TOT= 217][ 0 %] ! [Final Evaluation][TOT= 217][ 1 %] ! [Final Evaluation][TOT= 217][ 2 %] ! [Final Evaluation][TOT= 217][ 3 %] ! [Final Evaluation][TOT= 217][ 4 %] ! [Final Evaluation][TOT= 217][ 5 %] ! [Final Evaluation][TOT= 217][ 6 %] ! [Final Evaluation][TOT= 217][ 7 %] ! [Final Evaluation][TOT= 217][ 8 %] ! [Final Evaluation][TOT= 217][ 9 %] ! [Final Evaluation][TOT= 217][ 10 %] ! [Final Evaluation][TOT= 217][ 11 %] ! [Final Evaluation][TOT= 217][ 12 %] ! [Final Evaluation][TOT= 217][ 13 %] ! [Final Evaluation][TOT= 217][ 14 %] ! [Final Evaluation][TOT= 217][ 15 %] ! [Final Evaluation][TOT= 217][ 16 %] ! 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[Final Evaluation][TOT= 217][ 95 %] ! [Final Evaluation][TOT= 217][ 96 %] ! [Final Evaluation][TOT= 217][ 97 %] ! [Final Evaluation][TOT= 217][ 98 %] ! [Final Evaluation][TOT= 217][ 99 %] ! [Final Evaluation][TOT= 217][100 %] 208s 208s 5 208s -tip S [0] none 208s -rna_lib S [0] 208s -no_warning D [0] 0 208s -run_local_script D [0] 0 208s -proxy S [0] unset 208s -email S [0] 208s -clean_overaln D [0] 0 208s -overaln_param S [0] 208s -overaln_mode S [0] 208s -overaln_model S [0] 208s -overaln_threshold D [0] 0 208s -overaln_target D [0] 0 208s -overaln_P1 D [0] 0 208s -overaln_P2 D [0] 0 208s -overaln_P3 D [0] 0 208s -overaln_P4 D [0] 0 208s -exon_boundaries S [0] 208s -display D [0] 100 208s 208s INPUT FILES 208s Input File (S) sample_aln1.aln Format clustal_aln 208s Input File (L) sample_aln1.tc_lib 208s 208s Identify Master Sequences [no]: 208s 208s Master Sequences Identified 208s INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] 208s Input File sample_aln1.aln Seq 1cms Length 175 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq 1cms_1 Length 148 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq 2apr Length 178 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq 3app Length 174 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq 4ape Length 178 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq 4pep Length 174 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq hmgb_chite Length 74 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq hmgl_trybr Length 67 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq hmgl_wheat Length 79 type PROTEIN Struct Unchecked 208s Input File sample_aln1.aln Seq hmgt_mouse Length 71 type PROTEIN Struct Unchecked 208s 208s Multi Core Mode: 1 processors: 208s 208s --- Process Method/Library/Aln Ssample_aln1.aln 208s xxx Retrieved Ssample_aln1.aln 208s --- Process Method/Library/Aln Lsample_aln1.tc_lib 208s xxx Retrieved Lsample_aln1.tc_lib 208s 208s All Methods Retrieved 208s 208s MANUAL PENALTIES: gapopen=0 gapext=0 208s 208s Library Total Size: [2422] 208s 208s Library Relaxation: Multi_proc [1] 208s 208s Relaxation Summary: [2422]--->[992] 208s 208s 208s 208s UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1 208s 208s 208s OUTPUT RESULTS 208s #### File Type= MSA Format= score_ascii Name= sample_aln1.score_ascii 208s #### File Type= MSA Format= html Name= sample_aln1.html 208s 208s # Command Line: t_coffee -infile sample_aln1.aln -lib sample_aln1.tc_lib -special_mode evaluate [PROGRAM:T-COFFEE] 208s # T-COFFEE Memory Usage: Current= 389.265 Mb, Max= 405.442 Mb 208s # Results Produced with T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 208s # T-COFFEE is available from http://www.tcoffee.org 208s # Register on: https://groups.google.com/group/tcoffee/ 211s CLUSTAL W (1.83) multiple sequence alignment 211s 211s sp|Q06606|GRZ2_RAT -------------------------------------------mflflff 211s sp|P08884|GRAE_MOUSE -------------------------m--------ppvlilltlllplgag 211s sp|P21844|MCPT5_MOUSE ------------------------mh--------lltlhllllllgsstk 211s sp|O35205|GRAK_MOUSE --------------------mrfssw--------alvslvagvymssecf 211s sp|Q9Y5K2|KLK4_HUMAN ---------------matagnpwgwf--------lgylilgvagslvsgs 211s sp|Q7YRZ7|GRAA_BOVIN -----------------mnipfpfsf--------ppaiclllipgvfpvs 211s sp|Q00871|CTRB1_PENVA migklslllvcvavasgnpaagkpwh--------wkspkplvdprihvna 211s sp|P08246|ELNE_HUMAN ----------------mtlgrrlacl--------flacvlpalllggtal 211s sp|P03953|CFAD_MOUSE --------------------mhssvy--------fvalvilgaavcaaqp 211s sp|Q91VE3|KLK7_MOUSE --------------------mgvwll--------slitvllslaletagq 211s sp|Q6H321|KLK2_HORSE ---------------------mwflv--------lcldlslgetgalppi 211s sp|Q03238|GRAM_RAT -------------------------l--------llllalktlwavgnrf 211s sp|P20160|CAP7_HUMAN -------------------mtrltvl--------allagllassragssp 211s sp|P07338|CTRB1_RAT --------------------maflwlvscfalvgatfgcgvptiqpvltg 211s sp|P00757|KLKB4_MOUSE ----------------------------------mwflilflalslggid 211s sp|P80015|CAP7_PIG -------------------------------------------------- 211s sp|P29786|TRY3_AEDAE ------mnqflfvsfcalldsakvsa--------------------atls 211s sp|P35037|TRY3_ANOGA -----misnkiaillavlvvavacaqarvaqqhrsvqalprflprpkydv 211s sp|P00773|ELA1_RAT -------------------mlrflvf--------aslvlyghstqdfpet 211s 211s 211s sp|Q06606|GRZ2_RAT lvailpvnteggeiiwgteskphsrpymafik---fy----dsnsephhc 211s sp|P08884|GRAE_MOUSE aeeii-----ggh-----vvkphsrpymafvk---svdiegnr----ryc 211s sp|P21844|MCPT5_MOUSE ageii-----ggt-----eciphsrpymayleivtse----ny-l--sac 211s sp|O35205|GRAK_MOUSE hteii-----ggr-----evqphsrpfmasiq---yr----sk----hic 211s sp|Q9Y5K2|KLK4_HUMAN csqii-----nge-----dcsphsqpwqaalv---me----ne----lfc 211s sp|Q7YRZ7|GRAA_BOVIN cegii-----ggn-----evaphtrrymalik--gl------k-----lc 211s sp|Q00871|CTRB1_PENVA tpriv-----ggv-----eatphswphqaalf---id----dm----yfc 211s sp|P08246|ELNE_HUMAN aseiv-----ggr-----rarphawpfmvslq---lr----gg----hfc 211s sp|P03953|CFAD_MOUSE rgril-----ggq-----eaaaharpymasvq---vn----gt----hvc 211s sp|Q91VE3|KLK7_MOUSE gerii-----dgy-----kckegshpwqvall---kg----nq----lhc 211s sp|Q6H321|KLK2_HORSE qsrii-----ggw-----ecekhskpwqvavy---hq----gh----fqc 211s sp|Q03238|GRAM_RAT eaqii-----ggr-----eavphsrpymvslq---nt----ks----hmc 211s sp|P20160|CAP7_HUMAN lldiv-----ggr-----karprqfpflasiq---nq----gr----hfc 211s sp|P07338|CTRB1_RAT lsriv-----nge-----daipgswpwqvslq---dk---tgf----hfc 211s sp|P00757|KLKB4_MOUSE aappv-----qsq-----vdcensqpwhvavy---rf----nk----yqc 211s sp|P80015|CAP7_PIG ---iv-----ggr-----raqpqefpflasiq---kq----gr----pfc 211s sp|P29786|TRY3_AEDAE sgriv-----ggf-----qidiaevphqvslq--rsg-----r----hfc 211s sp|P35037|TRY3_ANOGA ghriv-----ggf-----eidvsetpyqvslq--yfn-----s----hrc 211s sp|P00773|ELA1_RAT narvv-----gga-----earrnswpsqislq---ylsggswy----htc 211s : . : * 211s 211s sp|Q06606|GRZ2_RAT ggflvakdivmtaahc----ng-------r----nik---vtlgahni-- 211s sp|P08884|GRAE_MOUSE ggflvqddfvltaahc----rn-------r----tmt---vtlgahni-- 211s sp|P21844|MCPT5_MOUSE sgflirrnfvltaahc----ag-------r----sit---vllgahnk-- 211s sp|O35205|GRAK_MOUSE ggvlihpqwvltaahc----y-swfprg-h----spt---vvlgahsl-- 211s sp|Q9Y5K2|KLK4_HUMAN sgvlvhpqwvlsaahc----fq-------n----syt---iglglhsl-e 211s sp|Q7YRZ7|GRAA_BOVIN agalikenwvltaahc----dlk------g----npq---vilgahst-- 211s sp|Q00871|CTRB1_PENVA ggslissewvltaahc----md-------g--agfv---evvlgahni-- 