0s autopkgtest [22:47:05]: starting date and time: 2025-03-15 22:47:05+0000 0s autopkgtest [22:47:05]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [22:47:05]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1hnyzf9z/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade relion --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-12.secgroup --name adt-plucky-amd64-relion-20250315-224705-juju-7f2275-prod-proposed-migration-environment-15-591f9918-823e-4f86-a922-12d919d5018c --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 51s autopkgtest [22:47:56]: testbed dpkg architecture: amd64 51s autopkgtest [22:47:56]: testbed apt version: 2.9.31ubuntu1 52s autopkgtest [22:47:57]: @@@@@@@@@@@@@@@@@@@@ test bed setup 52s autopkgtest [22:47:57]: testbed release detected to be: None 53s autopkgtest [22:47:58]: updating testbed package index (apt update) 53s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 54s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 54s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 54s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 54s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 54s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 54s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 54s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 54s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 54s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 54s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 54s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 54s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 54s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 54s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 54s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 54s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 54s Fetched 1265 kB in 1s (1401 kB/s) 55s Reading package lists... 56s + lsb_release --codename --short 56s Reading package lists... 56s Building dependency tree...+ RELEASE=plucky 56s + cat 56s + [ plucky != trusty ] 56s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 56s 56s Reading state information... 56s Calculating upgrade... 57s Calculating upgrade... 57s The following package was automatically installed and is no longer required: 57s libnl-genl-3-200 57s Use 'sudo apt autoremove' to remove it. 57s The following NEW packages will be installed: 57s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 57s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 57s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 57s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 57s The following packages will be upgraded: 57s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 57s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base 57s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools 57s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0 57s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 57s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0 57s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1 57s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64 57s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6 57s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200 57s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib 57s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2 57s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 57s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 57s linux-firmware linux-generic linux-headers-generic linux-headers-virtual 57s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 57s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 57s parted pci.ids pciutils pinentry-curses python-apt-common python3 57s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi 57s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal 57s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13 57s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd 57s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd 57s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail 57s xz-utils 57s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 57s Need to get 829 MB of archives. 57s After this operation, 325 MB of additional disk space will be used. 57s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 57s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 57s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 58s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 58s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 58s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 58s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 58s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 58s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 58s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 58s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 58s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 58s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 58s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 58s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 58s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 58s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 58s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 58s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 58s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 58s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 58s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 58s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 58s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 58s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 58s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 58s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 58s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 58s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 58s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 58s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 58s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 58s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 58s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 58s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 58s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 58s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 58s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 59s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 59s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 59s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 59s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 59s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 59s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 59s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 59s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 59s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 59s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 59s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 59s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 59s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 