0s autopkgtest [04:30:25]: starting date and time: 2025-01-17 04:30:25+0000 0s autopkgtest [04:30:25]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [04:30:25]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0iwj7zng/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:rdkit,src:adequate,src:apbs,src:binutils,src:boost1.83,src:createrepo-c,src:dotnet8,src:dotnet9,src:dovecot,src:dpdk,src:freeradius,src:gcc-11,src:gcc-14,src:hkl,src:jsonnet,src:libixion,src:liborcus,src:libreoffice,src:libsbml,src:libzstd,src:link-grammar,src:linux-aws,src:linux-azure,src:linux-gcp,src:linux-lowlatency,src:linux-oracle,src:linux-riscv,src:linux,src:mmdebstrap,src:nftables,src:nodejs,src:open-iscsi,src:postfix,src:pyside2,src:python3-defaults,src:squid,src:systemd,src:tdb,src:tzdata,src:vim --apt-upgrade rdkit --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=rdkit/202409.4-1 adequate/0.17.5 apbs/3.4.1-6build2 binutils/2.43.50.20250108-1ubuntu1 boost1.83/1.83.0-4ubuntu2 createrepo-c/0.17.3-6build1 dotnet8/8.0.112-8.0.12-0ubuntu1 dotnet9/9.0.102-9.0.1-0ubuntu1 dovecot/1:2.3.21.1+dfsg1-1ubuntu2 dpdk/24.11.1-1 freeradius/3.2.6+dfsg-3 gcc-11/11.5.0-2ubuntu1 gcc-14/14.2.0-13ubuntu1 hkl/5.1.3-1 jsonnet/0.20.0+ds-2.1 libixion/0.19.0-6build1 liborcus/0.19.2-6build1 libreoffice/4:24.8.4~rc2-0ubuntu4 libsbml/5.20.4+dfsg-0.1 libzstd/1.5.6+dfsg-2 link-grammar/5.12.5~dfsg-1build1 linux-aws/6.11.0-1005.5 linux-azure/6.11.0-1005.5 linux-gcp/6.11.0-1004.4 linux-lowlatency/6.11.0-1005.5 linux-oracle/6.11.0-1007.7 linux-riscv/6.11.0-8.8.1build1 linux/6.11.0-9.9build1 mmdebstrap/1.5.6-2 nftables/1.1.1-1build1 nodejs/20.18.1+dfsg-1ubuntu2 open-iscsi/2.1.10-3ubuntu1 postfix/3.9.1-10 pyside2/5.15.16-3 python3-defaults/3.13.1-1~exp2 squid/6.10-1ubuntu2 systemd/257.1-7ubuntu1 tdb/1.4.12-1build1 tzdata/2024b-6ubuntu1 vim/2:9.1.0967-1ubuntu1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-25.secgroup --name adt-plucky-amd64-rdkit-20250117-043025-juju-7f2275-prod-proposed-migration-environment-15-3642bf6c-6a13-4311-93e7-55259a5d330e --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 193s autopkgtest [04:33:38]: testbed dpkg architecture: amd64 193s autopkgtest [04:33:38]: testbed apt version: 2.9.18 193s autopkgtest [04:33:38]: @@@@@@@@@@@@@@@@@@@@ test bed setup 193s autopkgtest [04:33:38]: testbed release detected to be: None 194s autopkgtest [04:33:39]: updating testbed package index (apt update) 194s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 195s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 195s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 195s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 195s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [170 kB] 195s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.4 kB] 195s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 195s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [913 kB] 195s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [223 kB] 195s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [326 kB] 195s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [40.1 kB] 195s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2408 B] 195s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [1094 kB] 195s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [475 kB] 195s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [26.7 kB] 195s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [7288 B] 195s Fetched 3376 kB in 1s (3477 kB/s) 196s Reading package lists... 197s Reading package lists... 197s Building dependency tree... 197s Reading state information... 197s Calculating upgrade... 197s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 197s Reading package lists... 197s Building dependency tree... 197s Reading state information... 198s 0 upgraded, 0 newly installed, 0 to remove and 36 not upgraded. 198s autopkgtest [04:33:43]: upgrading testbed (apt dist-upgrade and autopurge) 198s Reading package lists... 198s Building dependency tree... 198s Reading state information... 198s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 198s Starting 2 pkgProblemResolver with broken count: 0 198s Done 199s Entering ResolveByKeep 199s 199s The following packages were automatically installed and are no longer required: 199s python3.12 python3.12-minimal 199s Use 'sudo apt autoremove' to remove them. 199s The following NEW packages will be installed: 199s libpython3.13-minimal libpython3.13-stdlib python3.13 python3.13-minimal 199s The following packages have been kept back: 199s libnftables1 nftables 199s The following packages will be upgraded: 199s binutils binutils-common binutils-x86-64-linux-gnu gcc-14-base libatomic1 199s libbinutils libctf-nobfd0 libctf0 libgcc-s1 libgprofng0 libnss-systemd 199s libpam-systemd libpython3-stdlib libsframe1 libstdc++6 libsystemd-shared 199s libsystemd0 libudev1 libzstd1 linux-libc-dev linux-tools-common python3 199s python3-minimal systemd systemd-cryptsetup systemd-resolved systemd-sysv 199s systemd-timesyncd tzdata udev vim-common vim-tiny xxd zstd 199s 34 upgraded, 4 newly installed, 0 to remove and 2 not upgraded. 199s Need to get 26.5 MB of archives. 199s After this operation, 23.4 MB of additional disk space will be used. 199s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.1-2 [881 kB] 200s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.1-2 [2358 kB] 200s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.13.1-1~exp2 [27.6 kB] 200s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.13.1-1~exp2 [23.9 kB] 200s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 tzdata all 2024b-6ubuntu1 [197 kB] 200s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.1-2 [2088 kB] 200s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.1-2 [729 kB] 200s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.13.1-1~exp2 [10.2 kB] 200s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 systemd-timesyncd amd64 257.1-7ubuntu1 [42.0 kB] 200s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 systemd-resolved amd64 257.1-7ubuntu1 [341 kB] 200s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 systemd-cryptsetup amd64 257.1-7ubuntu1 [124 kB] 200s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libsystemd-shared amd64 257.1-7ubuntu1 [2367 kB] 200s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libsystemd0 amd64 257.1-7ubuntu1 [592 kB] 200s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 systemd-sysv amd64 257.1-7ubuntu1 [11.8 kB] 200s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libnss-systemd amd64 257.1-7ubuntu1 [199 kB] 200s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpam-systemd amd64 257.1-7ubuntu1 [301 kB] 200s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 systemd amd64 257.1-7ubuntu1 [3696 kB] 200s Get:18 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 udev amd64 257.1-7ubuntu1 [2116 kB] 200s Get:19 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libudev1 amd64 257.1-7ubuntu1 [213 kB] 200s Get:20 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 gcc-14-base amd64 14.2.0-13ubuntu1 [53.0 kB] 200s Get:21 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libstdc++6 amd64 14.2.0-13ubuntu1 [787 kB] 200s Get:22 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libatomic1 amd64 14.2.0-13ubuntu1 [10.3 kB] 200s Get:23 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgcc-s1 amd64 14.2.0-13ubuntu1 [78.2 kB] 200s Get:24 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libzstd1 amd64 1.5.6+dfsg-2 [369 kB] 200s Get:25 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 vim-tiny amd64 2:9.1.0967-1ubuntu1 [1039 kB] 200s Get:26 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 vim-common all 2:9.1.0967-1ubuntu1 [396 kB] 200s Get:27 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 xxd amd64 2:9.1.0967-1ubuntu1 [68.0 kB] 200s Get:28 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgprofng0 amd64 2.43.50.20250108-1ubuntu1 [884 kB] 200s Get:29 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libctf0 amd64 2.43.50.20250108-1ubuntu1 [96.4 kB] 200s Get:30 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libctf-nobfd0 amd64 2.43.50.20250108-1ubuntu1 [98.6 kB] 200s Get:31 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.43.50.20250108-1ubuntu1 [2521 kB] 200s Get:32 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libbinutils amd64 2.43.50.20250108-1ubuntu1 [584 kB] 200s Get:33 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 binutils amd64 2.43.50.20250108-1ubuntu1 [3280 B] 200s Get:34 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 binutils-common amd64 2.43.50.20250108-1ubuntu1 [245 kB] 200s Get:35 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libsframe1 amd64 2.43.50.20250108-1ubuntu1 [14.6 kB] 200s Get:36 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 linux-libc-dev amd64 6.11.0-9.9 [1667 kB] 200s Get:37 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 linux-tools-common all 6.11.0-9.9 [484 kB] 200s Get:38 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 zstd amd64 1.5.6+dfsg-2 [775 kB] 201s Preconfiguring packages ... 