0s autopkgtest [22:45:58]: starting date and time: 2025-03-15 22:45:58+0000 0s autopkgtest [22:45:58]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [22:45:58]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.k8h67nyc/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade reapr --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-27.secgroup --name adt-plucky-amd64-reapr-20250315-224558-juju-7f2275-prod-proposed-migration-environment-2-260c1e73-a98b-446d-8342-17b77301f851 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 53s autopkgtest [22:46:51]: testbed dpkg architecture: amd64 53s autopkgtest [22:46:51]: testbed apt version: 2.9.31ubuntu1 54s autopkgtest [22:46:52]: @@@@@@@@@@@@@@@@@@@@ test bed setup 54s autopkgtest [22:46:52]: testbed release detected to be: None 55s autopkgtest [22:46:53]: updating testbed package index (apt update) 55s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 55s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 55s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 56s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 56s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 56s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 56s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 56s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 56s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 56s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 56s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 56s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 56s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 56s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 56s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 56s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 56s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 56s Fetched 1265 kB in 1s (1354 kB/s) 57s Reading package lists... 58s Reading package lists... 58s Building dependency tree... 58s Reading state information... 58s Calculating upgrade... 58s Calculating upgrade... 58s The following package was automatically installed and is no longer required: 58s libnl-genl-3-200 58s Use 'sudo apt autoremove' to remove it. 59s The following NEW packages will be installed: 59s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 59s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 59s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 59s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 59s The following packages will be upgraded: 59s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 59s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base 59s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools 59s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0 59s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 59s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0 59s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1 59s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64 59s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6 59s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200 59s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib 59s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2 59s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 59s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 59s linux-firmware linux-generic linux-headers-generic linux-headers-virtual 59s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 59s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 59s parted pci.ids pciutils pinentry-curses python-apt-common python3 59s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi 59s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal 59s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13 59s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd 59s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd 59s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail 59s xz-utils 59s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 59s Need to get 829 MB of archives. 59s After this operation, 325 MB of additional disk space will be used. 59s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 59s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 59s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 59s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 60s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 60s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 60s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 60s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 60s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 60s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 60s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 60s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 60s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 60s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 60s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 60s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 60s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 60s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 60s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 60s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 60s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 60s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 60s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 60s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 60s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 61s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 61s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 61s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 61s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 61s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 61s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 61s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 61s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 61s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 61s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 61s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 61s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 61s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 61s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 61s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 61s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 61s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 61s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 61s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 61s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 61s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 61s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 61s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 61s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 61s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 61s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 61s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 61s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 61s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 61s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 61s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 61s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 61s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 61s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 61s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 61s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 61s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 61s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 61s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 61s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 61s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 62s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 62s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 62s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 62s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 62s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 62s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 62s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 62s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 62s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 62s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 62s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 62s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 62s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 62s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 62s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 62s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 62s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 62s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 62s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 62s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 62s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 62s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 62s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 62s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 62s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 62s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 62s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 62s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 62s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 62s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 62s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 62s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 62s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 62s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 62s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 62s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 63s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 63s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 63s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 63s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 63s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 63s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 63s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 86s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 86s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 86s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 86s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 86s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 86s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 86s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 86s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 88s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 88s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 93s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 93s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 93s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 93s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 93s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 93s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 93s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 93s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 93s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 93s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 94s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 94s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 94s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 94s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 94s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 94s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 94s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 94s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 94s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 94s Preconfiguring packages ... 94s Fetched 829 MB in 35s (23.7 MB/s) 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109140 files and directories currently installed.) 94s Preparing to unpack .../ncurses-bin_6.5+20250216-2_amd64.deb ... 94s Unpacking ncurses-bin (6.5+20250216-2) over (6.5+20250216-1) ... 94s Setting up ncurses-bin (6.5+20250216-2) ... 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109140 files and directories currently installed.) 95s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu1_amd64.deb ... 95s Unpacking libc-dev-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 95s Preparing to unpack .../libc6-dev_2.41-1ubuntu1_amd64.deb ... 95s Unpacking libc6-dev:amd64 (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 95s Preparing to unpack .../locales_2.41-1ubuntu1_all.deb ... 95s Unpacking locales (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 95s Preparing to unpack .../libc6_2.41-1ubuntu1_amd64.deb ... 95s Checking for services that may need to be restarted... 95s Checking init scripts... 