211s sp|P08246|ELNE_HUMAN gatliapnfvmsaahc----van------v----nvravrvvlgahnl-- 211s sp|P03953|CFAD_MOUSE ggtlldeqwvlsaahc----mdgvtddd------svq---vllgahsl-- 211s sp|Q91VE3|KLK7_MOUSE ggvlvdkywvltaahc----km-------g----qyq---vqlgsdki-- 211s sp|Q6H321|KLK2_HORSE ggvlvhpqwvltaahc----ms-------d----dyq---iwlgrhnl-- 211s sp|Q03238|GRAM_RAT ggvlvhqkwvltaahc----lse----plq----qlk---lvfglhslhd 211s sp|P20160|CAP7_HUMAN ggaliharfvmtaasc----fqs---qnpg----vs---tvvlgaydl-- 211s sp|P07338|CTRB1_RAT ggslisedwvvtaahc----gvk------ts----dv---vvagefdq-- 211s sp|P00757|KLKB4_MOUSE ggvlldrnwvltaahc----yn-------d----kyq---vwlgknnf-- 211s sp|P80015|CAP7_PIG agalvhprfvltaasc----frg---knsg----sa---svvlgaydl-- 211s sp|P29786|TRY3_AEDAE ggsiisprwvltrahc----tt-------ntdpaayt---iragstd--- 211s sp|P35037|TRY3_ANOGA ggsvlnskwiltaahctvnlqp-------ss----la---vrlgssr--- 211s sp|P00773|ELA1_RAT ggtlirrnwvmtaahc----vss------q----mtf--rvvvgdhnl-- 211s .. :: ::: * * : * 211s 211s sp|Q06606|GRZ2_RAT -kkqe-ntq-visvvkakphenydr-----------dsh-----fndiml 211s sp|P08884|GRAE_MOUSE -kake-etqqiipvakaiphpdyna-----------taf-----fsdiml 211s sp|P21844|MCPT5_MOUSE -tske-dtwqklevekqflhpkyde-----------nlv-----vhdiml 211s sp|O35205|GRAK_MOUSE -skne-pmkqtfeikkfipfsrlqs-----------gsa-----shdiml 211s sp|Q9Y5K2|KLK4_HUMAN ad-qe-pgsqmveaslsvrhpeyn-----------rpll-----andlml 211s sp|Q7YRZ7|GRAA_BOVIN -shke-kldqvfsikkaipypcfdp-----------qtf-----egdlql 211s sp|Q00871|CTRB1_PENVA -rqnea-sqvsitstdffthenwns-----------wll-----tndial 211s sp|P08246|ELNE_HUMAN -srre-ptrqvfavqrifen-gydp-----------vnl-----lndivi 211s sp|P03953|CFAD_MOUSE -sape-pykrwydvqsvvphpgsrp-----------dsl-----eddlil 211s sp|Q91VE3|KLK7_MOUSE -gdq---saqkikatksfrhpgys-----------tkth-----vndiml 211s sp|Q6H321|KLK2_HORSE -sede-dtaqfhqvsdsfldpqfdlsllkkkylrpyddi-----shdlml 211s sp|Q03238|GRAM_RAT pqdp----gltfyikqaikhpgynl------------ky-----endlal 211s sp|P20160|CAP7_HUMAN -rrrerqsrqtfsissmsen-gydp-----------qqn-----lndlml 211s sp|P07338|CTRB1_RAT -gsde-eniqvlkiaqvfknpkf----------------nmftvrnditl 211s sp|P00757|KLKB4_MOUSE -lede-psdqhrlvskaiphpdfnmsllnehtpqpeddy-----sndlml 211s sp|P80015|CAP7_PIG -rqqe-qsrqtfsirsisqn-gydp-----------rqn-----lndvll 211s sp|P29786|TRY3_AEDAE -rtng-gi--ivkvksviphpqyn---------gdtyny-------dfsl 211s sp|P35037|TRY3_ANOGA -hasg-gt--vvrvarvlehpnyd-----------dstid-----ydfsl 211s sp|P00773|ELA1_RAT -sqnd-gteqyvsvqkimvhptwns-----------nnv---aagydial 211s *. : 211s 211s sp|Q06606|GRZ2_RAT lklerkaqlngvvktia-lp--rsq-dw-vkpgqvctvagwgr-----la 211s sp|P08884|GRAE_MOUSE lkleskakrtkavrplk-lp--rpn-ar-vkpgdvcsvagwgsrsindt- 211s sp|P21844|MCPT5_MOUSE lklkekakltlgvgtlp-ls--an-fnf-ippgrmcravgwgr-----tn 211s sp|O35205|GRAK_MOUSE iklrtaaelnknvqllh-lg--s--kny-lrdgtkcqvtgwgt-----tk 211s sp|Q9Y5K2|KLK4_HUMAN ikldesvsesdtirsis-ia--s---qc-ptagnsclvsgwgl-----la 211s sp|Q7YRZ7|GRAA_BOVIN lqlegkatmtkavgilq-lp--rt-edd-vkphtkchvagwgs-----tk 211s sp|Q00871|CTRB1_PENVA irlpspvslnsniktvk-lp--s---sd-vsvgttvtptgwgr-----ps 211s sp|P08246|ELNE_HUMAN lqlngsatinanvqvaq-lp--aq-grr-lgngvqclamgwgl-----lg 211s sp|P03953|CFAD_MOUSE fklsqnaslgphvrplplqy-----edkevepgtlcdvagwgv-----vt 211s sp|Q91VE3|KLK7_MOUSE vrldepvkmsskveavq-lp--e---hc-eppgtsctvsgwgt-----tt 211s sp|Q6H321|KLK2_HORSE lrlaqparitdavkild-lp--t---qe-pklgstcytsgwgl-----is 211s sp|Q03238|GRAM_RAT lkldgrvkpsknvkpla-lp--rkprdk-paegsrcstagwgi-----th 211s sp|P20160|CAP7_HUMAN lqldreanltssvtilp-lp--lq-nat-veagtrcqvagwgs-----qr 211s sp|P07338|CTRB1_RAT lklatpaqfsetvsavc-lp--nvd-dd-fppgtvcattgwgk-----tk 211s sp|P00757|KLKB4_MOUSE lrlskpaditdvvkpit-lp--t---ee-pklgstclasgwgs-----tt 211s sp|P80015|CAP7_PIG lqldrearltpsvalvp-lp--pq-nat-veagtncqvagwgt-----qr 211s sp|P29786|TRY3_AEDAE leldesigfsrsieaia-lpdase---t-vadgamctvsgwgd-----t- 211s sp|P35037|TRY3_ANOGA meleseltfsdvvqpvs-lp--dqd-ea-vedgtmtivsgwgn-----tq 211s sp|P00773|ELA1_RAT lrlaqsvtlnnyvqlav-lp--qe-gti-lannnpcyitgwgr-----tr 211s ..* : *** 211s 211s sp|Q06606|GRZ2_RAT n-c-t--s-snt---lqevnlevqkgqkcqd----mse--dynd-siqlc 211s sp|P08884|GRAE_MOUSE ----------kasarlreaqlviqedeeckk----rfr--hy-tetteic 211s sp|P21844|MCPT5_MOUSE vne-p--a-sdt---lqevkmrlqepqackh-----ft--sfrh-nsqlc 211s sp|O35205|GRAK_MOUSE pdllt--a-sdt---lrevtvtiisrkrcns--qsyynhkpvit-kdmic 211s sp|Q9Y5K2|KLK4_HUMAN --ngr--m-ptv---lqcvnvsvvseevcsk----lyd--plyh-psmfc 211s sp|Q7YRZ7|GRAA_BOVIN kdacq--m-sna---lreanvtvidrkicnd--aqhynfnpvid-lsmic 211s sp|Q00871|CTRB1_PENVA dsasg--i-sdv---lrqvnvpvmtnadcds----vyg---ivg-dgvvc 211s sp|P08246|ELNE_HUMAN rnr-g--i-asv---lqelnvtvvt-slc--------------r-rsnvc 211s sp|P03953|CFAD_MOUSE hag-r--r-pdv---lhqlrvsimnrttcnl--rtyhd--gvvt-inmmc 211s sp|Q91VE3|KLK7_MOUSE spdvt--f-psd---lmcsdvklissreckk----vyk--dllg-ktmlc 211s sp|Q6H321|KLK2_HORSE tftnr--g-sgt---lqcvelrlqsnekcar----ayp--ekmt-efvlc 211s sp|Q03238|GRAM_RAT qrg-q--l-aks---lqeldlrlldtrmcnn--srfwn--gvlt-dsmlc 211s sp|P20160|CAP7_HUMAN sgg-r--l-srf---prfvnvtvtpedqc--------------r-pnnvc 211s sp|P07338|CTRB1_RAT y---nalktpek---lqqaalpivseadck----kswg--skit-dvmtc 211s sp|P00757|KLKB4_MOUSE pikfk--y-pdd---lqcvnlkllpnedcdk----ahe--mkvt-damlc 211s sp|P80015|CAP7_PIG lr--r--lfsrf---prvlnvtvt-snpc--------------l-prdmc 211s sp|P29786|TRY3_AEDAE knv-f---emnt--llravnvpsynqaecaaalvnvvp----vt-eqmic 211s sp|P35037|TRY3_ANOGA sa--a---esna--ilraanvptvnqkect----iaysssggit-drmlc 211s sp|P00773|ELA1_RAT tng-q--l-sqt---lqqaylpsvdysicss--ssywg--stvk-ttmvc 211s : * * 211s 211s sp|Q06606|GRZ2_RAT vg--npse--g--k--atgkgdsggpfvcd----g--vaqgivsyrl-c- 211s sp|P08884|GRAE_MOUSE ag--dlkk--i--k--tpfkgdsggplvcd----n--kaygllayak-n- 211s sp|P21844|MCPT5_MOUSE vg--npkk--m--q--nvykgdsggpllca----g--iaqgiasyvh-r- 211s sp|O35205|GRAK_MOUSE ag--d--a--r--gqkdsckgdsggplick----g--ifhalvsqgy-k- 211s sp|Q9Y5K2|KLK4_HUMAN ag--g--g--qdqk--dscngdsggplicn------gylqglvsfgk--a 211s sp|Q7YRZ7|GRAA_BOVIN ag--g--r--k--geddscegdsgsplicd------nvfrgvtsfg---- 211s sp|Q00871|CTRB1_PENVA id--g--t--g--g-kstcngdsggplnln------gmtygitsfgs-sa 211s sp|P08246|ELNE_HUMAN tl--v--rgrq--a--gvcfgdsgsplvcn------glihgiasfvr-g- 211s sp|P03953|CFAD_MOUSE ae--s--n--r--r--dtcrgdsgsplvcg----d--avegvvtwgs-r- 211s sp|Q91VE3|KLK7_MOUSE ag--i--p--dskt--ntcngdsggplvcn------dtlqglvswgt--y 211s sp|Q6H321|KLK2_HORSE athrd--d----sg--siclgdsggalicd------gvfqgitswgy--s 211s sp|Q03238|GRAM_RAT lk--agak--g--q--apckgdsggplvcg----k-gkvdgilsfss-k- 211s sp|P20160|CAP7_HUMAN tg--v--ltrr--g--gicngdggtplvce------glahgvasfsl-g- 211s sp|P07338|CTRB1_RAT ag--a--s--g--v--sscmgdsggplvcqkd--gvwtlagivswgs-g- 211s sp|P00757|KLKB4_MOUSE ag--e--m--dggs--ytcehdsggplicd------gilqgitswgp--e 211s sp|P80015|CAP7_PIG ig--v--fsrr--g--risqgdrgtplvcn------glaqgvasflr-r- 211s sp|P29786|TRY3_AEDAE ag--y--aa-g--g-kdscqgdsggplvsg------dklvgvvswgk-g- 211s sp|P35037|TRY3_ANOGA ag--y--krgg--k--dacqgdsggplvvd------gklvgvvswgf-g- 211s sp|P00773|ELA1_RAT ag--g--d-gv--r--sgcqgdsggplhclvngqy--svhgvtsfvssm- 211s * * .: .: : 211s 211s sp|Q06606|GRZ2_RAT tg-t----l-p-rvftriss-fipwiqktmk--vlqqs------------ 211s sp|P08884|GRAE_MOUSE ---rti-ss-g--vftkivh-flpwisrnmkl-l---------------- 