59s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 59s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 59s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 59s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 59s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 59s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 59s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 59s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 59s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 59s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 59s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 59s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 59s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 59s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 59s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 59s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 59s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 59s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 59s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 59s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 59s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 59s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 59s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 59s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 59s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 59s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 59s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 59s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 59s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 59s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 59s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 59s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 59s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 59s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 59s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 59s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 59s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 59s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 59s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 59s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 60s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 60s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 60s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 60s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 60s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 60s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 60s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 60s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 60s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 60s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 60s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 60s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 60s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 60s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 61s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 61s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 61s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 61s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 82s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 82s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 82s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 82s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 82s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 82s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 82s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 82s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 83s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 84s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 89s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 89s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 89s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 89s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 89s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 89s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 89s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 89s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 89s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 89s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 89s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 89s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 89s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 89s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 89s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 89s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 89s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 89s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 89s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 90s Preconfiguring packages ... 90s Fetched 829 MB in 32s (25.5 MB/s) 90s (Reading database ... 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100s Unpacking parted (3.6-5) over (3.6-4build1) ... 100s Preparing to unpack .../24-libparted2t64_3.6-5_amd64.deb ... 100s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 100s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 100s Unpacking libparted2t64:amd64 (3.6-5) over (3.6-4build1) ... 100s Preparing to unpack .../25-pci.ids_0.0~2025.03.09-1_all.deb ... 100s Unpacking pci.ids (0.0~2025.03.09-1) over (0.0~2025.02.12-1) ... 100s Preparing to unpack .../26-pciutils_1%3a3.13.0-2_amd64.deb ... 100s Unpacking pciutils (1:3.13.0-2) over (1:3.13.0-1) ... 100s Preparing to unpack .../27-libpci3_1%3a3.13.0-2_amd64.deb ... 100s Unpacking libpci3:amd64 (1:3.13.0-2) over (1:3.13.0-1) ... 100s Preparing to unpack .../28-strace_6.13+ds-1ubuntu1_amd64.deb ... 100s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 100s 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.../79-python3-rpds-py_0.21.0-2ubuntu2_amd64.deb ... 111s Unpacking python3-rpds-py (0.21.0-2ubuntu2) over (0.21.0-2ubuntu1) ... 111s Preparing to unpack .../80-python3-systemd_235-1build6_amd64.deb ... 111s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 111s Preparing to unpack .../81-python3.13-gdbm_3.13.2-2_amd64.deb ... 111s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 111s Preparing to unpack .../82-ubuntu-kernel-accessories_1.549_amd64.deb ... 111s Unpacking ubuntu-kernel-accessories (1.549) over (1.548) ... 111s Preparing to unpack .../83-cloud-init_25.1-0ubuntu3_all.deb ... 111s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 111s Preparing to unpack .../84-python3-bcrypt_4.2.0-2.1build1_amd64.deb ... 111s Unpacking python3-bcrypt (4.2.0-2.1build1) over (4.2.0-2.1) ... 111s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 111s Setting up media-types (13.0.0) ... 111s Installing new version of config file /etc/mime.types ... 111s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 111s Setting up ubuntu-kernel-accessories (1.549) ... 111s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 111s Setting up pci.ids (0.0~2025.03.09-1) ... 