0s autopkgtest [19:26:54]: starting date and time: 2025-02-03 19:26:54+0000 0s autopkgtest [19:26:54]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [19:26:54]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.2s9yfwkk/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-testthat --apt-upgrade r-cran-stars --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-testthat/3.2.3-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@lcy02-1.secgroup --name adt-plucky-amd64-r-cran-stars-20250203-192653-juju-7f2275-prod-proposed-migration-environment-15-7b9ebd13-252c-4af9-bafc-7b6295ea7a67 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 54s autopkgtest [19:27:48]: testbed dpkg architecture: amd64 54s autopkgtest [19:27:48]: testbed apt version: 2.9.18 54s autopkgtest [19:27:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup 54s autopkgtest [19:27:48]: testbed release detected to be: None 54s autopkgtest [19:27:48]: updating testbed package index (apt update) 54s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 54s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 54s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 54s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 54s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 54s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [884 kB] 54s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.4 kB] 54s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [125 kB] 54s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [95.5 kB] 54s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [299 kB] 54s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [832 kB] 54s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [1328 B] 54s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [7208 B] 55s Fetched 2446 kB in 0s (5858 kB/s) 56s Reading package lists... 56s + lsb_release --codename --short 56s + RELEASE=plucky 56s + cat 56s + [ plucky != trusty ] 56s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 56s Reading package lists... 56s Building dependency tree... 56s Reading state information... 57s Calculating upgrade... 57s The following packages will be upgraded: 57s initramfs-tools initramfs-tools-bin initramfs-tools-core 57s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 57s Need to get 84.0 kB of archives. 57s After this operation, 9216 B of additional disk space will be used. 57s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.145ubuntu1 [7942 B] 57s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.145ubuntu1 [51.2 kB] 57s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.145ubuntu1 [24.8 kB] 57s Fetched 84.0 kB in 0s (4363 kB/s) 58s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108876 files and directories currently installed.) 58s Preparing to unpack .../initramfs-tools_0.145ubuntu1_all.deb ... 58s Unpacking initramfs-tools (0.145ubuntu1) over (0.142ubuntu35) ... 58s Preparing to unpack .../initramfs-tools-core_0.145ubuntu1_all.deb ... 58s Unpacking initramfs-tools-core (0.145ubuntu1) over (0.142ubuntu35) ... 58s Preparing to unpack .../initramfs-tools-bin_0.145ubuntu1_amd64.deb ... 58s Unpacking initramfs-tools-bin (0.145ubuntu1) over (0.142ubuntu35) ... 58s Setting up initramfs-tools-bin (0.145ubuntu1) ... 58s Setting up initramfs-tools-core (0.145ubuntu1) ... 58s Setting up initramfs-tools (0.145ubuntu1) ... 58s update-initramfs: deferring update (trigger activated) 58s Processing triggers for man-db (2.13.0-1) ... 59s Processing triggers for initramfs-tools (0.145ubuntu1) ... 59s update-initramfs: Generating /boot/initrd.img-6.12.0-12-generic 59s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 69s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 69s + /usr/lib/apt/apt-helper analyze-pattern ?true 69s + uname -r 69s + sed s/\./\\./g 69s + running_kernel_pattern=^linux-.*6\.12\.0-12-generic.* 69s + apt list ?obsolete 69s + tail -n+2 69s + grep+ cut -d/ -f1 69s -v ^linux-.*6\.12\.0-12-generic.* 70s + true 70s + obsolete_pkgs= 70s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove 70s Reading package lists... 70s Building dependency tree... 70s Reading state information... 70s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 70s + grep -q trusty /etc/lsb-release 70s + [ ! -d /usr/share/doc/unattended-upgrades ] 70s + [ ! -d /usr/share/doc/lxd ] 70s + [ ! -d /usr/share/doc/lxd-client ] 70s + [ ! -d /usr/share/doc/snapd ] 70s + type iptables 70s + cat 70s + chmod 755 /etc/rc.local 70s + . /etc/rc.local 70s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 70s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 70s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 70s + uname -m 70s + [ x86_64 = ppc64le ] 70s + [ -d /run/systemd/system ] 70s + systemd-detect-virt --quiet --vm 70s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 70s + cat 70s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 70s + echo COMPRESS=lz4 70s autopkgtest [19:28:04]: upgrading testbed (apt dist-upgrade and autopurge) 70s Reading package lists... 71s Building dependency tree... 71s Reading state information... 71s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 71s Starting 2 pkgProblemResolver with broken count: 0 71s Done 72s Entering ResolveByKeep 72s 72s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 72s Reading package lists... 