211s sp|P21844|MCPT5_MOUSE na-k------ppavftrish-yrpwinkilren----------------- 211s sp|O35205|GRAK_MOUSE -c-g-i-akkp-giytlltkkyqtwiksklapsrah-------------- 211s sp|Q9Y5K2|KLK4_HUMAN pcgq-v-gv-p-gvytnlck-ftewiektvqa-s---------------- 211s sp|Q7YRZ7|GRAA_BOVIN kc-g-n-pqkp-giyilltkkhlnwikktiagai---------------- 211s sp|Q00871|CTRB1_PENVA gc-e-k-gy-p-aaftrvyy-yldwiqqktgvtp---------------- 211s sp|P08246|ELNE_HUMAN gcas-g-ly-p-dafapvaq-fvnwidsiiq-rsednpcphprdpdpasr 211s sp|P03953|CFAD_MOUSE vc-g-n-gkkp-gvytrvss-yrmwienitngnmts-------------- 211s sp|Q91VE3|KLK7_MOUSE pcgq-p-nd-p-gvytqvck-ykrwvmetmkthr---------------- 211s sp|Q6H321|KLK2_HORSE ec-a-d-fndn-fvftkvmp-hlkwiketiekns---------------- 211s sp|Q03238|GRAM_RAT nc-tdi-fk-p-tvatavap-ysswirkvigr-wspqplt---------- 211s sp|P20160|CAP7_HUMAN pc-g-r--g-p-dfftrval-frdwidgvlnnpgpgpa------------ 211s sp|P07338|CTRB1_RAT vc-s-t-st-p-avysrvta-lmpwvqqilean----------------- 211s sp|P00757|KLKB4_MOUSE pc-g-epte-p-svytklik-fsswiretmannp---------------- 211s sp|P80015|CAP7_PIG rf-r-r--s-s-gfftrval-frnwidsvlnnpp---------------- 211s sp|P29786|TRY3_AEDAE -c-a-l-pnlp-gvyarvst-vrqwirevsev------------------ 211s sp|P35037|TRY3_ANOGA ca-m-p-gy-p-gvyarvav-vrdwvrensga------------------ 211s sp|P00773|ELA1_RAT gc-nvs-kk-p-tvftrvsa-yiswmnnviayt----------------- 211s : *: 211s 211s sp|Q06606|GRZ2_RAT -- 211s sp|P08884|GRAE_MOUSE -- 211s sp|P21844|MCPT5_MOUSE -- 211s sp|O35205|GRAK_MOUSE -- 211s sp|Q9Y5K2|KLK4_HUMAN -- 211s sp|Q7YRZ7|GRAA_BOVIN -- 211s sp|Q00871|CTRB1_PENVA -- 211s sp|P08246|ELNE_HUMAN th 211s sp|P03953|CFAD_MOUSE -- 211s sp|Q91VE3|KLK7_MOUSE -- 211s sp|Q6H321|KLK2_HORSE -- 211s sp|Q03238|GRAM_RAT -- 211s sp|P20160|CAP7_HUMAN -- 211s sp|P07338|CTRB1_RAT -- 211s sp|P00757|KLKB4_MOUSE -- 211s sp|P80015|CAP7_PIG -- 211s sp|P29786|TRY3_AEDAE -- 211s sp|P35037|TRY3_ANOGA -- 211s sp|P00773|ELA1_RAT -- 211s 211s 211s 211s 211s CLUSTAL W (1.83) multiple sequence alignment 211s 211s hmgb_chite AD---KPKRPLSaY------M---------------LWLNSARESI---- 211s hmgt_mouse K-----PKRPRSAY------N---------------IYVSESFQEA---- 211s hmgl_wheat DP--NKPKRAPSAF------F---------------VFMGEFREEF---- 211s hmgl_trybr KKDSNAPKRAMTSF------M---------------FFSSDFRSKH---- 211s 1cms GE---VASVPLTNY------LDSQYFGKIYLGTPPQEFTVLFDTGSSDFW 211s 4pep -----IGDEPLENY------LDTEYFGTIGIGTPAQDFTVIFDTGSSNLW 211s 4ape STG-SATTTPIDS-------LDDAYITPVQIGTPAQTLNLDFDTGSSDLW 211s 3app AASGVATNTPTA--------NDEEYITPVTIGG--TTLNLNFDTGSADLW 211s 2apr AG---VGTVPMTDYG-----NDIEYYGQVTIGTPGKKFNLDFDTGSSDLW 211s 1cms_1 YTG-SLHWVPVTVQQYWQFTVDSVTISGVVVACEG-GCQAILDTGTSKLV 211s . 211s 211s hmgb_chite --------------KRENPDF-KVTEVAK-KGGELWR------------- 211s hmgt_mouse ------------------KDD-SAQGKLK-LVNEAWK------------- 211s hmgl_wheat --------------KQKNPKNKSVAAVGK-AAGERWK------------- 211s hmgl_trybr ------------------SDL-SIVEMSK-AAGAAWK------------- 211s 1cms VPSIYCKSNACKNHQRFDPRKSS---TFQ-NLGKPLSIHYGTGS-MQGIL 211s 4pep VPSVYCSSLACSDHNQFNPDDSS---TFE-ATSQELSITYGTGS-MTGIL 211s 4ape VFSSETTASEVDGQTIYTPSKST---TAKLLSGATWSISYGDGSSSSGDV 211s 3app VFSTELPASQQSGHSVYNPSA-----TGKELSGYTWSISYGDGSSASGNV 211s 2apr IASTLCTN-CGSGQTKYDPNQSS---TYQ-ADGRTWSISYGDGSSASGIL 211s 1cms_1 GPSS---------------------------------------------- 211s 211s 211s hmgb_chite -----------------GLK--DKSEWE---------------------- 211s hmgt_mouse -----------------NLSPEEKQAYI---------------------- 211s hmgl_wheat -----------------SLSESEKAPYV---------------------- 211s hmgl_trybr -----------------ELGPEERKVYE---------------------- 211s 1cms GYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFD--------GILGMAYP 211s 4pep GYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFD--------GILGLAYP 211s 4ape YTDTVSVGGLTVTGQAVESAKKVSSSFTEDSTID--------GLLGLAFS 211s 3app FTDSVTVGGVTAHGQAVQAAQQISAQFQQDTNND--------GLLGLAFS 211s 2apr AKDNVNLGGLLIKGQTIELAKREAASFAS-GPND--------GLLGLGFD 211s 1cms_1 --------DILNIQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYP 211s 211s 211s hmgb_chite ------------------------AKA--AT------AKQNYIRALQEYE 211s hmgt_mouse ------------------------QLA--KD------DRIRYDNEMKSWE 211s hmgl_wheat ------------------------AKA--NK------LKGEYNKAIAAYN 211s hmgl_trybr ------------------------EMA--EK------DKERYKREM---- 211s 1cms SLASEY---SIPV--------F--DNMMNRH----LVAQDLFSVYM-DRN 211s 4pep SISASG---ATPV--------F--DNLWDQG----LVSQDLFSVYL-SSN 211s 4ape TLNTVSPTQQKTF--------F--DNA--KA----SLDSPVFTADL-GYH 211s 3app SINTVQPQSQTTF--------F--DTV--KS----SLAQPLFAVAL-KHQ 211s 2apr TITTVRG--VKTP--------M--DNLISQG----LISRPIFGVYL-GKA 211s 1cms_1 LTPSAY---TS-QDQGFCTSGFQSENHSQKWILGDVFIREYYSVFD-RAN 211s : 211s 211s hmgb_chite R--NG-----------G 211s hmgt_mouse E--QM--A--------E 211s hmgl_wheat K--GE--S--------A 211s hmgl_trybr ----------------- 211s 1cms G--QESMLTLGAIDPSY 211s 4pep DD-SGSVVLLGGIDSSY 211s 4ape ---APGTYNFGFIDTTA 211s 3app ---QPGVYDFGFIDSSK 211s 2apr KNGGGGEYIFGGYDSTK 211s 1cms_1 N--LVGLA--KAI---- 211s 211s 211s 211s 212s CLUSTAL W (1.83) multiple sequence alignment 212s 212s hmgb_chite ad---kpkrplsay------m---------------lwlnsaresi---- 212s hmgt_mouse k-----pkrprsay------n---------------iyvsesfqea---- 212s hmgl_wheat dp--nkpkrapsaf------f---------------vfmgefreef---- 212s hmgl_trybr kkdsnapkramtsf------m---------------ffssdfrskh---- 212s 1cms ge---vasvpltny------ldsqyfgkiylgtppqeftvlfdtgssdfw 212s 4pep -----igdepleny------ldteyfgtigigtpaqdftvifdtgssnlw 212s 4ape stg-satttpids-------lddayitpvqigtpaqtlnldfdtgssdlw 212s 3app aasgvatntpta--------ndeeyitpvtigg--ttlnlnfdtgsadlw 212s 2apr ag---vgtvpmtdyg-----ndieyygqvtigtpgkkfnldfdtgssdlw 212s 1cms_1 ytg-slhwvpvtvqqywqftvdsvtisgvvvaceg-gcqaildtgtsklv 212s . 212s 212s hmgb_chite --------------krenpdf-kvtevak-kggelwr------------- 212s hmgt_mouse ------------------kdd-saqgklk-lvneawk------------- 212s hmgl_wheat --------------kqknpknksvaavgk-aagerwk------------- 212s hmgl_trybr ------------------sdl-sivemsk-aagaawk------------- 212s 1cms vpsiycksnacknhqrfdprkss---tfq-nlgkplsihygtgs-mqgil 212s 4pep vpsvycsslacsdhnqfnpddss---tfe-atsqelsitygtgs-mtgil 212s 4ape vfssettasevdgqtiytpskst---takllsgatwsisygdgssssgdv 212s 3app vfstelpasqqsghsvynpsa-----tgkelsgytwsisygdgssasgnv 212s 2apr iastlctn-cgsgqtkydpnqss---tyq-adgrtwsisygdgssasgil 212s 1cms_1 gpss---------------------------------------------- 212s 212s 212s hmgb_chite -----------------glk--dksewe---------------------- 212s hmgt_mouse -----------------nlspeekqayi---------------------- 212s hmgl_wheat -----------------slsesekapyv---------------------- 212s hmgl_trybr -----------------elgpeerkvye---------------------- 212s 1cms gydtvtvsnivdiqqtvglstqepgdvftyaefd--------gilgmayp 212s 4pep gydtvqvggisdtnqifglsetepgsflyyapfd--------gilglayp 212s 4ape ytdtvsvggltvtgqavesakkvsssftedstid--------gllglafs 212s 3app ftdsvtvggvtahgqavqaaqqisaqfqqdtnnd--------gllglafs 212s 2apr akdnvnlggllikgqtielakreaasfas-gpnd--------gllglgfd 212s 1cms_1 --------dilniqqaigatqnqygefdidcdnlsymptvvfeingkmyp 212s 212s 212s hmgb_chite ------------------------aka--at------akqnyiralqeye 212s hmgt_mouse ------------------------qla--kd------drirydnemkswe 212s hmgl_wheat ------------------------aka--nk------lkgeynkaiaayn 212s hmgl_trybr ------------------------ema--ek------dkerykrem---- 212s 1cms slasey---sipv--------f--dnmmnrh----lvaqdlfsvym-drn 212s 4pep sisasg---atpv--------f--dnlwdqg----lvsqdlfsvyl-ssn 212s 4ape tlntvsptqqktf--------f--dna--ka----sldspvftadl-gyh 212s 3app sintvqpqsqttf--------f--dtv--ks----slaqplfaval-khq 212s 2apr tittvrg--vktp--------m--dnlisqg----lisrpifgvyl-gka 212s 1cms_1 ltpsay---ts-qdqgfctsgfqsenhsqkwilgdvfireyysvfd-ran 212s : 212s 212s hmgb_chite r--ng-----------g 212s hmgt_mouse e--qm--a--------e 212s hmgl_wheat k--ge--s--------a 212s hmgl_trybr ----------------- 212s 1cms g--qesmltlgaidpsy 212s 4pep dd-sgsvvllggidssy 212s 4ape ---apgtynfgfidtta 212s 3app ---qpgvydfgfidssk 212s 2apr knggggeyifggydstk 212s 1cms_1 n--lvgla--kai---- 212s 212s 212s 212s 212s >sp|P08311|CATG_HUMAN Cathepsin G precursor (EC 3.4.21.20) (CG) - Homo sapiens (Human). 