95s Checking for services that may need to be restarted... 95s Checking init scripts... 95s Stopping some services possibly affected by the upgrade (will be restarted later): 95s cron: stopping...done. 95s 95s Unpacking libc6:amd64 (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 96s Setting up libc6:amd64 (2.41-1ubuntu1) ... 96s Checking for services that may need to be restarted... 96s Checking init scripts... 96s Restarting services possibly affected by the upgrade: 96s cron: restarting...done. 96s 96s Services restarted successfully. 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109141 files and directories currently installed.) 96s Preparing to unpack .../libc-bin_2.41-1ubuntu1_amd64.deb ... 96s Unpacking libc-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 96s Setting up libc-bin (2.41-1ubuntu1) ... 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109141 files and directories currently installed.) 96s Preparing to unpack .../linux-libc-dev_6.14.0-10.10_amd64.deb ... 96s Unpacking linux-libc-dev:amd64 (6.14.0-10.10) over (6.12.0-16.16) ... 97s Preparing to unpack .../libatomic1_15-20250222-0ubuntu1_amd64.deb ... 97s Unpacking libatomic1:amd64 (15-20250222-0ubuntu1) over (15-20250213-1ubuntu1) ... 97s Preparing to unpack .../gcc-15-base_15-20250222-0ubuntu1_amd64.deb ... 97s Unpacking gcc-15-base:amd64 (15-20250222-0ubuntu1) over (15-20250213-1ubuntu1) ... 97s Setting up gcc-15-base:amd64 (15-20250222-0ubuntu1) ... 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 97s Preparing to unpack .../libgcc-s1_15-20250222-0ubuntu1_amd64.deb ... 97s Unpacking libgcc-s1:amd64 (15-20250222-0ubuntu1) over (15-20250213-1ubuntu1) ... 97s Setting up libgcc-s1:amd64 (15-20250222-0ubuntu1) ... 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 97s Preparing to unpack .../libstdc++6_15-20250222-0ubuntu1_amd64.deb ... 97s Unpacking libstdc++6:amd64 (15-20250222-0ubuntu1) over (15-20250213-1ubuntu1) ... 97s Setting up libstdc++6:amd64 (15-20250222-0ubuntu1) ... 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 97s Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ... 97s Unpacking ncurses-base (6.5+20250216-2) over (6.5+20250216-1) ... 97s Setting up ncurses-base (6.5+20250216-2) ... 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 97s Preparing to unpack .../ncurses-term_6.5+20250216-2_all.deb ... 97s Unpacking ncurses-term (6.5+20250216-2) over (6.5+20250216-1) ... 98s Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ... 98s Unpacking liblz4-1:amd64 (1.10.0-4) over (1.10.0-3) ... 98s Setting up liblz4-1:amd64 (1.10.0-4) ... 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 98s Preparing to unpack .../liblzma5_5.6.4-1_amd64.deb ... 98s Unpacking liblzma5:amd64 (5.6.4-1) over (5.6.3-1) ... 98s Setting up liblzma5:amd64 (5.6.4-1) ... 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 98s Preparing to unpack .../libsystemd0_257.3-1ubuntu3_amd64.deb ... 98s Unpacking libsystemd0:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 98s Setting up libsystemd0:amd64 (257.3-1ubuntu3) ... 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 98s Preparing to unpack .../libnss-systemd_257.3-1ubuntu3_amd64.deb ... 98s Unpacking libnss-systemd:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 98s Preparing to unpack .../systemd-sysv_257.3-1ubuntu3_amd64.deb ... 98s Unpacking systemd-sysv (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 98s Preparing to unpack .../systemd-resolved_257.3-1ubuntu3_amd64.deb ... 98s Unpacking systemd-resolved (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 98s Preparing to unpack .../libpam-systemd_257.3-1ubuntu3_amd64.deb ... 98s Unpacking libpam-systemd:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 98s Preparing to unpack .../libsystemd-shared_257.3-1ubuntu3_amd64.deb ... 98s Unpacking libsystemd-shared:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 98s Setting up libsystemd-shared:amd64 (257.3-1ubuntu3) ... 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 98s Preparing to unpack .../systemd_257.3-1ubuntu3_amd64.deb ... 98s Unpacking systemd (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 99s Preparing to unpack .../systemd-timesyncd_257.3-1ubuntu3_amd64.deb ... 99s Unpacking systemd-timesyncd (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 99s Preparing to unpack .../systemd-cryptsetup_257.3-1ubuntu3_amd64.deb ... 99s Unpacking systemd-cryptsetup (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 99s Preparing to unpack .../udev_257.3-1ubuntu3_amd64.deb ... 99s Unpacking udev (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 99s Preparing to unpack .../libudev1_257.3-1ubuntu3_amd64.deb ... 99s Unpacking libudev1:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 99s Setting up libudev1:amd64 (257.3-1ubuntu3) ... 99s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 99s Preparing to unpack .../libaudit-common_1%3a4.0.2-2ubuntu2_all.deb ... 99s Unpacking libaudit-common (1:4.0.2-2ubuntu2) over (1:4.0.2-2ubuntu1) ... 99s Setting up libaudit-common (1:4.0.2-2ubuntu2) ... 99s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 99s Preparing to unpack .../libcap-ng0_0.8.5-4build1_amd64.deb ... 99s Unpacking libcap-ng0:amd64 (0.8.5-4build1) over (0.8.5-4) ... 99s Setting up libcap-ng0:amd64 (0.8.5-4build1) ... 99s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 99s Preparing to unpack .../libaudit1_1%3a4.0.2-2ubuntu2_amd64.deb ... 99s Unpacking libaudit1:amd64 (1:4.0.2-2ubuntu2) over (1:4.0.2-2ubuntu1) ... 99s Setting up libaudit1:amd64 (1:4.0.2-2ubuntu2) ... 99s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 99s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu6_amd64.deb ... 99s Unpacking libseccomp2:amd64 (2.5.5-1ubuntu6) over (2.5.5-1ubuntu5) ... 99s Setting up libseccomp2:amd64 (2.5.5-1ubuntu6) ... 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 100s Preparing to unpack .../libselinux1_3.7-3ubuntu3_amd64.deb ... 100s Unpacking libselinux1:amd64 (3.7-3ubuntu3) over (3.7-3ubuntu2) ... 100s Setting up libselinux1:amd64 (3.7-3ubuntu3) ... 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 100s Preparing to unpack .../libapparmor1_4.1.0~beta5-0ubuntu8_amd64.deb ... 100s Unpacking libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) over (4.1.0~beta5-0ubuntu5) ... 100s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ... 100s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ... 100s Setting up libapt-pkg7.0:amd64 (2.9.33) ... 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 100s Preparing to unpack .../archives/apt_2.9.33_amd64.deb ... 100s Unpacking apt (2.9.33) over (2.9.31ubuntu1) ... 100s Setting up apt (2.9.33) ... 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 101s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 101s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 101s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 101s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 101s Setting up python3-minimal (3.13.2-2) ... 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 101s Preparing to unpack .../0-python3_3.13.2-2_amd64.deb ... 101s Unpacking python3 (3.13.2-2) over (3.13.2-1) ... 101s Preparing to unpack .../1-libpython3.13_3.13.2-2_amd64.deb ... 101s Unpacking libpython3.13:amd64 (3.13.2-2) over (3.13.2-1) ... 101s Preparing to unpack .../2-media-types_13.0.0_all.deb ... 101s Unpacking media-types (13.0.0) over (12.0.0) ... 101s Preparing to unpack .../3-libncurses6_6.5+20250216-2_amd64.deb ... 101s Unpacking libncurses6:amd64 (6.5+20250216-2) over (6.5+20250216-1) ... 101s Preparing to unpack .../4-libncursesw6_6.5+20250216-2_amd64.deb ... 101s Unpacking libncursesw6:amd64 (6.5+20250216-2) over (6.5+20250216-1) ... 101s Preparing to unpack .../5-libtinfo6_6.5+20250216-2_amd64.deb ... 101s Unpacking libtinfo6:amd64 (6.5+20250216-2) over (6.5+20250216-1) ... 101s Setting up libtinfo6:amd64 (6.5+20250216-2) ... 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 101s Preparing to unpack .../0-libsqlite3-0_3.46.1-2_amd64.deb ... 101s Unpacking libsqlite3-0:amd64 (3.46.1-2) over (3.46.1-1) ... 101s Preparing to unpack .../1-python3.13_3.13.2-2_amd64.deb ... 102s Unpacking python3.13 (3.13.2-2) over (3.13.2-1) ... 102s Preparing to unpack .../2-python3.13-minimal_3.13.2-2_amd64.deb ... 102s Unpacking python3.13-minimal (3.13.2-2) over (3.13.2-1) ... 102s Preparing to unpack .../3-libpython3.13-minimal_3.13.2-2_amd64.deb ... 102s Unpacking libpython3.13-minimal:amd64 (3.13.2-2) over (3.13.2-1) ... 102s Preparing to unpack .../4-libpython3.13-stdlib_3.13.2-2_amd64.deb ... 102s Unpacking libpython3.13-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 102s Preparing to unpack .../5-libpython3-stdlib_3.13.2-2_amd64.deb ... 102s Unpacking libpython3-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 102s Preparing to unpack .../6-rsync_3.4.1+ds1-3_amd64.deb ... 102s Unpacking rsync (3.4.1+ds1-3) over (3.4.1-0syncable1) ... 102s Selecting previously unselected package libdebuginfod-common. 102s Preparing to unpack .../7-libdebuginfod-common_0.192-4_all.deb ... 102s Unpacking libdebuginfod-common (0.192-4) ... 102s Preparing to unpack .../8-libsemanage-common_3.7-2.1build1_all.deb ... 102s Unpacking libsemanage-common (3.7-2.1build1) over (3.7-2.1) ... 102s Setting up libsemanage-common (3.7-2.1build1) ... 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109155 files and directories currently installed.) 102s Preparing to unpack .../libsemanage2_3.7-2.1build1_amd64.deb ... 102s Unpacking libsemanage2:amd64 (3.7-2.1build1) over (3.7-2.1) ... 102s Setting up libsemanage2:amd64 (3.7-2.1build1) ... 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109155 files and directories currently installed.) 102s Preparing to unpack .../libassuan9_3.0.2-2_amd64.deb ... 102s Unpacking libassuan9:amd64 (3.0.2-2) over (3.0.1-2) ... 102s Setting up libassuan9:amd64 (3.0.2-2) ... 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109155 files and directories currently installed.) 102s Preparing to unpack .../00-gir1.2-girepository-2.0_1.83.4-1_amd64.deb ... 102s Unpacking gir1.2-girepository-2.0:amd64 (1.83.4-1) over (1.82.0-4) ... 103s Preparing to unpack .../01-gir1.2-glib-2.0_2.84.0-1_amd64.deb ... 103s Unpacking gir1.2-glib-2.0:amd64 (2.84.0-1) over (2.83.5-1) ... 103s Preparing to unpack .../02-libglib2.0-0t64_2.84.0-1_amd64.deb ... 103s Unpacking libglib2.0-0t64:amd64 (2.84.0-1) over (2.83.5-1) ... 103s Preparing to unpack .../03-libgirepository-1.0-1_1.83.4-1_amd64.deb ... 103s Unpacking libgirepository-1.0-1:amd64 (1.83.4-1) over (1.82.0-4) ... 103s Preparing to unpack .../04-libestr0_0.1.11-2_amd64.deb ... 103s Unpacking libestr0:amd64 (0.1.11-2) over (0.1.11-1build1) ... 103s Preparing to unpack .../05-libglib2.0-data_2.84.0-1_all.deb ... 103s Unpacking libglib2.0-data (2.84.0-1) over (2.83.5-1) ... 103s Preparing to unpack .../06-python3-newt_0.52.24-4ubuntu2_amd64.deb ... 103s Unpacking python3-newt:amd64 (0.52.24-4ubuntu2) over (0.52.24-4ubuntu1) ... 103s Preparing to unpack .../07-libnewt0.52_0.52.24-4ubuntu2_amd64.deb ... 103s Unpacking libnewt0.52:amd64 (0.52.24-4ubuntu2) over (0.52.24-4ubuntu1) ... 103s Preparing to unpack .../08-libxml2_2.12.7+dfsg+really2.9.14-0.2ubuntu5_amd64.deb ... 103s Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) over (2.12.7+dfsg+really2.9.14-0.2ubuntu4) ... 103s Preparing to unpack .../09-python-apt-common_2.9.9build1_all.deb ... 103s Unpacking python-apt-common (2.9.9build1) over (2.9.9) ... 103s Preparing to unpack .../10-python3-apt_2.9.9build1_amd64.deb ... 103s Unpacking python3-apt (2.9.9build1) over (2.9.9) ... 103s Preparing to unpack .../11-python3-cffi-backend_1.17.1-2build2_amd64.deb ... 103s Unpacking python3-cffi-backend:amd64 (1.17.1-2build2) over (1.17.1-2build1) ... 103s Preparing to unpack .../12-python3-dbus_1.3.2-5build5_amd64.deb ... 103s Unpacking python3-dbus (1.3.2-5build5) over (1.3.2-5build4) ... 104s Preparing to unpack .../13-python3-gi_3.50.0-4build1_amd64.deb ... 104s Unpacking python3-gi (3.50.0-4build1) over (3.50.0-4) ... 104s Preparing to unpack .../14-python3-yaml_6.0.2-1build2_amd64.deb ... 104s Unpacking python3-yaml (6.0.2-1build2) over (6.0.2-1build1) ... 104s Preparing to unpack .../15-rsyslog_8.2412.0-2ubuntu2_amd64.deb ... 104s Unpacking rsyslog (8.2412.0-2ubuntu2) over (8.2412.0-2ubuntu1) ... 104s Preparing to unpack .../16-whiptail_0.52.24-4ubuntu2_amd64.deb ... 104s Unpacking whiptail (0.52.24-4ubuntu2) over (0.52.24-4ubuntu1) ... 104s Preparing to unpack .../17-ubuntu-minimal_1.549_amd64.deb ... 104s Unpacking ubuntu-minimal (1.549) over (1.548) ... 104s Preparing to unpack .../18-apparmor_4.1.0~beta5-0ubuntu8_amd64.deb ... 105s Unpacking apparmor (4.1.0~beta5-0ubuntu8) over (4.1.0~beta5-0ubuntu5) ... 105s Preparing to unpack .../19-dosfstools_4.2-1.2_amd64.deb ... 105s Unpacking dosfstools (4.2-1.2) over (4.2-1.1build1) ... 105s Preparing to unpack .../20-libnl-genl-3-200_3.7.0-1_amd64.deb ... 