201s Fetched 26.5 MB in 1s (18.9 MB/s) 201s Selecting previously unselected package libpython3.13-minimal:amd64. 201s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 201s Preparing to unpack .../libpython3.13-minimal_3.13.1-2_amd64.deb ... 201s Unpacking libpython3.13-minimal:amd64 (3.13.1-2) ... 201s Selecting previously unselected package python3.13-minimal. 201s Preparing to unpack .../python3.13-minimal_3.13.1-2_amd64.deb ... 201s Unpacking python3.13-minimal (3.13.1-2) ... 201s Setting up libpython3.13-minimal:amd64 (3.13.1-2) ... 201s Setting up python3.13-minimal (3.13.1-2) ... 202s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76144 files and directories currently installed.) 202s Preparing to unpack .../python3-minimal_3.13.1-1~exp2_amd64.deb ... 202s Unpacking python3-minimal (3.13.1-1~exp2) over (3.12.8-1) ... 202s Setting up python3-minimal (3.13.1-1~exp2) ... 202s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76144 files and directories currently installed.) 202s Preparing to unpack .../0-python3_3.13.1-1~exp2_amd64.deb ... 202s Unpacking python3 (3.13.1-1~exp2) over (3.12.8-1) ... 202s Preparing to unpack .../1-tzdata_2024b-6ubuntu1_all.deb ... 202s Unpacking tzdata (2024b-6ubuntu1) over (2024b-4ubuntu1) ... 202s Selecting previously unselected package libpython3.13-stdlib:amd64. 202s Preparing to unpack .../2-libpython3.13-stdlib_3.13.1-2_amd64.deb ... 202s Unpacking libpython3.13-stdlib:amd64 (3.13.1-2) ... 202s Selecting previously unselected package python3.13. 202s Preparing to unpack .../3-python3.13_3.13.1-2_amd64.deb ... 202s Unpacking python3.13 (3.13.1-2) ... 202s Preparing to unpack .../4-libpython3-stdlib_3.13.1-1~exp2_amd64.deb ... 202s Unpacking libpython3-stdlib:amd64 (3.13.1-1~exp2) over (3.12.8-1) ... 202s Preparing to unpack .../5-systemd-timesyncd_257.1-7ubuntu1_amd64.deb ... 202s Unpacking systemd-timesyncd (257.1-7ubuntu1) over (257-2ubuntu1) ... 202s Preparing to unpack .../6-systemd-resolved_257.1-7ubuntu1_amd64.deb ... 202s Unpacking systemd-resolved (257.1-7ubuntu1) over (257-2ubuntu1) ... 202s Preparing to unpack .../7-systemd-cryptsetup_257.1-7ubuntu1_amd64.deb ... 202s Unpacking systemd-cryptsetup (257.1-7ubuntu1) over (257-2ubuntu1) ... 202s Preparing to unpack .../8-libsystemd-shared_257.1-7ubuntu1_amd64.deb ... 202s Unpacking libsystemd-shared:amd64 (257.1-7ubuntu1) over (257-2ubuntu1) ... 202s Preparing to unpack .../9-libsystemd0_257.1-7ubuntu1_amd64.deb ... 202s Unpacking libsystemd0:amd64 (257.1-7ubuntu1) over (257-2ubuntu1) ... 202s Setting up libsystemd0:amd64 (257.1-7ubuntu1) ... 202s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76561 files and directories currently installed.) 202s Preparing to unpack .../0-systemd-sysv_257.1-7ubuntu1_amd64.deb ... 202s Unpacking systemd-sysv (257.1-7ubuntu1) over (257-2ubuntu1) ... 203s Preparing to unpack .../1-libnss-systemd_257.1-7ubuntu1_amd64.deb ... 203s Unpacking libnss-systemd:amd64 (257.1-7ubuntu1) over (257-2ubuntu1) ... 203s Preparing to unpack .../2-libpam-systemd_257.1-7ubuntu1_amd64.deb ... 203s Unpacking libpam-systemd:amd64 (257.1-7ubuntu1) over (257-2ubuntu1) ... 203s Preparing to unpack .../3-systemd_257.1-7ubuntu1_amd64.deb ... 203s Unpacking systemd (257.1-7ubuntu1) over (257-2ubuntu1) ... 203s Preparing to unpack .../4-udev_257.1-7ubuntu1_amd64.deb ... 203s Unpacking udev (257.1-7ubuntu1) over (257-2ubuntu1) ... 203s Preparing to unpack .../5-libudev1_257.1-7ubuntu1_amd64.deb ... 203s Unpacking libudev1:amd64 (257.1-7ubuntu1) over (257-2ubuntu1) ... 203s Setting up libudev1:amd64 (257.1-7ubuntu1) ... 203s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76562 files and directories currently installed.) 203s Preparing to unpack .../gcc-14-base_14.2.0-13ubuntu1_amd64.deb ... 203s Unpacking gcc-14-base:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 203s Setting up gcc-14-base:amd64 (14.2.0-13ubuntu1) ... 203s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76562 files and directories currently installed.) 203s Preparing to unpack .../libstdc++6_14.2.0-13ubuntu1_amd64.deb ... 203s Unpacking libstdc++6:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 203s Setting up libstdc++6:amd64 (14.2.0-13ubuntu1) ... 203s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76562 files and directories currently installed.) 203s Preparing to unpack .../libatomic1_14.2.0-13ubuntu1_amd64.deb ... 203s Unpacking libatomic1:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 203s Preparing to unpack .../libgcc-s1_14.2.0-13ubuntu1_amd64.deb ... 203s Unpacking libgcc-s1:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 203s Setting up libgcc-s1:amd64 (14.2.0-13ubuntu1) ... 203s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76562 files and directories currently installed.) 203s Preparing to unpack .../libzstd1_1.5.6+dfsg-2_amd64.deb ... 203s Unpacking libzstd1:amd64 (1.5.6+dfsg-2) over (1.5.6+dfsg-1) ... 203s Setting up libzstd1:amd64 (1.5.6+dfsg-2) ... 203s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76562 files and directories currently installed.) 203s Preparing to unpack .../00-vim-tiny_2%3a9.1.0967-1ubuntu1_amd64.deb ... 203s Unpacking vim-tiny (2:9.1.0967-1ubuntu1) over (2:9.1.0861-1ubuntu1) ... 203s Preparing to unpack .../01-vim-common_2%3a9.1.0967-1ubuntu1_all.deb ... 203s Unpacking vim-common (2:9.1.0967-1ubuntu1) over (2:9.1.0861-1ubuntu1) ... 203s Preparing to unpack .../02-xxd_2%3a9.1.0967-1ubuntu1_amd64.deb ... 203s Unpacking xxd (2:9.1.0967-1ubuntu1) over (2:9.1.0861-1ubuntu1) ... 203s Preparing to unpack .../03-libgprofng0_2.43.50.20250108-1ubuntu1_amd64.deb ... 203s Unpacking libgprofng0:amd64 (2.43.50.20250108-1ubuntu1) over (2.43.50.20241230-1ubuntu1) ... 204s Preparing to unpack .../04-libctf0_2.43.50.20250108-1ubuntu1_amd64.deb ... 204s Unpacking libctf0:amd64 (2.43.50.20250108-1ubuntu1) over (2.43.50.20241230-1ubuntu1) ... 204s Preparing to unpack .../05-libctf-nobfd0_2.43.50.20250108-1ubuntu1_amd64.deb ... 204s Unpacking libctf-nobfd0:amd64 (2.43.50.20250108-1ubuntu1) over (2.43.50.20241230-1ubuntu1) ... 204s Preparing to unpack .../06-binutils-x86-64-linux-gnu_2.43.50.20250108-1ubuntu1_amd64.deb ... 204s Unpacking binutils-x86-64-linux-gnu (2.43.50.20250108-1ubuntu1) over (2.43.50.20241230-1ubuntu1) ... 204s Preparing to unpack .../07-libbinutils_2.43.50.20250108-1ubuntu1_amd64.deb ... 204s Unpacking libbinutils:amd64 (2.43.50.20250108-1ubuntu1) over (2.43.50.20241230-1ubuntu1) ... 204s Preparing to unpack .../08-binutils_2.43.50.20250108-1ubuntu1_amd64.deb ... 204s Unpacking binutils (2.43.50.20250108-1ubuntu1) over (2.43.50.20241230-1ubuntu1) ... 204s Preparing to unpack .../09-binutils-common_2.43.50.20250108-1ubuntu1_amd64.deb ... 204s Unpacking binutils-common:amd64 (2.43.50.20250108-1ubuntu1) over (2.43.50.20241230-1ubuntu1) ... 204s Preparing to unpack .../10-libsframe1_2.43.50.20250108-1ubuntu1_amd64.deb ... 204s Unpacking libsframe1:amd64 (2.43.50.20250108-1ubuntu1) over (2.43.50.20241230-1ubuntu1) ... 204s Preparing to unpack .../11-linux-libc-dev_6.11.0-9.9_amd64.deb ... 204s Unpacking linux-libc-dev:amd64 (6.11.0-9.9) over (6.11.0-8.8) ... 204s Preparing to unpack .../12-linux-tools-common_6.11.0-9.9_all.deb ... 204s Unpacking linux-tools-common (6.11.0-9.9) over (6.11.0-8.8) ... 204s Preparing to unpack .../13-zstd_1.5.6+dfsg-2_amd64.deb ... 204s Unpacking zstd (1.5.6+dfsg-2) over (1.5.6+dfsg-1) ... 204s Setting up binutils-common:amd64 (2.43.50.20250108-1ubuntu1) ... 204s Installing new version of config file /etc/gprofng.rc ... 204s Setting up linux-libc-dev:amd64 (6.11.0-9.9) ... 204s Setting up libctf-nobfd0:amd64 (2.43.50.20250108-1ubuntu1) ... 204s Setting up xxd (2:9.1.0967-1ubuntu1) ... 204s Setting up libsframe1:amd64 (2.43.50.20250108-1ubuntu1) ... 204s Setting up tzdata (2024b-6ubuntu1) ... 204s 204s Current default time zone: 'Etc/UTC' 204s Local time is now: Fri Jan 17 04:33:49 UTC 2025. 204s Universal Time is now: Fri Jan 17 04:33:49 UTC 2025. 204s Run 'dpkg-reconfigure tzdata' if you wish to change it. 204s 204s Setting up vim-common (2:9.1.0967-1ubuntu1) ... 204s Setting up libatomic1:amd64 (14.2.0-13ubuntu1) ... 204s Setting up libsystemd-shared:amd64 (257.1-7ubuntu1) ... 204s Setting up libbinutils:amd64 (2.43.50.20250108-1ubuntu1) ... 204s Setting up linux-tools-common (6.11.0-9.9) ... 204s Setting up libpython3.13-stdlib:amd64 (3.13.1-2) ... 204s Setting up zstd (1.5.6+dfsg-2) ... 204s Setting up libpython3-stdlib:amd64 (3.13.1-1~exp2) ... 204s Setting up libctf0:amd64 (2.43.50.20250108-1ubuntu1) ... 204s Setting up python3.13 (3.13.1-2) ... 205s Setting up python3 (3.13.1-1~exp2) ... 205s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 205s for fn in glob1(directory, "%s.*" % fname): 205s Setting up systemd (257.1-7ubuntu1) ... 205s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 205s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 205s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 206s Setting up vim-tiny (2:9.1.0967-1ubuntu1) ... 206s Setting up libgprofng0:amd64 (2.43.50.20250108-1ubuntu1) ... 206s Setting up systemd-cryptsetup (257.1-7ubuntu1) ... 