111s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 111s Setting up apt-utils (2.9.33) ... 111s Setting up libdebuginfod-common (0.192-4) ... 111s Setting up exfatprogs (1.2.8-1) ... 111s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 111s Setting up bpftool (7.6.0+6.14.0-10.10) ... 111s Setting up libestr0:amd64 (0.1.11-2) ... 111s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 111s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 111s Setting up dosfstools (4.2-1.2) ... 111s Setting up rsyslog (8.2412.0-2ubuntu2) ... 111s info: The user `syslog' is already a member of `adm'. 112s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 112s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 112s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 112s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 112s Setting up systemd (257.3-1ubuntu3) ... 112s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 112s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 112s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 113s Setting up libparted2t64:amd64 (3.6-5) ... 113s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 113s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 113s Setting up linux-headers-generic (6.14.0-10.10) ... 113s Setting up libjemalloc2:amd64 (5.3.0-3) ... 113s Setting up locales (2.41-1ubuntu1) ... 113s Installing new version of config file /etc/locale.alias ... 114s Generating locales (this might take a while)... 115s en_US.UTF-8... done 115s Generation complete. 115s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 115s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 115s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 115s Installing new version of config file /etc/apparmor.d/fusermount3 ... 115s Installing new version of config file /etc/apparmor.d/lsusb ... 115s Installing new version of config file /etc/apparmor.d/openvpn ... 116s Reloading AppArmor profiles 117s Setting up libftdi1-2:amd64 (1.5-8build1) ... 117s Setting up libglib2.0-data (2.84.0-1) ... 117s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 117s Setting up libncurses6:amd64 (6.5+20250216-2) ... 117s Setting up strace (6.13+ds-1ubuntu1) ... 118s Setting up xz-utils (5.6.4-1) ... 118s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 118s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 118s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 118s Setting up udev (257.3-1ubuntu3) ... 119s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 121s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 121s Setting up libpci3:amd64 (1:3.13.0-2) ... 121s Setting up whiptail (0.52.24-4ubuntu2) ... 121s Setting up python-apt-common (2.9.9build1) ... 121s Setting up pnp.ids (0.393-3) ... 121s Setting up libnl-3-200:amd64 (3.7.0-1) ... 121s Setting up python3.13-minimal (3.13.2-2) ... 121s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ... 121s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 121s Setting up libc-dev-bin (2.41-1ubuntu1) ... 121s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 121s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 121s Setting up rsync (3.4.1+ds1-3) ... 122s rsync.service is a disabled or a static unit not running, not starting it. 122s Setting up python3.13-gdbm (3.13.2-2) ... 122s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 122s Setting up systemd-resolved (257.3-1ubuntu3) ... 123s Setting up initramfs-tools-bin (0.146ubuntu1) ... 123s Setting up ncurses-term (6.5+20250216-2) ... 123s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 123s Setting up libpython3.13:amd64 (3.13.2-2) ... 123s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 123s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 123s Setting up systemd-sysv (257.3-1ubuntu3) ... 123s Setting up linux-headers-virtual (6.14.0-10.10) ... 123s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 123s Setting up python3.13 (3.13.2-2) ... 123s Setting up htop (3.4.0-2) ... 123s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 125s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 125s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 125s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 125s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 125s Setting up parted (3.6-5) ... 125s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ... 125s Setting up python3 (3.13.2-2) ... 126s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ... 126s Setting up python3-markupsafe (2.1.5-1build4) ... 126s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 128s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 128s Setting up hwdata (0.393-3) ... 128s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 128s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 128s No schema files found: doing nothing. 128s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 128s Setting up linux-perf (6.14.0-10.10) ... 128s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 128s Setting up pciutils (1:3.13.0-2) ... 128s Setting up python3-rpds-py (0.21.0-2ubuntu2) ... 128s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 128s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 128s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 128s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 128s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 128s Setting up curl (8.12.1-3ubuntu1) ... 128s Setting up linux-image-virtual (6.14.0-10.10) ... 128s Setting up initramfs-tools-core (0.146ubuntu1) ... 128s Setting up linux-tools-common (6.14.0-10.10) ... 128s Setting up python3-systemd (235-1build6) ... 128s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 128s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 128s Setting up linux-image-generic (6.14.0-10.10) ... 128s Setting up python3-dbus (1.3.2-5build5) ... 129s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 129s Setting up initramfs-tools (0.146ubuntu1) ... 129s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 129s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 129s update-initramfs: deferring update (trigger activated) 129s Setting up linux-generic (6.14.0-10.10) ... 129s Setting up ubuntu-minimal (1.549) ... 129s Setting up python3-apt (2.9.9build1) ... 129s Setting up python3-bcrypt (4.2.0-2.1build1) ... 129s Setting up python3-yaml (6.0.2-1build2) ... 129s Setting up libfwupd3:amd64 (2.0.6-4) ... 129s Setting up python3-lazr.uri (1.0.6-6) ... 129s Setting up binutils (2.44-3ubuntu1) ... 129s Setting up ubuntu-standard (1.549) ... 129s Setting up cloud-init-base (25.1-0ubuntu3) ... 130s Setting up linux-virtual (6.14.0-10.10) ... 130s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 130s Setting up python3-gi (3.50.0-4build1) ... 131s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 131s Setting up fwupd (2.0.6-4) ... 131s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 131s Setting up cloud-init (25.1-0ubuntu3) ... 131s Processing triggers for man-db (2.13.0-1) ... 133s Processing triggers for dbus (1.16.2-1ubuntu1) ... 133s Processing triggers for shared-mime-info (2.4-5) ... 