0s autopkgtest [19:55:10]: starting date and time: 2024-11-12 19:55:10+0000 0s autopkgtest [19:55:10]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time 0s autopkgtest [19:55:10]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.3xydudky/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:cmake --apt-upgrade seqan-needle --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=cmake/3.31.0-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-72.secgroup --name adt-plucky-amd64-seqan-needle-20241112-195509-juju-7f2275-prod-proposed-migration-environment-2-35021e3d-ec68-4f9b-b398-509560101b4b --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 79s autopkgtest [19:56:29]: testbed dpkg architecture: amd64 79s autopkgtest [19:56:29]: testbed apt version: 2.9.8 79s autopkgtest [19:56:29]: @@@@@@@@@@@@@@@@@@@@ test bed setup 80s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 80s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 80s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [853 kB] 80s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 80s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [88.5 kB] 80s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [79.3 kB] 80s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [125 kB] 80s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 80s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [264 kB] 80s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [636 kB] 80s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [13.0 kB] 80s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [37.7 kB] 80s Fetched 2225 kB in 0s (7167 kB/s) 80s Reading package lists... 83s Reading package lists... 83s Building dependency tree... 83s Reading state information... 83s Calculating upgrade... 84s The following packages will be upgraded: 84s dhcpcd-base dpkg dpkg-dev libarchive13t64 libbpf1 libclang-cpp18 84s libdpkg-perl libedit2 libllvm18 libtss2-esys-3.0.2-0t64 84s libtss2-mu-4.0.1-0t64 libtss2-sys1t64 libtss2-tcti-cmd0t64 84s libtss2-tcti-device0t64 libtss2-tcti-mssim0t64 libtss2-tcti-swtpm0t64 84s python3-cffi-backend python3-zipp 84s 18 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 84s Need to get 45.0 MB of archives. 84s After this operation, 301 kB of additional disk space will be used. 84s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 dpkg amd64 1.22.11ubuntu3 [1346 kB] 84s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 dhcpcd-base amd64 1:10.1.0-2 [250 kB] 84s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libbpf1 amd64 1:1.5.0-1 [194 kB] 84s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2 [89.3 kB] 84s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libedit2 amd64 3.1-20240808-1 [110 kB] 84s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 dpkg-dev all 1.22.11ubuntu3 [1088 kB] 84s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libdpkg-perl all 1.22.11ubuntu3 [279 kB] 84s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive13t64 amd64 3.7.4-1.1 [456 kB] 84s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libclang-cpp18 amd64 1:18.1.8-12 [13.4 MB] 84s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libllvm18 amd64 1:18.1.8-12 [27.4 MB] 84s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libtss2-mu-4.0.1-0t64 amd64 4.1.3-1.2ubuntu1 [62.0 kB] 84s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtss2-tcti-cmd0t64 amd64 4.1.3-1.2ubuntu1 [13.8 kB] 84s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libtss2-tcti-device0t64 amd64 4.1.3-1.2ubuntu1 [14.9 kB] 84s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libtss2-tcti-mssim0t64 amd64 4.1.3-1.2ubuntu1 [15.1 kB] 84s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libtss2-tcti-swtpm0t64 amd64 4.1.3-1.2ubuntu1 [15.2 kB] 84s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libtss2-sys1t64 amd64 4.1.3-1.2ubuntu1 [35.8 kB] 84s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libtss2-esys-3.0.2-0t64 amd64 4.1.3-1.2ubuntu1 [151 kB] 84s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-zipp all 3.21.0-1 [10.2 kB] 85s Fetched 45.0 MB in 0s (93.7 MB/s) 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75552 files and directories currently installed.) 85s Preparing to unpack .../dpkg_1.22.11ubuntu3_amd64.deb ... 85s Unpacking dpkg (1.22.11ubuntu3) over (1.22.11ubuntu1) ... 85s Setting up dpkg (1.22.11ubuntu3) ... 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75552 files and directories currently installed.) 85s Preparing to unpack .../00-dhcpcd-base_1%3a10.1.0-2_amd64.deb ... 85s Unpacking dhcpcd-base (1:10.1.0-2) over (1:10.0.8-3) ... 85s Preparing to unpack .../01-libbpf1_1%3a1.5.0-1_amd64.deb ... 85s Unpacking libbpf1:amd64 (1:1.5.0-1) over (1:1.4.6-1) ... 86s Preparing to unpack .../02-python3-cffi-backend_1.17.1-2_amd64.deb ... 86s Unpacking python3-cffi-backend:amd64 (1.17.1-2) over (1.17.1-1) ... 86s Preparing to unpack .../03-libedit2_3.1-20240808-1_amd64.deb ... 86s Unpacking libedit2:amd64 (3.1-20240808-1) over (3.1-20240517-1) ... 86s Preparing to unpack .../04-dpkg-dev_1.22.11ubuntu3_all.deb ... 86s Unpacking dpkg-dev (1.22.11ubuntu3) over (1.22.11ubuntu1) ... 86s Preparing to unpack .../05-libdpkg-perl_1.22.11ubuntu3_all.deb ... 86s Unpacking libdpkg-perl (1.22.11ubuntu3) over (1.22.11ubuntu1) ... 86s Preparing to unpack .../06-libarchive13t64_3.7.4-1.1_amd64.deb ... 86s Unpacking libarchive13t64:amd64 (3.7.4-1.1) over (3.7.4-1ubuntu1) ... 86s Preparing to unpack .../07-libclang-cpp18_1%3a18.1.8-12_amd64.deb ... 86s Unpacking libclang-cpp18 (1:18.1.8-12) over (1:18.1.8-11) ... 