72s Building dependency tree... 72s Reading state information... 73s Starting pkgProblemResolver with broken count: 0 73s Starting 2 pkgProblemResolver with broken count: 0 73s Done 73s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 73s autopkgtest [19:28:07]: rebooting testbed after setup commands that affected boot 77s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 91s autopkgtest [19:28:25]: testbed running kernel: Linux 6.12.0-12-generic #12-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 22 16:36:37 UTC 2025 92s autopkgtest [19:28:26]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-stars 93s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-stars 0.6-7-1 (dsc) [2749 B] 93s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-stars 0.6-7-1 (tar) [4034 kB] 93s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-stars 0.6-7-1 (diff) [4392 B] 93s gpgv: Signature made Thu Jan 23 02:23:45 2025 UTC 93s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 93s gpgv: issuer "plessy@debian.org" 93s gpgv: Can't check signature: No public key 93s dpkg-source: warning: cannot verify inline signature for ./r-cran-stars_0.6-7-1.dsc: no acceptable signature found 93s autopkgtest [19:28:27]: testing package r-cran-stars version 0.6-7-1 94s autopkgtest [19:28:28]: build not needed 99s autopkgtest [19:28:33]: test run-unit-test: preparing testbed 99s Reading package lists... 99s Building dependency tree... 99s Reading state information... 99s Starting pkgProblemResolver with broken count: 0 100s Starting 2 pkgProblemResolver with broken count: 0 100s Done 100s The following NEW packages will be installed: 100s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 100s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gdal-data 100s gdal-plugins javascript-common libabsl20230802 libaec0 libaom3 100s libarmadillo14 libarpack2t64 libavif16 libblas3 libblosc1 libcairo2 100s libcfitsio10t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libfontconfig1 100s libfreexl1 libfyba0t64 libgav1-1 libgdal36 libgeos-c1t64 libgeos3.13.0 100s libgeotiff5 libgfortran5 libgif7 libgomp1 libgpgmepp6t64 libgraphite2-3 100s libharfbuzz0b libhdf4-0-alt libhdf5-310 libhdf5-hl-310 libheif-plugin-aomdec 100s libheif-plugin-libde265 libheif1 libice6 libjbig0 libjpeg-turbo8 libjpeg8 100s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 100s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 100s libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js 100s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 100s libjs-twitter-bootstrap-datepicker libkmlbase1t64 libkmldom1t64 100s libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 libltdl7 liblua5.4-0 100s libminizip1t64 libmysqlclient24 libnetcdf19t64 libodbc2 libodbcinst2 100s libogdi4.1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 100s libpaper-utils libpaper2 libpixman-1-0 libpoppler145 libpq5 libproj25 100s libqhull-r8.0 librav1e0.7 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 100s libspatialite8t64 libsvtav1enc2 libsz2 libtcl8.6 libthai-data libthai0 100s libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 libwebp7 100s libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 100s libxt6t64 libyuv0 littler mysql-common node-bootstrap-sass node-html5shiv 100s node-normalize.css pandoc pandoc-data proj-data r-base-core r-cran-abind 100s r-cran-areal r-cran-askpass r-cran-base64enc r-cran-bdsmatrix r-cran-brio 100s r-cran-bslib r-cran-cachem r-cran-cairo r-cran-callr r-cran-class 100s r-cran-classint r-cran-cli r-cran-clue r-cran-cluster r-cran-codetools 100s r-cran-collapse r-cran-colorspace r-cran-commonmark r-cran-covr r-cran-cpp11 100s r-cran-crayon r-cran-cubelyr r-cran-curl r-cran-dbi r-cran-deldir 100s r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 100s r-cran-evaluate r-cran-exactextractr r-cran-fansi r-cran-farver 100s r-cran-fastmap r-cran-fnn r-cran-fontawesome r-cran-formula r-cran-fs 100s r-cran-future r-cran-future.apply r-cran-generics r-cran-ggforce 100s r-cran-ggplot2 r-cran-ggthemes r-cran-globals r-cran-glue r-cran-goftest 100s r-cran-gridextra r-cran-gstat r-cran-gtable r-cran-highr r-cran-htmltools 100s r-cran-httpuv r-cran-httr r-cran-intervals r-cran-isoband r-cran-jquerylib 100s r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later 100s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-listenv 100s r-cran-littler r-cran-lmtest r-cran-lwgeom r-cran-magrittr r-cran-mapdata 100s r-cran-maps r-cran-mass r-cran-matrix r-cran-maxlik r-cran-memoise 100s r-cran-mgcv r-cran-mime r-cran-misctools r-cran-munsell r-cran-ncdfgeom 100s r-cran-ncmeta r-cran-nlme r-cran-openssl r-cran-parallelly r-cran-pbapply 100s r-cran-pcict r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 100s r-cran-pkgload r-cran-plm r-cran-polyclip r-cran-praise r-cran-processx 100s r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr r-cran-r6 100s r-cran-randomforest r-cran-rappdirs r-cran-raster r-cran-rbibutils 100s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rdpack r-cran-rex 100s r-cran-rlang r-cran-rmarkdown r-cran-rnetcdf r-cran-rpart r-cran-rprojroot 100s r-cran-s2 r-cran-sandwich r-cran-sass r-cran-scales