133s Warning: program compiled against libxml 212 using older 209 133s Processing triggers for libc-bin (2.41-1ubuntu1) ... 133s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 133s /etc/kernel/postinst.d/initramfs-tools: 133s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 133s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 143s /etc/kernel/postinst.d/zz-update-grub: 143s Sourcing file `/etc/default/grub' 143s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 143s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 143s Generating grub configuration file ... 143s Found linux image: /boot/vmlinuz-6.14.0-10-generic 143s Found initrd image: /boot/initrd.img-6.14.0-10-generic 144s Found linux image: /boot/vmlinuz-6.12.0-16-generic 144s Found initrd image: /boot/initrd.img-6.12.0-16-generic 144s Found linux image: /boot/vmlinuz-6.11.0-8-generic 144s Found initrd image: /boot/initrd.img-6.11.0-8-generic 144s Warning: os-prober will not be executed to detect other bootable partitions. 144s Systems on them will not be added to the GRUB boot configuration. 144s Check GRUB_DISABLE_OS_PROBER documentation entry. 144s Adding boot menu entry for UEFI Firmware Settings ... 144s done 144s Processing triggers for initramfs-tools (0.146ubuntu1) ... 144s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 144s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 154s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 154s + /usr/lib/apt/apt-helper analyze-pattern ?true 154s + uname -r 154s + sed s/\./\\./g 154s + running_kernel_pattern=^linux-.*6\.12\.0-16-generic.* 154s + apt list ?obsolete 154s + tail -n+2 154s + cut -d/ -f1 154s + grep -v ^linux-.*6\.12\.0-16-generic.* 155s + obsolete_pkgs=linux-headers-6.11.0-8-generic 155s linux-headers-6.11.0-8 155s linux-headers-6.12.0-16 155s linux-image-6.11.0-8-generic 155s linux-modules-6.11.0-8-generic 155s linux-tools-6.11.0-8-generic 155s linux-tools-6.11.0-8 155s linux-tools-6.12.0-16 155s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremoveReading package lists... 155s Building dependency tree... linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-headers-6.12.0-16 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 linux-tools-6.12.0-16 155s 155s Reading state information... 155s Solving dependencies... 156s The following packages will be REMOVED: 156s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 156s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 156s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 156s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 156s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 156s linux-tools-6.12.0-16-generic* 156s 0 upgraded, 0 newly installed, 15 to remove and 5 not upgraded. 156s After this operation, 371 MB disk space will be freed. 156s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 156s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 156s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 156s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 156s Removing libpython3.12t64:amd64 (3.12.9-1) ... 156s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 156s Removing libnsl2:amd64 (1.3.0-3build3) ... 156s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 156s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 157s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 158s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 159s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 161s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 161s /etc/kernel/postrm.d/initramfs-tools: 161s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 161s /etc/kernel/postrm.d/zz-update-grub: 161s Sourcing file `/etc/default/grub' 161s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 161s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 161s Generating grub configuration file ... 161s Found linux image: /boot/vmlinuz-6.14.0-10-generic 161s Found initrd image: /boot/initrd.img-6.14.0-10-generic 161s Found linux image: /boot/vmlinuz-6.12.0-16-generic 161s Found initrd image: /boot/initrd.img-6.12.0-16-generic 161s Warning: os-prober will not be executed to detect other bootable partitions. 161s Systems on them will not be added to the GRUB boot configuration. 161s Check GRUB_DISABLE_OS_PROBER documentation entry. 161s Adding boot menu entry for UEFI Firmware Settings ... 161s done 161s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 162s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 162s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 162s Processing triggers for libc-bin (2.41-1ubuntu1) ... 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84830 files and directories currently installed.) 162s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 162s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 162s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 162s + grep -q trusty /etc/lsb-release 162s + [ ! -d /usr/share/doc/unattended-upgrades ] 162s + [ ! -d /usr/share/doc/lxd ] 162s + [ ! -d /usr/share/doc/lxd-client ] 162s + [ ! -d /usr/share/doc/snapd ] 162s + type iptables 162s + cat 162s + chmod 755 /etc/rc.local 162s + . /etc/rc.local 162s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 162s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 162s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 162s + uname -m 162s + [ x86_64 = ppc64le ] 162s + [ -d /run/systemd/system ] 162s + systemd-detect-virt --quiet --vm 162s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 162s + cat 162s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 162s + echo COMPRESS=lz4 162s autopkgtest [22:49:47]: upgrading testbed (apt dist-upgrade and autopurge) 162s Reading package lists... 162s Building dependency tree... 162s Reading state information... 163s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 163s Starting 2 pkgProblemResolver with broken count: 0 163s Done 163s Entering ResolveByKeep 163s 163s Calculating upgrade... 164s The following packages will be upgraded: 164s libc-bin libc-dev-bin libc6 libc6-dev locales 164s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 164s Need to get 10.5 MB of archives. 164s After this operation, 1024 B of additional disk space will be used. 164s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 164s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 164s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 164s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 164s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 165s Preconfiguring packages ... 165s Fetched 10.5 MB in 1s (10.4 MB/s) 165s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 165s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 165s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 165s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 165s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 165s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 165s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 165s Setting up libc6:amd64 (2.41-1ubuntu2) ... 