206s Setting up systemd-timesyncd (257.1-7ubuntu1) ... 206s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 206s Setting up udev (257.1-7ubuntu1) ... 207s Setting up systemd-resolved (257.1-7ubuntu1) ... 207s Setting up binutils-x86-64-linux-gnu (2.43.50.20250108-1ubuntu1) ... 207s Setting up systemd-sysv (257.1-7ubuntu1) ... 207s Setting up libnss-systemd:amd64 (257.1-7ubuntu1) ... 207s Setting up binutils (2.43.50.20250108-1ubuntu1) ... 207s Setting up libpam-systemd:amd64 (257.1-7ubuntu1) ... 207s Processing triggers for libc-bin (2.40-4ubuntu1) ... 207s Processing triggers for man-db (2.13.0-1) ... 208s Processing triggers for dbus (1.14.10-4ubuntu5) ... 209s Processing triggers for shared-mime-info (2.4-5) ... 209s Warning: program compiled against libxml 212 using older 209 209s Processing triggers for initramfs-tools (0.142ubuntu35) ... 209s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic 209s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 216s Reading package lists... 217s Building dependency tree... 217s Reading state information... 217s Starting pkgProblemResolver with broken count: 0 217s Starting 2 pkgProblemResolver with broken count: 0 217s Done 217s The following packages will be REMOVED: 217s python3.12* python3.12-minimal* 217s 0 upgraded, 0 newly installed, 2 to remove and 2 not upgraded. 217s After this operation, 8926 kB disk space will be freed. 217s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76562 files and directories currently installed.) 217s Removing python3.12 (3.12.8-3) ... 217s Removing python3.12-minimal (3.12.8-3) ... 218s /usr/bin/py3clean:125: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 218s for fn in glob1(directory, "%s.%s.py[co]" % (fname, magic_tag)): 218s Processing triggers for man-db (2.13.0-1) ... 218s Processing triggers for systemd (257.1-7ubuntu1) ... 218s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76534 files and directories currently installed.) 218s Purging configuration files for python3.12-minimal (3.12.8-3) ... 219s autopkgtest [04:34:04]: rebooting testbed after setup commands that affected boot 246s autopkgtest [04:34:31]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 248s autopkgtest [04:34:33]: @@@@@@@@@@@@@@@@@@@@ apt-source rdkit 255s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/universe rdkit 202409.4-1 (dsc) [3024 B] 255s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe rdkit 202409.4-1 (tar) [63.4 MB] 255s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe rdkit 202409.4-1 (diff) [39.7 kB] 255s gpgv: Signature made Wed Jan 15 17:30:33 2025 UTC 255s gpgv: using RSA key 9CA877749FAB2E4FA96862ECDC686A27B43481B0 255s gpgv: Can't check signature: No public key 255s dpkg-source: warning: cannot verify inline signature for ./rdkit_202409.4-1.dsc: no acceptable signature found 257s autopkgtest [04:34:42]: testing package rdkit version 202409.4-1 258s autopkgtest [04:34:43]: build not needed 268s autopkgtest [04:34:53]: test installcheck: preparing testbed 268s Reading package lists... 268s Building dependency tree... 268s Reading state information... 268s Starting pkgProblemResolver with broken count: 0 269s Starting 2 pkgProblemResolver with broken count: 0 269s Done 269s The following NEW packages will be installed: 269s fontconfig-config fonts-freefont-ttf libblas3 libboost-iostreams1.83.0 269s libboost-numpy1.83.0 libboost-python1.83.0 libboost-serialization1.83.0 269s libcairo2 libcoordgen3 libfontconfig1 libgfortran5 libinchi1.07 269s libio-pty-perl libipc-run-perl libjs-jquery libjs-underscore libjson-perl 269s liblapack3 libmaeparser1 libpixman-1-0 libpq5 librdkit-dev librdkit1t64 269s libxcb-render0 libxcb-shm0 libxrender1 libxslt1.1 postgresql-17 269s postgresql-17-rdkit postgresql-client-17 postgresql-client-common 269s postgresql-common python3-numpy python3-rdkit rdkit-data rdkit-doc ssl-cert 269s 0 upgraded, 37 newly installed, 0 to remove and 2 not upgraded. 269s Need to get 68.5 MB of archives. 269s After this operation, 340 MB of additional disk space will be used. 269s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libjson-perl all 4.10000-1 [81.9 kB] 269s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libio-pty-perl amd64 1:1.20-1build3 [31.4 kB] 269s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libipc-run-perl all 20231003.0-2 [91.5 kB] 269s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 postgresql-client-common all 267 [37.1 kB] 269s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 ssl-cert all 1.1.3ubuntu1 [18.7 kB] 269s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 postgresql-common all 267 [162 kB] 269s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-freefont-ttf all 20211204+svn4273-2 [5641 kB] 270s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 270s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-4 [332 kB] 270s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost-iostreams1.83.0 amd64 1.83.0-4ubuntu2 [260 kB] 270s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost-python1.83.0 amd64 1.83.0-4ubuntu2 [325 kB] 270s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-numpy1.83.0 amd64 1.83.0-4ubuntu2 [242 kB] 270s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-serialization1.83.0 amd64 1.83.0-4ubuntu2 [343 kB] 270s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 270s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 270s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 270s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 270s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 270s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 270s Get:20 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcoordgen3 amd64 3.0.2-1 [215 kB] 270s Get:21 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgfortran5 amd64 14.2.0-13ubuntu1 [909 kB] 270s Get:22 http://ftpmaster.internal/ubuntu plucky/universe amd64 libinchi1.07 amd64 1.07.1+dfsg-6 [702 kB] 270s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 270s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 270s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-4 [3177 kB] 270s Get:26 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmaeparser1 amd64 1.3.1-1build1 [90.2 kB] 270s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libpq5 amd64 17.2-1 [153 kB] 270s Get:28 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 librdkit1t64 amd64 202409.4-1 [6193 kB] 270s Get:29 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 librdkit-dev amd64 202409.4-1 [346 kB] 270s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu2 [175 kB] 270s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 postgresql-client-17 amd64 17.2-1 [1405 kB] 270s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 postgresql-17 amd64 17.2-1 [16.5 MB] 271s Get:33 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 postgresql-17-rdkit amd64 202409.4-1 [124 kB] 271s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-12 [5319 kB] 271s Get:35 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 rdkit-data all 202409.4-1 [12.6 MB] 272s Get:36 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-rdkit amd64 202409.4-1 [4971 kB] 272s Get:37 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 rdkit-doc all 202409.4-1 [6325 kB] 273s Preconfiguring packages ... 273s Fetched 68.5 MB in 4s (17.2 MB/s) 273s Selecting previously unselected package libjson-perl. 273s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76534 files and directories currently installed.) 273s Preparing to unpack .../00-libjson-perl_4.10000-1_all.deb ... 273s Unpacking libjson-perl (4.10000-1) ... 273s Selecting previously unselected package libio-pty-perl. 273s Preparing to unpack .../01-libio-pty-perl_1%3a1.20-1build3_amd64.deb ... 273s Unpacking libio-pty-perl (1:1.20-1build3) ... 273s Selecting previously unselected package libipc-run-perl. 273s Preparing to unpack .../02-libipc-run-perl_20231003.0-2_all.deb ... 273s Unpacking libipc-run-perl (20231003.0-2) ... 273s Selecting previously unselected package postgresql-client-common. 273s Preparing to unpack .../03-postgresql-client-common_267_all.deb ... 273s Unpacking postgresql-client-common (267) ... 273s Selecting previously unselected package ssl-cert. 273s Preparing to unpack .../04-ssl-cert_1.1.3ubuntu1_all.deb ... 273s Unpacking ssl-cert (1.1.3ubuntu1) ... 273s Selecting previously unselected package postgresql-common. 273s Preparing to unpack .../05-postgresql-common_267_all.deb ... 273s Adding 'diversion of /usr/bin/pg_config to /usr/bin/pg_config.libpq-dev by postgresql-common' 273s Unpacking postgresql-common (267) ... 274s Selecting previously unselected package fonts-freefont-ttf. 274s Preparing to unpack .../06-fonts-freefont-ttf_20211204+svn4273-2_all.deb ... 274s Unpacking fonts-freefont-ttf (20211204+svn4273-2) ... 274s Selecting previously unselected package fontconfig-config. 274s Preparing to unpack .../07-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 274s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 274s Selecting previously unselected package libblas3:amd64. 274s Preparing to unpack .../08-libblas3_3.12.0-4_amd64.deb ... 