105s Unpacking libnl-genl-3-200:amd64 (3.7.0-1) over (3.7.0-0.3build2) ... 105s Preparing to unpack .../21-libnl-route-3-200_3.7.0-1_amd64.deb ... 105s Unpacking libnl-route-3-200:amd64 (3.7.0-1) over (3.7.0-0.3build2) ... 105s Preparing to unpack .../22-libnl-3-200_3.7.0-1_amd64.deb ... 105s Unpacking libnl-3-200:amd64 (3.7.0-1) over (3.7.0-0.3build2) ... 105s Preparing to unpack .../23-parted_3.6-5_amd64.deb ... 105s Unpacking parted (3.6-5) over (3.6-4build1) ... 105s Preparing to unpack .../24-libparted2t64_3.6-5_amd64.deb ... 105s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 105s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 105s Unpacking libparted2t64:amd64 (3.6-5) over (3.6-4build1) ... 105s Preparing to unpack .../25-pci.ids_0.0~2025.03.09-1_all.deb ... 105s Unpacking pci.ids (0.0~2025.03.09-1) over (0.0~2025.02.12-1) ... 105s Preparing to unpack .../26-pciutils_1%3a3.13.0-2_amd64.deb ... 105s Unpacking pciutils (1:3.13.0-2) over (1:3.13.0-1) ... 106s Preparing to unpack .../27-libpci3_1%3a3.13.0-2_amd64.deb ... 106s Unpacking libpci3:amd64 (1:3.13.0-2) over (1:3.13.0-1) ... 106s Preparing to unpack .../28-strace_6.13+ds-1ubuntu1_amd64.deb ... 106s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 106s Preparing to unpack .../29-xz-utils_5.6.4-1_amd64.deb ... 106s Unpacking xz-utils (5.6.4-1) over (5.6.3-1) ... 106s Preparing to unpack .../30-ubuntu-standard_1.549_amd64.deb ... 106s Unpacking ubuntu-standard (1.549) over (1.548) ... 106s Preparing to unpack .../31-libgprofng0_2.44-3ubuntu1_amd64.deb ... 106s Unpacking libgprofng0:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 106s Preparing to unpack .../32-libctf0_2.44-3ubuntu1_amd64.deb ... 106s Unpacking libctf0:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 106s Preparing to unpack .../33-libctf-nobfd0_2.44-3ubuntu1_amd64.deb ... 106s Unpacking libctf-nobfd0:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 106s Preparing to unpack .../34-binutils-x86-64-linux-gnu_2.44-3ubuntu1_amd64.deb ... 106s Unpacking binutils-x86-64-linux-gnu (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 106s Preparing to unpack .../35-libbinutils_2.44-3ubuntu1_amd64.deb ... 106s Unpacking libbinutils:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 106s Preparing to unpack .../36-binutils_2.44-3ubuntu1_amd64.deb ... 106s Unpacking binutils (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 106s Preparing to unpack .../37-binutils-common_2.44-3ubuntu1_amd64.deb ... 106s Unpacking binutils-common:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 106s Preparing to unpack .../38-libsframe1_2.44-3ubuntu1_amd64.deb ... 106s Unpacking libsframe1:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 106s Preparing to unpack .../39-hwdata_0.393-3_all.deb ... 106s Unpacking hwdata (0.393-3) over (0.392-1) ... 106s Selecting previously unselected package pnp.ids. 106s Preparing to unpack .../40-pnp.ids_0.393-3_all.deb ... 106s Unpacking pnp.ids (0.393-3) ... 106s Preparing to unpack .../41-linux-tools-common_6.14.0-10.10_all.deb ... 106s Unpacking linux-tools-common (6.14.0-10.10) over (6.12.0-16.16) ... 106s Selecting previously unselected package bpftool. 106s Preparing to unpack .../42-bpftool_7.6.0+6.14.0-10.10_amd64.deb ... 106s Unpacking bpftool (7.6.0+6.14.0-10.10) ... 106s Preparing to unpack .../43-python3-markupsafe_2.1.5-1build4_amd64.deb ... 106s Unpacking python3-markupsafe (2.1.5-1build4) over (2.1.5-1build3) ... 107s Preparing to unpack .../44-python3-jinja2_3.1.5-2ubuntu1_all.deb ... 107s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 107s Preparing to unpack .../45-cloud-init-base_25.1-0ubuntu3_all.deb ... 107s Unpacking cloud-init-base (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 107s Preparing to unpack .../46-libbrotli1_1.1.0-2build4_amd64.deb ... 107s Unpacking libbrotli1:amd64 (1.1.0-2build4) over (1.1.0-2build3) ... 107s Preparing to unpack .../47-curl_8.12.1-3ubuntu1_amd64.deb ... 107s Unpacking curl (8.12.1-3ubuntu1) over (8.12.1-2ubuntu1) ... 107s Preparing to unpack .../48-libcurl4t64_8.12.1-3ubuntu1_amd64.deb ... 107s Unpacking libcurl4t64:amd64 (8.12.1-3ubuntu1) over (8.12.1-2ubuntu1) ... 107s Preparing to unpack .../49-exfatprogs_1.2.8-1_amd64.deb ... 107s Unpacking exfatprogs (1.2.8-1) over (1.2.7-3) ... 107s Preparing to unpack .../50-libcurl3t64-gnutls_8.12.1-3ubuntu1_amd64.deb ... 107s Unpacking libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) over (8.12.1-2ubuntu1) ... 107s Preparing to unpack .../51-fwupd_2.0.6-4_amd64.deb ... 107s Unpacking fwupd (2.0.6-4) over (2.0.6-3) ... 108s Preparing to unpack .../52-libfwupd3_2.0.6-4_amd64.deb ... 108s Unpacking libfwupd3:amd64 (2.0.6-4) over (2.0.6-3) ... 108s Preparing to unpack .../53-libmm-glib0_1.23.4-0ubuntu3_amd64.deb ... 108s Unpacking libmm-glib0:amd64 (1.23.4-0ubuntu3) over (1.23.4-0ubuntu2) ... 108s Preparing to unpack .../54-htop_3.4.0-2_amd64.deb ... 108s Unpacking htop (3.4.0-2) over (3.3.0-5) ... 108s Preparing to unpack .../55-linux-firmware_20250310.git9e1370d3-0ubuntu1_amd64.deb ... 108s Unpacking linux-firmware (20250310.git9e1370d3-0ubuntu1) over (20250204.git0fd450ee-0ubuntu1) ... 111s Preparing to unpack .../56-initramfs-tools_0.146ubuntu1_all.deb ... 111s Unpacking initramfs-tools (0.146ubuntu1) over (0.145ubuntu3) ... 111s Preparing to unpack .../57-initramfs-tools-core_0.146ubuntu1_all.deb ... 111s Unpacking initramfs-tools-core (0.146ubuntu1) over (0.145ubuntu3) ... 111s Preparing to unpack .../58-initramfs-tools-bin_0.146ubuntu1_amd64.deb ... 111s Unpacking initramfs-tools-bin (0.146ubuntu1) over (0.145ubuntu3) ... 111s Selecting previously unselected package libdebuginfod1t64:amd64. 111s Preparing to unpack .../59-libdebuginfod1t64_0.192-4_amd64.deb ... 111s Unpacking libdebuginfod1t64:amd64 (0.192-4) ... 111s Preparing to unpack .../60-libftdi1-2_1.5-8build1_amd64.deb ... 111s Unpacking libftdi1-2:amd64 (1.5-8build1) over (1.5-8) ... 111s Preparing to unpack .../61-libgpgme11t64_1.24.2-1ubuntu2_amd64.deb ... 111s Unpacking libgpgme11t64:amd64 (1.24.2-1ubuntu2) over (1.24.2-1ubuntu1) ... 111s Preparing to unpack .../62-libjemalloc2_5.3.0-3_amd64.deb ... 111s Unpacking libjemalloc2:amd64 (5.3.0-3) over (5.3.0-2build1) ... 112s Selecting previously unselected package linux-modules-6.14.0-10-generic. 112s Preparing to unpack .../63-linux-modules-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 112s Unpacking linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 112s Selecting previously unselected package linux-image-6.14.0-10-generic. 112s Preparing to unpack .../64-linux-image-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 112s Unpacking linux-image-6.14.0-10-generic (6.14.0-10.10) ... 112s Selecting previously unselected package linux-modules-extra-6.14.0-10-generic. 112s Preparing to unpack .../65-linux-modules-extra-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 112s Unpacking linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 113s Preparing to unpack .../66-linux-generic_6.14.0-10.10_amd64.deb ... 113s Unpacking linux-generic (6.14.0-10.10) over (6.12.0-16.16+2) ... 113s Preparing to unpack .../67-linux-image-generic_6.14.0-10.10_amd64.deb ... 113s Unpacking linux-image-generic (6.14.0-10.10) over (6.12.0-16.16+2) ... 113s Preparing to unpack .../68-linux-virtual_6.14.0-10.10_amd64.deb ... 113s Unpacking linux-virtual (6.14.0-10.10) over (6.12.0-16.16+2) ... 113s Preparing to unpack .../69-linux-image-virtual_6.14.0-10.10_amd64.deb ... 113s Unpacking linux-image-virtual (6.14.0-10.10) over (6.12.0-16.16+2) ... 113s Preparing to unpack .../70-linux-headers-virtual_6.14.0-10.10_amd64.deb ... 113s Unpacking linux-headers-virtual (6.14.0-10.10) over (6.12.0-16.16+2) ... 113s Selecting previously unselected package linux-headers-6.14.0-10. 113s Preparing to unpack .../71-linux-headers-6.14.0-10_6.14.0-10.10_all.deb ... 113s Unpacking linux-headers-6.14.0-10 (6.14.0-10.10) ... 117s Selecting previously unselected package linux-headers-6.14.0-10-generic. 117s Preparing to unpack .../72-linux-headers-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 117s Unpacking linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 119s Preparing to unpack .../73-linux-headers-generic_6.14.0-10.10_amd64.deb ... 119s Unpacking linux-headers-generic (6.14.0-10.10) over (6.12.0-16.16+2) ... 119s Selecting previously unselected package linux-perf. 119s Preparing to unpack .../74-linux-perf_6.14.0-10.10_amd64.deb ... 119s Unpacking linux-perf (6.14.0-10.10) ... 119s Selecting previously unselected package linux-tools-6.14.0-10. 119s Preparing to unpack .../75-linux-tools-6.14.0-10_6.14.0-10.10_amd64.deb ... 119s Unpacking linux-tools-6.14.0-10 (6.14.0-10.10) ... 119s Selecting previously unselected package linux-tools-6.14.0-10-generic. 119s Preparing to unpack .../76-linux-tools-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 119s Unpacking linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 119s Preparing to unpack .../77-pinentry-curses_1.3.1-2ubuntu3_amd64.deb ... 119s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 119s Preparing to unpack .../78-python3-lazr.uri_1.0.6-6_all.deb ... 119s Unpacking python3-lazr.uri (1.0.6-6) over (1.0.6-5) ... 119s Preparing to unpack .../79-python3-rpds-py_0.21.0-2ubuntu2_amd64.deb ... 119s Unpacking python3-rpds-py (0.21.0-2ubuntu2) over (0.21.0-2ubuntu1) ... 119s Preparing to unpack .../80-python3-systemd_235-1build6_amd64.deb ... 119s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 119s Preparing to unpack .../81-python3.13-gdbm_3.13.2-2_amd64.deb ... 119s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 119s Preparing to unpack .../82-ubuntu-kernel-accessories_1.549_amd64.deb ... 119s Unpacking ubuntu-kernel-accessories (1.549) over (1.548) ... 119s Preparing to unpack .../83-cloud-init_25.1-0ubuntu3_all.deb ... 119s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 119s Preparing to unpack .../84-python3-bcrypt_4.2.0-2.1build1_amd64.deb ... 120s Unpacking python3-bcrypt (4.2.0-2.1build1) over (4.2.0-2.1) ... 120s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 120s Setting up media-types (13.0.0) ... 120s Installing new version of config file /etc/mime.types ... 120s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 120s Setting up ubuntu-kernel-accessories (1.549) ... 120s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 120s Setting up pci.ids (0.0~2025.03.09-1) ... 120s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 120s Setting up apt-utils (2.9.33) ... 120s Setting up libdebuginfod-common (0.192-4) ... 120s Setting up exfatprogs (1.2.8-1) ... 120s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 120s Setting up bpftool (7.6.0+6.14.0-10.10) ... 120s Setting up libestr0:amd64 (0.1.11-2) ... 120s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 120s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 120s Setting up dosfstools (4.2-1.2) ... 120s Setting up rsyslog (8.2412.0-2ubuntu2) ... 120s info: The user `syslog' is already a member of `adm'. 121s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 121s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 121s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 121s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 121s Setting up systemd (257.3-1ubuntu3) ... 121s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 121s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 121s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 122s Setting up libparted2t64:amd64 (3.6-5) ... 122s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 122s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 122s Setting up linux-headers-generic (6.14.0-10.10) ... 122s Setting up libjemalloc2:amd64 (5.3.0-3) ... 122s Setting up locales (2.41-1ubuntu1) ... 122s Installing new version of config file /etc/locale.alias ... 122s Generating locales (this might take a while)... 124s en_US.UTF-8... done 124s Generation complete. 124s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 124s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 124s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 124s Installing new version of config file /etc/apparmor.d/fusermount3 ... 124s Installing new version of config file /etc/apparmor.d/lsusb ... 124s Installing new version of config file /etc/apparmor.d/openvpn ... 126s Reloading AppArmor profiles 127s Setting up libftdi1-2:amd64 (1.5-8build1) ... 127s Setting up libglib2.0-data (2.84.0-1) ... 127s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 127s Setting up libncurses6:amd64 (6.5+20250216-2) ... 127s Setting up strace (6.13+ds-1ubuntu1) ... 127s Setting up xz-utils (5.6.4-1) ... 127s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 128s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 128s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 128s Setting up udev (257.3-1ubuntu3) ... 129s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 131s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 131s Setting up libpci3:amd64 (1:3.13.0-2) ... 