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 166s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 166s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 166s Setting up libc-bin (2.41-1ubuntu2) ... 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 166s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 166s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 166s Setting up locales (2.41-1ubuntu2) ... 167s Generating locales (this might take a while)... 168s en_US.UTF-8... done 168s Generation complete. 168s Setting up libc-dev-bin (2.41-1ubuntu2) ... 168s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 168s Processing triggers for man-db (2.13.0-1) ... 169s Processing triggers for systemd (257.3-1ubuntu3) ... 170s Reading package lists... 170s Building dependency tree... 170s Reading state information... 170s Starting pkgProblemResolver with broken count: 0 170s Starting 2 pkgProblemResolver with broken count: 0 170s Done 170s Solving dependencies... 170s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 171s autopkgtest [22:49:56]: rebooting testbed after setup commands that affected boot 194s autopkgtest [22:50:19]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 197s autopkgtest [22:50:22]: @@@@@@@@@@@@@@@@@@@@ apt-source relion 199s Get:1 http://ftpmaster.internal/ubuntu plucky/universe relion 3.1.3-4build1 (dsc) [2136 B] 199s Get:2 http://ftpmaster.internal/ubuntu plucky/universe relion 3.1.3-4build1 (tar) [2345 kB] 199s Get:3 http://ftpmaster.internal/ubuntu plucky/universe relion 3.1.3-4build1 (diff) [12.1 kB] 199s gpgv: Signature made Sat Nov 30 07:03:33 2024 UTC 199s gpgv: using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37 199s gpgv: Can't check signature: No public key 199s dpkg-source: warning: cannot verify inline signature for ./relion_3.1.3-4build1.dsc: no acceptable signature found 200s autopkgtest [22:50:25]: testing package relion version 3.1.3-4build1 200s autopkgtest [22:50:25]: build not needed 201s autopkgtest [22:50:26]: test command1: preparing testbed 201s Reading package lists... 202s Building dependency tree... 202s Reading state information... 202s Starting pkgProblemResolver with broken count: 0 202s Starting 2 pkgProblemResolver with broken count: 0 202s Done 202s The following NEW packages will be installed: 202s libamd-comgr2 libamdhip64-5 libdeflate0 libevent-pthreads-2.1-7t64 202s libfabric1 libfftw3-double3 libfftw3-single3 libgomp1 libhsa-runtime64-1 202s libhsakmt1 libhwloc-plugins libhwloc15 libibmad5 libibumad3 libjbig0 202s libjpeg-turbo8 libjpeg8 liblerc4 libllvm17t64 libmunge2 libopenmpi40 202s libpciaccess0 libpmix2t64 libpsm-infinipath1 libpsm2-2 librdmacm1t64 202s libsharpyuv0 libtiff6 libucx0 libwebp7 libxnvctrl0 mpi-default-bin 202s ocl-icd-libopencl1 openmpi-bin openmpi-common relion 203s 0 upgraded, 36 newly installed, 0 to remove and 0 not upgraded. 203s Need to get 75.1 MB of archives. 203s After this operation, 330 MB of additional disk space will be used. 203s Get:1 http://ftpmaster.internal/ubuntu plucky/universe amd64 libllvm17t64 amd64 1:17.0.6-21 [26.0 MB] 206s Get:2 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 208s Get:3 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB] 208s Get:4 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB] 208s Get:5 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamdhip64-5 amd64 5.7.1-5 [9643 kB] 209s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 209s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B] 209s Get:8 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3build1 [178 kB] 209s Get:9 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 209s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 librdmacm1t64 amd64 55.0-1ubuntu1 [71.5 kB] 209s Get:11 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfabric1 amd64 1.17.0-3.1 [789 kB] 209s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 209s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libfftw3-double3 amd64 3.3.10-2fakesync1build1 [839 kB] 209s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libfftw3-single3 amd64 3.3.10-2fakesync1build1 [871 kB] 209s Get:15 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc15 amd64 2.12.0-1 [194 kB] 209s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 209s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 209s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 209s Get:19 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmunge2 amd64 0.5.16-1 [16.5 kB] 209s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 209s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 209s Get:22 http://ftpmaster.internal/ubuntu plucky/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB] 209s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc-plugins amd64 2.12.0-1 [16.0 kB] 209s Get:24 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpmix2t64 amd64 5.0.6-5 [714 kB] 209s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libibumad3 amd64 55.0-1ubuntu1 [29.7 kB] 209s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libibmad5 amd64 55.0-1ubuntu1 [42.7 kB] 209s Get:27 http://ftpmaster.internal/ubuntu plucky/universe amd64 libucx0 amd64 1.18.1+ds-2 [1293 kB] 209s Get:28 http://ftpmaster.internal/ubuntu plucky/universe amd64 libopenmpi40 amd64 5.0.7-1 [2526 kB] 210s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 210s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 210s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 210s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 210s Get:33 http://ftpmaster.internal/ubuntu plucky/universe amd64 openmpi-common all 5.0.7-1 [97.9 kB] 210s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 openmpi-bin amd64 5.0.7-1 [192 kB] 210s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 mpi-default-bin amd64 1.18 [2510 B] 210s Get:36 http://ftpmaster.internal/ubuntu plucky/universe amd64 relion amd64 3.1.3-4build1 [15.0 MB] 211s Fetched 75.1 MB in 8s (8939 kB/s) 211s Selecting previously unselected package libllvm17t64:amd64. 211s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 211s Preparing to unpack .../00-libllvm17t64_1%3a17.0.6-21_amd64.deb ... 211s Unpacking libllvm17t64:amd64 (1:17.0.6-21) ... 212s Selecting previously unselected package libamd-comgr2:amd64. 212s Preparing to unpack .../01-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_amd64.deb ... 212s Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 212s Selecting previously unselected package libhsakmt1:amd64. 212s Preparing to unpack .../02-libhsakmt1_5.7.0-1build1_amd64.deb ... 212s Unpacking libhsakmt1:amd64 (5.7.0-1build1) ... 212s Selecting previously unselected package libhsa-runtime64-1. 212s Preparing to unpack .../03-libhsa-runtime64-1_5.7.1-2build1_amd64.deb ... 212s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 212s Selecting previously unselected package libamdhip64-5. 212s Preparing to unpack .../04-libamdhip64-5_5.7.1-5_amd64.deb ... 212s Unpacking libamdhip64-5 (5.7.1-5) ... 212s Selecting previously unselected package libdeflate0:amd64. 212s Preparing to unpack .../05-libdeflate0_1.23-1_amd64.deb ... 212s Unpacking libdeflate0:amd64 (1.23-1) ... 212s Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. 