86s Preparing to unpack .../08-libllvm18_1%3a18.1.8-12_amd64.deb ... 86s Unpacking libllvm18:amd64 (1:18.1.8-12) over (1:18.1.8-11) ... 87s Preparing to unpack .../09-libtss2-mu-4.0.1-0t64_4.1.3-1.2ubuntu1_amd64.deb ... 87s Unpacking libtss2-mu-4.0.1-0t64:amd64 (4.1.3-1.2ubuntu1) over (4.1.3-1.1ubuntu1) ... 87s Preparing to unpack .../10-libtss2-tcti-cmd0t64_4.1.3-1.2ubuntu1_amd64.deb ... 87s Unpacking libtss2-tcti-cmd0t64:amd64 (4.1.3-1.2ubuntu1) over (4.1.3-1.1ubuntu1) ... 87s Preparing to unpack .../11-libtss2-tcti-device0t64_4.1.3-1.2ubuntu1_amd64.deb ... 87s Unpacking libtss2-tcti-device0t64:amd64 (4.1.3-1.2ubuntu1) over (4.1.3-1.1ubuntu1) ... 87s Preparing to unpack .../12-libtss2-tcti-mssim0t64_4.1.3-1.2ubuntu1_amd64.deb ... 87s Unpacking libtss2-tcti-mssim0t64:amd64 (4.1.3-1.2ubuntu1) over (4.1.3-1.1ubuntu1) ... 87s Preparing to unpack .../13-libtss2-tcti-swtpm0t64_4.1.3-1.2ubuntu1_amd64.deb ... 87s Unpacking libtss2-tcti-swtpm0t64:amd64 (4.1.3-1.2ubuntu1) over (4.1.3-1.1ubuntu1) ... 87s Preparing to unpack .../14-libtss2-sys1t64_4.1.3-1.2ubuntu1_amd64.deb ... 87s Unpacking libtss2-sys1t64:amd64 (4.1.3-1.2ubuntu1) over (4.1.3-1.1ubuntu1) ... 87s Preparing to unpack .../15-libtss2-esys-3.0.2-0t64_4.1.3-1.2ubuntu1_amd64.deb ... 87s Unpacking libtss2-esys-3.0.2-0t64:amd64 (4.1.3-1.2ubuntu1) over (4.1.3-1.1ubuntu1) ... 87s Preparing to unpack .../16-python3-zipp_3.21.0-1_all.deb ... 87s Unpacking python3-zipp (3.21.0-1) over (3.20.2-1) ... 87s Setting up libedit2:amd64 (3.1-20240808-1) ... 87s Setting up libtss2-mu-4.0.1-0t64:amd64 (4.1.3-1.2ubuntu1) ... 87s Setting up python3-zipp (3.21.0-1) ... 87s Setting up libtss2-sys1t64:amd64 (4.1.3-1.2ubuntu1) ... 87s Setting up libtss2-tcti-device0t64:amd64 (4.1.3-1.2ubuntu1) ... 87s Setting up dhcpcd-base (1:10.1.0-2) ... 87s Setting up libdpkg-perl (1.22.11ubuntu3) ... 87s Setting up libtss2-tcti-mssim0t64:amd64 (4.1.3-1.2ubuntu1) ... 87s Setting up libtss2-tcti-cmd0t64:amd64 (4.1.3-1.2ubuntu1) ... 87s Setting up libtss2-tcti-swtpm0t64:amd64 (4.1.3-1.2ubuntu1) ... 87s Setting up libarchive13t64:amd64 (3.7.4-1.1) ... 87s Setting up libbpf1:amd64 (1:1.5.0-1) ... 87s Setting up python3-cffi-backend:amd64 (1.17.1-2) ... 87s Setting up libllvm18:amd64 (1:18.1.8-12) ... 87s Setting up dpkg-dev (1.22.11ubuntu3) ... 87s Setting up libtss2-esys-3.0.2-0t64:amd64 (4.1.3-1.2ubuntu1) ... 87s Setting up libclang-cpp18 (1:18.1.8-12) ... 87s Processing triggers for man-db (2.12.1-3) ... 89s Processing triggers for libc-bin (2.40-1ubuntu3) ... 90s Reading package lists... 90s Building dependency tree... 90s Reading state information... 90s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 91s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 91s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 91s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 91s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 92s Reading package lists... 92s Reading package lists... 92s Building dependency tree... 92s Reading state information... 93s Calculating upgrade... 93s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 93s Reading package lists... 93s Building dependency tree... 93s Reading state information... 94s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 94s autopkgtest [19:56:44]: rebooting testbed after setup commands that affected boot 98s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 109s autopkgtest [19:56:59]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 110s autopkgtest [19:57:00]: @@@@@@@@@@@@@@@@@@@@ apt-source seqan-needle 112s Get:1 http://ftpmaster.internal/ubuntu plucky/universe seqan-needle 1.0.2+ds-2 (dsc) [2275 B] 112s Get:2 http://ftpmaster.internal/ubuntu plucky/universe seqan-needle 1.0.2+ds-2 (tar) [5049 kB] 112s Get:3 http://ftpmaster.internal/ubuntu plucky/universe seqan-needle 1.0.2+ds-2 (diff) [6484 B] 112s gpgv: Signature made Mon Jan 8 18:55:15 2024 UTC 112s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 112s gpgv: issuer "tillea@rki.de" 112s gpgv: Can't check signature: No public key 112s dpkg-source: warning: cannot verify inline signature for ./seqan-needle_1.0.2+ds-2.dsc: no acceptable signature found 112s autopkgtest [19:57:02]: testing package seqan-needle version 1.0.2+ds-2 112s autopkgtest [19:57:02]: build not needed 113s autopkgtest [19:57:03]: test run-unit-tests: preparing testbed 114s Reading package lists... 114s Building dependency tree... 114s Reading state information... 115s Starting pkgProblemResolver with broken count: 0 115s Starting 2 pkgProblemResolver with broken count: 0 115s Done 115s The following additional packages will be installed: 115s build-essential cmake cmake-data cpp cpp-14 cpp-14-x86-64-linux-gnu 115s cpp-x86-64-linux-gnu g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu 115s gcc gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu googletest libasan8 115s libbz2-dev libcc1-0 libcereal-dev libgcc-14-dev libgomp1 libgtest-dev 115s libhwasan0 libisl23 libitm1 libjsoncpp26 liblsan0 libmpc3 libquadmath0 115s librhash1 libseqan3-dev libstdc++-14-dev libtsan2 libubsan1 rapidjson-dev 115s zlib1g-dev 115s Suggested packages: 115s cmake-doc cmake-format elpa-cmake-mode ninja-build cpp-doc gcc-14-locales 115s cpp-14-doc g++-multilib g++-14-multilib gcc-14-doc gcc-multilib manpages-dev 115s autoconf automake libtool flex bison gdb gcc-doc gcc-14-multilib 115s gdb-x86-64-linux-gnu libstdc++-14-doc rapidjson-doc 115s Recommended packages: 115s bzip2-doc 115s The following NEW packages will be installed: 115s autopkgtest-satdep build-essential cmake cmake-data cpp cpp-14 115s cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu g++ g++-14 115s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 115s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu googletest libasan8 libbz2-dev 115s libcc1-0 libcereal-dev libgcc-14-dev libgomp1 libgtest-dev libhwasan0 115s libisl23 libitm1 libjsoncpp26 liblsan0 libmpc3 libquadmath0 librhash1 115s libseqan3-dev libstdc++-14-dev libtsan2 libubsan1 rapidjson-dev zlib1g-dev 115s 0 upgraded, 38 newly installed, 0 to remove and 0 not upgraded. 