r-cran-sf r-cran-sftime 100s r-cran-shiny r-cran-sourcetools r-cran-sp r-cran-spacetime r-cran-spatstat 100s r-cran-spatstat.data r-cran-spatstat.explore r-cran-spatstat.geom 100s r-cran-spatstat.linnet r-cran-spatstat.model r-cran-spatstat.random 100s r-cran-spatstat.sparse r-cran-spatstat.utils r-cran-stars r-cran-stringi 100s r-cran-stringr r-cran-survival r-cran-sys r-cran-systemfonts r-cran-tensor 100s r-cran-terra r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 100s r-cran-tinytex r-cran-tweenr r-cran-units r-cran-utf8 r-cran-vctrs 100s r-cran-viridis r-cran-viridislite r-cran-waldo r-cran-withr r-cran-wk 100s r-cran-xfun r-cran-xtable r-cran-xts r-cran-yaml r-cran-zoo unixodbc-common 100s unzip x11-common xdg-utils zip 100s 0 upgraded, 292 newly installed, 0 to remove and 0 not upgraded. 100s Need to get 299 MB of archives. 100s After this operation, 786 MB of additional disk space will be used. 100s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 100s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 100s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 100s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 100s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 100s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 101s Get:7 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 101s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 101s Get:9 http://ftpmaster.internal/ubuntu plucky/universe amd64 gdal-data all 3.10.1+dfsg-1build2 [269 kB] 101s Get:10 http://ftpmaster.internal/ubuntu plucky/universe amd64 gdal-plugins amd64 3.10.1+dfsg-1build2 [25.6 kB] 101s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 11+nmu1 [5936 B] 101s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libabsl20230802 amd64 20230802.1-4ubuntu2 [563 kB] 101s Get:13 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 101s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libaom3 amd64 3.11.0-1 [2761 kB] 101s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-4 [332 kB] 101s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-13ubuntu1 [909 kB] 101s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-4 [3177 kB] 101s Get:18 http://ftpmaster.internal/ubuntu plucky/universe amd64 libarpack2t64 amd64 3.9.1-4 [120 kB] 101s Get:19 http://ftpmaster.internal/ubuntu plucky/universe amd64 libarmadillo14 amd64 1:14.2.1+dfsg-1 [105 kB] 101s Get:20 http://ftpmaster.internal/ubuntu plucky/universe amd64 libdav1d7 amd64 1.5.1-1 [743 kB] 101s Get:21 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgav1-1 amd64 0.19.0-3 [697 kB] 101s Get:22 http://ftpmaster.internal/ubuntu plucky/universe amd64 librav1e0.7 amd64 0.7.1-9 [1025 kB] 101s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2686 kB] 101s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 101s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 101s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libyuv0 amd64 0.0.1899.20250103-1 [352 kB] 101s Get:27 http://ftpmaster.internal/ubuntu plucky/universe amd64 libavif16 amd64 1.1.1-1ubuntu1 [113 kB] 101s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libsnappy1v5 amd64 1.2.1-1 [30.4 kB] 101s Get:29 http://ftpmaster.internal/ubuntu plucky/universe amd64 libblosc1 amd64 1.21.5+ds-1build1 [36.2 kB] 101s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 101s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 101s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 101s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 101s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 101s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcfitsio10t64 amd64 4.5.0-5 [629 kB] 101s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 101s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libde265-0 amd64 1.0.15-1build4 [168 kB] 101s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 101s Get:39 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfyba0t64 amd64 4.1.1-11build1 [119 kB] 101s Get:40 http://ftpmaster.internal/ubuntu plucky/universe amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [22.9 kB] 101s Get:41 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfreexl1 amd64 2.0.0-1build2 [41.7 kB] 101s Get:42 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeos3.13.0 amd64 3.13.0-1 [1017 kB] 101s Get:43 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeos-c1t64 amd64 3.13.0-1 [103 kB] 101s Get:44 http://ftpmaster.internal/ubuntu plucky/universe amd64 proj-data all 9.5.1-1 [7924 kB] 101s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 101s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 101s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 101s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 101s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 101s Get:50 http://ftpmaster.internal/ubuntu plucky/universe amd64 libproj25 amd64 9.5.1-1 [1499 kB] 101s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeotiff5 amd64 1.7.3-1 [63.0 kB] 101s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libgif7 amd64 5.2.2-1ubuntu1 [35.2 kB] 101s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 101s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf4-0-alt amd64 4.3.0-1 [285 kB] 101s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 