212s Preparing to unpack .../06-libevent-pthreads-2.1-7t64_2.1.12-stable-10_amd64.deb ... 212s Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 212s Selecting previously unselected package libpsm-infinipath1. 212s Preparing to unpack .../07-libpsm-infinipath1_3.3+20.604758e7-6.3build1_amd64.deb ... 212s Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 212s Selecting previously unselected package libpsm2-2. 212s Preparing to unpack .../08-libpsm2-2_11.2.185-2.1_amd64.deb ... 212s Unpacking libpsm2-2 (11.2.185-2.1) ... 212s Selecting previously unselected package librdmacm1t64:amd64. 212s Preparing to unpack .../09-librdmacm1t64_55.0-1ubuntu1_amd64.deb ... 212s Unpacking librdmacm1t64:amd64 (55.0-1ubuntu1) ... 212s Selecting previously unselected package libfabric1:amd64. 212s Preparing to unpack .../10-libfabric1_1.17.0-3.1_amd64.deb ... 212s Unpacking libfabric1:amd64 (1.17.0-3.1) ... 212s Selecting previously unselected package libgomp1:amd64. 212s Preparing to unpack .../11-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 212s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 212s Selecting previously unselected package libfftw3-double3:amd64. 212s Preparing to unpack .../12-libfftw3-double3_3.3.10-2fakesync1build1_amd64.deb ... 212s Unpacking libfftw3-double3:amd64 (3.3.10-2fakesync1build1) ... 212s Selecting previously unselected package libfftw3-single3:amd64. 213s Preparing to unpack .../13-libfftw3-single3_3.3.10-2fakesync1build1_amd64.deb ... 213s Unpacking libfftw3-single3:amd64 (3.3.10-2fakesync1build1) ... 213s Selecting previously unselected package libhwloc15:amd64. 213s Preparing to unpack .../14-libhwloc15_2.12.0-1_amd64.deb ... 213s Unpacking libhwloc15:amd64 (2.12.0-1) ... 213s Selecting previously unselected package libjpeg-turbo8:amd64. 213s Preparing to unpack .../15-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 213s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 213s Selecting previously unselected package libjpeg8:amd64. 213s Preparing to unpack .../16-libjpeg8_8c-2ubuntu11_amd64.deb ... 213s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 213s Selecting previously unselected package liblerc4:amd64. 213s Preparing to unpack .../17-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 213s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 213s Selecting previously unselected package libmunge2:amd64. 213s Preparing to unpack .../18-libmunge2_0.5.16-1_amd64.deb ... 213s Unpacking libmunge2:amd64 (0.5.16-1) ... 213s Selecting previously unselected package libpciaccess0:amd64. 213s Preparing to unpack .../19-libpciaccess0_0.17-3build1_amd64.deb ... 213s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 213s Selecting previously unselected package libxnvctrl0:amd64. 213s Preparing to unpack .../20-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ... 213s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 213s Selecting previously unselected package ocl-icd-libopencl1:amd64. 213s Preparing to unpack .../21-ocl-icd-libopencl1_2.3.2-1build1_amd64.deb ... 213s Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 213s Selecting previously unselected package libhwloc-plugins:amd64. 213s Preparing to unpack .../22-libhwloc-plugins_2.12.0-1_amd64.deb ... 213s Unpacking libhwloc-plugins:amd64 (2.12.0-1) ... 213s Selecting previously unselected package libpmix2t64:amd64. 213s Preparing to unpack .../23-libpmix2t64_5.0.6-5_amd64.deb ... 213s Unpacking libpmix2t64:amd64 (5.0.6-5) ... 213s Selecting previously unselected package libibumad3:amd64. 213s Preparing to unpack .../24-libibumad3_55.0-1ubuntu1_amd64.deb ... 213s Unpacking libibumad3:amd64 (55.0-1ubuntu1) ... 213s Selecting previously unselected package libibmad5:amd64. 213s Preparing to unpack .../25-libibmad5_55.0-1ubuntu1_amd64.deb ... 213s Unpacking libibmad5:amd64 (55.0-1ubuntu1) ... 213s Selecting previously unselected package libucx0:amd64. 213s Preparing to unpack .../26-libucx0_1.18.1+ds-2_amd64.deb ... 213s Unpacking libucx0:amd64 (1.18.1+ds-2) ... 213s Selecting previously unselected package libopenmpi40:amd64. 213s Preparing to unpack .../27-libopenmpi40_5.0.7-1_amd64.deb ... 213s Unpacking libopenmpi40:amd64 (5.0.7-1) ... 213s Selecting previously unselected package libsharpyuv0:amd64. 213s Preparing to unpack .../28-libsharpyuv0_1.5.0-0.1_amd64.deb ... 213s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 213s Selecting previously unselected package libjbig0:amd64. 213s Preparing to unpack .../29-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 213s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 213s Selecting previously unselected package libwebp7:amd64. 213s Preparing to unpack .../30-libwebp7_1.5.0-0.1_amd64.deb ... 213s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 213s Selecting previously unselected package libtiff6:amd64. 213s Preparing to unpack .../31-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 213s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 213s Selecting previously unselected package openmpi-common. 213s Preparing to unpack .../32-openmpi-common_5.0.7-1_all.deb ... 213s Unpacking openmpi-common (5.0.7-1) ... 213s Selecting previously unselected package openmpi-bin. 213s Preparing to unpack .../33-openmpi-bin_5.0.7-1_amd64.deb ... 213s Unpacking openmpi-bin (5.0.7-1) ... 213s Selecting previously unselected package mpi-default-bin. 213s Preparing to unpack .../34-mpi-default-bin_1.18_amd64.deb ... 213s Unpacking mpi-default-bin (1.18) ... 213s Selecting previously unselected package relion. 213s Preparing to unpack .../35-relion_3.1.3-4build1_amd64.deb ... 213s Unpacking relion (3.1.3-4build1) ... 214s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 214s Setting up libpciaccess0:amd64 (0.17-3build1) ... 214s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 214s Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 214s Setting up libibumad3:amd64 (55.0-1ubuntu1) ... 214s Setting up libdeflate0:amd64 (1.23-1) ... 214s Setting up libibmad5:amd64 (55.0-1ubuntu1) ... 214s Setting up libgomp1:amd64 (15-20250222-0ubuntu1) ... 214s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 214s Setting up libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 214s Setting up libmunge2:amd64 (0.5.16-1) ... 214s Setting up libllvm17t64:amd64 (1:17.0.6-21) ... 214s Setting up libhwloc15:amd64 (2.12.0-1) ... 214s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 214s Setting up libfftw3-double3:amd64 (3.3.10-2fakesync1build1) ... 214s Setting up libwebp7:amd64 (1.5.0-0.1) ... 214s Setting up ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 214s Setting up libpsm2-2 (11.2.185-2.1) ... 214s Setting up openmpi-common (5.0.7-1) ... 214s Setting up librdmacm1t64:amd64 (55.0-1ubuntu1) ... 214s Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 214s Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 214s update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode 214s Setting up libhsakmt1:amd64 (5.7.0-1build1) ... 214s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 214s Setting up libfabric1:amd64 (1.17.0-3.1) ... 214s Setting up libfftw3-single3:amd64 (3.3.10-2fakesync1build1) ... 