115s Need to get 83.4 MB/83.4 MB of archives. 115s After this operation, 292 MB of additional disk space will be used. 115s Get:1 /tmp/autopkgtest.VqvZe4/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [736 B] 115s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 115s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 115s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-7ubuntu1 [11.9 MB] 116s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-7ubuntu1 [1026 B] 116s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 116s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 116s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-7ubuntu1 [47.6 kB] 116s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-7ubuntu1 [148 kB] 116s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-7ubuntu1 [29.1 kB] 116s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-7ubuntu1 [2998 kB] 116s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-7ubuntu1 [1316 kB] 116s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-7ubuntu1 [2733 kB] 116s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-7ubuntu1 [1177 kB] 116s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-7ubuntu1 [1634 kB] 116s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-7ubuntu1 [153 kB] 116s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-7ubuntu1 [2814 kB] 116s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-7ubuntu1 [23.4 MB] 116s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-7ubuntu1 [526 kB] 116s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 116s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 116s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-7ubuntu1 [2503 kB] 116s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-7ubuntu1 [13.4 MB] 116s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-7ubuntu1 [19.8 kB] 116s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 116s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 116s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 116s Get:28 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 cmake-data all 3.31.0-1 [2290 kB] 116s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libjsoncpp26 amd64 1.9.6-2 [89.9 kB] 116s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 librhash1 amd64 1.4.5-1 [132 kB] 116s Get:31 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 cmake amd64 3.31.0-1 [12.6 MB] 116s Get:32 http://ftpmaster.internal/ubuntu plucky/universe amd64 googletest all 1.15.2-1 [523 kB] 116s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 116s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 rapidjson-dev all 1.1.0+dfsg2-7.3 [96.9 kB] 116s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcereal-dev amd64 1.3.2+dfsg-5 [222 kB] 116s Get:36 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgtest-dev amd64 1.15.2-1 [276 kB] 116s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 116s Get:38 http://ftpmaster.internal/ubuntu plucky/universe amd64 libseqan3-dev all 3.3.0+ds-2 [747 kB] 116s Fetched 83.4 MB in 1s (124 MB/s) 116s Selecting previously unselected package libisl23:amd64. 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75553 files and directories currently installed.) 117s Preparing to unpack .../00-libisl23_0.27-1_amd64.deb ... 117s Unpacking libisl23:amd64 (0.27-1) ... 117s Selecting previously unselected package libmpc3:amd64. 117s Preparing to unpack .../01-libmpc3_1.3.1-1build2_amd64.deb ... 117s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 117s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 117s Preparing to unpack .../02-cpp-14-x86-64-linux-gnu_14.2.0-7ubuntu1_amd64.deb ... 117s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-7ubuntu1) ... 117s Selecting previously unselected package cpp-14. 117s Preparing to unpack .../03-cpp-14_14.2.0-7ubuntu1_amd64.deb ... 117s Unpacking cpp-14 (14.2.0-7ubuntu1) ... 117s Selecting previously unselected package cpp-x86-64-linux-gnu. 117s Preparing to unpack .../04-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 117s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 117s Selecting previously unselected package cpp. 117s Preparing to unpack .../05-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ... 117s Unpacking cpp (4:14.1.0-2ubuntu1) ... 117s Selecting previously unselected package libcc1-0:amd64. 117s Preparing to unpack .../06-libcc1-0_14.2.0-7ubuntu1_amd64.deb ... 117s Unpacking libcc1-0:amd64 (14.2.0-7ubuntu1) ... 117s Selecting previously unselected package libgomp1:amd64. 117s Preparing to unpack .../07-libgomp1_14.2.0-7ubuntu1_amd64.deb ... 117s Unpacking libgomp1:amd64 (14.2.0-7ubuntu1) ... 117s Selecting previously unselected package libitm1:amd64. 117s Preparing to unpack .../08-libitm1_14.2.0-7ubuntu1_amd64.deb ... 117s Unpacking libitm1:amd64 (14.2.0-7ubuntu1) ... 117s Selecting previously unselected package libasan8:amd64. 117s Preparing to unpack .../09-libasan8_14.2.0-7ubuntu1_amd64.deb ... 117s Unpacking libasan8:amd64 (14.2.0-7ubuntu1) ... 