0s autopkgtest [08:42:25]: starting date and time: 2024-11-13 08:42:25+0000
  0s autopkgtest [08:42:25]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [08:42:25]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.zrtiynql/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade recan --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@lcy02-35.secgroup --name adt-plucky-amd64-recan-20241113-084225-juju-7f2275-prod-proposed-migration-environment-20-e8137761-38cb-49df-9186-b016e6d9c67b --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 69s autopkgtest [08:43:34]: testbed dpkg architecture: amd64
 69s autopkgtest [08:43:34]: testbed apt version: 2.9.8
 69s autopkgtest [08:43:34]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 69s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
 69s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB]
 69s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
 69s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB]
 69s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB]
 69s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [111 kB]
 69s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [65.2 kB]
 69s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB]
 69s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [637 kB]
 69s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [255 kB]
 69s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [37.7 kB]
 69s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [13.0 kB]
 70s Fetched 2173 kB in 0s (5767 kB/s)
 70s Reading package lists...
 71s Reading package lists...
 71s Building dependency tree...
 71s Reading state information...
 71s Calculating upgrade...
 72s The following NEW packages will be installed:
 72s   python3.13-gdbm
 72s The following packages will be upgraded:
 72s   libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal
 72s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
 72s Need to get 253 kB of archives.
 72s After this operation, 147 kB of additional disk space will be used.
 72s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB]
 72s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB]
 72s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB]
 72s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB]
 72s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B]
 72s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.23.2-5ubuntu4 [152 kB]
 72s Fetched 253 kB in 0s (7355 kB/s)
 72s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75541 files and directories currently installed.)
 72s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ...
 72s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
 72s Setting up python3-minimal (3.12.7-1) ...
 73s (Reading database ... 
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(Reading database ... 55%
(Reading database ... 60%
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75541 files and directories currently installed.)
 73s Preparing to unpack .../python3_3.12.7-1_amd64.deb ...
 73s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
 73s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ...
 73s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ...
 73s Selecting previously unselected package python3.13-gdbm.
 73s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ...
 73s Unpacking python3.13-gdbm (3.13.0-2) ...
 73s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ...
 73s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ...
 73s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_amd64.deb ...
 73s Unpacking libgpgme11t64:amd64 (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ...
 73s Setting up libgpgme11t64:amd64 (1.23.2-5ubuntu4) ...
 73s Setting up python3.13-gdbm (3.13.0-2) ...
 73s Setting up libpython3-stdlib:amd64 (3.12.7-1) ...
 73s Setting up python3 (3.12.7-1) ...
 73s Setting up python3-gdbm:amd64 (3.12.7-1) ...
 73s Processing triggers for man-db (2.12.1-3) ...
 74s Processing triggers for libc-bin (2.40-1ubuntu3) ...
 74s Reading package lists...
 74s Building dependency tree...
 74s Reading state information...
 75s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 75s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
 75s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
 75s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 75s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
 76s Reading package lists...
 76s Reading package lists...
 77s Building dependency tree...
 77s Reading state information...
 77s Calculating upgrade...
 77s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 77s Reading package lists...
 78s Building dependency tree...
 78s Reading state information...
 78s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 79s autopkgtest [08:43:44]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024
 79s autopkgtest [08:43:44]: @@@@@@@@@@@@@@@@@@@@ apt-source recan
 80s Get:1 http://ftpmaster.internal/ubuntu plucky/universe recan 0.5+dfsg-1 (dsc) [2252 B]
 80s Get:2 http://ftpmaster.internal/ubuntu plucky/universe recan 0.5+dfsg-1 (tar) [685 kB]
 80s Get:3 http://ftpmaster.internal/ubuntu plucky/universe recan 0.5+dfsg-1 (diff) [4880 B]
 80s gpgv: Signature made Sun Jun 25 20:50:17 2023 UTC
 80s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
 80s gpgv:                issuer "emollier@debian.org"
 80s gpgv: Can't check signature: No public key
 80s dpkg-source: warning: cannot verify inline signature for ./recan_0.5+dfsg-1.dsc: no acceptable signature found
 80s autopkgtest [08:43:45]: testing package recan version 0.5+dfsg-1
 80s autopkgtest [08:43:45]: build not needed
 80s autopkgtest [08:43:45]: test run-unit-test: preparing testbed
 84s Reading package lists...
 84s Building dependency tree...
 84s Reading state information...