214s Setting up libhwloc-plugins:amd64 (2.12.0-1) ... 214s Setting up libpmix2t64:amd64 (5.0.6-5) ... 214s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 214s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 214s Setting up libamdhip64-5 (5.7.1-5) ... 214s Setting up libucx0:amd64 (1.18.1+ds-2) ... 214s Setting up libopenmpi40:amd64 (5.0.7-1) ... 214s Setting up openmpi-bin (5.0.7-1) ... 214s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 214s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 214s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 214s Setting up mpi-default-bin (1.18) ... 214s Setting up relion (3.1.3-4build1) ... 214s Processing triggers for libc-bin (2.41-1ubuntu2) ... 214s Processing triggers for man-db (2.13.0-1) ... 215s autopkgtest [22:50:40]: test command1: /usr/bin/relion_refine 215s autopkgtest [22:50:40]: test command1: [----------------------- 216s +++ RELION: command line arguments (with defaults for optional ones between parentheses) +++ 216s ====== General options ===== 216s --i () : Input images (in a star-file) 216s --o () : Output rootname 216s --iter (50) : Maximum number of iterations to perform 216s --tau2_fudge (1) : Regularisation parameter (values higher than 1 give more weight to the data) 216s --K (1) : Number of references to be refined 216s --particle_diameter (-1) : Diameter of the circular mask that will be applied to the experimental images (in Angstroms) 216s --zero_mask (false) : Mask surrounding background in particles to zero (by default the solvent area is filled with random noise) 216s --flatten_solvent (false) : Perform masking on the references as well? 216s --solvent_mask (None) : User-provided mask for the references (default is to use spherical mask with particle_diameter) 216s --solvent_mask2 (None) : User-provided secondary mask (with its own average density) 216s --lowpass_mask (None) : User-provided mask for low-pass filtering 216s --lowpass (0) : User-provided cutoff for region specified above 216s --tau (None) : STAR file with input tau2-spectrum (to be kept constant) 216s --local_symmetry (None) : Local symmetry description file containing list of masks and their operators 216s --split_random_halves (false) : Refine two random halves of the data completely separately 216s --low_resol_join_halves (-1) : Resolution (in Angstrom) up to which the two random half-reconstructions will not be independent to prevent diverging orientations 216s ====== Initialisation ===== 216s --ref (None) : Image, stack or star-file with the reference(s). (Compulsory for 3D refinement!) 216s --denovo_3dref (false) : Make an initial 3D model from randomly oriented 2D particles 216s --offset (10) : Initial estimated stddev for the origin offsets (in Angstroms) 216s --firstiter_cc (false) : Perform CC-calculation in the first iteration (use this if references are not on the absolute intensity scale) 216s --ini_high (-1) : Resolution (in Angstroms) to which to limit refinement in the first iteration 216s ====== Orientations ===== 216s --oversampling (1) : Adaptive oversampling order to speed-up calculations (0=no oversampling, 1=2x, 2=4x, etc) 216s --healpix_order (2) : Healpix order for the angular sampling (before oversampling) on the (3D) sphere: hp2=15deg, hp3=7.5deg, etc 216s --psi_step (-1) : Sampling rate (before oversampling) for the in-plane angle (default=10deg for 2D, hp sampling for 3D) 216s --limit_tilt (-91) : Limited tilt angle: positive for keeping side views, negative for keeping top views 216s --sym (c1) : Symmetry group 216s --relax_sym () : Symmetry to be relaxed 216s --offset_range (6) : Search range for origin offsets (in pixels) 216s --offset_step (2) : Sampling rate (before oversampling) for origin offsets (in pixels) 216s --helical_offset_step (-1) : Sampling rate (before oversampling) for offsets along helical axis (in Angstroms) 216s --perturb (0.5) : Perturbation factor for the angular sampling (0=no perturb; 0.5=perturb) 216s --auto_refine (false) : Perform 3D auto-refine procedure? 216s --auto_local_healpix_order (4) : Minimum healpix order (before oversampling) from which autosampling procedure will use local searches 216s --sigma_ang (-1) : Stddev on all three Euler angles for local angular searches (of +/- 3 stddev) 216s --sigma_rot (-1) : Stddev on the first Euler angle for local angular searches (of +/- 3 stddev) 216s --sigma_tilt (-1) : Stddev on the second Euler angle for local angular searches (of +/- 3 stddev) 216s --sigma_psi (-1) : Stddev on the in-plane angle for local angular searches (of +/- 3 stddev) 216s --skip_align (false) : Skip orientational assignment (only classify)? 216s --skip_rotate (false) : Skip rotational assignment (only translate and classify)? 216s --bimodal_psi (false) : Do bimodal searches of psi angle? 216s ====== Helical reconstruction (in development...) ===== 216s --helix (false) : Perform 3D classification or refinement for helices? 216s --ignore_helical_symmetry (false) : Ignore helical symmetry? 216s --helical_nr_asu (1) : Number of new helical asymmetric units (asu) per box (1 means no helical symmetry is present) 216s --helical_twist_initial (0.) : Helical twist (in degrees, positive values for right-handedness) 216s --helical_twist_min (0.) : Minimum helical twist (in degrees, positive values for right-handedness) 216s --helical_twist_max (0.) : Maximum helical twist (in degrees, positive values for right-handedness) 216s --helical_twist_inistep (0.) : Initial step of helical twist search (in degrees) 216s --helical_rise_initial (0.) : Helical rise (in Angstroms) 216s --helical_rise_min (0.) : Minimum helical rise (in Angstroms) 216s --helical_rise_max (0.) : Maximum helical rise (in Angstroms) 216s --helical_rise_inistep (0.) : Initial step of helical rise search (in Angstroms) 216s --helical_nstart (1) : N-number for the N-start helix (only useful for rotational priors) 216s --helical_z_percentage (0.3) : This box length along the center of Z axis contains good information of the helix. Important in imposing and refining symmetry 216s --helical_inner_diameter (-1.) : Inner diameter of helical tubes in Angstroms (for masks of helical references and particles) 216s --helical_outer_diameter (-1.) : Outer diameter of helical tubes in Angstroms (for masks of helical references and particles) 216s --helical_symmetry_search (false) : Perform local refinement of helical symmetry? 216s --helical_sigma_distance (-1.) : Sigma of distance along the helical tracks 216s --helical_keep_tilt_prior_fixed (false) : Keep helical tilt priors fixed (at 90 degrees) in global angular searches? 216s --helical_exclude_resols () : Resolutions (in A) along helical axis to exclude from refinement (comma-separated pairs, e.g. 50-5) 216s --fourier_mask (None) : Originally-sized, FFTW-centred image with Fourier mask for Projector 216s ====== Corrections ===== 216s --ctf (false) : Perform CTF correction? 216s --pad_ctf (false) : Perform CTF padding to treat CTF aliaising better? 216s --ctf_intact_first_peak (false) : Ignore CTFs until their first peak? 216s --ctf_corrected_ref (false) : Have the input references been CTF-amplitude corrected? 