212s MQPLLLLLAFLLPTGAEAGEIIGGRESRPHSRPYMAYLQIQSPAGQSRCG 212s GFLVREDFVLTAAHCWGSNINVTLGAHNIQRRENTQQHITARRAIRHPQY 212s NQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRV 212s SMRRGTDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKGD 212s SGGPLLCNNVAHGIVSYGKSSGVPPEVFTRVSSFLPWIRTTMRSFKLLDQ 212s METPL 212s >sp|P28293|CATG_MOUSE Cathepsin G precursor (EC 3.4.21.20) (Vimentin-specific protease) (VSP) - Mus musculus (Mouse). 212s MQPLLLLLTFILLQGDEAGKIIGGREARPHSYPYMAFLLIQSPEGLSACG 212s GFLVREDFVLTAAHCLGSSINVTLGAHNIQMRERTQQLITVLRAIRHPDY 212s NPQNIRNDIMLLQLRRRARRSGSVKPVALPQASKKLQPGDLCTVAGWGRV 212s SQSRGTNVLQEVQLRVQMDQMCANRFQFYNSQTQICVGNPRERKSAFRGD 212s SGGPLVCSNVAQGIVSYGSNNGNPPAVFTKIQSFMPWIKRTMRRFAPRYQ 212s RPANSLSQAQT 212s >sp|P80931|MCT1A_SHEEP Mast cell protease 1A precursor (EC 3.4.21.-) (SMCP-1A) - Ovis aries (Sheep). 212s MVLFLLLVALLSPAGEAGKIIGGHEAKPHSRPYMAFLQIKISGKSYRCGG 212s FLVHEDFVLTAAHCLGSSISVTLGAHNIVDRERTQQVIQVRRAIPHPHYN 212s DKTLANDIMLLQLTRKAEMSDAVSPINLPRSLEKVKPGMMCSVAGWGQLG 212s VNMPSADKLQEVNLEVQSEEECIARFKNYIPITQICAGDSTKRKNSFSGD 212s SGGPLVCNGVAQGIVSYGKDDGTTPDVYTRISSFLSWIQRTMRRY 212s >sp|O46683|MCPT3_SHEEP Mast cell protease 3 precursor (EC 3.4.21.-) (SMCP-3) - Ovis aries (Sheep). 212s MVLFLLLVALLSPAGEAGKIIGGHEAKPHSRPYMAFLQFKISGKSYICGG 212s FLVREDFVLTAAHCLGSSINVTLGAHTITDQERTQQVIQVRRAIPHPDYN 212s DETCANDIMLLQLTRKAEMTDAVSLINLPRSLEKVKPGMMCSVAGWGQLG 212s VNMPSADKLQEVDLEVQREEKCIARFKDYIPVTQICAGDPSKRKDSFLGD 212s SGGPLVCDGVAQGIVSYGKDDGTTPNVYTRISSFLSWIQRTMRQYKNQGS 212s A 212s >sp|P80219|DDN1_BOVIN Duodenase-1 (EC 3.4.21.-) (Duodenase I) (Duodenum serine protease) - Bos taurus (Bovine). 212s IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLGSIN 212s VTLGAHNIMERERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADIT 212s DKVSPINLPRSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEE 212s KCIARFKNYIPFTQICAGDPSKRRNSFSGDSGGPLVCNGVAQGIVSYGKN 212s DGTTPDVYTRISSFLPWIKRVMYLFK 212s >sp|P20718|GRAH_HUMAN Granzyme H precursor (EC 3.4.21.-) (Cytotoxic T-lymphocyte proteinase) (Cathepsin G-like 2) (CTSGL2) (CCP-X) (Cytotoxic serine protease C) (CSP-C) - Homo sapiens (Human). 212s MQPFLLLLAFLLTPGAGTEEIIGGHEAKPHSRPYMAFVQFLQEKSRKRCG 212s GILVRKDFVLTAAHCQGSSINVTLGAHNIKEQERTQQFIPVKRPIPHPAY 212s NPKNFSNDIMLLQLERKAKWTTAVRPLRLPSSKAQVKPGQLCSVAGWGYV 212s SMSTLATTLQEVLLTVQKDCQCERLFHGNYSRATEICVGDPKKTQTGFKG 212s DSGGPLVCKDVAQGILSYGNKKGTPPGVYIKVSHFLPWIKRTMKRL 212s >sp|P10144|GRAB_HUMAN Granzyme B precursor (EC 3.4.21.79) (T-cell serine protease 1-3E) (Cytotoxic T-lymphocyte proteinase 2) (Lymphocyte protease) (SECT) (Granzyme-2) (Cathepsin G-like 1) (CTSGL1) (CTLA-1) (Fragmentin-2) (Human lymphocyte protein) (HLP) 212s MQPILLLLAFLLLPRADAGEIIGGHEAKPHSRPYMAYLMIWDQKSLKRCG 212s GFLIQDDFVLTAAHCWGSSINVTLGAHNIKEQEPTQQFIPVKRPIPHPAY 212s NPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQT 212s APLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTIELCVGDPEIKKTSFK 212s GDSGGPLVCNKVAQGIVSYGRNNGMPPRACTKVSSFVHWIKKTMKRY 212s >sp|P04187|GRAB_MOUSE Granzyme B(G,H) precursor (EC 3.4.21.79) (Cytotoxic cell protease 1) (CCP1) (CTLA-1) (Fragmentin-2) - Mus musculus (Mouse). 212s MKILLLLLTLSLASRTKAGEIIGGHEVKPHSRPYMALLSIKDQQPEAICG 212s GFLIREDFVLTAAHCEGSIINVTLGAHNIKEQEKTQQVIPMVKCIPHPDY 212s NPKTFSNDIMLLKLKSKAKRTRAVRPLNLPRRNVNVKPGDVCYVAGWGRM 212s APMGKYSNTLQEVELTVQKDRECESYFKNRYNKTNQICAGDPKTKRASFR 212s GDSGGPLVCKKVAAGIVSYGYKDGSPPRAFTKVSSFLSWIKKTMKSS 212s >sp|P18291|NKP1_RAT Natural killer cell protease 1 precursor (EC 3.4.21.-) (RNKP-1) (Fragmentin) (Granzyme B) - Rattus norvegicus (Rat). 212s MKLLLLLLSFSLAPKTEAGEIIGGHEAKPHSRPYMAYLQIMDEYSGSKKC 212s GGFLIREDFVLTAAHCSGSKINVTLGAHNIKEQEKMQQIIPVVKIIPHPA 212s YNSKTISNDIMLLKLKSKAKRSSAVKPLNLPRRNVKVKPGDVCYVAGWGK 212s LGPMGKYSDTLQEVELTVQEDQKCESYLKNYFDKANEICAGDPKIKRASF 212s RGDSGGPLVCKKVAAGIVSYGQNDGSTPRAFTKVSTFLSWIKKTMKKS 212s >sp|Q06605|GRZ1_RAT Granzyme-like protein 1 precursor (EC 3.4.21.-) (GLP-1) (Granzyme-like protein I) (GLP I) - Rattus norvegicus (Rat). 212s MNLLLLLLTVSLAPTTEAAEIIGGHEADPHSRPYMAYLQYKNEDSRDTIC 212s GGFLIREDFVLTAAHCSGSKINVTLGAHNIKEQEKTQQVIPVVKIIPHPA 212s YNAKTISNDIMLLKLKSKAKRTRAVKTLSLPRSNFKVKPGDVCYVAGWGK 212s LGPMGKFPDKLQEVELTVQEDQECETYLKNAYDKANQICAGDPKIKCASF 212s QGDSGGPLVCKKVAAGIVSYGRKDGSTPRAFTKVSTFLSWIEETMKKS 212s >sp|P21812|MCPT4_MOUSE Mast cell protease 4 precursor (EC 3.4.21.-) (MMCP-4) (Serosal mast cell protease) (MSMCP) (Myonase) - Mus musculus (Mouse). 212s MQALLFLMALLLPSGAGAEEIIGGVESRPHSRPYMAHLEITTERGFTATC 212s GGFLITRQFVMTAAHCSGREITVTLGAHDVSKTESTQQKIKVEKQIVHPK 212s YNFYSNLHDIMLLKLQKKAKETPSVNVIPLPRPSDFIKPGKMCRAAGWGR 212s TGVTEPTSDTLREVKLRIMDKEACKNYWHYDYNLQVCVGSPRKKRSAYKG 212s DSGGPLLCAGVAHGIVSYGRGDAKPPAVFTRISSYVPWINRVIKGE 212s >sp|P23946|MCPT1_HUMAN Chymase precursor (EC 3.4.21.39) (Mast cell protease I) - Homo sapiens (Human). 212s MLLLPLPLLLFLLCSRAEAGEIIGGTECKPHSRPYMAYLEIVTSNGPSKF 212s CGGFLIRRNFVLTAAHCAGRSITVTLGAHNITEEEDTWQKLEVIKQFRHP 212s KYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWG 212s RTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFK 212s GDSGGPLLCAGVAQGIVSYGRSDAKPPAVFTRISHYRPWINQILQAN 212s >sp|P43430|MCPT8_MOUSE Mast cell protease 8 precursor (EC 3.4.21.-) (MMCP-8) - Mus musculus (Mouse). 212s MFLLLVLLVAALPVNAEGGEIIWGTESKPHSRPYMAYIRFNDSKSVYRCG 212s GFLVARDIVMTAAHCNGKVINVTLGIHNLKKKKNTQLIPVSEAIPHESFD 212s NETLVNDIMLLKLERKAQLNSAVDTIALPKSKDWVKPGQVCTVAGWGKLA 212s NCTLSDTLQEVNLEVQKGQKCRSMSQTYNDSIQLCVGNPSENKATGKGDS 212s GGPFVCNGVVQGIVSCRLCTGTLPRVFTRISSFMPWIRKTMKLLQQP 212s >sp|P52195|MCPT1_PAPHA Chymase precursor (EC 3.4.21.39) (Mast cell protease I) - Papio hamadryas (Hamadryas baboon). 212s MLLLPLPLLLLFLCSRAEAGEIIGGTECKPHSRPYMAYLEIVTSNGPSKS 212s CGGFLIRRNFVLTAAHCAGRSITVTLGAHNITEKEDTWQELEVIKQFRHP 212s KYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWG 212s RTGVLKPGSDTLQEVKLRLMDPQACSHFRYFDHNLQLCVGNPRKTKSAFK 212s GDSGGPLLCAGVAQGIVSYGRLDAKPPAVFTRISHYRPWINKILQAN 212s >sp|P56435|MCPT1_MACFA Chymase precursor (EC 3.4.21.39) (Mast cell protease I) - Macaca fascicularis (Crab eating macaque) (Cynomolgus monkey). 