101s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-aomdec amd64 1.19.5-1build1 [11.6 kB] 101s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-libde265 amd64 1.19.5-1build1 [9074 B] 101s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif1 amd64 1.19.5-1build1 [422 kB] 101s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 liburiparser1 amd64 0.9.8+dfsg-2 [46.8 kB] 101s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmlbase1t64 amd64 1.3.0-12build1 [49.9 kB] 101s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmldom1t64 amd64 1.3.0-12build1 [156 kB] 101s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmlengine1t64 amd64 1.3.0-12build1 [71.4 kB] 101s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 mysql-common all 5.8+1.1.1 [6800 B] 101s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libmysqlclient24 amd64 8.4.4-0ubuntu1 [1256 kB] 101s Get:65 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 101s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf19t64 amd64 1:4.9.2-6ubuntu2 [531 kB] 101s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libltdl7 amd64 2.5.4-2.1 [46.1 kB] 101s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libodbc2 amd64 2.3.12-2ubuntu1 [186 kB] 101s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 unixodbc-common all 2.3.12-2ubuntu1 [9044 B] 101s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libodbcinst2 amd64 2.3.12-2ubuntu1 [34.1 kB] 101s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libogdi4.1 amd64 4.1.1+ds-5 [219 kB] 101s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu3 [217 kB] 101s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgmepp6t64 amd64 1.24.1-2ubuntu1 [126 kB] 101s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 101s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libpoppler145 amd64 25.01.0-2 [1280 kB] 101s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libpq5 amd64 17.2-1build2 [153 kB] 101s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 101s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 librttopo1 amd64 1.1.0-3build2 [191 kB] 101s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libspatialite8t64 amd64 5.1.0-3build1 [1919 kB] 101s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3build1 [1028 kB] 101s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgdal36 amd64 3.10.1+dfsg-1build2 [10.2 MB] 101s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-13ubuntu1 [148 kB] 101s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 101s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 101s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 101s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 101s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 101s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 101s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 101s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 101s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 101s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 101s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 101s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 101s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 101s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 101s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 101s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 101s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 101s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 101s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 101s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 101s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 101s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.1-1 [255 kB] 101s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.1-1 [52.6 kB] 101s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.1-1 [29.1 kB] 101s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 101s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 101s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 101s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 101s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 101s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 101s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 101s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 libudunits2-data all 2.2.28-7build1 [19.4 kB] 101s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 libudunits2-0 amd64 2.2.28-7build1 [54.1 kB] 101s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 101s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 101s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 101s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-0ubuntu1 [67.5 kB] 101s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.2-1build1 [28.9 MB] 101s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 101s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 101s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 101s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 101s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 101s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 101s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 