117s Selecting previously unselected package liblsan0:amd64. 117s Preparing to unpack .../10-liblsan0_14.2.0-7ubuntu1_amd64.deb ... 117s Unpacking liblsan0:amd64 (14.2.0-7ubuntu1) ... 117s Selecting previously unselected package libtsan2:amd64. 117s Preparing to unpack .../11-libtsan2_14.2.0-7ubuntu1_amd64.deb ... 117s Unpacking libtsan2:amd64 (14.2.0-7ubuntu1) ... 117s Selecting previously unselected package libubsan1:amd64. 117s Preparing to unpack .../12-libubsan1_14.2.0-7ubuntu1_amd64.deb ... 117s Unpacking libubsan1:amd64 (14.2.0-7ubuntu1) ... 117s Selecting previously unselected package libhwasan0:amd64. 117s Preparing to unpack .../13-libhwasan0_14.2.0-7ubuntu1_amd64.deb ... 117s Unpacking libhwasan0:amd64 (14.2.0-7ubuntu1) ... 117s Selecting previously unselected package libquadmath0:amd64. 117s Preparing to unpack .../14-libquadmath0_14.2.0-7ubuntu1_amd64.deb ... 117s Unpacking libquadmath0:amd64 (14.2.0-7ubuntu1) ... 117s Selecting previously unselected package libgcc-14-dev:amd64. 118s Preparing to unpack .../15-libgcc-14-dev_14.2.0-7ubuntu1_amd64.deb ... 118s Unpacking libgcc-14-dev:amd64 (14.2.0-7ubuntu1) ... 118s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 118s Preparing to unpack .../16-gcc-14-x86-64-linux-gnu_14.2.0-7ubuntu1_amd64.deb ... 118s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-7ubuntu1) ... 118s Selecting previously unselected package gcc-14. 118s Preparing to unpack .../17-gcc-14_14.2.0-7ubuntu1_amd64.deb ... 118s Unpacking gcc-14 (14.2.0-7ubuntu1) ... 118s Selecting previously unselected package gcc-x86-64-linux-gnu. 118s Preparing to unpack .../18-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 118s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 118s Selecting previously unselected package gcc. 118s Preparing to unpack .../19-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ... 118s Unpacking gcc (4:14.1.0-2ubuntu1) ... 118s Selecting previously unselected package libstdc++-14-dev:amd64. 118s Preparing to unpack .../20-libstdc++-14-dev_14.2.0-7ubuntu1_amd64.deb ... 118s Unpacking libstdc++-14-dev:amd64 (14.2.0-7ubuntu1) ... 118s Selecting previously unselected package g++-14-x86-64-linux-gnu. 118s Preparing to unpack .../21-g++-14-x86-64-linux-gnu_14.2.0-7ubuntu1_amd64.deb ... 118s Unpacking g++-14-x86-64-linux-gnu (14.2.0-7ubuntu1) ... 119s Selecting previously unselected package g++-14. 119s Preparing to unpack .../22-g++-14_14.2.0-7ubuntu1_amd64.deb ... 119s Unpacking g++-14 (14.2.0-7ubuntu1) ... 119s Selecting previously unselected package g++-x86-64-linux-gnu. 119s Preparing to unpack .../23-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 119s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 119s Selecting previously unselected package g++. 119s Preparing to unpack .../24-g++_4%3a14.1.0-2ubuntu1_amd64.deb ... 119s Unpacking g++ (4:14.1.0-2ubuntu1) ... 119s Selecting previously unselected package build-essential. 119s Preparing to unpack .../25-build-essential_12.10ubuntu1_amd64.deb ... 119s Unpacking build-essential (12.10ubuntu1) ... 119s Selecting previously unselected package cmake-data. 119s Preparing to unpack .../26-cmake-data_3.31.0-1_all.deb ... 119s Unpacking cmake-data (3.31.0-1) ... 119s Selecting previously unselected package libjsoncpp26:amd64. 119s Preparing to unpack .../27-libjsoncpp26_1.9.6-2_amd64.deb ... 119s Unpacking libjsoncpp26:amd64 (1.9.6-2) ... 119s Selecting previously unselected package librhash1:amd64. 119s Preparing to unpack .../28-librhash1_1.4.5-1_amd64.deb ... 119s Unpacking librhash1:amd64 (1.4.5-1) ... 119s Selecting previously unselected package cmake. 119s Preparing to unpack .../29-cmake_3.31.0-1_amd64.deb ... 119s Unpacking cmake (3.31.0-1) ... 120s Selecting previously unselected package googletest. 120s Preparing to unpack .../30-googletest_1.15.2-1_all.deb ... 120s Unpacking googletest (1.15.2-1) ... 120s Selecting previously unselected package libbz2-dev:amd64. 120s Preparing to unpack .../31-libbz2-dev_1.0.8-6_amd64.deb ... 120s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 120s Selecting previously unselected package rapidjson-dev. 120s Preparing to unpack .../32-rapidjson-dev_1.1.0+dfsg2-7.3_all.deb ... 120s Unpacking rapidjson-dev (1.1.0+dfsg2-7.3) ... 120s Selecting previously unselected package libcereal-dev. 120s Preparing to unpack .../33-libcereal-dev_1.3.2+dfsg-5_amd64.deb ... 120s Unpacking libcereal-dev (1.3.2+dfsg-5) ... 120s Selecting previously unselected package libgtest-dev:amd64. 120s Preparing to unpack .../34-libgtest-dev_1.15.2-1_amd64.deb ... 120s Unpacking libgtest-dev:amd64 (1.15.2-1) ... 120s Selecting previously unselected package zlib1g-dev:amd64. 120s Preparing to unpack .../35-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 120s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 120s Selecting previously unselected package libseqan3-dev. 120s Preparing to unpack .../36-libseqan3-dev_3.3.0+ds-2_all.deb ... 120s Unpacking libseqan3-dev (3.3.0+ds-2) ... 120s Selecting previously unselected package autopkgtest-satdep. 120s Preparing to unpack .../37-1-autopkgtest-satdep.deb ... 120s Unpacking autopkgtest-satdep (0) ... 120s Setting up libgomp1:amd64 (14.2.0-7ubuntu1) ... 120s Setting up googletest (1.15.2-1) ... 120s Setting up rapidjson-dev (1.1.0+dfsg2-7.3) ... 120s Setting up libjsoncpp26:amd64 (1.9.6-2) ... 120s Setting up libquadmath0:amd64 (14.2.0-7ubuntu1) ... 120s Setting up libmpc3:amd64 (1.3.1-1build2) ... 120s Setting up libubsan1:amd64 (14.2.0-7ubuntu1) ... 120s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 120s Setting up libhwasan0:amd64 (14.2.0-7ubuntu1) ... 