131s Setting up whiptail (0.52.24-4ubuntu2) ... 131s Setting up python-apt-common (2.9.9build1) ... 131s Setting up pnp.ids (0.393-3) ... 131s Setting up libnl-3-200:amd64 (3.7.0-1) ... 131s Setting up python3.13-minimal (3.13.2-2) ... 132s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ... 132s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 132s Setting up libc-dev-bin (2.41-1ubuntu1) ... 132s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 132s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 132s Setting up rsync (3.4.1+ds1-3) ... 133s rsync.service is a disabled or a static unit not running, not starting it. 133s Setting up python3.13-gdbm (3.13.2-2) ... 133s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 133s Setting up systemd-resolved (257.3-1ubuntu3) ... 133s Setting up initramfs-tools-bin (0.146ubuntu1) ... 133s Setting up ncurses-term (6.5+20250216-2) ... 133s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 133s Setting up libpython3.13:amd64 (3.13.2-2) ... 133s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 133s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 133s Setting up systemd-sysv (257.3-1ubuntu3) ... 133s Setting up linux-headers-virtual (6.14.0-10.10) ... 133s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 133s Setting up python3.13 (3.13.2-2) ... 134s Setting up htop (3.4.0-2) ... 134s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 136s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 136s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 136s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 136s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 136s Setting up parted (3.6-5) ... 136s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ... 136s Setting up python3 (3.13.2-2) ... 137s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ... 137s Setting up python3-markupsafe (2.1.5-1build4) ... 137s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 139s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 139s Setting up hwdata (0.393-3) ... 139s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 139s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 139s No schema files found: doing nothing. 139s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 139s Setting up linux-perf (6.14.0-10.10) ... 139s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 139s Setting up pciutils (1:3.13.0-2) ... 139s Setting up python3-rpds-py (0.21.0-2ubuntu2) ... 140s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 140s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 140s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 140s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 140s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 140s Setting up curl (8.12.1-3ubuntu1) ... 140s Setting up linux-image-virtual (6.14.0-10.10) ... 140s Setting up initramfs-tools-core (0.146ubuntu1) ... 140s Setting up linux-tools-common (6.14.0-10.10) ... 140s Setting up python3-systemd (235-1build6) ... 140s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 140s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 140s Setting up linux-image-generic (6.14.0-10.10) ... 140s Setting up python3-dbus (1.3.2-5build5) ... 140s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 140s Setting up initramfs-tools (0.146ubuntu1) ... 140s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 140s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 140s update-initramfs: deferring update (trigger activated) 140s Setting up linux-generic (6.14.0-10.10) ... 140s Setting up ubuntu-minimal (1.549) ... 140s Setting up python3-apt (2.9.9build1) ... 140s Setting up python3-bcrypt (4.2.0-2.1build1) ... 140s Setting up python3-yaml (6.0.2-1build2) ... 140s Setting up libfwupd3:amd64 (2.0.6-4) ... 140s Setting up python3-lazr.uri (1.0.6-6) ... 140s Setting up binutils (2.44-3ubuntu1) ... 140s Setting up ubuntu-standard (1.549) ... 140s Setting up cloud-init-base (25.1-0ubuntu3) ... 142s Setting up linux-virtual (6.14.0-10.10) ... 142s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 142s Setting up python3-gi (3.50.0-4build1) ... 142s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 142s Setting up fwupd (2.0.6-4) ... 143s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 143s Setting up cloud-init (25.1-0ubuntu3) ... 143s Processing triggers for man-db (2.13.0-1) ... 145s Processing triggers for dbus (1.16.2-1ubuntu1) ... 145s Processing triggers for shared-mime-info (2.4-5) ... 145s Warning: program compiled against libxml 212 using older 209 146s Processing triggers for libc-bin (2.41-1ubuntu1) ... 146s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 146s /etc/kernel/postinst.d/initramfs-tools: 146s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 146s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 158s /etc/kernel/postinst.d/zz-update-grub: 158s Sourcing file `/etc/default/grub' 158s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 158s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 158s Generating grub configuration file ... 158s Found linux image: /boot/vmlinuz-6.14.0-10-generic 158s Found initrd image: /boot/initrd.img-6.14.0-10-generic 158s Found linux image: /boot/vmlinuz-6.12.0-16-generic 158s Found initrd image: /boot/initrd.img-6.12.0-16-generic 158s Found linux image: /boot/vmlinuz-6.11.0-8-generic 158s Found initrd image: /boot/initrd.img-6.11.0-8-generic 158s Warning: os-prober will not be executed to detect other bootable partitions. 158s Systems on them will not be added to the GRUB boot configuration. 158s Check GRUB_DISABLE_OS_PROBER documentation entry. 158s Adding boot menu entry for UEFI Firmware Settings ... 158s done 158s Processing triggers for initramfs-tools (0.146ubuntu1) ... 158s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 158s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 171s Reading package lists... 171s Building dependency tree... 171s Reading state information... 171s Solving dependencies... 172s The following packages will be REMOVED: 172s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 172s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 172s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 172s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic* 172s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic* 172s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8* 172s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 172s linux-tools-6.12.0-16-generic* 172s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded. 172s After this operation, 545 MB disk space will be freed. 172s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 172s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 172s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 172s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 172s Removing libpython3.12t64:amd64 (3.12.9-1) ... 172s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 172s Removing libnsl2:amd64 (1.3.0-3build3) ... 172s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 172s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 173s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 175s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 176s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 178s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 179s /etc/kernel/postrm.d/initramfs-tools: 179s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 179s /etc/kernel/postrm.d/zz-update-grub: 179s Sourcing file `/etc/default/grub' 179s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 179s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 179s Generating grub configuration file ... 179s Found linux image: /boot/vmlinuz-6.14.0-10-generic 179s Found initrd image: /boot/initrd.img-6.14.0-10-generic 179s Found linux image: /boot/vmlinuz-6.12.0-16-generic 179s Found initrd image: /boot/initrd.img-6.12.0-16-generic 179s Warning: os-prober will not be executed to detect other bootable partitions. 179s Systems on them will not be added to the GRUB boot configuration. 179s Check GRUB_DISABLE_OS_PROBER documentation entry. 179s Adding boot menu entry for UEFI Firmware Settings ... 179s done 180s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ... 180s W: Removing the running kernel 180s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 180s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 180s /etc/kernel/postrm.d/initramfs-tools: 180s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic 180s /etc/kernel/postrm.d/zz-update-grub: 180s Sourcing file `/etc/default/grub' 180s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 180s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 180s Generating grub configuration file ... 180s Found linux image: /boot/vmlinuz-6.14.0-10-generic 180s Found initrd image: /boot/initrd.img-6.14.0-10-generic 180s Warning: os-prober will not be executed to detect other bootable partitions. 180s Systems on them will not be added to the GRUB boot configuration. 180s Check GRUB_DISABLE_OS_PROBER documentation entry. 180s Adding boot menu entry for UEFI Firmware Settings ... 180s done 180s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 181s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 182s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 183s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 183s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 183s Processing triggers for libc-bin (2.41-1ubuntu1) ... 183s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76972 files and directories currently installed.) 183s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 183s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 183s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 183s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 183s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed 183s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 183s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ... 183s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty 183s autopkgtest [22:49:01]: upgrading testbed (apt dist-upgrade and autopurge) 184s Reading package lists... 184s Building dependency tree... 184s Reading state information... 184s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 184s Starting 2 pkgProblemResolver with broken count: 0 184s Done 185s Entering ResolveByKeep 185s 185s Calculating upgrade... 186s The following packages will be upgraded: 186s libc-bin libc-dev-bin libc6 libc6-dev locales 186s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 186s Need to get 10.5 MB of archives. 186s After this operation, 1024 B of additional disk space will be used. 186s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 186s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 186s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 187s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 187s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 187s Preconfiguring packages ... 187s Fetched 10.5 MB in 1s (8545 kB/s) 187s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 187s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 187s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 187s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 187s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 187s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 188s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 188s Setting up libc6:amd64 (2.41-1ubuntu2) ... 188s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 188s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 188s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 188s Setting up libc-bin (2.41-1ubuntu2) ... 188s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 188s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 188s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 188s Setting up locales (2.41-1ubuntu2) ... 189s Generating locales (this might take a while)... 191s en_US.UTF-8... done 191s Generation complete. 191s Setting up libc-dev-bin (2.41-1ubuntu2) ... 191s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 191s Processing triggers for man-db (2.13.0-1) ... 191s Processing triggers for systemd (257.3-1ubuntu3) ... 192s Reading package lists... 193s Building dependency tree... 193s Reading state information... 193s Starting pkgProblemResolver with broken count: 0 193s Starting 2 pkgProblemResolver with broken count: 0 193s Done 193s Solving dependencies... 