216s --ctf_phase_flipped (false) : Have the data been CTF phase-flipped? 216s --only_flip_phases (false) : Only perform CTF phase-flipping? (default is full amplitude-correction) 216s --norm (false) : Perform normalisation-error correction? 216s --scale (false) : Perform intensity-scale corrections on image groups? 216s --no_norm (false) : Switch off normalisation-error correction? 216s --no_scale (false) : Switch off intensity-scale corrections on image groups? 216s ====== Stochastic Gradient Descent ===== 216s --sgd (false) : Perform stochastic gradient descent instead of default expectation-maximization 216s --stochastic_em (false) : Perform stochastic EM instead of SGD to avoid patent problems for initial model generation by commercial users 216s --sgd_ini_iter (50) : Number of initial SGD iterations 216s --sgd_fin_iter (50) : Number of final SGD iterations 216s --sgd_inbetween_iter (200) : Number of SGD iterations between the initial and final ones 216s --sgd_ini_resol (35) : Resolution cutoff during the initial SGD iterations (A) 216s --sgd_fin_resol (15) : Resolution cutoff during the final SGD iterations (A) 216s --sgd_ini_subset (100) : Mini-batch size during the initial SGD iterations 216s --sgd_fin_subset (500) : Mini-batch size during the final SGD iterations 216s --mu (0.9) : Momentum parameter for SGD updates 216s --sgd_stepsize (0.5) : Step size parameter for SGD updates 216s --sgd_sigma2fudge_initial (8) : Initial factor by which the noise variance will be multiplied for SGD (not used if halftime is negative) 216s --sgd_sigma2fudge_halflife (-1) : Initialise SGD with 8x higher noise-variance, and reduce with this half-life in # of particles (default is keep normal variance) 216s --sgd_skip_anneal (false) : By default, multiple references are annealed during the in_between iterations. Use this option to switch annealing off 216s --sgd_write_iter (1) : Write out model every so many iterations in SGD (default is writing out all iters) 216s ====== Computation ===== 216s --pool (1) : Number of images to pool for each thread task 216s --j (1) : Number of threads to run in parallel (only useful on multi-core machines) 216s --dont_combine_weights_via_disc (false) : Send the large arrays of summed weights through the MPI network, instead of writing large files to disc 216s --onthefly_shifts (false) : Calculate shifted images on-the-fly, do not store precalculated ones in memory 216s --no_parallel_disc_io (false) : Do NOT let parallel (MPI) processes access the disc simultaneously (use this option with NFS) 216s --preread_images (false) : Use this to let the leader process read all particles into memory. Be careful you have enough RAM for large data sets! 216s --scratch_dir () : If provided, particle stacks will be copied to this local scratch disk prior to refinement. 216s --keep_free_scratch (10) : Space available for copying particle stacks (in Gb) 216s --reuse_scratch (false) : Re-use data on scratchdir, instead of wiping it and re-copying all data. 216s --keep_scratch (false) : Don't remove scratch after convergence. Following jobs that use EXACTLY the same particles should use --reuse_scratch. 216s --fast_subsets (false) : Use faster optimisation by using subsets of the data in the first 15 iterations 216s --gpu (false) : Use available gpu resources for some calculations 216s --free_gpu_memory (0) : GPU device memory (in Mb) to leave free after allocation. 216s ====== Expert options ===== 216s --pad (2) : Oversampling factor for the Fourier transforms of the references 216s --ref_angpix (-1.) : Pixel size (in A) for the input reference (default is to read from header) 216s --NN (false) : Perform nearest-neighbour instead of linear Fourier-space interpolation? 216s --r_min_nn (10) : Minimum number of Fourier shells to perform linear Fourier-space interpolation 216s --verb (1) : Verbosity (1=normal, 0=silent) 216s --random_seed (-1) : Number for the random seed generator 216s --coarse_size (-1) : Maximum image size for the first pass of the adaptive sampling approach 216s --adaptive_fraction (0.999) : Fraction of the weights to be considered in the first pass of adaptive oversampling 216s --maskedge (5) : Width of the soft edge of the spherical mask (in pixels) 216s --fix_sigma_noise (false) : Fix the experimental noise spectra? 216s --fix_sigma_offset (false) : Fix the stddev in the origin offsets? 216s --incr_size (10) : Number of Fourier shells beyond the current resolution to be included in refinement 216s --print_metadata_labels (false) : Print a table with definitions of all metadata labels, and exit 216s --print_symmetry_ops (false) : Print all symmetry transformation matrices, and exit 216s --strict_highres_exp (-1) : High resolution limit (in Angstrom) to restrict probability calculations in the expectation step 216s --strict_lowres_exp (-1) : Low resolution limit (in Angstrom) to restrict probability calculations in the expectation step 216s --dont_check_norm (false) : Skip the check whether the images are normalised correctly 216s --always_cc (false) : Perform CC-calculation in all iterations (useful for faster denovo model generation?) 216s --solvent_correct_fsc (false) : Correct FSC curve for the effects of the solvent mask? 216s --skip_maximize (false) : Skip maximization step (only write out data.star file)? 216s --failsafe_threshold (40) : Maximum number of particles permitted to be handled by fail-safe mode, due to zero sum of weights, before exiting with an error (GPU only). 216s --external_reconstruct (false) : Perform the reconstruction step outside relion_refine, e.g. for learned priors?) 216s --auto_iter_max (999) : In auto-refinement, stop at this iteration. 216s --auto_ignore_angles (false) : In auto-refinement, update angular sampling regardless of changes in orientations for convergence. This makes convergence faster. 216s --auto_resol_angles (false) : In auto-refinement, update angular sampling based on resolution-based required sampling. This makes convergence faster. 216s --allow_coarser_sampling (false) : In 2D/3D classification, allow coarser angular and translational samplings if accuracies are bad (typically in earlier iterations. 216s --trust_ref_size (false) : Trust the pixel and box size of the input reference; by default the program will die if these are different from the first optics group of the data 216s --maxsig (-1) : Maximum number of poses & translations to consider 216s --skip_gridding (false) : Skip gridding in the M step 216s --version : Print RELION version and exit 216s autopkgtest [22:50:41]: test command1: -----------------------] 216s command1 PASS (superficial) 216s autopkgtest [22:50:41]: test command1: - - - - - - - - - - results - - - - - - - - - - 217s autopkgtest [22:50:42]: @@@@@@@@@@@@@@@@@@@@ summary 217s command1 PASS (superficial) 235s nova [W] Skipping flock for amd64 235s Creating nova instance adt-plucky-amd64-relion-20250315-224705-juju-7f2275-prod-proposed-migration-environment-15-591f9918-823e-4f86-a922-12d919d5018c from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)... 235s nova [W] Timed out waiting for 6a3b137a-1968-4bc5-83f9-760813fcfb02 to get deleted.