120s Setting up libasan8:amd64 (14.2.0-7ubuntu1) ... 120s Setting up cmake-data (3.31.0-1) ... 120s Setting up librhash1:amd64 (1.4.5-1) ... 120s Setting up libtsan2:amd64 (14.2.0-7ubuntu1) ... 120s Setting up libisl23:amd64 (0.27-1) ... 120s Setting up libcc1-0:amd64 (14.2.0-7ubuntu1) ... 120s Setting up liblsan0:amd64 (14.2.0-7ubuntu1) ... 120s Setting up libitm1:amd64 (14.2.0-7ubuntu1) ... 120s Setting up libbz2-dev:amd64 (1.0.8-6) ... 120s Setting up libgtest-dev:amd64 (1.15.2-1) ... 120s Setting up libcereal-dev (1.3.2+dfsg-5) ... 120s Setting up cpp-14-x86-64-linux-gnu (14.2.0-7ubuntu1) ... 120s Setting up cpp-14 (14.2.0-7ubuntu1) ... 120s Setting up cmake (3.31.0-1) ... 120s Setting up libgcc-14-dev:amd64 (14.2.0-7ubuntu1) ... 120s Setting up libstdc++-14-dev:amd64 (14.2.0-7ubuntu1) ... 120s Setting up cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 120s Setting up libseqan3-dev (3.3.0+ds-2) ... 120s Setting up cpp (4:14.1.0-2ubuntu1) ... 120s Setting up gcc-14-x86-64-linux-gnu (14.2.0-7ubuntu1) ... 120s Setting up gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 120s Setting up gcc-14 (14.2.0-7ubuntu1) ... 120s Setting up g++-14-x86-64-linux-gnu (14.2.0-7ubuntu1) ... 120s Setting up g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 120s Setting up g++-14 (14.2.0-7ubuntu1) ... 120s Setting up gcc (4:14.1.0-2ubuntu1) ... 120s Setting up g++ (4:14.1.0-2ubuntu1) ... 120s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 120s Setting up build-essential (12.10ubuntu1) ... 120s Setting up autopkgtest-satdep (0) ... 120s Processing triggers for man-db (2.12.1-3) ... 121s Processing triggers for libc-bin (2.40-1ubuntu3) ... 124s (Reading database ... 81836 files and directories currently installed.) 124s Removing autopkgtest-satdep (0) ... 124s autopkgtest [19:57:14]: test run-unit-tests: [----------------------- 125s -- The C compiler identification is GNU 14.2.0 125s -- The CXX compiler identification is GNU 14.2.0 125s -- Detecting C compiler ABI info 125s -- Detecting C compiler ABI info - done 125s -- Check for working C compiler: /usr/bin/cc - skipped 125s -- Detecting C compile features 125s -- Detecting C compile features - done 125s -- Detecting CXX compiler ABI info 125s -- Detecting CXX compiler ABI info - done 125s -- Check for working CXX compiler: /usr/bin/c++ - skipped 125s -- Detecting CXX compile features 125s -- Detecting CXX compile features - done 127s CMake Deprecation Warning at lib/robin-hood-hashing/CMakeLists.txt:1 (cmake_minimum_required): 127s Compatibility with CMake < 3.10 will be removed from a future version of 127s CMake. 127s 127s Update the VERSION argument value or use a ... suffix to tell 127s CMake that the project does not need compatibility with older versions. 127s 127s 127s CMake Deprecation Warning at src/CMakeLists.txt:1 (cmake_minimum_required): 127s Compatibility with CMake < 3.10 will be removed from a future version of 127s CMake. 127s 127s Update the VERSION argument value or use a ... suffix to tell 127s CMake that the project does not need compatibility with older versions. 127s 127s 128s -- Found OpenMP_C: -fopenmp (found version "4.5") 128s -- Found OpenMP_CXX: -fopenmp (found version "4.5") 128s -- Found OpenMP: TRUE (found version "4.5") 128s -- You can run `make` to build the application. 128s CMake Deprecation Warning at doc/CMakeLists.txt:1 (cmake_minimum_required): 128s Compatibility with CMake < 3.10 will be removed from a future version of 128s CMake. 128s 128s Update the VERSION argument value or use a ... suffix to tell 128s CMake that the project does not need compatibility with older versions. 128s 128s 128s -- Doxygen not found. 128s CMake Deprecation Warning at test/CMakeLists.txt:1 (cmake_minimum_required): 128s Compatibility with CMake < 3.10 will be removed from a future version of 128s CMake. 128s 128s Update the VERSION argument value or use a ... suffix to tell 128s CMake that the project does not need compatibility with older versions. 128s 128s 128s CMake Deprecation Warning at test/data/datasources.cmake:1 (cmake_minimum_required): 128s Compatibility with CMake < 3.10 will be removed from a future version of 128s CMake. 128s 128s Update the VERSION argument value or use a ... suffix to tell 128s CMake that the project does not need compatibility with older versions. 128s Call Stack (most recent call first): 128s test/CMakeLists.txt:98 (include) 128s 128s 128s CMake Deprecation Warning at test/api/CMakeLists.txt:1 (cmake_minimum_required): 128s Compatibility with CMake < 3.10 will be removed from a future version of 128s CMake. 128s 128s Update the VERSION argument value or use a ... suffix to tell 128s CMake that the project does not need compatibility with older versions. 128s 128s 128s CMake Deprecation Warning at test/cli/CMakeLists.txt:1 (cmake_minimum_required): 128s Compatibility with CMake < 3.10 will be removed from a future version of 128s CMake. 128s 128s Update the VERSION argument value or use a ... suffix to tell 128s CMake that the project does not need compatibility with older versions. 128s 128s 128s CMake Deprecation Warning at test/coverage/CMakeLists.txt:1 (cmake_minimum_required): 128s Compatibility with CMake < 3.10 will be removed from a future version of 128s CMake. 128s 128s Update the VERSION argument value or use a ... suffix to tell 128s CMake that the project does not need compatibility with older versions. 128s 128s 128s -- You can run `make test` to build and run tests. 