193s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 194s autopkgtest [22:49:12]: rebooting testbed after setup commands that affected boot 217s autopkgtest [22:49:35]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 220s autopkgtest [22:49:38]: @@@@@@@@@@@@@@@@@@@@ apt-source reapr 223s Get:1 http://ftpmaster.internal/ubuntu plucky/universe reapr 1.0.18+dfsg-7 (dsc) [2160 B] 223s Get:2 http://ftpmaster.internal/ubuntu plucky/universe reapr 1.0.18+dfsg-7 (tar) [74.6 kB] 223s Get:3 http://ftpmaster.internal/ubuntu plucky/universe reapr 1.0.18+dfsg-7 (diff) [320 kB] 223s gpgv: Signature made Sat Dec 21 22:15:37 2024 UTC 223s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 223s gpgv: issuer "tille@debian.org" 223s gpgv: Can't check signature: No public key 223s dpkg-source: warning: cannot verify inline signature for ./reapr_1.0.18+dfsg-7.dsc: no acceptable signature found 223s autopkgtest [22:49:41]: testing package reapr version 1.0.18+dfsg-7 224s autopkgtest [22:49:42]: build not needed 224s autopkgtest [22:49:42]: test test-example: preparing testbed 224s Reading package lists... 225s Building dependency tree... 225s Reading state information... 225s Starting pkgProblemResolver with broken count: 0 225s Starting 2 pkgProblemResolver with broken count: 0 225s Done 226s The following NEW packages will be installed: 226s bamtools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 226s libbambamc0 libbamtools2.5.2 libblas3 libcairo2 libdatrie1 libdeflate0 226s libfile-copy-link-perl libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 226s libharfbuzz0b libhts3t64 libhtscodecs2 libice6 libjbig0 libjpeg-turbo8 226s libjpeg8 libjsoncpp26 liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 226s libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 226s libtabixpp0t64 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 libwebp7 226s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 r-base 226s r-base-core r-cran-boot r-cran-class r-cran-cluster r-cran-codetools 226s r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix 226s r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial 226s r-cran-survival r-recommended reapr samtools smalt snpomatic tabix unzip 226s x11-common xdg-utils zip 226s 0 upgraded, 74 newly installed, 0 to remove and 0 not upgraded. 226s Need to get 67.4 MB of archives. 226s After this operation, 126 MB of additional disk space will be used. 226s Get:1 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbamtools2.5.2 amd64 2.5.2+dfsg-6build1 [144 kB] 226s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libjsoncpp26 amd64 1.9.6-3 [90.0 kB] 226s Get:3 http://ftpmaster.internal/ubuntu plucky/universe amd64 bamtools amd64 2.5.2+dfsg-6build1 [178 kB] 227s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 227s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 227s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 227s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 227s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 227s Get:9 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbambamc0 amd64 0.0.50-6build1 [40.3 kB] 227s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 227s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 227s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 227s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 227s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 227s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 227s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 227s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 227s Get:18 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfile-copy-link-perl all 0.200-1 [12.8 kB] 227s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 227s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 227s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 227s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 227s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhtscodecs2 amd64 1.6.1-2 [132 kB] 227s Get:24 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhts3t64 amd64 1.21+ds-1 [514 kB] 227s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 227s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 227s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 227s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 227s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 228s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 228s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 228s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 228s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 228s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 228s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 228s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 228s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 228s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 228s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 228s Get:40 http://ftpmaster.internal/ubuntu plucky/universe amd64 libtabixpp0t64 amd64 1.1.2-2.1build1 [10.8 kB] 228s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 228s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 228s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 228s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 228s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 228s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 228s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 228s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 228s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 228s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 228s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 228s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 229s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-boot all 1.3-31-1 [635 kB] 229s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cluster amd64 2.1.8.1-1 [579 kB] 229s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-foreign amd64 0.8.88-1 [250 kB] 229s Get:56 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 229s Get:57 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernsmooth amd64 2.23-26-1 [94.5 kB] 229s Get:58 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 229s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.167-1 [2320 kB] 229s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 230s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 230s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB] 230s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB] 230s Get:64 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 230s Get:65 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nnet amd64 7.3-20-1 [116 kB] 230s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatial amd64 7.3-18-1 [137 kB] 230s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 230s Get:68 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-recommended all 4.4.3-1 [2630 B] 230s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base all 4.4.3-1 [9290 B] 230s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 samtools amd64 1.21-1 [655 kB] 230s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 smalt amd64 0.7.6-13 [101 kB] 230s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 snpomatic amd64 1.0-7 [82.4 kB] 230s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 tabix amd64 1.21+ds-1 [642 kB] 230s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 reapr amd64 1.0.18+dfsg-7 [200 kB] 230s Preconfiguring packages ... 231s Fetched 67.4 MB in 4s (16.7 MB/s) 231s Selecting previously unselected package libbamtools2.5.2:amd64. 231s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 231s Preparing to unpack .../00-libbamtools2.5.2_2.5.2+dfsg-6build1_amd64.deb ... 231s Unpacking libbamtools2.5.2:amd64 (2.5.2+dfsg-6build1) ... 231s Selecting previously unselected package libjsoncpp26:amd64. 231s Preparing to unpack .../01-libjsoncpp26_1.9.6-3_amd64.deb ... 231s Unpacking libjsoncpp26:amd64 (1.9.6-3) ... 231s Selecting previously unselected package bamtools. 231s Preparing to unpack .../02-bamtools_2.5.2+dfsg-6build1_amd64.deb ... 231s Unpacking bamtools (2.5.2+dfsg-6build1) ... 231s Selecting previously unselected package fonts-dejavu-mono. 231s Preparing to unpack .../03-fonts-dejavu-mono_2.37-8_all.deb ... 231s Unpacking fonts-dejavu-mono (2.37-8) ... 231s Selecting previously unselected package fonts-dejavu-core. 231s Preparing to unpack .../04-fonts-dejavu-core_2.37-8_all.deb ... 231s Unpacking fonts-dejavu-core (2.37-8) ... 231s Selecting previously unselected package fontconfig-config. 231s Preparing to unpack .../05-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 231s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 231s Selecting previously unselected package libfontconfig1:amd64. 231s Preparing to unpack .../06-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 231s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 231s Selecting previously unselected package fontconfig. 231s Preparing to unpack .../07-fontconfig_2.15.0-2ubuntu1_amd64.deb ... 231s Unpacking fontconfig (2.15.0-2ubuntu1) ... 231s Selecting previously unselected package libbambamc0:amd64. 231s Preparing to unpack .../08-libbambamc0_0.0.50-6build1_amd64.deb ... 231s Unpacking libbambamc0:amd64 (0.0.50-6build1) ... 231s Selecting previously unselected package libblas3:amd64. 231s Preparing to unpack .../09-libblas3_3.12.1-2_amd64.deb ... 231s Unpacking libblas3:amd64 (3.12.1-2) ... 232s Selecting previously unselected package libpixman-1-0:amd64. 232s Preparing to unpack .../10-libpixman-1-0_0.44.0-3_amd64.deb ... 232s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 232s Selecting previously unselected package libxcb-render0:amd64. 232s Preparing to unpack .../11-libxcb-render0_1.17.0-2_amd64.deb ... 232s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 232s Selecting previously unselected package libxcb-shm0:amd64. 232s Preparing to unpack .../12-libxcb-shm0_1.17.0-2_amd64.deb ... 232s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 232s Selecting previously unselected package libxrender1:amd64. 232s Preparing to unpack .../13-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 232s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 232s Selecting previously unselected package libcairo2:amd64. 232s Preparing to unpack .../14-libcairo2_1.18.2-2_amd64.deb ... 232s Unpacking libcairo2:amd64 (1.18.2-2) ... 232s Selecting previously unselected package libdatrie1:amd64. 232s Preparing to unpack .../15-libdatrie1_0.2.13-3build1_amd64.deb ... 232s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 232s Selecting previously unselected package libdeflate0:amd64. 232s Preparing to unpack .../16-libdeflate0_1.23-1_amd64.deb ... 232s Unpacking libdeflate0:amd64 (1.23-1) ... 232s Selecting previously unselected package libfile-copy-link-perl. 232s Preparing to unpack .../17-libfile-copy-link-perl_0.200-1_all.deb ... 232s Unpacking libfile-copy-link-perl (0.200-1) ... 232s Selecting previously unselected package libgfortran5:amd64. 232s Preparing to unpack .../18-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 232s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 232s Selecting previously unselected package libgomp1:amd64. 232s Preparing to unpack .../19-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 232s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 232s Selecting previously unselected package libgraphite2-3:amd64. 232s Preparing to unpack .../20-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 232s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 232s Selecting previously unselected package libharfbuzz0b:amd64. 232s Preparing to unpack .../21-libharfbuzz0b_10.2.0-1_amd64.deb ... 232s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 232s Selecting previously unselected package libhtscodecs2:amd64. 232s Preparing to unpack .../22-libhtscodecs2_1.6.1-2_amd64.deb ... 232s Unpacking libhtscodecs2:amd64 (1.6.1-2) ... 232s Selecting previously unselected package libhts3t64:amd64. 232s Preparing to unpack .../23-libhts3t64_1.21+ds-1_amd64.deb ... 232s Unpacking libhts3t64:amd64 (1.21+ds-1) ... 232s Selecting previously unselected package x11-common. 232s Preparing to unpack .../24-x11-common_1%3a7.7+23ubuntu3_all.deb ... 232s Unpacking x11-common (1:7.7+23ubuntu3) ... 232s Selecting previously unselected package libice6:amd64. 232s Preparing to unpack .../25-libice6_2%3a1.1.1-1_amd64.deb ... 232s Unpacking libice6:amd64 (2:1.1.1-1) ... 232s Selecting previously unselected package libjpeg-turbo8:amd64. 232s Preparing to unpack .../26-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 232s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 232s Selecting previously unselected package libjpeg8:amd64. 232s Preparing to unpack .../27-libjpeg8_8c-2ubuntu11_amd64.deb ... 232s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 232s Selecting previously unselected package liblapack3:amd64. 232s Preparing to unpack .../28-liblapack3_3.12.1-2_amd64.deb ... 232s Unpacking liblapack3:amd64 (3.12.1-2) ... 232s Selecting previously unselected package liblerc4:amd64. 232s Preparing to unpack .../29-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 232s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 232s Selecting previously unselected package libthai-data. 232s Preparing to unpack .../30-libthai-data_0.1.29-2build1_all.deb ... 