 85s Starting pkgProblemResolver with broken count: 0
 85s Starting 2 pkgProblemResolver with broken count: 0
 85s Done
 85s The following additional packages will be installed:
 85s   blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx
 85s   fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1
 85s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0
 85s   libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0
 85s   liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libpython3.13-minimal
 85s   libpython3.13-stdlib libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6
 85s   libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0
 85s   libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data python3-all
 85s   python3-appdirs python3-biopython python3-brotli python3-cairo
 85s   python3-contourpy python3-cycler python3-dateutil python3-decorator
 85s   python3-fastjsonschema python3-fonttools python3-freetype python3-fs
 85s   python3-iniconfig python3-jupyter-core python3-kiwisolver python3-lxml
 85s   python3-lz4 python3-matplotlib python3-mpmath python3-nbformat python3-numpy
 85s   python3-packaging python3-pandas python3-pandas-lib python3-pil
 85s   python3-pil.imagetk python3-platformdirs python3-plotly python3-pluggy
 85s   python3-pytest python3-reportlab python3-rlpycairo python3-scipy python3-six
 85s   python3-sympy python3-tenacity python3-tk python3-traitlets python3-tz
 85s   python3-ufolib2 python3.12-tk python3.13 python3.13-minimal python3.13-tk
 85s   recan sgml-base tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common
 85s   xfonts-encodings xfonts-utils xml-core
 85s Suggested packages:
 85s   blt-demo fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre
 85s   libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 bwa clustalo clustalw
 85s   dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons
 85s   python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml samtools
 85s   t-coffee wise python-cycler-doc python-fastjsonschema-doc python3-pip
 85s   python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript
 85s   gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc
 85s   python3-cairocffi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip
 85s   python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc
 85s   python3-gmpy2 gcc gfortran python-numpy-doc python3-dev python-pandas-doc
 85s   python3-statsmodels python-pil-doc python3-ipykernel pdf-viewer
 85s   python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm
 85s   python-scipy-doc texlive-fonts-extra python-sympy-doc python-tenacity-doc
 85s   tix python3-tk-dbg python-traitlets-doc python3.13-venv python3.13-doc
 85s   binfmt-support sgml-base-doc debhelper
 85s Recommended packages:
 85s   javascript-common python-biopython-doc ncbi-blast+ python3-bs4
 85s   python3-cssselect python3-html5lib python3-bottleneck python3-numexpr
 85s   python3-odf python3-openpyxl python3-tables python3-numba python3-olefile
 85s   fonts-dejavu-extra g++ | c++-compiler isympy-common
 85s The following NEW packages will be installed:
 85s   autopkgtest-satdep blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono
 85s   fonts-lyx fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1
 85s   libfontenc1 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
 85s   libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui
 85s   liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0
 85s   libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0
 85s   libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3
 85s   libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1 libxss1
 85s   python-matplotlib-data python3-all python3-appdirs python3-biopython
 85s   python3-brotli python3-cairo python3-contourpy python3-cycler
 85s   python3-dateutil python3-decorator python3-fastjsonschema python3-fonttools
 85s   python3-freetype python3-fs python3-iniconfig python3-jupyter-core
 85s   python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib
 85s   python3-mpmath python3-nbformat python3-numpy python3-packaging
 85s   python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk
 85s   python3-platformdirs python3-plotly python3-pluggy python3-pytest
 85s   python3-reportlab python3-rlpycairo python3-scipy python3-six python3-sympy
 85s   python3-tenacity python3-tk python3-traitlets python3-tz python3-ufolib2
 85s   python3.12-tk python3.13 python3.13-minimal python3.13-tk recan sgml-base
 85s   tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xfonts-encodings
 85s   xfonts-utils xml-core
 86s 0 upgraded, 100 newly installed, 0 to remove and 0 not upgraded.
 86s Need to get 92.7 MB/92.7 MB of archives.
 86s After this operation, 410 MB of additional disk space will be used.
 86s Get:1 /tmp/autopkgtest.gjQ2qO/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [724 B]
 86s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB]
 86s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB]
 86s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 sgml-base all 1.31 [11.4 kB]
 86s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1085 kB]
 86s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
 86s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
 86s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontenc1 amd64 1:1.1.8-1build1 [14.0 kB]
 86s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
 86s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB]
 86s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 xfonts-utils amd64 1:7.7+7 [97.1 kB]
 86s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-urw-base35 all 20200910-8 [11.0 MB]
 86s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB]
 86s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB]
 86s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB]
 86s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB]
 86s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B]
 86s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.15-1 [862 kB]
 86s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB]
 86s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B]
 86s Get:21 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lyx all 2.4.2.1-1 [171 kB]
 86s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB]
 86s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB]
 86s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB]
 86s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B]
 86s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB]
 86s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.22-1 [64.5 kB]
 86s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB]
 86s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB]
 86s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB]
 86s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.0.1-1 [540 kB]
 86s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB]
 86s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu2 [150 kB]
 86s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
 86s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
 86s Get:36 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
 86s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB]
 86s Get:38 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB]
 86s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB]