128s -- Configuring done (3.5s) 128s -- Generating done (0.1s) 128s -- Build files have been written to: /tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests 128s Running tests... 128s Test project /tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests 128s gmake[1]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests/test' 128s gmake[2]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 128s gmake[3]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 128s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 128s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 128s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 128s [ 6%] Building CXX object src/CMakeFiles/needle_lib.dir/ibf.cpp.o 133s /tmp/autopkgtest.VqvZe4/build.C3J/src/src/ibf.cpp: In function ‘void fill_hash_table_parallel(const min_arguments&, seqan3::sequence_file_input >&, robin_hood::unordered_node_map&, robin_hood::unordered_node_map&, robin_hood::unordered_set&, robin_hood::unordered_set&, bool, uint8_t)’: 133s /tmp/autopkgtest.VqvZe4/build.C3J/src/src/ibf.cpp:242:38: warning: narrowing conversion of ‘thread_count’ from ‘size_t’ {aka ‘long unsigned int’} to ‘ptrdiff_t’ {aka ‘long int’} [-Wnarrowing] 133s 242 | seqan3::detail::latch sync_point{thread_count}; 133s | ^~~~~~~~~~~~ 133s /tmp/autopkgtest.VqvZe4/build.C3J/src/src/ibf.cpp:243:40: warning: narrowing conversion of ‘thread_count’ from ‘size_t’ {aka ‘long unsigned int’} to ‘ptrdiff_t’ {aka ‘long int’} [-Wnarrowing] 133s 243 | seqan3::detail::latch sync_point_2{thread_count}; 133s | ^~~~~~~~~~~~ 153s [ 13%] Building CXX object src/CMakeFiles/needle_lib.dir/estimate.cpp.o 172s [ 20%] Linking CXX static library ../lib/libneedle_lib.a 172s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 172s [ 20%] Built target needle_lib 172s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 172s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 172s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 172s [ 26%] Building CXX object test/api/CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o 186s [ 33%] Linking CXX executable minimiser_test 186s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 186s [ 33%] Built target minimiser_test 186s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 186s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 186s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 186s [ 40%] Building CXX object test/api/CMakeFiles/count_test.dir/count_test.cpp.o 194s [ 46%] Linking CXX executable count_test 194s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 194s [ 46%] Built target count_test 194s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 194s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 194s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 194s [ 53%] Building CXX object test/api/CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o 206s [ 60%] Linking CXX executable insert_delete_test 206s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 206s [ 60%] Built target insert_delete_test 206s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 206s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 206s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 206s [ 66%] Building CXX object test/api/CMakeFiles/estimate_test.dir/estimate_test.cpp.o 215s [ 73%] Linking CXX executable estimate_test 216s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 216s [ 73%] Built target estimate_test 216s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 216s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 216s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 216s [ 80%] Building CXX object test/api/CMakeFiles/ibf_test.dir/ibf_test.cpp.o 228s [ 86%] Linking CXX executable ibf_test 228s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 228s [ 86%] Built target ibf_test 228s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 228s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 228s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 228s [ 93%] Building CXX object test/api/CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o 239s [100%] Linking CXX executable ibfmin_test 240s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 240s [100%] Built target ibfmin_test 240s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 240s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 240s [100%] Built target api_test 240s gmake[3]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 240s gmake[2]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 240s gmake[1]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests/test' 240s gmake[1]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests/test' 240s gmake[2]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 240s gmake[3]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 240s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 240s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 240s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 240s [ 1%] Creating directories for 'datasource--exp_01.fasta' 240s [ 2%] Performing download step (verify) for 'datasource--exp_01.fasta' 240s -- verifying file... 240s file='/tmp/autopkgtest.VqvZe4/build.C3J/src/test/data/exp_01.fasta' 240s -- verifying file... done 240s [ 4%] No update step for 'datasource--exp_01.fasta' 240s [ 5%] No patch step for 'datasource--exp_01.fasta' 240s [ 7%] No configure step for 'datasource--exp_01.fasta' 240s [ 8%] No build step for 'datasource--exp_01.fasta' 240s [ 9%] Performing install step for 'datasource--exp_01.fasta' 240s [ 11%] No test step for 'datasource--exp_01.fasta' 240s [ 12%] Completed 