232s Unpacking libthai-data (0.1.29-2build1) ... 232s Selecting previously unselected package libthai0:amd64. 232s Preparing to unpack .../31-libthai0_0.1.29-2build1_amd64.deb ... 232s Unpacking libthai0:amd64 (0.1.29-2build1) ... 232s Selecting previously unselected package libpango-1.0-0:amd64. 232s Preparing to unpack .../32-libpango-1.0-0_1.56.2-1_amd64.deb ... 232s Unpacking libpango-1.0-0:amd64 (1.56.2-1) ... 232s Selecting previously unselected package libpangoft2-1.0-0:amd64. 232s Preparing to unpack .../33-libpangoft2-1.0-0_1.56.2-1_amd64.deb ... 232s Unpacking libpangoft2-1.0-0:amd64 (1.56.2-1) ... 232s Selecting previously unselected package libpangocairo-1.0-0:amd64. 232s Preparing to unpack .../34-libpangocairo-1.0-0_1.56.2-1_amd64.deb ... 232s Unpacking libpangocairo-1.0-0:amd64 (1.56.2-1) ... 232s Selecting previously unselected package libpaper2:amd64. 232s Preparing to unpack .../35-libpaper2_2.2.5-0.3_amd64.deb ... 232s Unpacking libpaper2:amd64 (2.2.5-0.3) ... 232s Selecting previously unselected package libpaper-utils. 232s Preparing to unpack .../36-libpaper-utils_2.2.5-0.3_amd64.deb ... 232s Unpacking libpaper-utils (2.2.5-0.3) ... 232s Selecting previously unselected package libsharpyuv0:amd64. 232s Preparing to unpack .../37-libsharpyuv0_1.5.0-0.1_amd64.deb ... 232s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 232s Selecting previously unselected package libsm6:amd64. 232s Preparing to unpack .../38-libsm6_2%3a1.2.4-1_amd64.deb ... 232s Unpacking libsm6:amd64 (2:1.2.4-1) ... 232s Selecting previously unselected package libtabixpp0t64:amd64. 232s Preparing to unpack .../39-libtabixpp0t64_1.1.2-2.1build1_amd64.deb ... 232s Unpacking libtabixpp0t64:amd64 (1.1.2-2.1build1) ... 233s Selecting previously unselected package libtcl8.6:amd64. 233s Preparing to unpack .../40-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 233s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 233s Selecting previously unselected package libjbig0:amd64. 233s Preparing to unpack .../41-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 233s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 233s Selecting previously unselected package libwebp7:amd64. 233s Preparing to unpack .../42-libwebp7_1.5.0-0.1_amd64.deb ... 233s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 233s Selecting previously unselected package libtiff6:amd64. 233s Preparing to unpack .../43-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 233s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 233s Selecting previously unselected package libxft2:amd64. 233s Preparing to unpack .../44-libxft2_2.3.6-1build1_amd64.deb ... 233s Unpacking libxft2:amd64 (2.3.6-1build1) ... 233s Selecting previously unselected package libxss1:amd64. 233s Preparing to unpack .../45-libxss1_1%3a1.2.3-1build3_amd64.deb ... 233s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 233s Selecting previously unselected package libtk8.6:amd64. 233s Preparing to unpack .../46-libtk8.6_8.6.16-1_amd64.deb ... 233s Unpacking libtk8.6:amd64 (8.6.16-1) ... 233s Selecting previously unselected package libxt6t64:amd64. 233s Preparing to unpack .../47-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 233s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 233s Selecting previously unselected package zip. 233s Preparing to unpack .../48-zip_3.0-14ubuntu2_amd64.deb ... 233s Unpacking zip (3.0-14ubuntu2) ... 233s Selecting previously unselected package unzip. 233s Preparing to unpack .../49-unzip_6.0-28ubuntu6_amd64.deb ... 233s Unpacking unzip (6.0-28ubuntu6) ... 233s Selecting previously unselected package xdg-utils. 233s Preparing to unpack .../50-xdg-utils_1.2.1-2ubuntu1_all.deb ... 233s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 233s Selecting previously unselected package r-base-core. 233s Preparing to unpack .../51-r-base-core_4.4.3-1_amd64.deb ... 233s Unpacking r-base-core (4.4.3-1) ... 233s Selecting previously unselected package r-cran-boot. 233s Preparing to unpack .../52-r-cran-boot_1.3-31-1_all.deb ... 233s Unpacking r-cran-boot (1.3-31-1) ... 233s Selecting previously unselected package r-cran-cluster. 233s Preparing to unpack .../53-r-cran-cluster_2.1.8.1-1_amd64.deb ... 233s Unpacking r-cran-cluster (2.1.8.1-1) ... 233s Selecting previously unselected package r-cran-foreign. 233s Preparing to unpack .../54-r-cran-foreign_0.8.88-1_amd64.deb ... 233s Unpacking r-cran-foreign (0.8.88-1) ... 233s Selecting previously unselected package r-cran-mass. 233s Preparing to unpack .../55-r-cran-mass_7.3-64-1_amd64.deb ... 233s Unpacking r-cran-mass (7.3-64-1) ... 233s Selecting previously unselected package r-cran-kernsmooth. 233s Preparing to unpack .../56-r-cran-kernsmooth_2.23-26-1_amd64.deb ... 233s Unpacking r-cran-kernsmooth (2.23-26-1) ... 234s Selecting previously unselected package r-cran-lattice. 234s Preparing to unpack .../57-r-cran-lattice_0.22-6-1_amd64.deb ... 234s Unpacking r-cran-lattice (0.22-6-1) ... 234s Selecting previously unselected package r-cran-nlme. 234s Preparing to unpack .../58-r-cran-nlme_3.1.167-1_amd64.deb ... 234s Unpacking r-cran-nlme (3.1.167-1) ... 234s Selecting previously unselected package r-cran-matrix. 234s Preparing to unpack .../59-r-cran-matrix_1.7-3-1_amd64.deb ... 234s Unpacking r-cran-matrix (1.7-3-1) ... 234s Selecting previously unselected package r-cran-mgcv. 234s Preparing to unpack .../60-r-cran-mgcv_1.9-1-1_amd64.deb ... 234s Unpacking r-cran-mgcv (1.9-1-1) ... 234s Selecting previously unselected package r-cran-survival. 234s Preparing to unpack .../61-r-cran-survival_3.8-3-1_amd64.deb ... 234s Unpacking r-cran-survival (3.8-3-1) ... 234s Selecting previously unselected package r-cran-rpart. 234s Preparing to unpack .../62-r-cran-rpart_4.1.24-1_amd64.deb ... 234s Unpacking r-cran-rpart (4.1.24-1) ... 234s Selecting previously unselected package r-cran-class. 234s Preparing to unpack .../63-r-cran-class_7.3-23-1_amd64.deb ... 234s Unpacking r-cran-class (7.3-23-1) ... 234s Selecting previously unselected package r-cran-nnet. 234s Preparing to unpack .../64-r-cran-nnet_7.3-20-1_amd64.deb ... 234s Unpacking r-cran-nnet (7.3-20-1) ... 234s Selecting previously unselected package r-cran-spatial. 234s Preparing to unpack .../65-r-cran-spatial_7.3-18-1_amd64.deb ... 234s Unpacking r-cran-spatial (7.3-18-1) ... 234s Selecting previously unselected package r-cran-codetools. 234s Preparing to unpack .../66-r-cran-codetools_0.2-20-1_all.deb ... 234s Unpacking r-cran-codetools (0.2-20-1) ... 234s Selecting previously unselected package r-recommended. 234s Preparing to unpack .../67-r-recommended_4.4.3-1_all.deb ... 234s Unpacking r-recommended (4.4.3-1) ... 234s Selecting previously unselected package r-base. 234s Preparing to unpack .../68-r-base_4.4.3-1_all.deb ... 234s Unpacking r-base (4.4.3-1) ... 234s Selecting previously unselected package samtools. 234s Preparing to unpack .../69-samtools_1.21-1_amd64.deb ... 234s Unpacking samtools (1.21-1) ... 234s Selecting previously unselected package smalt. 234s Preparing to unpack .../70-smalt_0.7.6-13_amd64.deb ... 234s Unpacking smalt (0.7.6-13) ... 234s Selecting previously unselected package snpomatic. 234s Preparing to unpack .../71-snpomatic_1.0-7_amd64.deb ... 234s Unpacking snpomatic (1.0-7) ... 234s Selecting previously unselected package tabix. 234s Preparing to unpack .../72-tabix_1.21+ds-1_amd64.deb ... 234s Unpacking tabix (1.21+ds-1) ... 234s Selecting previously unselected package reapr. 234s Preparing to unpack .../73-reapr_1.0.18+dfsg-7_amd64.deb ... 234s Unpacking reapr (1.0.18+dfsg-7) ... 234s Setting up libhtscodecs2:amd64 (1.6.1-2) ... 234s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 234s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 234s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 234s Setting up libfile-copy-link-perl (0.200-1) ... 234s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 234s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 234s Setting up libdatrie1:amd64 (0.2.13-3build1) ... 234s Setting up libxcb-render0:amd64 (1.17.0-2) ... 234s Setting up unzip (6.0-28ubuntu6) ... 234s Setting up x11-common (1:7.7+23ubuntu3) ... 235s Setting up libdeflate0:amd64 (1.23-1) ... 235s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 235s Setting up libgomp1:amd64 (15-20250222-0ubuntu1) ... 235s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 235s Setting up zip (3.0-14ubuntu2) ... 235s Setting up libblas3:amd64 (3.12.1-2) ... 235s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 235s Setting up libjsoncpp26:amd64 (1.9.6-3) ... 235s Setting up libbambamc0:amd64 (0.0.50-6build1) ... 235s Setting up fonts-dejavu-mono (2.37-8) ... 235s Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ... 235s Setting up fonts-dejavu-core (2.37-8) ... 235s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 235s Setting up libbamtools2.5.2:amd64 (2.5.2+dfsg-6build1) ... 235s Setting up libgfortran5:amd64 (15-20250222-0ubuntu1) ... 235s Setting up libwebp7:amd64 (1.5.0-0.1) ... 235s Setting up bamtools (2.5.2+dfsg-6build1) ... 235s Setting up snpomatic (1.0-7) ... 235s Setting up libhts3t64:amd64 (1.21+ds-1) ... 235s Setting up libharfbuzz0b:amd64 (10.2.0-1) ... 235s Setting up libthai-data (0.1.29-2build1) ... 235s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 235s Setting up libpaper2:amd64 (2.2.5-0.3) ... 235s Setting up tabix (1.21+ds-1) ... 235s Setting up xdg-utils (1.2.1-2ubuntu1) ... 235s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 235s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 235s Setting up smalt (0.7.6-13) ... 235s Setting up libice6:amd64 (2:1.1.1-1) ... 235s Setting up liblapack3:amd64 (3.12.1-2) ... 235s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 235s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 235s Setting up libpaper-utils (2.2.5-0.3) ... 235s Setting up samtools (1.21-1) ... 235s Setting up libthai0:amd64 (0.1.29-2build1) ... 235s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 235s Setting up libtabixpp0t64:amd64 (1.1.2-2.1build1) ... 235s Setting up libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 235s Setting up libsm6:amd64 (2:1.2.4-1) ... 235s Setting up fontconfig (2.15.0-2ubuntu1) ... 237s Regenerating fonts cache... done. 237s Setting up libxft2:amd64 (2.3.6-1build1) ... 237s Setting up libtk8.6:amd64 (8.6.16-1) ... 237s Setting up libpango-1.0-0:amd64 (1.56.2-1) ... 237s Setting up libcairo2:amd64 (1.18.2-2) ... 237s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ... 237s Setting up libpangoft2-1.0-0:amd64 (1.56.2-1) ... 237s Setting up libpangocairo-1.0-0:amd64 (1.56.2-1) ... 237s Setting up r-base-core (4.4.3-1) ... 237s Creating config file /etc/R/Renviron with new version 237s Setting up r-cran-lattice (0.22-6-1) ... 237s Setting up r-cran-nlme (3.1.167-1) ... 237s Setting up r-cran-cluster (2.1.8.1-1) ... 237s Setting up r-cran-nnet (7.3-20-1) ... 237s Setting up r-cran-codetools (0.2-20-1) ... 237s Setting up r-cran-boot (1.3-31-1) ... 237s Setting up r-cran-spatial (7.3-18-1) ... 237s Setting up r-cran-mass (7.3-64-1) ... 237s Setting up r-cran-foreign (0.8.88-1) ... 237s Setting up r-cran-matrix (1.7-3-1) ... 237s Setting up r-cran-kernsmooth (2.23-26-1) ... 237s Setting up r-cran-mgcv (1.9-1-1) ... 237s Setting up r-cran-class (7.3-23-1) ... 237s Setting up r-cran-survival (3.8-3-1) ... 237s Setting up r-cran-rpart (4.1.24-1) ... 237s Setting up r-recommended (4.4.3-1) ... 237s Setting up r-base (4.4.3-1) ... 237s Setting up reapr (1.0.18+dfsg-7) ... 237s Processing triggers for man-db (2.13.0-1) ... 239s Processing triggers for install-info (7.1.1-1) ... 239s Processing triggers for libc-bin (2.41-1ubuntu2) ... 240s autopkgtest [22:49:58]: test test-example: [----------------------- 240s [wgsim] seed = 42 240s [wgsim_core] calculating the total length of the reference sequence... 