274s Unpacking libblas3:amd64 (3.12.0-4) ... 274s Selecting previously unselected package libboost-iostreams1.83.0:amd64. 274s Preparing to unpack .../09-libboost-iostreams1.83.0_1.83.0-4ubuntu2_amd64.deb ... 274s Unpacking libboost-iostreams1.83.0:amd64 (1.83.0-4ubuntu2) ... 274s Selecting previously unselected package libboost-python1.83.0. 274s Preparing to unpack .../10-libboost-python1.83.0_1.83.0-4ubuntu2_amd64.deb ... 274s Unpacking libboost-python1.83.0 (1.83.0-4ubuntu2) ... 274s Selecting previously unselected package libboost-numpy1.83.0. 274s Preparing to unpack .../11-libboost-numpy1.83.0_1.83.0-4ubuntu2_amd64.deb ... 274s Unpacking libboost-numpy1.83.0 (1.83.0-4ubuntu2) ... 274s Selecting previously unselected package libboost-serialization1.83.0:amd64. 274s Preparing to unpack .../12-libboost-serialization1.83.0_1.83.0-4ubuntu2_amd64.deb ... 274s Unpacking libboost-serialization1.83.0:amd64 (1.83.0-4ubuntu2) ... 274s Selecting previously unselected package libfontconfig1:amd64. 274s Preparing to unpack .../13-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 274s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 274s Selecting previously unselected package libpixman-1-0:amd64. 274s Preparing to unpack .../14-libpixman-1-0_0.44.0-3_amd64.deb ... 274s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 274s Selecting previously unselected package libxcb-render0:amd64. 274s Preparing to unpack .../15-libxcb-render0_1.17.0-2_amd64.deb ... 274s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 274s Selecting previously unselected package libxcb-shm0:amd64. 274s Preparing to unpack .../16-libxcb-shm0_1.17.0-2_amd64.deb ... 274s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 274s Selecting previously unselected package libxrender1:amd64. 274s Preparing to unpack .../17-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 274s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 274s Selecting previously unselected package libcairo2:amd64. 274s Preparing to unpack .../18-libcairo2_1.18.2-2_amd64.deb ... 274s Unpacking libcairo2:amd64 (1.18.2-2) ... 274s Selecting previously unselected package libcoordgen3:amd64. 274s Preparing to unpack .../19-libcoordgen3_3.0.2-1_amd64.deb ... 274s Unpacking libcoordgen3:amd64 (3.0.2-1) ... 274s Selecting previously unselected package libgfortran5:amd64. 274s Preparing to unpack .../20-libgfortran5_14.2.0-13ubuntu1_amd64.deb ... 274s Unpacking libgfortran5:amd64 (14.2.0-13ubuntu1) ... 274s Selecting previously unselected package libinchi1.07. 274s Preparing to unpack .../21-libinchi1.07_1.07.1+dfsg-6_amd64.deb ... 274s Unpacking libinchi1.07 (1.07.1+dfsg-6) ... 274s Selecting previously unselected package libjs-jquery. 274s Preparing to unpack .../22-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 274s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 274s Selecting previously unselected package libjs-underscore. 274s Preparing to unpack .../23-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 274s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 274s Selecting previously unselected package liblapack3:amd64. 274s Preparing to unpack .../24-liblapack3_3.12.0-4_amd64.deb ... 274s Unpacking liblapack3:amd64 (3.12.0-4) ... 274s Selecting previously unselected package libmaeparser1:amd64. 274s Preparing to unpack .../25-libmaeparser1_1.3.1-1build1_amd64.deb ... 274s Unpacking libmaeparser1:amd64 (1.3.1-1build1) ... 274s Selecting previously unselected package libpq5:amd64. 274s Preparing to unpack .../26-libpq5_17.2-1_amd64.deb ... 274s Unpacking libpq5:amd64 (17.2-1) ... 274s Selecting previously unselected package librdkit1t64. 274s Preparing to unpack .../27-librdkit1t64_202409.4-1_amd64.deb ... 274s Unpacking librdkit1t64 (202409.4-1) ... 274s Selecting previously unselected package librdkit-dev. 274s Preparing to unpack .../28-librdkit-dev_202409.4-1_amd64.deb ... 274s Unpacking librdkit-dev (202409.4-1) ... 275s Selecting previously unselected package libxslt1.1:amd64. 275s Preparing to unpack .../29-libxslt1.1_1.1.39-0exp1ubuntu2_amd64.deb ... 275s Unpacking libxslt1.1:amd64 (1.1.39-0exp1ubuntu2) ... 275s Selecting previously unselected package postgresql-client-17. 275s Preparing to unpack .../30-postgresql-client-17_17.2-1_amd64.deb ... 275s Unpacking postgresql-client-17 (17.2-1) ... 275s Selecting previously unselected package postgresql-17. 275s Preparing to unpack .../31-postgresql-17_17.2-1_amd64.deb ... 275s Unpacking postgresql-17 (17.2-1) ... 275s Selecting previously unselected package postgresql-17-rdkit. 275s Preparing to unpack .../32-postgresql-17-rdkit_202409.4-1_amd64.deb ... 275s Unpacking postgresql-17-rdkit (202409.4-1) ... 275s Selecting previously unselected package python3-numpy. 275s Preparing to unpack .../33-python3-numpy_1%3a1.26.4+ds-12_amd64.deb ... 275s Unpacking python3-numpy (1:1.26.4+ds-12) ... 275s Selecting previously unselected package rdkit-data. 275s Preparing to unpack .../34-rdkit-data_202409.4-1_all.deb ... 275s Unpacking rdkit-data (202409.4-1) ... 276s Selecting previously unselected package python3-rdkit. 276s Preparing to unpack .../35-python3-rdkit_202409.4-1_amd64.deb ... 276s Unpacking python3-rdkit (202409.4-1) ... 276s Selecting previously unselected package rdkit-doc. 276s Preparing to unpack .../36-rdkit-doc_202409.4-1_all.deb ... 276s Unpacking rdkit-doc (202409.4-1) ... 277s Setting up libboost-python1.83.0 (1.83.0-4ubuntu2) ... 277s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 277s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 277s Setting up libio-pty-perl (1:1.20-1build3) ... 277s Setting up libxcb-render0:amd64 (1.17.0-2) ... 277s Setting up libpq5:amd64 (17.2-1) ... 277s Setting up fonts-freefont-ttf (20211204+svn4273-2) ... 277s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 277s Setting up rdkit-data (202409.4-1) ... 277s Setting up libboost-serialization1.83.0:amd64 (1.83.0-4ubuntu2) ... 277s Setting up libboost-numpy1.83.0 (1.83.0-4ubuntu2) ... 277s Setting up libblas3:amd64 (3.12.0-4) ... 277s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 277s Setting up ssl-cert (1.1.3ubuntu1) ... 277s Created symlink '/etc/systemd/system/multi-user.target.wants/ssl-cert.service' → '/usr/lib/systemd/system/ssl-cert.service'. 277s Setting up libboost-iostreams1.83.0:amd64 (1.83.0-4ubuntu2) ... 277s Setting up libipc-run-perl (20231003.0-2) ... 277s Setting up libgfortran5:amd64 (14.2.0-13ubuntu1) ... 277s Setting up libjson-perl (4.10000-1) ... 277s Setting up libxslt1.1:amd64 (1.1.39-0exp1ubuntu2) ... 277s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 277s Setting up libcoordgen3:amd64 (3.0.2-1) ... 277s Setting up libinchi1.07 (1.07.1+dfsg-6) ... 277s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 277s Setting up postgresql-client-common (267) ... 277s Setting up liblapack3:amd64 (3.12.0-4) ... 277s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 277s Setting up postgresql-client-17 (17.2-1) ... 278s update-alternatives: using /usr/share/postgresql/17/man/man1/psql.1.gz to provide /usr/share/man/man1/psql.1.gz (psql.1.gz) in auto mode 278s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 278s Setting up rdkit-doc (202409.4-1) ... 278s Setting up libmaeparser1:amd64 (1.3.1-1build1) ... 278s Setting up postgresql-common (267) ... 278s Creating config file /etc/postgresql-common/createcluster.conf with new version 278s Building PostgreSQL dictionaries from installed myspell/hunspell packages... 278s Removing obsolete dictionary files: 279s Created symlink '/etc/systemd/system/multi-user.target.wants/postgresql.service' → '/usr/lib/systemd/system/postgresql.service'. 279s Setting up python3-numpy (1:1.26.4+ds-12) ... 280s Setting up libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 280s Setting up postgresql-17 (17.2-1) ... 280s Creating new PostgreSQL cluster 17/main ... 280s /usr/lib/postgresql/17/bin/initdb -D /var/lib/postgresql/17/main --auth-local peer --auth-host scram-sha-256 --no-instructions 280s The files belonging to this database system will be owned by user "postgres". 280s This user must also own the server process. 280s 280s The database cluster will be initialized with locale "C.UTF-8". 280s The default database encoding has accordingly been set to "UTF8". 280s The default text search configuration will be set to "english". 280s 280s Data page checksums are disabled. 280s 280s fixing permissions on existing directory /var/lib/postgresql/17/main ... ok 280s creating subdirectories ... ok 280s selecting dynamic shared memory implementation ... posix 280s selecting default "max_connections" ... 100 280s selecting default "shared_buffers" ... 128MB 280s selecting default time zone ... Etc/UTC 280s creating configuration files ... ok 281s running bootstrap script ... ok 281s performing post-bootstrap initialization ... ok 281s syncing data to disk ... ok 285s Setting up libcairo2:amd64 (1.18.2-2) ... 285s Setting up librdkit1t64 (202409.4-1) ... 285s Setting up postgresql-17-rdkit (202409.4-1) ... 285s Setting up python3-rdkit (202409.4-1) ... 