 86s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu2 [179 kB]
 86s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB]
 86s Get:42 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB]
 86s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB]
 86s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB]
 86s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB]
 86s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.4.0-0.1 [231 kB]
 86s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB]
 86s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB]
 86s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB]
 86s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu1 [169 kB]
 86s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-matplotlib-data all 3.8.3-3 [2928 kB]
 86s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB]
 86s Get:53 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B]
 86s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB]
 86s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB]
 86s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-tk amd64 3.12.7-3 [116 kB]
 86s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-tk amd64 3.13.0-2 [106 kB]
 86s Get:58 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-tk amd64 3.12.7-1 [9752 B]
 86s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pil.imagetk amd64 10.4.0-1ubuntu1 [9394 B]
 86s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu1 [184 kB]
 86s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 10.4.0-1ubuntu1 [463 kB]
 86s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cairo amd64 1.26.1-2 [119 kB]
 86s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-freetype all 2.5.1-1 [92.3 kB]
 86s Get:64 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-rlpycairo all 0.3.0-3 [9130 B]
 86s Get:65 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-reportlab all 4.2.5-1 [1107 kB]
 86s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 xml-core all 0.19 [20.3 kB]
 86s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 w3c-sgml-lib all 1.3-3 [280 kB]
 86s Get:68 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-biopython amd64 1.84+dfsg-4 [1714 kB]
 86s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-brotli amd64 1.1.0-2build2 [332 kB]
 86s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-contourpy amd64 1.3.0-2 [217 kB]
 86s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cycler all 0.12.1-1 [9716 B]
 86s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.16.0-7 [13.1 kB]
 86s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB]
 86s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB]
 86s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fastjsonschema all 2.20.0-1 [20.1 kB]
 86s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.13.1-5 [18.2 MB]
 86s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB]
 86s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpmath all 1.3.0-1 [425 kB]
 86s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sympy all 1.13.3-1 [4228 kB]
 86s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2024.1-2 [31.4 kB]
 86s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fs all 2.4.16-4 [91.3 kB]
 86s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lxml amd64 5.3.0-1 [1282 kB]
 86s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build4 [26.2 kB]
 86s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicode-data all 15.1.0-1 [8878 kB]
 86s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fonttools amd64 4.46.0-1build2 [1436 kB]
 86s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B]
 86s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-platformdirs all 4.3.6-1 [16.8 kB]
 86s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB]
 86s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-jupyter-core all 5.7.2-4 [28.0 kB]
 86s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-kiwisolver amd64 1.4.7-2 [55.1 kB]
 86s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB]
 86s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-matplotlib amd64 3.8.3-3 [4545 kB]
 86s Get:93 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-nbformat all 5.9.1-1 [41.2 kB]
 86s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-5 [5087 kB]
 86s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas all 2.2.3+dfsg-5 [3112 kB]
 86s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tenacity all 8.5.0-0ubuntu1 [17.0 kB]
 86s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-plotly all 5.20.0+dfsg-1 [2766 kB]
 86s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB]
 86s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB]
 86s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 recan all 0.5+dfsg-1 [18.1 kB]
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184s Setting up recan (0.5+dfsg-1) ...
184s Setting up autopkgtest-satdep (0) ...
187s (Reading database ... 101132 files and directories currently installed.)
187s Removing autopkgtest-satdep (0) ...
187s autopkgtest [08:45:32]: test run-unit-test: [-----------------------
188s /tmp/autopkgtest.gjQ2qO/build.GTN/src/test /tmp/autopkgtest.gjQ2qO/build.GTN/src
188s Testing with python3.13 in /tmp/autopkgtest.gjQ2qO/build.GTN/src/test:
188s ============================= test session starts ==============================
188s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0
188s rootdir: /tmp/autopkgtest.gjQ2qO/build.GTN/src
188s plugins: typeguard-4.4.1
188s collected 0 items / 1 error
188s 
188s ==================================== ERRORS ====================================
188s ________________________ ERROR collecting test/test.py _________________________
188s ImportError while importing test module '/tmp/autopkgtest.gjQ2qO/build.GTN/src/test/test.py'.
188s Hint: make sure your test modules/packages have valid Python names.
188s Traceback:
188s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
188s     return _bootstrap._gcd_import(name[level:], package, level)
188s test.py:5: in <module>
188s     from Bio import AlignIO
188s /usr/lib/python3/dist-packages/Bio/AlignIO/__init__.py:141: in <module>
188s     from Bio.Align import MultipleSeqAlignment
188s /usr/lib/python3/dist-packages/Bio/Align/__init__.py:32: in <module>
188s     raise MissingPythonDependencyError(
188s E   Bio.MissingPythonDependencyError: Please install NumPy if you want to use Bio.Align. See http://www.numpy.org/
188s =========================== short test summary info ============================
188s ERROR test.py
188s !!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection !!!!!!!!!!!!!!!!!!!!
188s =============================== 1 error in 0.17s ===============================
188s autopkgtest [08:45:33]: test run-unit-test: -----------------------]
189s run-unit-test        FAIL non-zero exit status 2
189s autopkgtest [08:45:34]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
189s autopkgtest [08:45:34]: @@@@@@@@@@@@@@@@@@@@ summary
189s run-unit-test        FAIL non-zero exit status 2
206s nova [W] Skipping flock for amd64
206s Creating nova instance adt-plucky-amd64-recan-20241113-084225-juju-7f2275-prod-proposed-migration-environment-20-e8137761-38cb-49df-9186-b016e6d9c67b from image adt/ubuntu-plucky-amd64-server-20241113.img (UUID 76b850f9-98f4-4b79-af06-fa11000b95b2)...