102s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 102s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.3-1 [1348 kB] 102s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 102s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 102s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 102s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 102s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 102s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 102s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 102s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 102s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 102s Get:139 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 102s Get:140 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 102s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 102s Get:142 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 102s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 102s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 102s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 102s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 102s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 102s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 102s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-e1071 amd64 1.7-16-1 [565 kB] 102s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernsmooth amd64 2.23-26-1 [94.5 kB] 102s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-classint amd64 0.4-11+dfsg-1 [108 kB] 102s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 102s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 102s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 102s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-wk amd64 0.9.4-1 [1791 kB] 102s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-s2 amd64 1.1.7-1 [2023 kB] 102s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-units amd64 0.8-5+dfsg-1 [275 kB] 102s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sf amd64 1.0-19+dfsg-1 [3313 kB] 102s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-areal all 0.1.8+dfsg-2 [1004 kB] 102s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 102s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 102s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 102s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bdsmatrix amd64 1.3-7-1 [299 kB] 102s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 102s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 102s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 102s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 102s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 102s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 102s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.8.9+dfsg-1 [445 kB] 102s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 102s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 102s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 102s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 102s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 102s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 102s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cairo amd64 1.6-2-1 [88.8 kB] 102s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.8.1-1 [397 kB] 102s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.5-1 [356 kB] 102s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 102s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cluster amd64 2.1.8-1 [579 kB] 102s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-clue amd64 0.3-66-1 [968 kB] 102s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 102s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-collapse amd64 2.0.19-1 [3476 kB] 102s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 102s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 102s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 102s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rex all 1.2.1-1 [129 kB] 102s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 6.1.0+dfsg-1 [195 kB] 102s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.2.0+dfsg-1 [405 kB] 102s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 102s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 102s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 102s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-covr amd64 3.6.4+dfsg-1 [303 kB] 102s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.1-1 [233 kB] 102s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cubelyr all 1.0.2-1 [347 kB] 102s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 102s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 102s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 102s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 102s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 102s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sp amd64 1:2.1-4+dfsg-1 [1472 kB] 102s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-terra amd64 1.8-10-1 [4257 kB] 102s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-raster amd64 3.6-31-1 [3176 kB] 102s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-exactextractr amd64 0.10.0-1build2 [578 kB] 