285s Setting up librdkit-dev (202409.4-1) ... 285s Processing triggers for man-db (2.13.0-1) ... 286s Processing triggers for libc-bin (2.40-4ubuntu1) ... 288s autopkgtest [04:35:13]: test installcheck: [----------------------- 288s ### PostgreSQL 17 installcheck ### 288s Creating new PostgreSQL cluster 17/regress ... 291s make: Entering directory '/tmp/autopkgtest.pmRZFq/build.byt/src/Code/PgSQL/rdkit' 291s echo "# +++ regress install-check in +++" && /usr/lib/postgresql/17/lib/pgxs/src/makefiles/../../src/test/regress/pg_regress --inputdir=/tmp/autopkgtest.pmRZFq/build.byt/src --bindir='/usr/lib/postgresql/17/bin' --dbname=contrib_regression rdkit-91 props btree molgist bfpgist-91 bfpgin sfpgist slfpgist fps reaction fmcs query xqm 291s # +++ regress install-check in +++ 291s # using postmaster on localhost, port 5433 293s ok 1 - rdkit-91 1862 ms 293s ok 2 - props 57 ms 293s ok 3 - btree 281 ms 294s ok 4 - molgist 960 ms 294s ok 5 - bfpgist-91 72 ms 294s ok 6 - bfpgin 135 ms 295s ok 7 - sfpgist 56 ms 295s ok 8 - slfpgist 66 ms 295s ok 9 - fps 68 ms 297s ok 10 - reaction 2129 ms 297s ok 11 - fmcs 199 ms 297s ok 12 - query 35 ms 297s ok 13 - xqm 192 ms 297s 1..13 297s # All 13 tests passed. 297s make: Leaving directory '/tmp/autopkgtest.pmRZFq/build.byt/src/Code/PgSQL/rdkit' 297s Dropping cluster 17/regress ... 297s ### End 17 installcheck ### 298s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 298s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 298s autopkgtest [04:35:23]: test installcheck: -----------------------] 298s autopkgtest [04:35:23]: test installcheck: - - - - - - - - - - results - - - - - - - - - - 298s installcheck PASS 299s autopkgtest [04:35:24]: test importcheck: preparing testbed 353s autopkgtest [04:36:18]: testbed dpkg architecture: amd64 353s autopkgtest [04:36:18]: testbed apt version: 2.9.18 353s autopkgtest [04:36:18]: @@@@@@@@@@@@@@@@@@@@ test bed setup 354s autopkgtest [04:36:19]: testbed release detected to be: plucky 354s autopkgtest [04:36:19]: updating testbed package index (apt update) 355s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 355s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 355s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 355s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 355s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [170 kB] 355s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.4 kB] 355s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [913 kB] 355s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 355s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [326 kB] 355s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [223 kB] 355s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2408 B] 355s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [40.1 kB] 355s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [1094 kB] 355s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [475 kB] 355s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [7288 B] 355s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [26.7 kB] 355s Fetched 3376 kB in 1s (3415 kB/s) 356s Reading package lists... 357s Reading package lists... 357s Building dependency tree... 357s Reading state information... 357s Calculating upgrade... 357s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 357s Reading package lists... 357s Building dependency tree... 357s Reading state information... 358s 0 upgraded, 0 newly installed, 0 to remove and 36 not upgraded. 358s autopkgtest [04:36:23]: upgrading testbed (apt dist-upgrade and autopurge) 358s Reading package lists... 358s Building dependency tree... 358s Reading state information... 358s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 358s Starting 2 pkgProblemResolver with broken count: 0 358s Done 359s Entering ResolveByKeep 359s 359s The following packages were automatically installed and are no longer required: 359s python3.12 python3.12-minimal 359s Use 'sudo apt autoremove' to remove them. 359s The following NEW packages will be installed: 359s libpython3.13-minimal libpython3.13-stdlib python3.13 python3.13-minimal 359s The following packages have been kept back: 359s libnftables1 nftables 359s The following packages will be upgraded: 359s binutils binutils-common binutils-x86-64-linux-gnu gcc-14-base libatomic1 359s libbinutils libctf-nobfd0 libctf0 libgcc-s1 libgprofng0 libnss-systemd 359s libpam-systemd libpython3-stdlib libsframe1 libstdc++6 libsystemd-shared 359s libsystemd0 libudev1 libzstd1 linux-libc-dev linux-tools-common python3 359s python3-minimal systemd systemd-cryptsetup systemd-resolved systemd-sysv 359s systemd-timesyncd tzdata udev vim-common vim-tiny xxd zstd 359s 34 upgraded, 4 newly installed, 0 to remove and 2 not upgraded. 359s Need to get 26.5 MB of archives. 359s After this operation, 23.4 MB of additional disk space will be used. 359s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.1-2 [881 kB] 359s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.1-2 [2358 kB] 360s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.13.1-1~exp2 [27.6 kB] 360s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.13.1-1~exp2 [23.9 kB] 360s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 tzdata all 2024b-6ubuntu1 [197 kB] 360s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.1-2 [2088 kB] 360s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.1-2 [729 kB] 360s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.13.1-1~exp2 [10.2 kB] 360s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 systemd-timesyncd amd64 257.1-7ubuntu1 [42.0 kB] 360s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 systemd-resolved amd64 257.1-7ubuntu1 [341 kB] 360s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 systemd-cryptsetup amd64 257.1-7ubuntu1 [124 kB] 360s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libsystemd-shared amd64 257.1-7ubuntu1 [2367 kB] 360s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libsystemd0 amd64 257.1-7ubuntu1 [592 kB] 360s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 systemd-sysv amd64 257.1-7ubuntu1 [11.8 kB] 360s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libnss-systemd amd64 257.1-7ubuntu1 [199 kB] 360s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpam-systemd amd64 257.1-7ubuntu1 [301 kB] 360s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 systemd amd64 257.1-7ubuntu1 [3696 kB] 360s Get:18 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 udev amd64 257.1-7ubuntu1 [2116 kB] 360s Get:19 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libudev1 amd64 257.1-7ubuntu1 [213 kB] 360s Get:20 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 gcc-14-base amd64 14.2.0-13ubuntu1 [53.0 kB] 360s Get:21 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libstdc++6 amd64 14.2.0-13ubuntu1 [787 kB] 360s Get:22 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libatomic1 amd64 14.2.0-13ubuntu1 [10.3 kB] 360s Get:23 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgcc-s1 amd64 14.2.0-13ubuntu1 [78.2 kB] 360s Get:24 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libzstd1 amd64 1.5.6+dfsg-2 [369 kB] 360s Get:25 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 vim-tiny amd64 2:9.1.0967-1ubuntu1 [1039 kB] 360s Get:26 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 vim-common all 2:9.1.0967-1ubuntu1 [396 kB] 360s Get:27 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 xxd amd64 2:9.1.0967-1ubuntu1 [68.0 kB] 360s Get:28 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgprofng0 amd64 2.43.50.20250108-1ubuntu1 [884 kB] 360s Get:29 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libctf0 amd64 2.43.50.20250108-1ubuntu1 [96.4 kB] 360s Get:30 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libctf-nobfd0 amd64 2.43.50.20250108-1ubuntu1 [98.6 kB] 360s Get:31 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.43.50.20250108-1ubuntu1 [2521 kB] 360s Get:32 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libbinutils amd64 2.43.50.20250108-1ubuntu1 [584 kB] 360s Get:33 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 binutils amd64 2.43.50.20250108-1ubuntu1 [3280 B] 360s Get:34 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 binutils-common amd64 2.43.50.20250108-1ubuntu1 [245 kB] 360s Get:35 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libsframe1 amd64 2.43.50.20250108-1ubuntu1 [14.6 kB] 360s Get:36 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 linux-libc-dev amd64 6.11.0-9.9 [1667 kB] 360s Get:37 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 linux-tools-common all 6.11.0-9.9 [484 kB] 360s Get:38 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 zstd amd64 1.5.6+dfsg-2 [775 kB] 361s Preconfiguring packages ... 361s Fetched 26.5 MB in 2s (16.8 MB/s) 361s Selecting previously unselected package libpython3.13-minimal:amd64. 361s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 361s Preparing to unpack .../libpython3.13-minimal_3.13.1-2_amd64.deb ... 361s Unpacking libpython3.13-minimal:amd64 (3.13.1-2) ... 361s Selecting previously unselected package python3.13-minimal. 