212s MLLLPLPLLLFFLCSRAEAGEIIGGTECKPHSRPYMAYLEIVTSNGPSKS 212s CGGFLIRRNFVLTAVHCAGRSITVTLGAHNITEKEDTWQKLEVIKQFRHP 212s KYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWG 212s RTGVLKPGSDTLQEVKLRLMDPQACSHFRYFDHNLQLCVGNPRKTKSAFK 212s GDSGGPLLCAGVAQGIVSYGRLDAKPPAVFTRISHYRPWINKILQAN 212s >sp|Q06606|GRZ2_RAT Granzyme-like protein 2 precursor (EC 3.4.21.-) (GLP-2) (Granzyme-like protein II) (GLP II) (Mast cell protease X) (rMCP-X) (rMCP-10) - Rattus norvegicus (Rat). 212s MFLFLFFLVAILPVNTEGGEIIWGTESKPHSRPYMAFIKFYDSNSEPHHC 212s GGFLVAKDIVMTAAHCNGRNIKVTLGAHNIKKQENTQVISVVKAKPHENY 212s DRDSHFNDIMLLKLERKAQLNGVVKTIALPRSQDWVKPGQVCTVAGWGRL 212s ANCTSSNTLQEVNLEVQKGQKCQDMSEDYNDSIQLCVGNPSEGKATGKGD 212s SGGPFVCDGVAQGIVSYRLCTGTLPRVFTRISSFIPWIQKTMKVLQQS 212s >sp|P13366|GRAG_MOUSE Granzyme G precursor (EC 3.4.21.-) (CTL serine protease 1) (MCSP-1) - Mus musculus (Mouse). 212s MPPILILLTLLLPLRAGAEEIIGGHEVKPHSRPYMAFIKSVDIEGKKKYC 212s GGFLVQDDFVLTAAHCRNRSMTVTLGAHNIKAKEETQQIIPVAKAIPHPA 212s FNRKHGTNDIMLLKLESKAKRTKAVRPLKLPRPNARVKPGDVCSVAGWGK 212s TSINATKASARLREAQLIIQEDEECKKLWYTYSKTTQICAGDPKKVQAPY 212s EGESGGPLVCDNLAYGVVSYGINRTITPGVFTKVVHFLPWISTNMKLL 212s >sp|P79204|MCPT2_SHEEP Mast cell protease 2 precursor (EC 3.4.21.-) (SMCP-2) - Ovis aries (Sheep). 212s MHRPPLPLVLLLLCCRAQAGEIIGGTESKPHSRPYMAYLEIVTSQEKQVA 212s CGGFLIRRDFVLTAAHCAGRSVTVTLGAHNIQKKEDTWQRLEVIKQFPYP 212s KYEPVGVHDIMLLKLKEKANLTLAVGTLPLPPHVTFIRPGRMCQVAGWGR 212s TGVKEPASSTLQEVKLRLMEPRACRHFRAFDHNLQLCVGNPQSTKSAFKG 212s DSGGPLLCAGVAQGIVSYGLSSAKPPAVFTRISPYRPWIDEVLKEN 212s >sp|P11034|MCPT1_MOUSE Mast cell protease 1 precursor (EC 3.4.21.-) (MMCP-1) - Mus musculus (Mouse). 212s MQALLFLMALLLPSGAGAEEIIGGVEARPHSRPYMAHLKIITDRGSEDRC 212s GGFLIAPQFVLTAAHCKGREITVTLGAHDVSKSESTQQRIKVEKQIIHKN 212s YNVSFNLYDIMLLKLEEKAELTPTVDVIPLPGPSDFIDPGKMCWTAGWGK 212s TGEKEPTSETLREVELRIMDKEACKMYKHYDYNFQVCVGSSTKLKTAYMG 212s DSGGPLLCAGVAHGIVSYGDSHGKPPAVFTRISAYVPWIKTVINGK 212s >sp|P21842|MCPT1_CANFA Chymase precursor (EC 3.4.21.39) (Mast cell protease I) - Canis familiaris (Dog). 212s MHCLPLTLLLLLLCSRAEAEEIIGGTESKPHSRPYMAHLEILTLRNHLAS 212s CGGFLIRRNFVLTAAHCAGRFIMVTLGAHNIQKKEDTWQKLEVIKQFPHP 212s KYDDLTLRHDIMLLKLKEKANLTLAVGTLPLSPQFNFVPPGRMCRVAGWG 212s KRQVNGSGSDTLQEVKLRLMDPQACRHYMAFDHNLQLCVGNPRKTKSAFK 212s GDSGGPLLCAGVAQGIVSYGQNDAKPPAVFTRISHYRPWINKVLKQNKA 212s >sp|P08882|GRAC_MOUSE Granzyme C precursor (EC 3.4.21.-) (Cytotoxic cell protease 2) (CCP2) (B10) - Mus musculus (Mouse). 212s MPPVLILLTLLLPLRAGAEEIIGGNEISPHSRPYMAYYEFLKVGGKKMFC 212s GGFLVRDKFVLTAAHCKGSSMTVTLGAHNIKAKEETQQIIPVAKAIPHPD 212s YNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWGK 212s VTPDGEFPKTLHEVKLTVQKDQVCESQFQSSYNRANEICVGDSKIKGASF 212s EEDSGGPLVCKRAAAGIVSYGQTDGSAPQVFTRVLSFVSWIKKTMKHS 212s >sp|P97594|MCPT8_RAT Mast cell protease 8 precursor (EC 3.4.21.-) (Mast cell protease VIII) (rMCP-VIII) (rMCP-8) - Rattus norvegicus (Rat). 212s MFLFLFFLVAILPVNTEGGEIIWGTESKPHSRPYMASLMFYYGNSYRHYC 212s GGFLVAKDIVMTAAHCNGSNIKVTLGAHNIKKQEKTQVIAVVKAKPHENY 212s DRHSRFNDIMLLKLERKAQLNGAVKTIALPRSQDWVKPGQVCTVAGWGCL 212s ANCSLSNTLQEVNLEVQEGQKCEDMSRNYNDSIQLCVGNPSEGKATGKGD 212s SGGPFVCDGVAQGIVSYRLCTGTLPRVFTRISSFIPWIQKTMKLLQQS 212s >sp|P09650|MCPT1_RAT Mast cell protease 1 precursor (EC 3.4.21.39) (Mast cell protease I) (RMCP-I) (RMCP-1) (Chymase) (Chymotrysin-like protease) (CLIP protein) - Rattus norvegicus (Rat). 212s MQALLFLMALLLPSGAGAEEIIGGVESRPHSRPYMAHLEITTERGYKATC 212s GGFLVTRQFVMTAAHCKGRETTVTLGVHDVSKTESTQQKIKVEKQIVHPN 212s YNFYSNLHDIMLLKLQKKAKVTPAVDVIPLPQPSDFLKPGKMCRAAGWGQ 212s TGVTKPTSNTLREVKQRIMDKEACKNYFHYNYNFQVCVGSPRKIRSAYKG 212s DSGGPLVCAGVAHGIVSYGRGDAKPPAVFTRISPYVPWINKVIKGKDLTS 212s LSLHESESPS 212s >sp|P50340|MCPT1_MERUN Mast cell protease 1 precursor (EC 3.4.21.-) - Meriones unguiculatus (Mongolian jird) (Mongolian gerbil). 212s MQALLFLLALLWPPEAGAEEIIGGVESKPHSRPYMAHLTITTKQGFTASC 212s GGFLINPQFVMTAAHCKGREITVTLGAHDVSKKESTQQKIKVAKQIAHPS 212s YSFYSNLHDIMLLKLQKKAKVTASVDVISLPSPSDFINPGKVCRAAGWGR 212s TGVTEPTSDKLREVKLRIMTKAACKNYEHYDYNFQVCVGSPSKIRSAYKG 212s DSGGPLVCAGVAHGIVSYGRIDAKPPAVFTRISPYVPWINLVIRGK 212s >sp|P08883|GRAF_MOUSE Granzyme F precursor (EC 3.4.21.-) (Cytotoxic cell protease 4) (CCP4) (CTL serine protease 3) (C134) (Cytotoxic serine protease 3) (MCSP3) - Mus musculus (Mouse). 212s MPPILILLTLLLPLRAGAEEIIGGHEVKPHSRPYMARVRFVKDNGKRHSC 212s GGFLVQDYFVLTAAHCTGSSMRVILGAHNIRAKEETQQIIPVAKAIPHPA 212s YDDKDNTSDIMLLKLESKAKRTKAVRPLKLPRPNARVKPGHVCSVAGWGR 212s TSINATQRSSCLREAQLIIQKDKECKKYFYKYFKTMQICAGDPKKIQSTY 212s SGDSGGPLVCNNKAYGVLTYGLNRTIGPGVFTKVVHYLPWISRNMKLL 212s >sp|P08884|GRAE_MOUSE Granzyme E precursor (EC 3.4.21.-) (Cytotoxic cell protease 3) (CCP3) (CTL serine protease 2) (D12) (Cytotoxic serine protease 2) (MCSP2) - Mus musculus (Mouse). 212s MPPVLILLTLLLPLGAGAEEIIGGHVVKPHSRPYMAFVKSVDIEGNRRYC 212s GGFLVQDDFVLTAAHCRNRTMTVTLGAHNIKAKEETQQIIPVAKAIPHPD 212s YNATAFFSDIMLLKLESKAKRTKAVRPLKLPRPNARVKPGDVCSVAGWGS 212s RSINDTKASARLREAQLVIQEDEECKKRFRHYTETTEICAGDLKKIKTPF 212s KGDSGGPLVCDNKAYGLLAYAKNRTISSGVFTKIVHFLPWISRNMKLL 212s >sp|P00770|MCPT2_RAT Mast cell protease 2 precursor (EC 3.4.21.-) (Mast cell protease II) (rMCP-II) (rMCP-2) (Group-specific protease) - Rattus norvegicus (Rat). 212s MQALLFLMALLLPSGAGAEEIIGGVESIPHSRPYMAHLDIVTEKGLRVIC 212s GGFLISRQFVLTAAHCKGREITVILGAHDVRKRESTQQKIKVEKQIIHES 212s YNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWGK 212s TGVRDPTSYTLREVELRIMDEKACVDYRYYEYKFQVCVGSPTTLRAAFMG 212s DSGGPLLCAGVAHGIVSYGHPDAKPPAIFTRVSTYVPWINAVINTSS 212s >sp|P11033|GRAD_MOUSE Granzyme D precursor (EC 3.4.21.-) - Mus musculus (Mouse). 212s MPPILILLTLLLPLRAGAEEIIGGHVVKPHSRPYMAFVMSVDIKGNRIYC 212s GGFLIQDDFVLTAAHCKNSSMTVTLGAHNITAKEETQQIIPVAKDIPHPD 212s YNATIFYSDIMLLKLESKAKRTKAVRPLKLPRSNARVKPGDVCSVAGWGS 212s RSINDTKASARLREVQLVIQEDEECKKRFRYYTETTEICAGDLKKIKTPF 212s KGDSGGPLVCHNQAYGLFAYAKNGTISSGIFTKVVHFLPWISWNMKLL 212s >sp|P97592|MCPT4_RAT Mast cell protease 4 precursor (EC 3.4.21.-) (Mast cell protease IV) (rMCP-IV) (rMCP-4) - Rattus norvegicus (Rat). 212s MKALLFLMALLLPSGAGAEEIIGGVESIPHSRPYMALLKIVTEEGHVTFC 212s GGFLISLQFVLTAAHCHGREITVTLGAHDMSKRESTQQKIKVVKQIFPLK 212s YNLFSNFRDIMLLKLEQKAVLTPSVNVIPLPQSSDIIKPGTMCLAAGWGQ 212s TGVKEPNSNTLREVMLRIMEMKACKDYRHYDNRFQICVGIPQMLKLAYKG 212s DSGGPLVCAGVAHGIVSHGPGRGIPPIIFTRISSYVSWINRVIRGN 212s >sp|O35164|MCPT9_MOUSE Mast cell protease 9 precursor (EC 3.4.21.-) (MMCP-9) - Mus musculus (Mouse). 212s MQALLFLMALLLPSRAGAEEIIGGVESEPHSRPYMAYVNTFSKKGYVAIC 212s GGFLIAPQFVMTAAHCSGRRMTVTLGAHNVRKRECTQQKIKVEKYILPPN 212s YNVSSKFNDIVLLKLKKQANLTSAVDVVPLPGPSDFAKPGTMCWAAGWGR 212s TGVKKSISHTLREVELKIVGEKACKIFRHYKDSLQICVGSSTKVASVYMG 212s DSGGPLLCAGVAHGIVSSGRGNAKPPAIFTRISPHVPWINRVIKGE 212s >sp|Q00356|MCPTX_MOUSE Mast cell protease-like protein precursor (EC 3.4.21.-) - Mus musculus (Mouse). 212s MQALLFLMALLLPSGAGAEEIIGGVESEPHSRPYMAYVNTFRRKGYVAIC 212s GGFLITPQFVMTAAHCRGRRMTVTLGAHNVRKRECTQQKIKVEKYILPPN 212s YNVSSKFNDIVLLKLKKQANLTSAVDVVPLPGPSDFAKPGTMCWAAGWGR 212s TGVKKIISHTLREVELKIVGEKACKIFRHYKDSLQICVGSSTKVASVYMG 212s DSGGPLLCAGVAHGIVSSGRGNAKPPAIFTRISPHVPWINRVIKGK 212s >sp|P50339|MCPT3_RAT Mast cell protease 3 precursor (EC 3.4.21.