102s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 102s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB] 102s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 102s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 102s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-globals all 0.16.3-1 [120 kB] 102s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 102s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-parallelly amd64 1.41.0-1 [507 kB] 102s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 102s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future.apply all 1.11.3+dfsg-1 [175 kB] 102s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 102s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 102s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.167-1 [2320 kB] 102s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-2-1 [4456 kB] 102s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 102s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 102s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB] 102s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 102s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 102s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 102s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 102s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tweenr amd64 2.0.3-1 [410 kB] 102s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB] 102s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-systemfonts amd64 1.2.1-1 [347 kB] 102s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 102s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggforce amd64 0.4.2-1 [1777 kB] 102s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB] 102s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 102s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggthemes all 5.1.0-1 [434 kB] 102s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-goftest amd64 1.2-3-1 [59.5 kB] 102s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 102s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-zoo amd64 1.8-12-2 [984 kB] 102s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sftime all 0.2-0-6 [168 kB] 102s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xts amd64 0.14.1-1 [1198 kB] 102s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-intervals amd64 0.15.5-1 [602 kB] 102s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spacetime all 1.3-2-2 [2775 kB] 102s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stars all 0.6-7-1 [4411 kB] 102s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gstat amd64 2.1-2-1 [2335 kB] 102s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.50+dfsg-1 [568 kB] 102s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 102s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 102s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 102s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 102s Get:248 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 102s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 102s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lmtest amd64 0.9.40-1 [396 kB] 102s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lwgeom amd64 0.2-14-1 [463 kB] 102s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-maps amd64 3.4.2-1 [2359 kB] 102s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mapdata amd64 2.3.1-1 [23.5 MB] 103s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-misctools all 0.6-28-1 [99.9 kB] 103s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sandwich all 3.1-1-1 [1483 kB] 103s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-maxlik all 1.5-2.1-1 [1083 kB] 103s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rnetcdf amd64 2.9-1-1build2 [233 kB] 103s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 103s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ncmeta all 0.3.6-1 [360 kB] 103s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ncdfgeom all 1.1.6+dfsg-1 [4124 kB] 103s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 103s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pcict amd64 0.5-4.4-1 [94.4 kB] 103s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 103s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-2 [125 kB] 103s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 103s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rbibutils amd64 2.3-1 [1023 kB] 103s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rdpack all 2.6.2-1 [757 kB] 103s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plm all 2.6-5-1 [1815 kB] 103s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 103s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-randomforest amd64 4.7-1.2-1 [216 kB] 103s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.54-1 [147 kB] 103s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 103s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 103s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 103s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 103s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.9.1+dfsg-1 [3111 kB] 103s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 103s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB] 