'datasource--exp_01.fasta' 240s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 240s [ 12%] Built target datasource--exp_01.fasta 240s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 240s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 240s [ 16%] Built target needle_lib 240s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 240s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 240s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 240s [ 18%] Building CXX object src/CMakeFiles/needle.dir/main.cpp.o 264s [ 19%] Linking CXX executable ../bin/needle 264s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 264s [ 19%] Built target needle 264s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 264s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 264s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 264s [ 21%] Building CXX object test/cli/CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o 273s [ 22%] Linking CXX executable delete_options_test 273s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 273s [ 22%] Built target delete_options_test 273s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 273s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 273s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 273s [ 23%] Building CXX object test/cli/CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o 276s [ 25%] Linking CXX executable needle_options_test 276s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 276s [ 25%] Built target needle_options_test 276s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 276s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 276s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 276s [ 26%] Creating directories for 'datasource--mini_example.minimiser' 276s [ 26%] Performing download step (verify) for 'datasource--mini_example.minimiser' 276s -- verifying file... 276s file='/tmp/autopkgtest.VqvZe4/build.C3J/src/test/data/mini_example.minimiser' 276s -- verifying file... done 276s [ 28%] No update step for 'datasource--mini_example.minimiser' 276s [ 29%] No patch step for 'datasource--mini_example.minimiser' 276s [ 30%] No configure step for 'datasource--mini_example.minimiser' 276s [ 32%] No build step for 'datasource--mini_example.minimiser' 276s [ 33%] Performing install step for 'datasource--mini_example.minimiser' 276s [ 35%] No test step for 'datasource--mini_example.minimiser' 276s [ 36%] Completed 'datasource--mini_example.minimiser' 276s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 276s [ 36%] Built target datasource--mini_example.minimiser 276s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 276s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 276s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 276s [ 38%] Creating directories for 'datasource--mini_example.fasta' 276s [ 39%] Performing download step (verify) for 'datasource--mini_example.fasta' 276s -- verifying file... 276s file='/tmp/autopkgtest.VqvZe4/build.C3J/src/test/data/mini_example.fasta' 276s -- verifying file... done 276s [ 40%] No update step for 'datasource--mini_example.fasta' 276s [ 42%] No patch step for 'datasource--mini_example.fasta' 276s [ 43%] No configure step for 'datasource--mini_example.fasta' 276s [ 45%] No build step for 'datasource--mini_example.fasta' 276s [ 46%] Performing install step for 'datasource--mini_example.fasta' 276s [ 47%] No test step for 'datasource--mini_example.fasta' 276s [ 49%] Completed 'datasource--mini_example.fasta' 276s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 276s [ 49%] Built target datasource--mini_example.fasta 276s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 276s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 276s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 276s [ 50%] Building CXX object test/cli/CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o 280s [ 52%] Linking CXX executable ibf_options_test 280s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 280s [ 52%] Built target ibf_options_test 280s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 280s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 280s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 280s [ 53%] Building CXX object test/cli/CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o 289s [ 54%] Linking CXX executable insert_options_test 289s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 289s [ 54%] Built target insert_options_test 289s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 289s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 289s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 289s [ 56%] Building CXX object test/cli/CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o 293s [ 57%] Linking CXX executable minimiser_options_test 293s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 293s [ 57%] Built target minimiser_options_test 293s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 293s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 293s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 293s [ 59%] Creating directories for 'datasource--mini_gen.fasta' 293s [ 60%] Performing download step (verify) for 'datasource--mini_gen.fasta' 293s -- verifying file... 293s file='/tmp/autopkgtest.VqvZe4/build.C3J/src/test/data/mini_gen.fasta' 293s -- verifying file... done 293s [ 61%] No update step for 'datasource--mini_gen.fasta' 293s [ 63%] No patch step for 'datasource--mini_gen.fasta' 293s [ 64%] No configure step for 'datasource--mini_gen.fasta' 293s [ 66%] No build step for 'datasource--mini_gen.fasta' 