361s Preparing to unpack .../python3.13-minimal_3.13.1-2_amd64.deb ... 361s Unpacking python3.13-minimal (3.13.1-2) ... 361s Setting up libpython3.13-minimal:amd64 (3.13.1-2) ... 361s Setting up python3.13-minimal (3.13.1-2) ... 362s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76144 files and directories currently installed.) 362s Preparing to unpack .../python3-minimal_3.13.1-1~exp2_amd64.deb ... 362s Unpacking python3-minimal (3.13.1-1~exp2) over (3.12.8-1) ... 362s Setting up python3-minimal (3.13.1-1~exp2) ... 362s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76144 files and directories currently installed.) 362s Preparing to unpack .../0-python3_3.13.1-1~exp2_amd64.deb ... 362s Unpacking python3 (3.13.1-1~exp2) over (3.12.8-1) ... 362s Preparing to unpack .../1-tzdata_2024b-6ubuntu1_all.deb ... 362s Unpacking tzdata (2024b-6ubuntu1) over (2024b-4ubuntu1) ... 362s Selecting previously unselected package libpython3.13-stdlib:amd64. 362s Preparing to unpack .../2-libpython3.13-stdlib_3.13.1-2_amd64.deb ... 362s Unpacking libpython3.13-stdlib:amd64 (3.13.1-2) ... 362s Selecting previously unselected package python3.13. 362s Preparing to unpack .../3-python3.13_3.13.1-2_amd64.deb ... 362s Unpacking python3.13 (3.13.1-2) ... 362s Preparing to unpack .../4-libpython3-stdlib_3.13.1-1~exp2_amd64.deb ... 362s Unpacking libpython3-stdlib:amd64 (3.13.1-1~exp2) over (3.12.8-1) ... 362s Preparing to unpack .../5-systemd-timesyncd_257.1-7ubuntu1_amd64.deb ... 362s Unpacking systemd-timesyncd (257.1-7ubuntu1) over (257-2ubuntu1) ... 362s Preparing to unpack .../6-systemd-resolved_257.1-7ubuntu1_amd64.deb ... 362s Unpacking systemd-resolved (257.1-7ubuntu1) over (257-2ubuntu1) ... 362s Preparing to unpack .../7-systemd-cryptsetup_257.1-7ubuntu1_amd64.deb ... 362s Unpacking systemd-cryptsetup (257.1-7ubuntu1) over (257-2ubuntu1) ... 363s Preparing to unpack .../8-libsystemd-shared_257.1-7ubuntu1_amd64.deb ... 363s Unpacking libsystemd-shared:amd64 (257.1-7ubuntu1) over (257-2ubuntu1) ... 363s Preparing to unpack .../9-libsystemd0_257.1-7ubuntu1_amd64.deb ... 363s Unpacking libsystemd0:amd64 (257.1-7ubuntu1) over (257-2ubuntu1) ... 363s Setting up libsystemd0:amd64 (257.1-7ubuntu1) ... 363s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76561 files and directories currently installed.) 363s Preparing to unpack .../0-systemd-sysv_257.1-7ubuntu1_amd64.deb ... 363s Unpacking systemd-sysv (257.1-7ubuntu1) over (257-2ubuntu1) ... 363s Preparing to unpack .../1-libnss-systemd_257.1-7ubuntu1_amd64.deb ... 363s Unpacking libnss-systemd:amd64 (257.1-7ubuntu1) over (257-2ubuntu1) ... 363s Preparing to unpack .../2-libpam-systemd_257.1-7ubuntu1_amd64.deb ... 363s Unpacking libpam-systemd:amd64 (257.1-7ubuntu1) over (257-2ubuntu1) ... 363s Preparing to unpack .../3-systemd_257.1-7ubuntu1_amd64.deb ... 363s Unpacking systemd (257.1-7ubuntu1) over (257-2ubuntu1) ... 363s Preparing to unpack .../4-udev_257.1-7ubuntu1_amd64.deb ... 363s Unpacking udev (257.1-7ubuntu1) over (257-2ubuntu1) ... 363s Preparing to unpack .../5-libudev1_257.1-7ubuntu1_amd64.deb ... 363s Unpacking libudev1:amd64 (257.1-7ubuntu1) over (257-2ubuntu1) ... 363s Setting up libudev1:amd64 (257.1-7ubuntu1) ... 363s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76562 files and directories currently installed.) 363s Preparing to unpack .../gcc-14-base_14.2.0-13ubuntu1_amd64.deb ... 363s Unpacking gcc-14-base:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 363s Setting up gcc-14-base:amd64 (14.2.0-13ubuntu1) ... 363s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76562 files and directories currently installed.) 363s Preparing to unpack .../libstdc++6_14.2.0-13ubuntu1_amd64.deb ... 363s Unpacking libstdc++6:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 364s Setting up libstdc++6:amd64 (14.2.0-13ubuntu1) ... 364s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76562 files and directories currently installed.) 364s Preparing to unpack .../libatomic1_14.2.0-13ubuntu1_amd64.deb ... 364s Unpacking libatomic1:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 364s Preparing to unpack .../libgcc-s1_14.2.0-13ubuntu1_amd64.deb ... 364s Unpacking libgcc-s1:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 364s Setting up libgcc-s1:amd64 (14.2.0-13ubuntu1) ... 364s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76562 files and directories currently installed.) 364s Preparing to unpack .../libzstd1_1.5.6+dfsg-2_amd64.deb ... 364s Unpacking libzstd1:amd64 (1.5.6+dfsg-2) over (1.5.6+dfsg-1) ... 364s Setting up libzstd1:amd64 (1.5.6+dfsg-2) ... 364s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76562 files and directories currently installed.) 364s Preparing to unpack .../00-vim-tiny_2%3a9.1.0967-1ubuntu1_amd64.deb ... 364s Unpacking vim-tiny (2:9.1.0967-1ubuntu1) over (2:9.1.0861-1ubuntu1) ... 364s Preparing to unpack .../01-vim-common_2%3a9.1.0967-1ubuntu1_all.deb ... 364s Unpacking vim-common (2:9.1.0967-1ubuntu1) over (2:9.1.0861-1ubuntu1) ... 364s Preparing to unpack .../02-xxd_2%3a9.1.0967-1ubuntu1_amd64.deb ... 364s Unpacking xxd (2:9.1.0967-1ubuntu1) over (2:9.1.0861-1ubuntu1) ... 364s Preparing to unpack .../03-libgprofng0_2.43.50.20250108-1ubuntu1_amd64.deb ... 364s Unpacking libgprofng0:amd64 (2.43.50.20250108-1ubuntu1) over (2.43.50.20241230-1ubuntu1) ... 364s Preparing to unpack .../04-libctf0_2.43.50.20250108-1ubuntu1_amd64.deb ... 364s Unpacking libctf0:amd64 (2.43.50.20250108-1ubuntu1) over (2.43.50.20241230-1ubuntu1) ... 364s Preparing to unpack .../05-libctf-nobfd0_2.43.50.20250108-1ubuntu1_amd64.deb ... 364s Unpacking libctf-nobfd0:amd64 (2.43.50.20250108-1ubuntu1) over (2.43.50.20241230-1ubuntu1) ... 364s Preparing to unpack .../06-binutils-x86-64-linux-gnu_2.43.50.20250108-1ubuntu1_amd64.deb ... 364s Unpacking binutils-x86-64-linux-gnu (2.43.50.20250108-1ubuntu1) over (2.43.50.20241230-1ubuntu1) ... 364s Preparing to unpack .../07-libbinutils_2.43.50.20250108-1ubuntu1_amd64.deb ... 364s Unpacking libbinutils:amd64 (2.43.50.20250108-1ubuntu1) over (2.43.50.20241230-1ubuntu1) ... 364s Preparing to unpack .../08-binutils_2.43.50.20250108-1ubuntu1_amd64.deb ... 364s Unpacking binutils (2.43.50.20250108-1ubuntu1) over (2.43.50.20241230-1ubuntu1) ... 364s Preparing to unpack .../09-binutils-common_2.43.50.20250108-1ubuntu1_amd64.deb ... 364s Unpacking binutils-common:amd64 (2.43.50.20250108-1ubuntu1) over (2.43.50.20241230-1ubuntu1) ... 364s Preparing to unpack .../10-libsframe1_2.43.50.20250108-1ubuntu1_amd64.deb ... 364s Unpacking libsframe1:amd64 (2.43.50.20250108-1ubuntu1) over (2.43.50.20241230-1ubuntu1) ... 364s Preparing to unpack .../11-linux-libc-dev_6.11.0-9.9_amd64.deb ... 364s Unpacking linux-libc-dev:amd64 (6.11.0-9.9) over (6.11.0-8.8) ... 364s Preparing to unpack .../12-linux-tools-common_6.11.0-9.9_all.deb ... 364s Unpacking linux-tools-common (6.11.0-9.9) over (6.11.0-8.8) ... 365s Preparing to unpack .../13-zstd_1.5.6+dfsg-2_amd64.deb ... 365s Unpacking zstd (1.5.6+dfsg-2) over (1.5.6+dfsg-1) ... 365s Setting up binutils-common:amd64 (2.43.50.20250108-1ubuntu1) ... 365s Installing new version of config file /etc/gprofng.rc ... 365s Setting up linux-libc-dev:amd64 (6.11.0-9.9) ... 365s Setting up libctf-nobfd0:amd64 (2.43.50.20250108-1ubuntu1) ... 365s Setting up xxd (2:9.1.0967-1ubuntu1) ... 365s Setting up libsframe1:amd64 (2.43.50.20250108-1ubuntu1) ... 365s Setting up tzdata (2024b-6ubuntu1) ... 365s 365s Current default time zone: 'Etc/UTC' 365s Local time is now: Fri Jan 17 04:36:30 UTC 2025. 365s Universal Time is now: Fri Jan 17 04:36:30 UTC 2025. 365s Run 'dpkg-reconfigure tzdata' if you wish to change it. 365s 365s Setting up vim-common (2:9.1.0967-1ubuntu1) ... 365s Setting up libatomic1:amd64 (14.2.0-13ubuntu1) ... 365s Setting up libsystemd-shared:amd64 (257.1-7ubuntu1) ... 365s Setting up libbinutils:amd64 (2.43.50.20250108-1ubuntu1) ... 365s Setting up linux-tools-common (6.11.0-9.9) ... 365s Setting up libpython3.13-stdlib:amd64 (3.13.1-2) ... 365s Setting up zstd (1.5.6+dfsg-2) ... 365s Setting up libpython3-stdlib:amd64 (3.13.1-1~exp2) ... 365s Setting up libctf0:amd64 (2.43.50.20250108-1ubuntu1) ... 365s Setting up python3.13 (3.13.1-2) ... 366s Setting up python3 (3.13.1-1~exp2) ... 366s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 366s for fn in glob1(directory, "%s.*" % fname): 366s Setting up systemd (257.1-7ubuntu1) ... 366s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 366s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 366s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 367s Setting up vim-tiny (2:9.1.0967-1ubuntu1) ... 367s Setting up libgprofng0:amd64 (2.43.50.20250108-1ubuntu1) ... 367s Setting up systemd-cryptsetup (257.1-7ubuntu1) ... 367s Setting up systemd-timesyncd (257.1-7ubuntu1) ... 367s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 367s Setting up udev (257.1-7ubuntu1) ... 368s Setting up systemd-resolved (257.1-7ubuntu1) ... 368s Setting up binutils-x86-64-linux-gnu (2.43.50.20250108-1ubuntu1) ... 368s Setting up systemd-sysv (257.1-7ubuntu1) ... 368s Setting up libnss-systemd:amd64 (257.1-7ubuntu1) ... 