240s [wgsim_core] 1 sequences, total length: 1000111 241s foo 1384 T K + 241s foo 4961 T W + 241s foo 5885 - T - 241s foo 9598 A C - 241s foo 10177 G R + 241s foo 11305 G K + 241s foo 11592 G R + 241s foo 13931 T - - 241s foo 15907 C A - 241s foo 17264 G K + 241s foo 17780 A - - 241s foo 18711 A W + 241s foo 19249 T W + 241s foo 19522 C S + 241s foo 23053 T K + 241s foo 23681 A R + 241s foo 23730 C S + 241s foo 24075 G S + 241s foo 24555 G C - 241s foo 26775 G K + 241s foo 26896 C M + 241s foo 27253 G K + 241s foo 28210 T Y + 241s foo 28224 A W + 241s foo 28377 - G + 241s foo 29035 G K + 241s foo 29898 C M + 241s foo 30274 A R + 241s foo 30542 G K + 241s foo 31566 A C - 241s foo 32252 - A - 241s foo 33303 T K + 241s foo 33390 - G + 241s foo 34073 A R + 241s foo 34171 G R + 241s foo 34718 T Y + 241s foo 34801 - C + 241s foo 35204 T W + 241s foo 35342 G S + 241s foo 35489 G T - 241s foo 36153 A M + 241s foo 36273 C S + 241s foo 37356 G T - 241s foo 37596 C S + 241s foo 39308 T - - 241s foo 40333 C G - 241s foo 42295 T K + 241s foo 42372 T Y + 241s foo 44433 C G - 241s foo 44630 - AG + 241s foo 44902 T C - 241s foo 47156 C A - 241s foo 48210 C M + 241s foo 48390 A R + 241s foo 49652 C M + 241s foo 52739 T Y + 241s foo 52858 A M + 241s foo 54737 A G - 241s foo 55306 C T - 241s foo 55434 C T - 241s foo 59204 A W + 241s foo 59300 G C - 241s foo 59335 T Y + 241s foo 59444 T - - 241s foo 59531 C S + 241s foo 59766 C Y + 241s foo 61950 C S + 241s foo 62887 G S + 241s foo 63390 A G - 241s foo 64365 G K + 241s foo 64703 C S + 241s foo 64932 C Y + 241s foo 68383 - CG + 241s foo 68464 A W + 241s foo 68727 A W + 241s foo 69080 A M + 241s foo 72071 T C - 241s foo 72720 - G - 241s foo 73354 C T - 241s foo 73637 G T - 241s foo 74741 A M + 241s foo 75101 C T - 241s foo 75207 T K + 241s foo 76400 T Y + 241s foo 76780 A C - 241s foo 77172 A W + 241s foo 78385 C Y + 241s foo 80705 C M + 241s foo 82440 A R + 241s foo 83021 G K + 241s foo 83116 A - - 241s foo 83846 T K + 241s foo 84633 G S + 241s foo 85891 G S + 241s foo 87759 A C - 241s foo 87778 T W + 241s foo 88581 T K + 241s foo 88606 T Y + 241s foo 88880 A G - 241s foo 89945 G C - 241s foo 90728 T K + 241s foo 91798 G R + 241s foo 95957 G C - 241s foo 96173 T W + 241s foo 96665 A M + 241s foo 98019 - G + 241s foo 98131 A M + 241s foo 98669 A R + 241s foo 98719 G T - 241s foo 99062 A W + 241s foo 99590 A T - 241s foo 100532 - TC + 241s foo 103015 A W + 241s foo 103172 G S + 241s foo 103609 G R + 241s foo 106549 T Y + 241s foo 108808 C Y + 241s foo 109191 G C - 241s foo 111686 C G - 241s foo 113436 C A - 241s foo 113763 A W + 241s foo 115671 C T - 241s foo 117460 - A - 241s foo 118193 G - - 241s foo 118585 T K + 241s foo 121219 A M + 241s foo 121876 T K + 241s foo 122071 T A - 241s foo 124918 C G - 241s foo 125300 G S + 241s foo 125967 C S + 241s foo 127443 G S + 241s foo 127565 C Y + 241s foo 128700 C A - 241s foo 129912 G A - 241s foo 130847 T W + 241s foo 131677 G S + 241s foo 132189 T C - 241s foo 135878 CGGC - - 241s foo 136825 T K + 241s foo 138881 TGT - - 241s foo 139288 A W + 241s foo 141054 A W + 241s foo 141055 - T + 241s foo 141101 C S + 241s foo 141404 A R + 241s foo 142698 T C - 241s foo 143990 C A - 241s foo 144167 T Y + 241s foo 144814 C Y + 241s foo 146381 T Y + 241s foo 146393 C A - 241s foo 146510 A C - 241s foo 147182 A W + 241s foo 148783 T C - 241s foo 149068 G S + 241s foo 150208 T K + 241s foo 151554 T W + 241s foo 151709 C G - 241s foo 153072 G R + 241s foo 153307 T Y + 241s foo 154050 G S + 241s foo 154415 C S + 241s foo 154594 G R + 241s foo 155839 G T - 241s foo 156106 G A - 241s foo 159356 T W + 241s foo 159926 A W + 241s foo 160303 T K + 241s foo 161323 C Y + 241s foo 161904 G S + 241s foo 162533 - ACC - 241s foo 164738 C G - 241s foo 165413 A R + 241s foo 166944 C M + 241s foo 167464 T Y + 241s foo 168420 T C - 241s foo 168579 A M + 241s foo 168787 T W + 241s foo 168959 A T - 241s foo 169884 G S + 241s foo 170032 G T - 241s foo 172058 G K + 241s foo 174942 A R + 241s foo 175014 G K + 241s foo 178406 G A - 241s foo 179028 - A + 241s foo 182394 C M + 241s foo 182735 T Y + 241s foo 183384 T K + 241s foo 183893 - AT - 241s foo 185360 G A - 241s foo 185538 - G - 241s foo 187948 G S + 241s foo 188120 T G - 241s foo 188179 T W + 241s foo 188316 T Y + 241s foo 189963 - G + 241s foo 190093 C Y + 241s foo 192220 C M + 241s foo 192368 A W + 241s foo 192782 T K + 241s foo 193307 A R + 241s foo 193501 G K + 241s foo 194276 G S + 241s foo 194930 C S + 241s foo 196728 A W + 241s foo 197559 G C - 241s foo 198467 T W + 241s foo 199042 C Y + 241s foo 199259 AA - - 241s foo 199687 TT - - 241s foo 200287 C A - 241s foo 200678 A R + 241s foo 201208 C T - 241s foo 201882 A - - 241s foo 204456 T K + 241s foo 206327 G R + 241s foo 207311 G T - 241s foo 209184 G A - 241s foo 209279 C Y + 241s foo 211459 C Y + 241s foo 213807 T Y + 241s foo 213846 T Y + 241s foo 214635 A G - 241s foo 214884 C A - 241s foo 216244 A M + 241s foo 216652 A M + 241s foo 216745 T - - 241s foo 216909 A T - 241s foo 217579 A G - 241s foo 217895 C Y + 241s foo 218870 G K + 241s foo 223098 T A - 241s foo 223283 - C + 241s foo 223666 C A - 241s foo 224011 - C + 241s foo 225681 C S + 241s foo 227345 T C - 241s foo 228778 T G - 241s foo 229926 C - - 241s foo 230778 T K + 241s foo 230939 CG - - 241s foo 231988 CT - - 241s foo 234593 T W + 241s foo 235496 C S + 241s foo 235705 G K + 241s foo 235758 A G - 241s foo 236852 T C - 241s foo 238790 A M + 241s foo 238865 T K + 241s foo 239329 A M + 241s foo 239576 - C + 241s foo 243058 G S + 241s foo 244147 T - - 241s foo 244462 C G - 241s foo 245443 - A + 241s foo 246544 C Y + 241s foo 246744 T W + 241s foo 247473 C M + 241s foo 248129 C T - 241s foo 249060 A C - 241s foo 249515 G T - 241s foo 250138 G S + 241s foo 250567 C A - 241s foo 254381 G R + 241s foo 257864 C M + 241s foo 257879 C Y + 241s foo 259859 A M + 241s foo 260643 C S + 241s foo 261681 C G - 241s foo 262645 T Y + 241s foo 263279 A R + 241s foo 263575 A - - 241s foo 264587 - TA + 241s foo 264689 T K + 241s foo 265758 G K + 241s foo 266272 A M + 241s foo 268550 C M + 241s foo 269986 G S + 241s foo 270321 AC - - 241s foo 273346 C S + 241s foo 275367 C A - 241s foo 277334 C G - 241s foo 277629 G T - 241s foo 278431 C Y + 241s foo 281456 T Y + 241s foo 281556 T G - 241s foo 281737 G K + 241s foo 282290 AC - - 241s foo 282851 - C - 241s foo 284405 A C - 241s foo 288751 A C - 241s foo 290501 TAAA - - 241s foo 291315 A W + 241s foo 291368 C - - 241s foo 292154 A C - 241s foo 292385 C M + 241s foo 292555 G K + 241s foo 297709 G C - 241s foo 298183 A W + 241s foo 298228 T W + 241s foo 299902 T G - 241s foo 302575 A T - 241s foo 304823 G R + 241s foo 305308 T Y + 241s foo 305487 G S + 241s foo 305697 G T - 241s foo 306098 C G - 241s foo 306882 T Y + 241s foo 308201 A M + 241s foo 308833 A T - 241s foo 312033 A - - 241s foo 312895 C G - 241s foo 313889 C - - 241s foo 315109 A R + 241s foo 316083 C - - 241s foo 316466 A R + 241s foo 318040 G C - 241s foo 319446 T C - 241s foo 320236 C S + 241s foo 320652 A - - 241s foo 320716 T K + 241s foo 323644 A - - 241s foo 325359 G T - 241s foo 329476 - CA + 241s foo 329706 T G - 241s foo 330181 T Y + 241s foo 330703 C Y + 241s foo 331315 G S + 241s foo 332351 C A - 241s foo 333408 A R + 241s foo 333468 C S + 241s foo 336247 A G - 241s foo 336586 A M + 241s foo 337364 G K + 241s foo 337686 A T - 241s foo 338043 A - - 241s foo 338292 C G - 241s foo 338962 A C - 241s foo 339353 G K + 241s foo 340647 - A + 241s foo 341705 G R + 241s foo 344283 C M + 241s foo 345898 - AG - 241s foo 347959 T - - 241s foo 349162 C M + 241s foo 352072 T Y + 241s foo 354614 C Y + 241s foo 359304 T - - 241s foo 359312 - G + 241s foo 360972 C S + 241s foo 363857 C Y + 241s foo 366226 A C - 241s foo 367259 C M + 241s foo 372502 T Y + 241s foo 372747 A M + 241s foo 375140 C S + 241s foo 376298 T W + 241s foo 376313 C - - 241s foo 376760 T W + 241s foo 378494 A W + 241s foo 381137 T G - 241s foo 381186 A R + 241s foo 381701 A G - 241s foo 382614 A W + 241s foo 382761 C T - 241s foo 382854 T C - 241s foo 383201 C T - 241s foo 385104 G S + 241s foo 385233 - A + 241s foo 386138 C T - 241s foo 386316 A W + 241s foo 387072 A R + 241s foo 387642 - A + 241s foo 388232 T C - 241s foo 388890 GGG - - 241s foo 390508 C S + 241s foo 390625 C M + 241s foo 391921 C G - 241s foo 395256 G T - 241s foo 395542 G S + 241s foo 397015 A - - 241s foo 397516 C Y + 241s foo 397528 GC - - 241s foo 398152 C T - 241s foo 399802 A W + 241s foo 400972 T K + 241s foo 401419 - T + 241s foo 401477 T W + 241s foo 402437 A M + 241s foo 402722 G R + 241s foo 403452 C M + 241s foo 404234 - A + 241s foo 405344 A W + 241s foo 407040 G S + 241s foo 408483 G R + 241s foo 408586 A C - 241s foo 408721 A R + 241s foo 409494 A M + 241s foo 410078 A G - 241s foo 411170 C A - 241s foo 415342 T Y + 241s foo 416265 C G - 241s foo 417740 C A - 241s foo 418622 C S + 241s foo 420232 A W + 241s foo 420288 T Y + 241s foo 420908 A W + 241s foo 421109 T A - 241s foo 421357 A R + 241s foo 422799 G A - 241s foo 424383 C S + 241s foo 424871 - GCA + 241s foo 427273 T A - 241s foo 429822 C M + 241s foo 429846 T W + 241s foo 432015 A G - 241s foo 432414 G K + 241s foo 433606 C Y + 241s foo 433831 T Y + 241s foo 437721 - A - 241s foo 438402 G - - 241s foo 438799 A T - 241s foo 439422 C M + 241s foo 440734 C A - 241s foo 441840 T G - 241s foo 442021 - C + 241s foo 445021 T A - 241s foo 445591 G A - 241s foo 446138 T W + 241s foo 447757 A W + 241s foo 449156 T - - 241s foo 449161 G K + 241s foo 450114 A W + 241s foo 450688 A W + 241s foo 454421 C G - 241s foo 454718 T Y + 241s foo 455675 TC - - 241s foo 461721 G R + 241s foo 462526 G S + 241s foo 467296 G A - 241s foo 467510 G K + 241s foo 468267 T K + 241s foo 469118 G R + 241s foo 469830 C Y + 241s foo 471073 G T - 241s foo 472056 G A - 241s foo 472773 - A + 241s foo 473046 G R + 241s foo 473188 G A - 241s foo 473742 C - - 241s foo 474789 T A - 241s foo 477763 G R + 241s foo 478246 T W + 241s foo 478975 T G - 241s foo 479038 A R + 241s foo 480275 T Y + 241s foo 480317 G A - 241s foo 481512 T K + 241s foo 482069 G S + 241s foo 482534 A R + 241s foo 483760 C Y + 241s foo 485281 T W + 241s foo 486255 T C - 241s foo 487038 T K + 241s foo 487225 T A - 241s foo 488012 C Y + 241s foo 488795 T C - 241s foo 490241 A R + 241s foo 492595 - CGG + 241s foo 493224 C A - 241s foo 494284 A T - 241s foo 495990 - T - 241s foo 497306 A R + 241s foo 497403 T Y + 241s foo 499569 C Y + 241s foo 499651 T K + 241s foo 503139 T C - 241s foo 504660 A R + 241s foo 508679 C - - 241s foo 513643 G K + 241s foo 515668 CC - - 241s foo 515836 G R + 241s foo 516488 C S + 241s foo 517602 G R + 241s foo 517962 G K + 241s foo 517975 T K + 241s foo 519144 A T - 241s foo 520068 T K + 241s foo 520926 A W + 241s foo 521562 C S + 241s foo 522076 CG - - 241s foo 522838 T Y + 241s foo 523513 - C + 241s foo 523907 - TA + 241s foo 526271 T A - 241s foo 526533 AC - - 241s foo 526767 C Y + 241s foo 528217 C Y + 241s foo 531924 G S + 241s foo 532333 - TT + 241s foo 533132 C M + 241s foo 534689 A T - 241s foo 534779 A W + 241s foo 535594 C A - 241s foo 535795 G R + 241s foo 538368 A R + 241s foo 540879 G K + 241s foo 542530 A - - 241s foo 543620 G R + 241s foo 544733 - C - 241s foo 546300 - TT + 241s foo 548196 A T - 241s foo 548878 C M + 241s foo 548885 G R + 241s foo 549459 T K + 241s foo 550908 A G - 241s foo 551170 A - - 241s foo 553130 T Y + 241s foo 555293 T G - 241s foo 556198 G R + 241s foo 556355 A T - 241s foo 557688 G K + 241s foo 558415 G C - 241s foo 558461 - G + 241s foo 559287 T Y + 241s foo 559465 C M + 241s foo 560184 T W + 241s foo 560252 T W + 241s foo 562579 A M + 241s foo 562961 G A - 241s foo 566986 C A - 241s foo 568134 C A - 241s foo 569698 T C - 241s foo 570180 T K + 241s foo 570451 TG - - 241s foo 570832 - A - 241s foo 571589 A W + 241s foo 572208 C M + 241s foo 572871 C S + 241s foo 574334 G - - 241s foo 575673 T Y + 241s foo 576797 G S + 241s foo 578486 - C - 241s foo 578494 C S + 241s foo 579257 G A - 241s foo 580103 G T - 241s foo 580872 A W + 241s foo 580925 G S + 241s foo 580950 G C - 241s foo 581637 T Y + 241s foo 581654 A G - 241s foo 582538 A T - 241s foo 582691 C M + 241s foo 582938 A W + 241s foo 583104 T K + 241s foo 584763 T W + 241s foo 585723 T W + 241s foo 588253 T Y + 241s foo 588972 T C - 241s foo 589438 - C - 241s foo 591131 C Y + 241s foo 591950 G R + 241s foo 592194 T G - 241s foo 592310 G S + 241s foo 593892 G A - 241s foo 598556 A - - 241s foo 601660 G S + 241s foo 602112 G T - 241s foo 602412 T Y + 241s foo 607282 - C + 241s foo 607394 A M + 241s foo 608438 A T - 241s foo 609255 A W + 241s foo 609365 - T + 241s foo 611161 G K + 241s foo 612224 C G - 241s foo 614493 G R + 241s foo 614601 G A - 241s foo 614607 C Y + 241s foo 619507 C M + 241s foo 619798 T C - 241s foo 621872 C T - 241s foo 622375 C Y + 241s foo 623208 - G - 241s foo 624366 C A - 241s foo 625320 - ACA - 241s foo 626664 - G + 241s foo 627140 T C - 241s foo 627353 G T - 241s foo 628714 T Y + 241s foo 628744 A - - 241s foo 629152 A G - 241s foo 630110 T G - 241s foo 631744 G K + 241s foo 632763 C S + 241s foo 634419 G - - 241s foo 634459 A G - 241s foo 634571 G A - 241s foo 635366 - A + 241s foo 635604 G T - 241s foo 637057 T C - 241s foo 637525 A T - 241s foo 638412 A R + 241s foo 640547 A W + 241s foo 641514 T K + 241s foo 642219 A R + 241s foo 642427 A G - 241s foo 642612 A R + 241s foo 643553 T W + 241s foo 647316 - T + 241s foo 647598 C - - 241s foo 651093 G A - 241s foo 651718 G R + 241s foo 652235 A G - 241s foo 652579 A C - 241s foo 653355 A W + 241s foo 655174 C M + 241s foo 655487 A M + 241s foo 656849 G S + 241s foo 661081 T K + 241s foo 661134 G C - 241s foo 661935 A W + 241s foo 662010 A M + 241s foo 662040 G R + 241s foo 663030 A W + 241s foo 663268 - C + 241s foo 664991 T - - 241s foo 665489 T K + 241s foo 665555 C M + 241s foo 665965 C Y + 241s foo 668725 A C - 241s foo 668834 - G - 241s foo 668873 C S + 241s foo 669654 T W + 241s foo 671041 G S + 241s foo 671485 T W + 241s foo 671690 C M + 241s foo 673022 G R + 241s foo 674137 - T + 241s foo 674782 A C - 241s foo 