-) (Mast cell protease III) (rMCP-III) (rMCP-3) (Chymase 1) - Rattus norvegicus (Rat). 212s MNLHALCLLLLLLGSSTKAGEIIGGTECIPHSRPYMAYLEIVTSDNYLSA 212s CSGFLIRRNFVLTAAHCAGRSITVLLGAHNKTYKEDTWQKLEVEKQFIHP 212s NYDKRLVLHDIMLLKLKEKAKLTLGVGTLPLSANFNFIPPGRMCRAVGWG 212s RTNVNEPASDTLQEVKMRLQEPQSCKHFTSFQHKSQLCVGNPKKMQNVYK 212s GDSGGPLLCAGIAQGIASYVHPNAKPPAVFTRISHYRPWINKILREN 212s >sp|P21844|MCPT5_MOUSE Mast cell protease 5 precursor (EC 3.4.21.-) (MMCP-5) (Mast cell chymase 1) - Mus musculus (Mouse). 212s MHLLTLHLLLLLLGSSTKAGEIIGGTECIPHSRPYMAYLEIVTSENYLSA 212s CSGFLIRRNFVLTAAHCAGRSITVLLGAHNKTSKEDTWQKLEVEKQFLHP 212s KYDENLVVHDIMLLKLKEKAKLTLGVGTLPLSANFNFIPPGRMCRAVGWG 212s RTNVNEPASDTLQEVKMRLQEPQACKHFTSFRHNSQLCVGNPKKMQNVYK 212s GDSGGPLLCAGIAQGIASYVHRNAKPPAVFTRISHYRPWINKILREN 212s >sp|P50341|MCPT2_MERUN Mast cell protease 2 precursor (EC 3.4.21.-) - Meriones unguiculatus (Mongolian jird) (Mongolian gerbil). 212s MHLLALHLLLFLLGSRAKAGEIIGGTECKPHSRPYMAYLEIATSKNYLST 212s CSGFLIRRNFVLTAAHCSGRSITVLLGAHNKTAKEDTWQKIEVEKQFPHP 212s KYDDYSVLHDIMLLKLKEKAKLTLAVGTLPLPAKFSFIPPGRVCRAVGWG 212s KTNVNEPTSDTLQEVKMRLLEAEGCKHFTNFYHSSQLCVGNPKKMQNVYK 212s GDSGGPLLCAGIAQGIASYVRRNARPPAVFTRISHYRPWINKILREN 212s >sp|P15119|MCPT2_MOUSE Mast cell protease 2 precursor (EC 3.4.21.-) (MMCP-2) - Mus musculus (Mouse). 212s MQALLFLMALLLPSGAGAEEIIGGVEAKPHSRPYMAYLKFTTKNGSKERC 212s GGFLIAPQFVMTAAHCNGSEISVILGAHNINKNEPTQQIIKTEKTFVHPK 212s FQYLSGFYDIMLLKLQKKAELNSDVDVISLPSSSDFIKPGKMCWTAGWGK 212s TGKNNPLSVTLREVELRIMDQEACKDHSDYDYQLQVCAGSPTTSKSIGQG 212s DSGGPLVCDSVAHGIASSYEAKAPAVFTRISYYLPWIYKVLKSK 212s >sp|P35033|TRY3_SALSA Trypsin-3 precursor (EC 3.4.21.4) (Trypsin III) (Fragment) - Salmo salar (Atlantic salmon). 212s FAVAFAAPIDDEDDKIVGGYECRKNSASYQASLQSGYHFCGGSLISSTWV 212s VSAAHCYKSRIQVRLGEHNIAVNEGTEQFIDSVKVIMHPSYNSRNLDNDI 212s MLIKLSKPASLNSYVSTVALPSSCASSGTRCLVSGWGNLSGSSSNYPDTL 212s RCLDLPILSSSSCNSAYPGQITSNMFCAGFMEGGKDSCQGDSGGPVVCNG 212s QLQGVVSWGYGCAQRNKPGVYTKVCNYRSWISSTMSSN 212s >sp|P70059|TRY2_XENLA Trypsin precursor (EC 3.4.21.4) - Xenopus laevis (African clawed frog). 212s MKFLVILVLLGAAVAFEDDDKIVGGFTCAKNAVPYQVSLNAGYHFCGGSL 212s INSQWVVSAAHCYKSRIQVRLGEHNIALNEGTEQFIDSQKVIKHPNYNSR 212s NLDNDIMLIKLSTTARLSANIQSVPLPSACASAGTNCLISGWGNTLSSGT 212s NYPDLLQCLNAPILTDSQCSNSYPGEITKNMFCAGFLAGGKDSCQGDSGG 212s PVVCNGQLQGVVSWGYGCAQRNYPGVYTKVCNFVTWIQSTISSN 212s >sp|P35032|TRY2_SALSA Trypsin-2 precursor (EC 3.4.21.4) (Trypsin II) (Fragment) - Salmo salar (Atlantic salmon). 212s AAFATEDDKIVGGYECKAYSQPHQVSLNSGYHFCGGSLVNENWVVSAAHC 212s YQSRVEVRLGEHNIQVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLS 212s KPATLNTYVQPVALPTSCAPAGTMCTVSGWGNTMSSTADKNKLQCLNIPI 212s LSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGELQGVVS 212s WGYGCAEPGNPGVYAKVCIFNDWLTSTMATY 212s >sp|P00762|TRY1_RAT Anionic trypsin-1 precursor (EC 3.4.21.4) (Anionic trypsin I) (Pretrypsinogen I) - Rattus norvegicus (Rat). 212s MSALLILALVGAAVAFPLEDDDKIVGGYTCPEHSVPYQVSLNSGYHFCGG 212s SLINDQWVVSAAHCYKSRIQVRLGEHNINVLEGDEQFINAAKIIKHPNYS 212s SWTLNNDIMLIKLSSPVKLNARVAPVALPSACAPAGTQCLISGWGNTLSN 212s GVNNPDLLQCVDAPVLSQADCEAAYPGEITSSMICVGFLEGGKDSCQGDS 212s GGPVVCNGQLQGIVSWGYGCALPDNPGVYTKVCNFVGWIQDTIAAN 212s >sp|P35031|TRY1_SALSA Trypsin-1 precursor (EC 3.4.21.4) (Trypsin I) - Salmo salar (Atlantic salmon). 212s MISLVFVLLIGAAFATEDDKIVGGYECKAYSQTHQVSLNSGYHFCGGSLV 212s NENWVVSAAHCYKSRVEVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYN 212s IDNDIMLIKLSKPATLNTYVQPVALPTSCAPAGTMCTVSGWGNTMSSTAD 212s SNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPV 212s VCNGELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMASY 212s >sp|P06872|TRY2_CANFA Anionic trypsin precursor (EC 3.4.21.4) - Canis familiaris (Dog). 212s MNPLLILAFLGAAVATPTDDDDKIVGGYTCEENSVPYQVSLNAGYHFCGG 212s SLISDQWVVSAAHCYKSRIQVRLGEYNIDVLEGNEQFINSAKVIRHPNYN 212s SWILDNDIMLIKLSSPAVLNARVATISLPRACAAPGTQCLISGWGNTLSS 212s GTNYPELLQCLDAPILTQAQCEASYPGQITENMICAGFLEGGKDSCQGDS 212s GGPVVCNGELQGIVSWGYGCAQKNKPGVYTKVCNFVDWIQSTIAANS 212s >sp|P24158|PRTN3_HUMAN Myeloblastin precursor (EC 3.4.21.76) (Leukocyte proteinase 3) (PR-3) (PR3) (AGP7) (Wegener's autoantigen) (P29) (C-ANCA antigen) (Neutrophil proteinase 4) (NP-4) - Homo sapiens (Human). 212s MAHRPPSPALASVLLALLLSGAARAAEIVGGHEAQPHSRPYMASLQMRGN 212s PGSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGAHNVRTQEPTQQHF 212s SVAQVFLNNYDAENKLNDVLLIQLSSPANLSASVATVQLPQQDQPVPHGT 212s QCLAMGWGRVGAHDPPAQVLQELNVTVVTFFCRPHNICTFVPRRKAGICF 212s GDSGGPLICDGIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLRRV 212s EAKGRP 212s >sp|P07477|TRY1_HUMAN Trypsin-1 precursor (EC 3.4.21.4) (Trypsin I) (Cationic trypsinogen) - Homo sapiens (Human). 212s MNPLLILTFVAAALAAPFDDDDKIVGGYNCEENSVPYQVSLNSGYHFCGG 212s SLINEQWVVSAGHCYKSRIQVRLGEHNIEVLEGNEQFINAAKIIRHPQYD 212s RKTLNNDIMLIKLSSRAVINARVSTISLPTAPPATGTKCLISGWGNTASS 212s GADYPDELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDS 212s GGPVVCNGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAANS 212s >sp|P16049|TRY1_GADMO Trypsin-1 precursor (EC 3.4.21.4) (Trypsin I) - Gadus morhua (Atlantic cod). 212s MKSLIFVLLLGAVFAEEDKIVGGYECTKHSQAHQVSLNSGYHFCGGSLVS 212s KDWVVSAAHCYKSVLRVRLGEHHIRVNEGTEQYISSSSVIRHPNYSSYNI 212s NNDIMLIKLTKPATLNQYVHAVALPTECAADATMCTVSGWGNTMSSVADG 212s DKLQCLSLPILSHADCANSYPGMITQSMFCAGYLEGGKDSCQGDSGGPVV 212s CNGVLQGVVSWGYGCAERDHPGVYAKVCVLSGWVRDTMANY 212s >sp|Q9UKR3|KLK13_HUMAN Kallikrein-13 precursor (EC 3.4.21.-) (Kallikrein-like protein 4) (KLK-L4) - Homo sapiens (Human). 212s MWPLALVIASLTLALSGGVSQESSKVLNTNGTSGFLPGGYTCFPHSQPWQ 212s AALLVQGRLLCGGVLVHPKWVLTAAHCLKEGLKVYLGKHALGRVEAGEQV 212s REVVHSIPHPEYRRSPTHLNHDHDIMLLELQSPVQLTGYIQTLPLSHNNR 212s LTPGTTCRVSGWGTTTSPQVNYPKTLQCANIQLRSDEECRQVYPGKITDN 212s MLCAGTKEGGKDSCEGDSGGPLVCNRTLYGIVSWGDFPCGQPDRPGVYTR 212s VSRYVLWIRETIRKYETQQQKWLKGPQ 212s >sp|Q91041|TRYX_GADMO Trypsin-10 precursor (EC 3.4.21.4) (Trypsin X) - Gadus morhua (Atlantic cod). 212s MKSLIFVLLLGAVFAEEDKIVGGYECTRHSQAHQVSLNSGYHFCGGSLVS 212s KDWVVSAAHCYKSVLRVRLGEHHIRVNEGTEQFISSSSVIRHPNYSSYNI 212s DNDIMLIKLTEPATLNQYVHAVALPTECAADATMCTVSGWGNTMSSVDDG 212s DKLQCLNLPILSHADCANSYPGMITQSMFCAGYLEGGKDSCQGDSGGPVV 212s CNGVLQGVVSWGYGCAERDNPGVYAKVCVLSGWVRDTMASY 212s >sp|Q90627|TRY1_CHICK Trypsin I-P1 precursor (EC 3.4.21.4) - Gallus gallus (Chicken). 212s MKFLVLVAFVGVTVAFPISDEDDDKIVGGYSCARSAAPYQVSLNSGYHFC 212s GGSLISSQWVLSAAHCYKSSIQVKLGEYNLAAQDGSEQTISSSKVIRHSG 212s YNANTLNNDIMLIKLSKAATLNSYVNTVPLPTSCVTAGTTCLISGWGNTL 212s SSGSLYPDVLQCLNAPVLSSSQCSSAYPGRITSNMICIGYLNGGKDSCQG 212s DSGGPVVCNGQLQGIVSWGIGCAQKGYPGVYTKVCNYVSWIKTTMSSN 212s >sp|P51779|CFAD_PIG Complement factor D precursor (EC 3.4.21.46) (C3 convertase activator) (Properdin factor D) (Adipsin) - Sus scrofa (Pig). 212s MADRSGHLAALILLGAAVCVAQPRGRILGGQEAKSHERPYMASVQVNGKH 212s VCGGFLVSEQWVLSAAHCLEDVAEGKLQVLLGAHSLSQPEPSKRLYDVLR 212s AVPHPDSQPDTIDHDLLLLKLSEKAELGPAVQPLAWQREDHEVPAGTLCD 212s VAGWGVVSHTGRRPDRLQHLLLPVLDRTTCNLRTYHDGTITERMMCAESN 212s RRDSCKGDSGGPLVCGGVAEGVVTSGSRVCGNRKKPGIYTRLASYVAWID 212s GVMADSAAA 212s >sp|P00746|CFAD_HUMAN Complement factor D precursor (EC 3.4.21.46) (C3 convertase activator) (Properdin factor D) (Adipsin) - Homo sapiens (Human). 