368s Setting up binutils (2.43.50.20250108-1ubuntu1) ... 368s Setting up libpam-systemd:amd64 (257.1-7ubuntu1) ... 368s Processing triggers for libc-bin (2.40-4ubuntu1) ... 368s Processing triggers for man-db (2.13.0-1) ... 370s Processing triggers for dbus (1.14.10-4ubuntu5) ... 370s Processing triggers for shared-mime-info (2.4-5) ... 370s Warning: program compiled against libxml 212 using older 209 370s Processing triggers for initramfs-tools (0.142ubuntu35) ... 370s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic 370s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 378s Reading package lists... 378s Building dependency tree... 378s Reading state information... 379s Starting pkgProblemResolver with broken count: 0 379s Starting 2 pkgProblemResolver with broken count: 0 379s Done 379s The following packages will be REMOVED: 379s python3.12* python3.12-minimal* 379s 0 upgraded, 0 newly installed, 2 to remove and 2 not upgraded. 379s After this operation, 8926 kB disk space will be freed. 379s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76562 files and directories currently installed.) 379s Removing python3.12 (3.12.8-3) ... 379s Removing python3.12-minimal (3.12.8-3) ... 379s /usr/bin/py3clean:125: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 379s for fn in glob1(directory, "%s.%s.py[co]" % (fname, magic_tag)): 380s Processing triggers for man-db (2.13.0-1) ... 380s Processing triggers for systemd (257.1-7ubuntu1) ... 380s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76534 files and directories currently installed.) 380s Purging configuration files for python3.12-minimal (3.12.8-3) ... 381s autopkgtest [04:36:46]: rebooting testbed after setup commands that affected boot 407s Reading package lists... 407s Building dependency tree... 407s Reading state information... 407s Starting pkgProblemResolver with broken count: 0 407s Starting 2 pkgProblemResolver with broken count: 0 407s Done 408s The following NEW packages will be installed: 408s fontconfig-config fonts-freefont-ttf libblas3 libboost-iostreams1.83.0 408s libboost-numpy1.83.0 libboost-python1.83.0 libboost-serialization1.83.0 408s libcairo2 libcoordgen3 libfontconfig1 libgfortran5 libinchi1.07 408s libio-pty-perl libipc-run-perl libjs-jquery libjs-underscore libjson-perl 408s liblapack3 libmaeparser1 libpixman-1-0 libpq5 librdkit-dev librdkit1t64 408s libxcb-render0 libxcb-shm0 libxrender1 libxslt1.1 postgresql-17 408s postgresql-17-rdkit postgresql-client-17 postgresql-client-common 408s postgresql-common python3-numpy python3-rdkit rdkit-data rdkit-doc ssl-cert 408s 0 upgraded, 37 newly installed, 0 to remove and 2 not upgraded. 408s Need to get 68.5 MB of archives. 408s After this operation, 340 MB of additional disk space will be used. 408s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libjson-perl all 4.10000-1 [81.9 kB] 408s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libio-pty-perl amd64 1:1.20-1build3 [31.4 kB] 408s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libipc-run-perl all 20231003.0-2 [91.5 kB] 408s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 postgresql-client-common all 267 [37.1 kB] 408s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 ssl-cert all 1.1.3ubuntu1 [18.7 kB] 408s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 postgresql-common all 267 [162 kB] 408s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-freefont-ttf all 20211204+svn4273-2 [5641 kB] 409s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 409s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-4 [332 kB] 409s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost-iostreams1.83.0 amd64 1.83.0-4ubuntu2 [260 kB] 409s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost-python1.83.0 amd64 1.83.0-4ubuntu2 [325 kB] 409s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-numpy1.83.0 amd64 1.83.0-4ubuntu2 [242 kB] 409s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-serialization1.83.0 amd64 1.83.0-4ubuntu2 [343 kB] 409s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 409s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 409s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 409s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 409s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 409s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 409s Get:20 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcoordgen3 amd64 3.0.2-1 [215 kB] 409s Get:21 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgfortran5 amd64 14.2.0-13ubuntu1 [909 kB] 409s Get:22 http://ftpmaster.internal/ubuntu plucky/universe amd64 libinchi1.07 amd64 1.07.1+dfsg-6 [702 kB] 409s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 409s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 409s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-4 [3177 kB] 409s Get:26 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmaeparser1 amd64 1.3.1-1build1 [90.2 kB] 409s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libpq5 amd64 17.2-1 [153 kB] 409s Get:28 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 librdkit1t64 amd64 202409.4-1 [6193 kB] 409s Get:29 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 librdkit-dev amd64 202409.4-1 [346 kB] 409s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu2 [175 kB] 409s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 postgresql-client-17 amd64 17.2-1 [1405 kB] 409s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 postgresql-17 amd64 17.2-1 [16.5 MB] 410s Get:33 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 postgresql-17-rdkit amd64 202409.4-1 [124 kB] 410s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-12 [5319 kB] 410s Get:35 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 rdkit-data all 202409.4-1 [12.6 MB] 410s Get:36 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-rdkit amd64 202409.4-1 [4971 kB] 410s Get:37 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 rdkit-doc all 202409.4-1 [6325 kB] 411s Preconfiguring packages ... 411s Fetched 68.5 MB in 2s (29.3 MB/s) 411s Selecting previously unselected package libjson-perl. 411s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76534 files and directories currently installed.) 411s Preparing to unpack .../00-libjson-perl_4.10000-1_all.deb ... 411s Unpacking libjson-perl (4.10000-1) ... 411s Selecting previously unselected package libio-pty-perl. 411s Preparing to unpack .../01-libio-pty-perl_1%3a1.20-1build3_amd64.deb ... 411s Unpacking libio-pty-perl (1:1.20-1build3) ... 411s Selecting previously unselected package libipc-run-perl. 411s Preparing to unpack .../02-libipc-run-perl_20231003.0-2_all.deb ... 411s Unpacking libipc-run-perl (20231003.0-2) ... 411s Selecting previously unselected package postgresql-client-common. 411s Preparing to unpack .../03-postgresql-client-common_267_all.deb ... 411s Unpacking postgresql-client-common (267) ... 411s Selecting previously unselected package ssl-cert. 411s Preparing to unpack .../04-ssl-cert_1.1.3ubuntu1_all.deb ... 411s Unpacking ssl-cert (1.1.3ubuntu1) ... 411s Selecting previously unselected package postgresql-common. 411s Preparing to unpack .../05-postgresql-common_267_all.deb ... 411s Adding 'diversion of /usr/bin/pg_config to /usr/bin/pg_config.libpq-dev by postgresql-common' 411s Unpacking postgresql-common (267) ... 411s Selecting previously unselected package fonts-freefont-ttf. 411s Preparing to unpack .../06-fonts-freefont-ttf_20211204+svn4273-2_all.deb ... 411s Unpacking fonts-freefont-ttf (20211204+svn4273-2) ... 411s Selecting previously unselected package fontconfig-config. 411s Preparing to unpack .../07-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 411s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 412s Selecting previously unselected package libblas3:amd64. 412s Preparing to unpack .../08-libblas3_3.12.0-4_amd64.deb ... 412s Unpacking libblas3:amd64 (3.12.0-4) ... 412s Selecting previously unselected package libboost-iostreams1.83.0:amd64. 412s Preparing to unpack .../09-libboost-iostreams1.83.0_1.83.0-4ubuntu2_amd64.deb ... 412s Unpacking libboost-iostreams1.83.0:amd64 (1.83.0-4ubuntu2) ... 412s Selecting previously unselected package libboost-python1.83.0. 412s Preparing to unpack .../10-libboost-python1.83.0_1.83.0-4ubuntu2_amd64.deb ... 412s Unpacking libboost-python1.83.0 (1.83.0-4ubuntu2) ... 412s Selecting previously unselected package libboost-numpy1.83.0. 412s Preparing to unpack .../11-libboost-numpy1.83.0_1.83.0-4ubuntu2_amd64.deb ... 412s Unpacking libboost-numpy1.83.0 (1.83.0-4ubuntu2) ... 412s Selecting previously unselected package libboost-serialization1.83.0:amd64. 412s Preparing to unpack .../12-libboost-serialization1.83.0_1.83.0-4ubuntu2_amd64.deb ... 412s Unpacking libboost-serialization1.83.0:amd64 (1.83.0-4ubuntu2) ... 412s Selecting previously unselected package libfontconfig1:amd64. 412s Preparing to unpack .../13-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 412s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 412s Selecting previously unselected package libpixman-1-0:amd64. 