676373 G T - 241s foo 676793 T C - 241s foo 677409 G S + 241s foo 677536 - AA - 241s foo 677620 G K + 241s foo 677686 C Y + 241s foo 678327 G S + 241s foo 678704 G S + 241s foo 678771 A C - 241s foo 678866 C T - 241s foo 679960 A W + 241s foo 680447 - C + 241s foo 682102 C T - 241s foo 685497 T A - 241s foo 686884 G S + 241s foo 687324 ACA - - 241s foo 687684 - AC + 241s foo 687823 T C - 241s foo 688590 G K + 241s foo 690802 C M + 241s foo 691388 T C - 241s foo 691403 T G - 241s foo 691790 G A - 241s foo 692973 C A - 241s foo 694058 G S + 241s foo 694550 G R + 241s foo 694968 T W + 241s foo 695898 A T - 241s foo 696721 C S + 241s foo 696787 C S + 241s foo 696935 A M + 241s foo 698024 - C + 241s foo 699813 A - - 241s foo 700179 G R + 241s foo 701421 A M + 241s foo 701989 T A - 241s foo 702862 C A - 241s foo 707020 G A - 241s foo 708420 A - - 241s foo 708669 C G - 241s foo 710521 T W + 241s foo 711801 G C - 241s foo 711913 T G - 241s foo 715830 C M + 241s foo 717664 TC - - 241s foo 718845 A W + 241s foo 719069 T Y + 241s foo 719565 A W + 241s foo 721136 T K + 241s foo 726116 T K + 241s foo 727809 T K + 241s foo 728864 G K + 241s foo 728918 G A - 241s foo 730296 - T + 241s foo 731988 C Y + 241s foo 734658 A M + 241s foo 734715 A W + 241s foo 736618 C G - 241s foo 737257 T Y + 241s foo 740864 C A - 241s foo 741640 G - - 241s foo 741859 - TA - 241s foo 742011 T K + 241s foo 742237 A R + 241s foo 742960 G K + 241s foo 743731 G R + 241s foo 743971 A W + 241s foo 744635 T K + 241s foo 746430 C G - 241s foo 746489 - GC - 241s foo 746881 C M + 241s foo 756997 TC - - 241s foo 757776 A M + 241s foo 759870 A T - 241s foo 760224 G K + 241s foo 760799 G C - 241s foo 761692 T C - 241s foo 762569 G S + 241s foo 763140 A G - 241s foo 763842 - T - 241s foo 764192 A M + 241s foo 764334 G A - 241s foo 764889 - AAT + 241s foo 766464 G S + 241s foo 768226 G A - 241s foo 770272 T G - 241s foo 771145 C Y + 241s foo 772209 T A - 241s foo 773672 T K + 241s foo 773932 G C - 241s foo 774658 C S + 241s foo 775969 A M + 241s foo 776816 T G - 241s foo 777591 C Y + 241s foo 777891 A M + 241s foo 778164 C M + 241s foo 778219 T W + 241s foo 779260 G T - 241s foo 779465 A W + 241s foo 779779 G S + 241s foo 780033 G K + 241s foo 783243 C M + 241s foo 783860 A R + 241s foo 788345 A M + 241s foo 789554 G - - 241s foo 790025 G K + 241s foo 791454 T K + 241s foo 792009 C A - 241s foo 792872 C G - 241s foo 794616 T W + 241s foo 795031 G R + 241s foo 796919 C M + 241s foo 797020 G S + 241s foo 797042 G C - 241s foo 797149 G A - 241s foo 797177 A C - 241s foo 799076 G C - 241s foo 799580 G S + 241s foo 800356 A R + 241s foo 802297 G T - 241s foo 802309 T Y + 241s foo 802343 - C + 241s foo 802769 A W + 241s foo 803104 C G - 241s foo 805819 C Y + 241s foo 805972 T Y + 241s foo 807503 T K + 241s foo 807950 C M + 241s foo 807994 - A - 241s foo 809167 A G - 241s foo 809658 A W + 241s foo 810152 A M + 241s foo 811506 G R + 241s foo 813494 A M + 241s foo 814035 G T - 241s foo 814476 A W + 241s foo 819399 T K + 241s foo 820171 T W + 241s foo 820445 G C - 241s foo 822178 C G - 241s foo 822504 C T - 241s foo 823378 C M + 241s foo 823591 CG - - 241s foo 824229 C M + 241s foo 824579 C T - 241s foo 824858 C M + 241s foo 826101 T K + 241s foo 827593 C G - 241s foo 827794 T Y + 241s foo 828228 A M + 241s foo 828367 T K + 241s foo 828788 C M + 241s foo 829002 C Y + 241s foo 830345 C M + 241s foo 831018 C A - 241s foo 831459 T K + 241s foo 832413 A T - 241s foo 832782 T Y + 241s foo 832908 T Y + 241s foo 833130 T - - 241s foo 833142 G S + 241s foo 833241 G A - 241s foo 836727 A T - 241s foo 836829 G S + 241s foo 838452 T G - 241s foo 838543 A T - 241s foo 838605 C M + 241s foo 838954 G C - 241s foo 841829 G K + 241s foo 842324 - TC + 241s foo 842996 - C + 241s foo 844390 C A - 241s foo 844793 A C - 241s foo 844925 C A - 241s foo 845082 G C - 241s foo 846202 G R + 241s foo 846707 A G - 241s foo 848713 G A - 241s foo 849372 C S + 241s foo 849742 G A - 241s foo 850499 C - - 241s foo 850927 GT - - 241s foo 851084 - G + 241s foo 852247 A R + 241s foo 852972 C A - 241s foo 854808 T W + 241s foo 855956 G K + 241s foo 856225 G A - 241s foo 856582 T K + 241s foo 857351 C M + 241s foo 857504 AC - - 241s foo 858324 A T - 241s foo 858858 T C - 241s foo 859488 T Y + 241s foo 862441 T Y + 241s foo 863827 C Y + 241s foo 864165 C A - 241s foo 865997 C M + 241s foo 866370 G S + 241s foo 867653 G S + 241s foo 867722 C Y + 241s foo 868696 C M + 241s foo 869005 T W + 241s foo 869791 T Y + 241s foo 875339 C Y + 241s foo 875347 C M + 241s foo 875584 T G - 241s foo 876780 C T - 241s foo 878368 A C - 241s foo 878916 - CAG + 241s foo 879005 A R + 241s foo 880112 G T - 241s foo 881021 - T - 241s foo 881175 T W + 241s foo 882168 - GGG + 241s foo 882223 - G - 241s foo 883033 TG - - 241s foo 883381 C G - 241s foo 884378 C - - 241s foo 885075 A M + 241s foo 885190 A W + 241s foo 885568 A W + 241s foo 885827 T Y + 241s foo 887610 TG - - 241s foo 889139 G R + 241s foo 890978 T - - 241s foo 891500 C Y + 241s foo 892257 G C - 241s foo 892642 G R + 241s foo 892644 T W + 241s foo 892757 C A - 241s foo 893222 T - - 241s foo 893348 T W + 241s foo 894161 - C - 241s foo 894447 A G - 241s foo 894614 A W + 241s foo 897817 T W + 241s foo 899408 C S + 241s foo 902450 A T - 241s foo 902970 AT - - 241s foo 905836 G K + 241s foo 906524 GA - - 241s foo 907484 A W + 241s foo 907537 C M + 241s foo 908515 G R + 241s foo 908642 C T - 241s foo 911145 T C - 241s foo 912220 T Y + 241s foo 912682 C Y + 241s foo 914260 C S + 241s foo 914757 T Y + 241s foo 916413 G C - 241s foo 916783 T G - 241s foo 917033 G C - 241s foo 917218 A - - 241s foo 918225 G - - 241s foo 918459 A - - 241s foo 918732 A M + 241s foo 919640 TC - - 241s foo 920824 T W + 241s foo 920836 G C - 241s foo 924560 G R + 241s foo 924659 GA - - 241s foo 925868 T A - 241s foo 928254 T G - 241s foo 928369 - A - 241s foo 928641 - AG + 241s foo 929857 C M + 241s foo 930211 T W + 241s foo 930935 C T - 241s foo 931986 A M + 241s foo 932852 G T - 241s foo 933965 T A - 241s foo 935564 A W + 241s foo 936034 T Y + 241s foo 936221 AC - - 241s foo 936670 C S + 241s foo 936704 T A - 241s foo 936786 T W + 241s foo 939218 C S + 241s foo 939312 A W + 241s foo 939467 A W + 241s foo 939934 C S + 241s foo 941603 C Y + 241s foo 942910 A W + 241s foo 944654 T Y + 241s foo 945301 A C - 241s foo 945770 C T - 241s foo 946078 G S + 241s foo 948833 G K + 241s foo 948999 A W + 241s foo 949193 A R + 241s foo 950276 C M + 241s foo 950414 A W + 241s foo 951285 G C - 241s foo 953158 G R + 241s foo 953287 A W + 241s foo 954150 C G - 241s foo 954258 G - - 241s foo 955396 CC - - 241s foo 956490 - AC + 241s foo 958129 A R + 241s foo 959027 T A - 241s foo 959964 A W + 241s foo 962042 A G - 241s foo 962742 C G - 241s foo 963306 T W + 241s foo 963422 G K + 241s foo 964082 G S + 241s foo 965561 C S + 241s foo 966531 T K + 241s foo 967324 T W + 241s foo 968419 - C - 241s foo 969054 G - - 241s foo 969158 G S + 241s foo 972658 C M + 241s foo 974266 T W + 241s foo 974629 G K + 241s foo 975034 A R + 241s foo 975636 T W + 241s foo 977078 - A - 241s foo 978321 G T - 241s foo 978595 C G - 241s foo 979090 C M + 241s foo 983855 TA - - 241s foo 985725 T A - 241s foo 988497 C Y + 241s foo 990171 C M + 241s foo 990804 - CA - 241s foo 990941 T W + 241s foo 991797 A W + 241s foo 992469 A M + 241s foo 994610 C Y + 241s foo 998107 - T + 241s foo 999725 G R + 241s [REAPR smaltmap] Running: smalt index -k 13 -s 2 out.bam.tmp.2530.smaltmap.smalt_index foo1.fasta 241s # Command line: smalt index -k 13 -s 2 out.bam.tmp.2530.smaltmap.smalt_index foo1.fasta 241s # Reading sequences ... 241s # Writing sequence set ... 241s # Setting up hash index with collisions ... 241s # word length = 13 bases, skip step = 2 bases ... 241s # number of bits for key = 18 with 0 perfect bits 241s # Counting keys ... 241s # Counting k-tuples ... 241s # Allocating k-tuple arrays ... 241s # Counting k-tuple occurrences ... 241s # Setting the k-tuple positions in index ... 241s # Hash table is set up. 241s # =-=-=-=-= Hash Index Stats =-=-=-=-= 241s # Hash index with collisions. 241s # Word length: 13 bases 241s # Skip step: 2 bases 241s # Number of hash keys: 262144 241s # Number of word positions: 499970 241s # Number of different words: 498076 241s # Maximum number of words per key: 11 241s # Number of keys without words: 39377 241s # =-=-= End of Hash Index Stats =-=-= 241s # Writing table to file ... 241s [REAPR smaltmap] Running: smalt sample -u 1000 -o out.bam.tmp.2530.smaltmap.smalt_sample out.bam.tmp.2530.smaltmap.smalt_index foofq.1.fastq foofq.2.fastq 241s # smalt: Total elapsed wall clock time: 0 seconds 241s # Command line: smalt sample -u 1000 -o out.bam.tmp.2530.smaltmap.smalt_sample out.bam.tmp.2530.smaltmap.smalt_index foofq.1.fastq foofq.2.fastq 241s # Opening read files ... 241s # Reading reference sequences ... 241s # Reading hash table ... 241s # =-=-=-=-= Hash Index Stats =-=-=-=-= 241s # Hash index with collisions. 241s # Word length: 13 bases 241s # Skip step: 2 bases 241s # Number of hash keys: 262144 241s # Number of word positions: 499970 241s # Number of different words: 498076 241s # Maximum number of words per key: 11 241s # Number of keys without words: 39377 241s # =-=-= End of Hash Index Stats =-=-= 241s # Check of read pairs ok ... 241s # Mate names match ... 241s # Sampling insert size distribution ... 242s [REAPR smaltmap] Running: smalt map -r 0 -x -y 0.5 -g out.bam.tmp.2530.smaltmap.smalt_sample -f samsoft out.bam.tmp.2530.smaltmap.smalt_index foofq.1.fastq foofq.2.fastq | awk '$1!~/^#/' | samtools view -S -T foo1.fasta -b - > out.bam.tmp.2530.smaltmap.raw.bam 242s # Processed 9999 read pairs. 242s # smalt: Time spent setting up hash index:0 seconds 242s # smalt: Time spent mapping reads:1 seconds 242s # smalt: Total elapsed wall clock time: 1 seconds 242s # Command line: smalt map -r 0 -x -y 0.5 -g out.bam.tmp.2530.smaltmap.smalt_sample -f samsoft out.bam.tmp.2530.smaltmap.smalt_index foofq.1.fastq foofq.2.fastq 242s # Reading distribution of insert sizes from file ... 242s # Sampled histogram 242s # Smoothed histogram 242s # Opening read files ... 242s # Reading reference sequences ... 242s # Reading hash table ... 242s # =-=-=-=-= Hash Index Stats =-=-=-=-= 242s # Hash index with collisions. 242s # Word length: 13 bases 242s # Skip step: 2 bases 242s # Number of hash keys: 262144 242s # Number of word positions: 499970 242s # Number of different words: 498076 242s # Maximum number of words per key: 11 242s # Number of keys without words: 39377 242s # =-=-= End of Hash Index Stats =-=-= 242s # Processing query reads ... 253s # Processed 10000 read pairs. 253s # smalt: Time spent setting up hash index:0 seconds 253s # smalt: Time spent mapping reads:11 seconds 253s # smalt: Total elapsed wall clock time: 11 seconds 253s [REAPR smaltmap] Running: samtools sort out.bam.tmp.2530.smaltmap.raw.bam -O bam -o out.bam.tmp.2530.smaltmap.raw.bam.sort.bam 253s [REAPR smaltmap] Running: samtools rmdup out.bam.tmp.2530.smaltmap.raw.bam.sort.bam out.bam.tmp.2530.smaltmap.rmdup.bam 253s [bam_rmdup_core] processing reference foo... 254s [bam_rmdup_core] 1 / 10000 = 0.0001 in library ' ' 254s [REAPR smaltmap] Running: echo "@HD VN:1.0 SO:coordinate" | awk '{OFS="\t"; $1=$1; print}' > out.bam.tmp.2530.smaltmap.header 254s [REAPR smaltmap] Running: samtools view -H out.bam.tmp.2530.smaltmap.rmdup.bam >> out.bam.tmp.2530.smaltmap.header 254s [REAPR smaltmap] Running: samtools reheader out.bam.tmp.2530.smaltmap.header out.bam.tmp.2530.smaltmap.rmdup.bam > out.bam 254s [REAPR smaltmap] Running: samtools index out.bam 254s [REAPR smaltmap] Running: rm out.bam.tmp.2530.smaltmap.* 254s Running reapr version 1.0.18 pipeline: 254s reapr foo1.fasta out.bam result 254s [REAPR pipeline] Running facheck 254s [REAPR pipeline] Running preprocess 255s [REAPR preprocess] sampling region foo:1169-3476. Already sampled 0 bases 255s [REAPR preprocess] sampling region foo:3492-5726. Already sampled 2308 bases 255s [REAPR preprocess] sampling region foo:5756-12551. Already sampled 4543 bases 255s [REAPR preprocess] sampling region foo:12591-998105. Already sampled 11339 bases 256s [REAPR preprocess] Sampled 996854 bases for GC/coverage estimation 259s [REAPR pipeline] Running stats 271s [REAPR pipeline] Running fcdrate 273s [REAPR pipeline] Running score 277s [REAPR pipeline] Running break 277s [REAPR pipeline] Running summary 278s autopkgtest [22:50:36]: test test-example: -----------------------] 278s test-example PASS 278s autopkgtest [22:50:36]: test test-example: - - - - - - - - - - results - - - - - - - - - - 278s autopkgtest [22:50:36]: @@@@@@@@@@@@@@@@@@@@ summary 278s test-example PASS 296s nova [W] Skipping flock for amd64 296s Creating nova instance adt-plucky-amd64-reapr-20250315-224558-juju-7f2275-prod-proposed-migration-environment-2-260c1e73-a98b-446d-8342-17b77301f851 from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)... 296s nova [W] Timed out waiting for 49132eb9-1d78-48f5-b64e-16372b6ae7a9 to get deleted.