212s MHSSVYFAVLVLLGAAACAARPRGRILGGREAEAHARPYMASVQLNGAHL 212s CGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRA 212s VPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDV 212s AGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAESNR 212s RDSCKGDSGGPLVCGGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDS 212s VLA 212s >sp|Q9H2R5|KLK15_HUMAN Kallikrein-15 precursor (EC 3.4.21.-) (ACO protease) - Homo sapiens (Human). 212s MWLLLTLSFLLASTAAQDGDKLLEGDECAPHSQPWQVALYERGRFNCGAS 212s LISPHWVLSAAHCQSRFMRVRLGEHNLRKRDGPEQLRTTSRVIPHPRYEA 212s RSHRNDIMLLRLVQPARLNPQVRPAVLPTRCPHPGEACVVSGWGLVSHNE 212s PGTAGSPRSQVSLPDTLHCANISIISDTSCDKSYPGRLTNTMVCAGAEGR 212s GAESCEGDSGGPLVCGGILQGIVSWGDVPCDNTTKPGVYTKVCHYLEWIR 212s ETMKRN 212s >sp|P00761|TRYP_PIG Trypsin precursor (EC 3.4.21.4) - Sus scrofa (Pig). 212s FPTDDDDKIVGGYTCAANSIPYQVSLNSGSHFCGGSLINSQWVVSAAHCY 212s KSRIQVRLGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSS 212s PATLNSRVATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPV 212s LSDSSCKSSYPGQITGNMICVGFLEGGKDSCQGDSGGPVVCNGQLQGIVS 212s WGYGCAQKNKPGVYTKVCNYVNWIQQTIAAN 212s >sp|P08426|TRY3_RAT Cationic trypsin-3 precursor (EC 3.4.21.4) (Cationic trypsin III) (Pretrypsinogen III) - Rattus norvegicus (Rat). 212s MKALIFLAFLGAAVALPLDDDDDKIVGGYTCQKNSLPYQVSLNAGYHFCG 212s GSLINSQWVVSAAHCYKSRIQVRLGEHNIDVVEGGEQFIDAAKIIRHPSY 212s NANTFDNDIMLIKLNSPATLNSRVSTVSLPRSCGSSGTKCLVSGWGNTLS 212s SGTNYPSLLQCLDAPVLSDSSCKSSYPGKITSNMFCLGFLEGGKDSCQGD 212s SGGPVVCNGQLQGVVSWGYGCAQKGKPGVYTKVCNYVNWIQQTVAAN 212s >sp|P12544|GRAA_HUMAN Granzyme A precursor (EC 3.4.21.78) (Cytotoxic T-lymphocyte proteinase 1) (Hanukkah factor) (H factor) (HF) (Granzyme-1) (CTL tryptase) (Fragmentin-1) - Homo sapiens (Human). 212s MRNSYRFLASSLSVVVSLLLIPEDVCEKIIGGNEVTPHSRPYMVLLSLDR 212s KTICAGALIAKDWVLTAAHCNLNKRSQVILGAHSITREEPTKQIMLVKKE 212s FPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQV 212s AGWGRTHNSASWSDTLREVNITIIDRKVCNDRNHYNFNPVIGMNMVCAGS 212s LRGGRDSCNGDSGSPLLCEGVFRGVTSFGLENKCGDPRGPGVYILLSKKH 212s LNWIIMTIKGAV 212s >sp|Q90628|TRY2_CHICK Trypsin I-P38 precursor (EC 3.4.21.4) - Gallus gallus (Chicken). 212s MKFLVLVAFLGVAVAFPISDEDDDKIVGGYSCARSAAPYQVSLNSGYHFC 212s GGSLISSQWVLSAAHCYKSSIQVKLGEYNLAAQDGSEQTISSSKVIRHSG 212s YNANTLNNDIMLIKLSKAATLNSYVNTVPLPTSCVTAGTTCLISGWGNTL 212s SSGSLYPDVLQCLNAPVLSSSQCSSAYPGRITSNMICIGYLNGGKDSCQG 212s DSGGPVVCNGQLQGFVSWGIGCAQKGYPGVYTKVCNYVSWIKTTMSSN 212s >sp|Q9P0G3|KLK14_HUMAN Kallikrein-14 precursor (EC 3.4.21.-) (Kallikrein-like protein 6) (KLK-L6) - Homo sapiens (Human). 212s MFLLLTALQVLAIAMTQSQEDENKIIGGHTCTRSSQPWQAALLAGPRRRF 212s LCGGALLSGQWVITAAHCGRPILQVALGKHNLRRWEATQQVLRVVRQVTH 212s PNYNSRTHDNDLMLLQLQQPARIGRAVRPIEVTQACASPGTSCRVSGWGT 212s ISSPIARYPASLQCVNINISPDEVCQKAYPRTITPGMVCAGVPQGGKDSC 212s QGDSGGPLVCRGQLQGLVSWGMERCALPGYPGVYTNLCKYRSWIEETMRD 212s K 212s >sp|P00763|TRY2_RAT Anionic trypsin-2 precursor (EC 3.4.21.4) (Anionic trypsin II) (Pretrypsinogen II) - Rattus norvegicus (Rat). 212s MRALLFLALVGAAVAFPVDDDDKIVGGYTCQENSVPYQVSLNSGYHFCGG 212s SLINDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIKHPNFD 212s RKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSS 212s GVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDS 212s GGPVVCNGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 212s >sp|P07146|TRY2_MOUSE Anionic trypsin-2 precursor (EC 3.4.21.4) (Anionic trypsin II) (Pretrypsinogen II) - Mus musculus (Mouse). 212s MSALLILALVGAAVAFPVDDDDKIVGGYTCRESSVPYQVSLNAGYHFCGG 212s SLINDQWVVSAAHCYKYRIQVRLGEHNINVLEGNEQFVDSAKIIRHPNYN 212s SWTLDNDIMLIKLASPVTLNARVASVPLPSSCAPAGTQCLISGWGNTLSN 212s GVNNPDLLQCVDAPVLPQADCEASYPGDITNNMICVGFLEGGKDSCQGDS 212s GGPVVCNGELQGIVSWGYGCAQPDAPGVYTKVCNYVDWIQNTIADN 212s >sp|P35030|TRY3_HUMAN Trypsin-3 precursor (EC 3.4.21.4) (Trypsin III) (Brain trypsinogen) (Mesotrypsinogen) (Trypsin IV) - Homo sapiens (Human). 212s MCGPDDRCPARWPGPGRAVKCGKGLAAARPGRVERGGAQRGGAGLELHPL 212s LGGRTWRAARDADGCEALGTVAVPFDDDDKIVGGYTCEENSLPYQVSLNS 212s GSHFCGGSLISEQWVVSAAHCYKTRIQVRLGEHNIKVLEGNEQFINAAKI 212s IRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLPTAPPAAGTECLISG 212s WGNTLSFGADYPDELKCLDAPVLTQAECKASYPGKITNSMFCVGFLEGGK 212s DSCQRDSGGPVVCNGQLQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTI 212s AANS 212s >sp|Q7JIG6|KLK15_SAGOE Kallikrein-15 precursor (EC 3.4.21.-) - Saguinus oedipus (Cotton-top tamarin). 212s MWLLLPLSFLLTSTAQDGGKLLEGEECAPHSQPWQVALYERGRFNCGASL 212s ISPHWVLSAAHCQSRFMRVRLGEHNLRKRDGPEQLRTASRVIPHPRYEAR 212s SHRHDIMLLRLVQPARLTPQVRPVVLPTRCPHPGEACVVSGWGLVSHNEP 212s GTTGRPQSQVSLPDTLHCANISIISDASCDKNYPGRLTNTMVCAGAEGRG 212s AESCEGDSGGPLVCGGILQGIVSWGDVPCDNTTKPGVYTKVCRYVKWIRE 212s TMKRN 212s >sp_vs|P35030-2|P35030 Isoform B of P35030 212s MELHPLLGGRTWRAARDADGCEALGTVAVPFDDDDKIVGGYTCEENSLPY 212s QVSLNSGSHFCGGSLISEQWVVSAAHCYKTRIQVRLGEHNIKVLEGNEQF 212s INAAKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLPTAPPAAGT 212s ECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKASYPGKITNSMFCVG 212s FLEGGKDSCQRDSGGPVVCNGQLQGVVSWGHGCAWKNRPGVYTKVYNYVD 212s WIKDTIAANS 212s >sp_vs|P35030-3|P35030 Isoform C of P35030 212s MNPFLILAFVGAAVAVPFDDDDKIVGGYTCEENSLPYQVSLNSGSHFCGG 212s SLISEQWVVSAAHCYKTRIQVRLGEHNIKVLEGNEQFINAAKIIRHPKYN 212s RDTLDNDIMLIKLSSPAVINARVSTISLPTAPPAAGTECLISGWGNTLSF 212s GADYPDELKCLDAPVLTQAECKASYPGKITNSMFCVGFLEGGKDSCQRDS 212s GGPVVCNGQLQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTIAANS 212s >sp|P11032|GRAA_MOUSE Granzyme A precursor (EC 3.4.21.78) (T cell-specific serine protease 1) (TSP-1) (CTLA-3) (Fragmentin-1) (Autocrine thymic lymphoma granzyme-like serine protease) - Mus musculus (Mouse). 212s MRNASGPRGPSLATLLFLLLIPEGGCERIIGGDTVVPHSRPYMALLKLSS 212s NTICAGALIEKNWVLTAAHCNVGKRSKFILGAHSINKEPEQQILTVKKAF 212s PYPCYDEYTREGDLQLVRLKKKATVNRNVAILHLPKKGDDVKPGTRCRVA 212s GWGRFGNKSAPSETLREVNITVIDRKICNDEKHYNFHPVIGLNMICAGDL 212s RGGKDSCNGDSGSPLLCDGILRGITSFGGEKCGDRRWPGVYTFLSDKHLN 212s WIKKIMKGSV 212s >sp_vs|P11032-2|P11032 Isoform HF2 of P11032 212s MSKEMNEILLSWEINLSSKRGGCERIIGGDTVVPHSRPYMALLKLSSNTI 212s CAGALIEKNWVLTAAHCNVGKRSKFILGAHSINKEPEQQILTVKKAFPYP 212s CYDEYTREGDLQLVRLKKKATVNRNVAILHLPKKGDDVKPGTRCRVAGWG 212s RFGNKSAPSETLREVNITVIDRKICNDEKHYNFHPVIGLNMICAGDLRGG 212s KDSCNGDSGSPLLCDGILRGITSFGGEKCGDRRWPGVYTFLSDKHLNWIK 212s KIMKGSV 212s >sp|P06871|TRY1_CANFA Cationic trypsin precursor (EC 3.4.21.4) - Canis familiaris (Dog). 212s MKTFIFLALLGATVAFPIDDDDKIVGGYTCSRNSVPYQVSLNSGYHFCGG 212s SLINSQWVVSAAHCYKSRIQVRLGEYNIAVSEGGEQFINAAKIIRHPRYN 212s ANTIDNDIMLIKLSSPATLNSRVSAIALPKSCPAAGTQCLISGWGNTQSI 212s GQNYPDVLQCLKAPILSDSVCRNAYPGQISSNMMCLGYMEGGKDSCQGDS 212s GGPVVCNGELQGVVSWGAGCAQKGKPGVSPKVCKYVSWIQQTIAAN 212s >sp|P07478|TRY2_HUMAN Trypsin-2 precursor (EC 3.4.21.4) (Trypsin II) (Anionic trypsinogen) - Homo sapiens (Human). 