412s Preparing to unpack .../14-libpixman-1-0_0.44.0-3_amd64.deb ... 412s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 412s Selecting previously unselected package libxcb-render0:amd64. 412s Preparing to unpack .../15-libxcb-render0_1.17.0-2_amd64.deb ... 412s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 412s Selecting previously unselected package libxcb-shm0:amd64. 412s Preparing to unpack .../16-libxcb-shm0_1.17.0-2_amd64.deb ... 412s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 412s Selecting previously unselected package libxrender1:amd64. 412s Preparing to unpack .../17-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 412s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 412s Selecting previously unselected package libcairo2:amd64. 412s Preparing to unpack .../18-libcairo2_1.18.2-2_amd64.deb ... 412s Unpacking libcairo2:amd64 (1.18.2-2) ... 412s Selecting previously unselected package libcoordgen3:amd64. 412s Preparing to unpack .../19-libcoordgen3_3.0.2-1_amd64.deb ... 412s Unpacking libcoordgen3:amd64 (3.0.2-1) ... 412s Selecting previously unselected package libgfortran5:amd64. 412s Preparing to unpack .../20-libgfortran5_14.2.0-13ubuntu1_amd64.deb ... 412s Unpacking libgfortran5:amd64 (14.2.0-13ubuntu1) ... 412s Selecting previously unselected package libinchi1.07. 412s Preparing to unpack .../21-libinchi1.07_1.07.1+dfsg-6_amd64.deb ... 412s Unpacking libinchi1.07 (1.07.1+dfsg-6) ... 412s Selecting previously unselected package libjs-jquery. 412s Preparing to unpack .../22-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 412s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 412s Selecting previously unselected package libjs-underscore. 412s Preparing to unpack .../23-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 412s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 412s Selecting previously unselected package liblapack3:amd64. 412s Preparing to unpack .../24-liblapack3_3.12.0-4_amd64.deb ... 412s Unpacking liblapack3:amd64 (3.12.0-4) ... 412s Selecting previously unselected package libmaeparser1:amd64. 412s Preparing to unpack .../25-libmaeparser1_1.3.1-1build1_amd64.deb ... 412s Unpacking libmaeparser1:amd64 (1.3.1-1build1) ... 412s Selecting previously unselected package libpq5:amd64. 412s Preparing to unpack .../26-libpq5_17.2-1_amd64.deb ... 412s Unpacking libpq5:amd64 (17.2-1) ... 412s Selecting previously unselected package librdkit1t64. 412s Preparing to unpack .../27-librdkit1t64_202409.4-1_amd64.deb ... 412s Unpacking librdkit1t64 (202409.4-1) ... 412s Selecting previously unselected package librdkit-dev. 412s Preparing to unpack .../28-librdkit-dev_202409.4-1_amd64.deb ... 412s Unpacking librdkit-dev (202409.4-1) ... 412s Selecting previously unselected package libxslt1.1:amd64. 412s Preparing to unpack .../29-libxslt1.1_1.1.39-0exp1ubuntu2_amd64.deb ... 412s Unpacking libxslt1.1:amd64 (1.1.39-0exp1ubuntu2) ... 413s Selecting previously unselected package postgresql-client-17. 413s Preparing to unpack .../30-postgresql-client-17_17.2-1_amd64.deb ... 413s Unpacking postgresql-client-17 (17.2-1) ... 413s Selecting previously unselected package postgresql-17. 413s Preparing to unpack .../31-postgresql-17_17.2-1_amd64.deb ... 413s Unpacking postgresql-17 (17.2-1) ... 413s Selecting previously unselected package postgresql-17-rdkit. 413s Preparing to unpack .../32-postgresql-17-rdkit_202409.4-1_amd64.deb ... 413s Unpacking postgresql-17-rdkit (202409.4-1) ... 413s Selecting previously unselected package python3-numpy. 413s Preparing to unpack .../33-python3-numpy_1%3a1.26.4+ds-12_amd64.deb ... 413s Unpacking python3-numpy (1:1.26.4+ds-12) ... 413s Selecting previously unselected package rdkit-data. 413s Preparing to unpack .../34-rdkit-data_202409.4-1_all.deb ... 413s Unpacking rdkit-data (202409.4-1) ... 413s Selecting previously unselected package python3-rdkit. 413s Preparing to unpack .../35-python3-rdkit_202409.4-1_amd64.deb ... 413s Unpacking python3-rdkit (202409.4-1) ... 414s Selecting previously unselected package rdkit-doc. 414s Preparing to unpack .../36-rdkit-doc_202409.4-1_all.deb ... 414s Unpacking rdkit-doc (202409.4-1) ... 414s Setting up libboost-python1.83.0 (1.83.0-4ubuntu2) ... 414s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 414s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 414s Setting up libio-pty-perl (1:1.20-1build3) ... 414s Setting up libxcb-render0:amd64 (1.17.0-2) ... 414s Setting up libpq5:amd64 (17.2-1) ... 414s Setting up fonts-freefont-ttf (20211204+svn4273-2) ... 414s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 414s Setting up rdkit-data (202409.4-1) ... 415s Setting up libboost-serialization1.83.0:amd64 (1.83.0-4ubuntu2) ... 415s Setting up libboost-numpy1.83.0 (1.83.0-4ubuntu2) ... 415s Setting up libblas3:amd64 (3.12.0-4) ... 415s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 415s Setting up ssl-cert (1.1.3ubuntu1) ... 415s Created symlink '/etc/systemd/system/multi-user.target.wants/ssl-cert.service' → '/usr/lib/systemd/system/ssl-cert.service'. 415s Setting up libboost-iostreams1.83.0:amd64 (1.83.0-4ubuntu2) ... 415s Setting up libipc-run-perl (20231003.0-2) ... 415s Setting up libgfortran5:amd64 (14.2.0-13ubuntu1) ... 415s Setting up libjson-perl (4.10000-1) ... 415s Setting up libxslt1.1:amd64 (1.1.39-0exp1ubuntu2) ... 415s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 415s Setting up libcoordgen3:amd64 (3.0.2-1) ... 415s Setting up libinchi1.07 (1.07.1+dfsg-6) ... 415s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 415s Setting up postgresql-client-common (267) ... 415s Setting up liblapack3:amd64 (3.12.0-4) ... 415s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 415s Setting up postgresql-client-17 (17.2-1) ... 416s update-alternatives: using /usr/share/postgresql/17/man/man1/psql.1.gz to provide /usr/share/man/man1/psql.1.gz (psql.1.gz) in auto mode 416s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 416s Setting up rdkit-doc (202409.4-1) ... 416s Setting up libmaeparser1:amd64 (1.3.1-1build1) ... 416s Setting up postgresql-common (267) ... 416s Creating config file /etc/postgresql-common/createcluster.conf with new version 416s Building PostgreSQL dictionaries from installed myspell/hunspell packages... 416s Removing obsolete dictionary files: 417s Created symlink '/etc/systemd/system/multi-user.target.wants/postgresql.service' → '/usr/lib/systemd/system/postgresql.service'. 417s Setting up python3-numpy (1:1.26.4+ds-12) ... 419s Setting up libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 419s Setting up postgresql-17 (17.2-1) ... 419s Creating new PostgreSQL cluster 17/main ... 419s /usr/lib/postgresql/17/bin/initdb -D /var/lib/postgresql/17/main --auth-local peer --auth-host scram-sha-256 --no-instructions 419s The files belonging to this database system will be owned by user "postgres". 419s This user must also own the server process. 419s 419s The database cluster will be initialized with locale "C.UTF-8". 419s The default database encoding has accordingly been set to "UTF8". 419s The default text search configuration will be set to "english". 419s 419s Data page checksums are disabled. 419s 419s fixing permissions on existing directory /var/lib/postgresql/17/main ... ok 419s creating subdirectories ... ok 419s selecting dynamic shared memory implementation ... posix 419s selecting default "max_connections" ... 100 419s selecting default "shared_buffers" ... 128MB 419s selecting default time zone ... Etc/UTC 419s creating configuration files ... ok 419s running bootstrap script ... ok 419s performing post-bootstrap initialization ... ok 419s syncing data to disk ... ok 423s Setting up libcairo2:amd64 (1.18.2-2) ... 423s Setting up librdkit1t64 (202409.4-1) ... 423s Setting up postgresql-17-rdkit (202409.4-1) ... 423s Setting up python3-rdkit (202409.4-1) ... 423s Setting up librdkit-dev (202409.4-1) ... 423s Processing triggers for man-db (2.13.0-1) ... 425s Processing triggers for libc-bin (2.40-4ubuntu1) ... 438s autopkgtest [04:37:43]: test importcheck: [----------------------- 439s autopkgtest [04:37:44]: test importcheck: -----------------------] 439s importcheck PASS 439s autopkgtest [04:37:44]: test importcheck: - - - - - - - - - - results - - - - - - - - - - 440s autopkgtest [04:37:45]: @@@@@@@@@@@@@@@@@@@@ summary 440s installcheck PASS 440s importcheck PASS 456s nova [W] Skipping flock for amd64 456s Creating nova instance adt-plucky-amd64-rdkit-20250117-043025-juju-7f2275-prod-proposed-migration-environment-15-3642bf6c-6a13-4311-93e7-55259a5d330e from image adt/ubuntu-plucky-amd64-server-20250117.img (UUID 8f35863a-398a-4b7d-9594-544c7b7656c3)... 456s nova [W] Timed out waiting for c66a05b2-2867-4d27-a91d-57f5b53f392d to get deleted. 456s nova [W] Skipping flock for amd64 456s Creating nova instance adt-plucky-amd64-rdkit-20250117-043025-juju-7f2275-prod-proposed-migration-environment-15-3642bf6c-6a13-4311-93e7-55259a5d330e from image adt/ubuntu-plucky-amd64-server-20250117.img (UUID 8f35863a-398a-4b7d-9594-544c7b7656c3)... 456s nova [W] Timed out waiting for 089ae438-ed52-4470-9cc4-e5eb520dbf5c to get deleted.