103s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB] 103s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.utils amd64 3.1-2-1 [383 kB] 103s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.data all 3.1-4-1 [4047 kB] 103s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.geom amd64 3.2-9-2 [3946 kB] 103s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.random amd64 3.2-3-1 [1169 kB] 103s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tensor all 1.5-4 [15.7 kB] 103s Get:285 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.sparse amd64 3.1-0-1 [221 kB] 103s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.explore amd64 3.2-7-1 [3432 kB] 103s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.model amd64 3.2-11-1 [3385 kB] 103s Get:288 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.linnet amd64 3.1-5-1 [1468 kB] 103s Get:289 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat amd64 3.0-8-1 [3881 kB] 103s Get:290 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-1 [150 kB] 103s Get:291 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 103s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 104s Preconfiguring packages ... 104s Fetched 299 MB in 3s (116 MB/s) 104s Selecting previously unselected package fonts-dejavu-mono. 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108876 files and directories currently installed.) 104s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8_all.deb ... 104s Unpacking fonts-dejavu-mono (2.37-8) ... 104s Selecting previously unselected package fonts-dejavu-core. 104s Preparing to unpack .../001-fonts-dejavu-core_2.37-8_all.deb ... 104s Unpacking fonts-dejavu-core (2.37-8) ... 104s Selecting previously unselected package fontconfig-config. 104s Preparing to unpack .../002-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 105s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 105s Selecting previously unselected package libfontconfig1:amd64. 105s Preparing to unpack .../003-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 105s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 105s Selecting previously unselected package fontconfig. 105s Preparing to unpack .../004-fontconfig_2.15.0-1.1ubuntu2_amd64.deb ... 105s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 105s Selecting previously unselected package fonts-font-awesome. 105s Preparing to unpack .../005-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 105s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 105s Selecting previously unselected package fonts-glyphicons-halflings. 105s Preparing to unpack .../006-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 105s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 105s Selecting previously unselected package fonts-mathjax. 105s Preparing to unpack .../007-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 105s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 105s Selecting previously unselected package gdal-data. 105s Preparing to unpack .../008-gdal-data_3.10.1+dfsg-1build2_all.deb ... 105s Unpacking gdal-data (3.10.1+dfsg-1build2) ... 105s Selecting previously unselected package gdal-plugins:amd64. 105s Preparing to unpack .../009-gdal-plugins_3.10.1+dfsg-1build2_amd64.deb ... 105s Unpacking gdal-plugins:amd64 (3.10.1+dfsg-1build2) ... 105s Selecting previously unselected package javascript-common. 105s Preparing to unpack .../010-javascript-common_11+nmu1_all.deb ... 105s Unpacking javascript-common (11+nmu1) ... 105s Selecting previously unselected package libabsl20230802:amd64. 105s Preparing to unpack .../011-libabsl20230802_20230802.1-4ubuntu2_amd64.deb ... 105s Unpacking libabsl20230802:amd64 (20230802.1-4ubuntu2) ... 105s Selecting previously unselected package libaec0:amd64. 105s Preparing to unpack .../012-libaec0_1.1.3-1_amd64.deb ... 105s Unpacking libaec0:amd64 (1.1.3-1) ... 105s Selecting previously unselected package libaom3:amd64. 105s Preparing to unpack .../013-libaom3_3.11.0-1_amd64.deb ... 105s Unpacking libaom3:amd64 (3.11.0-1) ... 105s Selecting previously unselected package libblas3:amd64. 105s Preparing to unpack .../014-libblas3_3.12.0-4_amd64.deb ... 105s Unpacking libblas3:amd64 (3.12.0-4) ... 105s Selecting previously unselected package libgfortran5:amd64. 105s Preparing to unpack .../015-libgfortran5_14.2.0-13ubuntu1_amd64.deb ... 105s Unpacking libgfortran5:amd64 (14.2.0-13ubuntu1) ... 105s Selecting previously unselected package liblapack3:amd64. 105s Preparing to unpack .../016-liblapack3_3.12.0-4_amd64.deb ... 105s Unpacking liblapack3:amd64 (3.12.0-4) ... 105s Selecting previously unselected package libarpack2t64:amd64. 105s Preparing to unpack .../017-libarpack2t64_3.9.1-4_amd64.deb ... 105s Unpacking libarpack2t64:amd64 (3.9.1-4) ... 105s Selecting previously unselected package libarmadillo14. 106s Preparing to unpack .../018-libarmadillo14_1%3a14.2.1+dfsg-1_amd64.deb ... 106s Unpacking libarmadillo14 (1:14.2.1+dfsg-1) ... 106s Selecting previously unselected package libdav1d7:amd64. 106s Preparing to unpack .../019-libdav1d7_1.5.1-1_amd64.deb ... 106s Unpacking libdav1d7:amd64 (1.5.1-1) ... 106s Selecting previously unselected package libgav1-1:amd64. 106s Preparing to unpack .../020-libgav1-1_0.19.0-3_amd64.deb ... 