212s MNLLLILTFVAAAVAAPFDDDDKIVGGYICEENSVPYQVSLNSGYHFCGG 212s SLISEQWVVSAGHCYKSRIQVRLGEHNIEVLEGNEQFINAAKIIRHPKYN 212s SRTLDNDILLIKLSSPAVINSRVSAISLPTAPPAAGTESLISGWGNTLSS 212s GADYPDELQCLDAPVLSQAECEASYPGKITNNMFCVGFLEGGKDSCQGDS 212s GGPVVSNGELQGIVSWGYGCAQKNRPGVYTKVYNYVDWIKDTIAANS 212s >sp|P19799|TRY1_XENLA Trypsin precursor (EC 3.4.21.4) - Xenopus laevis (African clawed frog). 212s MKFLLLCVLLGAAAAFDDDKIIGGATCAKSSVPYIVSLNSGYHFCGGSLI 212s TNQWVVSAAHCYKASIQVRLGEHNIALSEGTEQFISSSKVIRHSGYNSYT 212s LDNDIMLIKLSSPASLNAAVNTVPLPSGCSAAGTSCLISGWGNTLSNGSN 212s YPDLLQCLNAPILTNAQCNSAYPGEITANMICVGYMEGGKDSCQGDSGGP 212s VVCNGQLQGVVSWGYGCAMRNYPGVYTKVCNYNAWIQNTIAAN 212s >sp|P49864|GRAK_RAT Granzyme K precursor (EC 3.4.21.-) (NK-tryptase-2) (NK-Tryp-2) - Rattus norvegicus (Rat). 212s MSFSSSALVFLVAGIYMSSESFHTEIIGGREVQPHSRPFMASIQYRGKHI 212s CGGVLIHPQWVLTAAHCYSRGHSPTVVLGAHSLSKNEPMKQTFEIKEFIP 212s FSGFKSGTNDIMLIKLRTAAELNKHVQLLHLRSKNYIRDGTKCQVTGWGS 212s TKPDVLTTSDTLQEVTVTIISRKRCNSQSYYNHKPVITKDMICAGDRRGE 212s KDSCKGDSGGPLICKGVFHALVSGGYKCGISNKPGVYTLLTKKYQTWIKS 212s KLAPSSAH 212s >sp|Q90629|TRY3_CHICK Trypsin II-P29 precursor (EC 3.4.21.4) - Gallus gallus (Chicken). 212s MKFLFLILSCLGAAVAFPGGADDDKIVGGYTCPEHSVPYQVSLNSGYHFC 212s GGSLINSQWVLSAAHCYKSRIQVRLGEYNIDVQEDSEVVRSSSVIIRHPK 212s YSSITLNNDIMLIKLASAVEYSADIQPIALPSSCAKAGTECLISGWGNTL 212s SNGYNYPELLQCLNAPILSDQECQEAYPGDITSNMICVGFLEGGKDSCQG 212s DSGGPVVCNGELQGIVSWGIGCALKGYPGVYTKVCNYVDWIQETIAAY 212s >sp|P49863|GRAK_HUMAN Granzyme K precursor (EC 3.4.21.-) (Granzyme-3) (NK-tryptase-2) (NK- TRYP-2) (Fragmentin-3) - Homo sapiens (Human). 212s MTKFSSFSLFFLIVGAYMTHVCFNMEIIGGKEVSPHSRPFMASIQYGGHH 212s VCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAHSLSKNEASKQTLEIK 212s KFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCK 212s VTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCA 212s GDAKGQKDSCKGDSGGPLICKGVFHAIVSGGHECGVATKPGIYTLLTKKY 212s QTWIKSNLVPPHTN 212s >sp|O35205|GRAK_MOUSE Granzyme K precursor (EC 3.4.21.-) - Mus musculus (Mouse). 212s MRFSSWALVSLVAGVYMSSECFHTEIIGGREVQPHSRPFMASIQYRSKHI 212s CGGVLIHPQWVLTAAHCYSWFPRGHSPTVVLGAHSLSKNEPMKQTFEIKK 212s FIPFSRLQSGSASHDIMLIKLRTAAELNKNVQLLHLGSKNYLRDGTKCQV 212s TGWGTTKPDLLTASDTLREVTVTIISRKRCNSQSYYNHKPVITKDMICAG 212s DARGQKDSCKGDSGGPLICKGIFHALVSQGYKCGIAKKPGIYTLLTKKYQ 212s TWIKSKLAPSRAH 212s >sp|P32822|TRYB_RAT Trypsin V-B precursor (EC 3.4.21.4) - Rattus norvegicus (Rat). 212s MKICIFFTLLGTVAAFPTEDNDDRIVGGYTCQEHSVPYQVSLNAGSHICG 212s GSLITDQWVLSAAHCYHPQLQVRLGEHNIYEIEGAEQFIDAAKMILHPDY 212s DKWTVDNDIMLIKLKSPATLNSKVSTIPLPQYCPTAGTECLVSGWGVLKF 212s GFESPSVLQCLDAPVLSDSVCHKAYPRQITNNMFCLGFLEGGKDSCQYDS 212s GGPVVCNGEVQGIVSWGDGCALEGKPGVYTKVCNYLNWIQQTVAAN 212s >sp|P00760|TRY1_BOVIN Cationic trypsin precursor (EC 3.4.21.4) (Beta-trypsin) [Contains: Alpha-trypsin chain 1; Alpha-trypsin chain 2] (Fragment) - Bos taurus (Bovine). 212s FIFLALLGAAVAFPVDDDDKIVGGYTCGANTVPYQVSLNSGYHFCGGSLI 212s NSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNT 212s LNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTS 212s YPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGP 212s VVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN 212s >sp|Q92876|KLK6_HUMAN Kallikrein-6 precursor (EC 3.4.21.-) (Protease M) (Neurosin) (Zyme) (SP59) - Homo sapiens (Human). 212s MKKLMVVLSLIAAAWAEEQNKLVHGGPCDKTSHPYQAALYTSGHLLCGGV 212s LIHPLWVLTAAHCKKPNLQVFLGKHNLRQRESSQEQSSVVRAVIHPDYDA 212s ASHDQDIMLLRLARPAKLSELIQPLPLERDCSANTTSCHILGWGKTADGD 212s FPDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGP 212s LVCGDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQAK 212s >sp|Q9Y5K2|KLK4_HUMAN Kallikrein-4 precursor (EC 3.4.21.-) (Prostase) (Kallikrein-like protein 1) (KLK-L1) (Enamel matrix serine proteinase 1) - Homo sapiens (Human). 212s MATAGNPWGWFLGYLILGVAGSLVSGSCSQIINGEDCSPHSQPWQAALVM 212s ENELFCSGVLVHPQWVLSAAHCFQNSYTIGLGLHSLEADQEPGSQMVEAS 212s LSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIASQCPTAGNSCLV 212s SGWGLLANGRMPTVLQCVNVSVVSEEVCSKLYDPLYHPSMFCAGGGQDQK 212s DSCNGDSGGPLICNGYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKT 212s VQAS 212s >sp|P32821|TRYA_RAT Trypsin V-A precursor (EC 3.4.21.4) - Rattus norvegicus (Rat). 212s MKICIFFTLLGTVAAFPTEDNDDRIVGGYTCQEHSVPYQVSLNAGSHICG 212s GSLITDQWVLSAAHCYHPQLQVRLGEHNIYEIEGAEQFIDAAKMILHPDY 212s DKWTVDNDIMLIKLKSPATLNSKVSTIPLPQYCPTAGTECLVSGWGVLKF 212s GFESPSVLQCLDAPVLSDSVCHKAYPRQITNNMFCLGFLEGGKDSCQYDS 212s GGPVVCNGEVQGIVSWGDGCALEGKPGVYTKVCNYLNWIHQTIAEN 212s >sp|P12788|TRY4_RAT Trypsin-4 precursor (EC 3.4.21.4) (Trypsin IV) (Pretrypsinogen IV) - Rattus norvegicus (Rat). 212s MKISIFFAFLGAAVALPVNDDDKIVGGYTCPKHLVPYQVSLHDGISHQCG 212s GSLISDQWVLSAAHCYKRKLQVRLGEHNIHVLEGGEQFIDAEKIIRHPEY 212s NKDTLDNDIMLIKLKSPAVLNSQVSTVSLPRSCASTDAQCLVSGWGNTVS 212s IGGKYPALLQCLEAPVLSASSCKKSYPGQITSNMFCLGFLEGGKDSCDGD 212s SGGPVVCNGEIQGIVSWGSVCAMRGKPGVYTKVCNYLSWIQETMANN 212s >sp|Q61096|PRTN3_MOUSE Myeloblastin precursor (EC 3.4.21.76) (Proteinase 3) (PR-3) - Mus musculus (Mouse). 212s MSGSYPSPKGIHPFLLLALVVGGAVQASKIVGGHEARPHSRPYVASLQLS 212s RFPGSHFCGGTLIHPRFVLTAAHCLQDISWQLVTVVLGAHDLLSSEPEQQ 212s KFTISQVFQNNYNPEENLNDVLLLQLNRTASLGKEVAVASLPQQDQTLSQ 212s GTQCLAMGWGRLGTQAPTPRVLQELNVTVVTFLCREHNVCTLVPRRAAGI 212s CFGDSGGPLICNGILHGVDSFVIRECASLQFPDFFARVSMYVDWIQNVLR 212s GAEP 212s >sp|P00764|TRYP_SQUAC Trypsin precursor (EC 3.4.21.4) - Squalus acanthias (Spiny dogfish). 212s APDDDDKIVGGYECPKHAAPWTVSLNVGYHFCGGSLIAPGWVVSAAHCYQ 212s RRIQVRLGEHDISANEGDETYIDSSMVIRHPNYSGYDLDNDIMLIKLSKP 212s AALNRNVDLISLPTGCAYAGEMCLISGWGNTMDGAVSGDQLQCLDAPVLS 212s DAECKGAYPGMITNNMMCVGYMEGGKDSCQGDSGGPVVCNGMLQGIVSWG 212s YGCAERDHPGVYTRVCHYVSWIHETIASV 212s >sp|P32038|CFAD_RAT Complement factor D precursor (EC 3.4.21.46) (C3 convertase activator) (Properdin factor D) (Adipsin) (Endogenous vascular elastase) - Rattus norvegicus (Rat). 212s MHSSVYLVALVVLEAAVCVAQPRGRILGGQEAMAHARPYMASVQVNGTHV 212s CGGTLVDEQWVLSAAHCMDGVTKDEVVQVLLGAHSLSSPEPYKHLYDVQS 212s VVLHPGSRPDSVEDDLMLFKLSHNASLGPHVRPLPLQREDREVKPGTLCD 212s VAGWGVVTHAGRRPDVLQQLTVSIMDRNTCNLRTYHDGAITKNMMCAESN 212s RRDTCRGDSGGPLVCGDAVEAVVTWGSRVCGNRRKPGVFTRVATYVPWIE 212s NVLSGNVSVNVTA 212s >sp|Q7YRZ7|GRAA_BOVIN Granzyme A precursor (EC 3.4.21.78) - Bos taurus (Bovine). 212s MNIPFPFSFPPAICLLLIPGVFPVSCEGIIGGNEVAPHTRRYMALIKGLK 212s LCAGALIKENWVLTAAHCDLKGNPQVILGAHSTSHKEKLDQVFSIKKAIP 212s YPCFDPQTFEGDLQLLQLEGKATMTKAVGILQLPRTEDDVKPHTKCHVAG 212s WGSTKKDACQMSNALREANVTVIDRKICNDAQHYNFNPVIDLSMICAGGR 212s KGEDDSCEGDSGSPLICDNVFRGVTSFGKCGNPQKPGIYILLTKKHLNWI 212s KKTIAGAI 217s autopkgtest [23:27:24]: test run-unit-test: -----------------------] 218s autopkgtest [23:27:25]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 218s run-unit-test PASS 218s autopkgtest [23:27:25]: @@@@@@@@@@@@@@@@@@@@ summary 218s run-unit-test PASS 234s nova [W] Skipping flock for amd64 234s Creating nova instance adt-plucky-amd64-t-coffee-20250315-232346-juju-7f2275-prod-proposed-migration-environment-15-1571d5d5-0602-4408-aa8c-8d681b3c2da6 from image adt/ubuntu-plucky-amd64-server-20250306.img (UUID 60d877d7-b74c-4f24-920d-f4570db0a338)... 234s nova [W] Timed out waiting for 478d5702-bf27-4bae-b369-16bbb8441c4d to get deleted.