293s [ 67%] Performing install step for 'datasource--mini_gen.fasta' 293s [ 69%] No test step for 'datasource--mini_gen.fasta' 293s [ 70%] Completed 'datasource--mini_gen.fasta' 293s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 293s [ 70%] Built target datasource--mini_gen.fasta 293s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 293s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 293s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 293s [ 71%] Creating directories for 'datasource--ibf_1' 293s [ 73%] Performing download step (verify) for 'datasource--ibf_1' 293s -- verifying file... 293s file='/tmp/autopkgtest.VqvZe4/build.C3J/src/test/data/IBF_1' 293s -- verifying file... done 293s [ 74%] No update step for 'datasource--ibf_1' 293s [ 76%] No patch step for 'datasource--ibf_1' 293s [ 77%] No configure step for 'datasource--ibf_1' 293s [ 78%] No build step for 'datasource--ibf_1' 293s [ 80%] Performing install step for 'datasource--ibf_1' 293s [ 81%] No test step for 'datasource--ibf_1' 293s [ 83%] Completed 'datasource--ibf_1' 293s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 293s [ 83%] Built target datasource--ibf_1 293s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 293s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 293s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 293s [ 84%] Building CXX object test/cli/CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o 302s [ 85%] Linking CXX executable estimate_options_test 302s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 303s [ 85%] Built target estimate_options_test 303s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 303s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 303s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 303s [ 87%] Creating directories for 'datasource--mini_gen.genome' 303s [ 88%] Performing download step (verify) for 'datasource--mini_gen.genome' 303s -- verifying file... 303s file='/tmp/autopkgtest.VqvZe4/build.C3J/src/test/data/mini_gen.genome' 303s -- verifying file... done 303s [ 90%] No update step for 'datasource--mini_gen.genome' 303s [ 91%] No patch step for 'datasource--mini_gen.genome' 303s [ 92%] No configure step for 'datasource--mini_gen.genome' 303s [ 94%] No build step for 'datasource--mini_gen.genome' 303s [ 95%] Performing install step for 'datasource--mini_gen.genome' 303s [ 97%] No test step for 'datasource--mini_gen.genome' 303s [ 98%] Completed 'datasource--mini_gen.genome' 303s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 303s [ 98%] Built target datasource--mini_gen.genome 303s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 303s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 303s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 303s [ 98%] Building CXX object test/cli/CMakeFiles/count_options_test.dir/count_options_test.cpp.o 307s [100%] Linking CXX executable count_options_test 307s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 307s [100%] Built target count_options_test 307s gmake[4]: Entering directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 307s gmake[4]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 307s [100%] Built target cli_test 307s gmake[3]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 307s gmake[2]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests' 307s gmake[1]: Leaving directory '/tmp/autopkgtest.VqvZe4/build.C3J/src/build-tests/test' 307s Start 1: test/api/count_test 307s 1/13 Test #1: test/api/count_test ............... Passed 0.01 sec 307s Start 2: test/api/insert_delete_test 307s 2/13 Test #2: test/api/insert_delete_test ....... Passed 0.02 sec 307s Start 3: test/api/estimate_test 316s 3/13 Test #3: test/api/estimate_test ............ Passed 9.13 sec 316s Start 4: test/api/ibf_test 318s 4/13 Test #4: test/api/ibf_test ................. Passed 2.38 sec 318s Start 5: test/api/ibfmin_test 318s 5/13 Test #5: test/api/ibfmin_test .............. Passed 0.01 sec 318s Start 6: test/api/minimiser_test 318s 6/13 Test #6: test/api/minimiser_test ........... Passed 0.01 sec 318s Start 7: test/cli/needle_options_test 318s 7/13 Test #7: test/cli/needle_options_test ...... Passed 0.01 sec 318s Start 8: test/cli/ibf_options_test 330s 8/13 Test #8: test/cli/ibf_options_test ......... Passed 11.23 sec 330s Start 9: test/cli/insert_options_test 335s 9/13 Test #9: test/cli/insert_options_test ...... Passed 5.79 sec 335s Start 10: test/cli/minimiser_options_test 336s 10/13 Test #10: test/cli/minimiser_options_test ... Passed 0.04 sec 336s Start 11: test/cli/estimate_options_test 356s 11/13 Test #11: test/cli/estimate_options_test .... Passed 20.72 sec 356s Start 12: test/cli/count_options_test 356s 12/13 Test #12: test/cli/count_options_test ....... Passed 0.05 sec 356s Start 13: test/cli/delete_options_test 367s 13/13 Test #13: test/cli/delete_options_test ...... Passed 10.23 sec 367s 367s 100% tests passed, 0 tests failed out of 13 367s 367s Total Test time (real) = 238.47 sec 367s autopkgtest [20:01:17]: test run-unit-tests: -----------------------] 367s run-unit-tests PASS 367s autopkgtest [20:01:17]: test run-unit-tests: - - - - - - - - - - results - - - - - - - - - - 367s autopkgtest [20:01:17]: @@@@@@@@@@@@@@@@@@@@ summary 367s run-unit-tests PASS 379s virt: nova [W] Skipping flock for amd64 379s virt: Creating nova instance adt-plucky-amd64-seqan-needle-20241112-195509-juju-7f2275-prod-proposed-migration-environment-2-35021e3d-ec68-4f9b-b398-509560101b4b from image adt/ubuntu-plucky-amd64-server-20241111.img (UUID 16cfd7cb-b672-4e72-8116-aeed04ab05a8)...