106s Unpacking libgav1-1:amd64 (0.19.0-3) ... 106s Selecting previously unselected package librav1e0.7:amd64. 106s Preparing to unpack .../021-librav1e0.7_0.7.1-9_amd64.deb ... 106s Unpacking librav1e0.7:amd64 (0.7.1-9) ... 106s Selecting previously unselected package libsvtav1enc2:amd64. 106s Preparing to unpack .../022-libsvtav1enc2_2.3.0+dfsg-1_amd64.deb ... 106s Unpacking libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... 106s Selecting previously unselected package libjpeg-turbo8:amd64. 106s Preparing to unpack .../023-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 106s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 106s Selecting previously unselected package libjpeg8:amd64. 106s Preparing to unpack .../024-libjpeg8_8c-2ubuntu11_amd64.deb ... 106s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 106s Selecting previously unselected package libyuv0:amd64. 106s Preparing to unpack .../025-libyuv0_0.0.1899.20250103-1_amd64.deb ... 106s Unpacking libyuv0:amd64 (0.0.1899.20250103-1) ... 106s Selecting previously unselected package libavif16:amd64. 106s Preparing to unpack .../026-libavif16_1.1.1-1ubuntu1_amd64.deb ... 106s Unpacking libavif16:amd64 (1.1.1-1ubuntu1) ... 106s Selecting previously unselected package libsnappy1v5:amd64. 106s Preparing to unpack .../027-libsnappy1v5_1.2.1-1_amd64.deb ... 106s Unpacking libsnappy1v5:amd64 (1.2.1-1) ... 106s Selecting previously unselected package libblosc1:amd64. 106s Preparing to unpack .../028-libblosc1_1.21.5+ds-1build1_amd64.deb ... 106s Unpacking libblosc1:amd64 (1.21.5+ds-1build1) ... 106s Selecting previously unselected package libpixman-1-0:amd64. 106s Preparing to unpack .../029-libpixman-1-0_0.44.0-3_amd64.deb ... 106s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 106s Selecting previously unselected package libxcb-render0:amd64. 106s Preparing to unpack .../030-libxcb-render0_1.17.0-2_amd64.deb ... 106s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 106s Selecting previously unselected package libxcb-shm0:amd64. 106s Preparing to unpack .../031-libxcb-shm0_1.17.0-2_amd64.deb ... 106s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 106s Selecting previously unselected package libxrender1:amd64. 106s Preparing to unpack .../032-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 106s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 106s Selecting previously unselected package libcairo2:amd64. 106s Preparing to unpack .../033-libcairo2_1.18.2-2_amd64.deb ... 106s Unpacking libcairo2:amd64 (1.18.2-2) ... 106s Selecting previously unselected package libcfitsio10t64:amd64. 106s Preparing to unpack .../034-libcfitsio10t64_4.5.0-5_amd64.deb ... 106s Unpacking libcfitsio10t64:amd64 (4.5.0-5) ... 106s Selecting previously unselected package libdatrie1:amd64. 106s Preparing to unpack .../035-libdatrie1_0.2.13-3build1_amd64.deb ... 106s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 106s Selecting previously unselected package libde265-0:amd64. 106s Preparing to unpack .../036-libde265-0_1.0.15-1build4_amd64.deb ... 106s Unpacking libde265-0:amd64 (1.0.15-1build4) ... 106s Selecting previously unselected package libdeflate0:amd64. 106s Preparing to unpack .../037-libdeflate0_1.23-1_amd64.deb ... 106s Unpacking libdeflate0:amd64 (1.23-1) ... 106s Selecting previously unselected package libfyba0t64:amd64. 106s Preparing to unpack .../038-libfyba0t64_4.1.1-11build1_amd64.deb ... 106s Unpacking libfyba0t64:amd64 (4.1.1-11build1) ... 106s Selecting previously unselected package libminizip1t64:amd64. 106s Preparing to unpack .../039-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 106s Unpacking libminizip1t64:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 106s Selecting previously unselected package libfreexl1:amd64. 106s Preparing to unpack .../040-libfreexl1_2.0.0-1build2_amd64.deb ... 106s Unpacking libfreexl1:amd64 (2.0.0-1build2) ... 106s Selecting previously unselected package libgeos3.13.0:amd64. 106s Preparing to unpack .../041-libgeos3.13.0_3.13.0-1_amd64.deb ... 106s Unpacking libgeos3.13.0:amd64 (3.13.0-1) ... 106s Selecting previously unselected package libgeos-c1t64:amd64. 106s Preparing to unpack .../042-libgeos-c1t64_3.13.0-1_amd64.deb ... 106s Unpacking libgeos-c1t64:amd64 (3.13.0-1) ... 107s Selecting previously unselected package proj-data. 107s Preparing to unpack .../043-proj-data_9.5.1-1_all.deb ... 107s Unpacking proj-data (9.5.1-1) ... 107s Selecting previously unselected package libjbig0:amd64. 107s Preparing to unpack .../044-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 107s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 107s Selecting previously unselected package liblerc4:amd64. 107s Preparing to unpack .../045-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 107s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 107s Selecting previously unselected package libsharpyuv0:amd64. 107s Preparing to unpack .../046-libsharpyuv0_1.5.0-0.1_amd64.deb ... 107s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 107s Selecting previously unselected package libwebp7:amd64. 107s Preparing to unpack .../047-libwebp7_1.5.0-0.1_amd64.deb ... 107s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 107s Selecting previously unselected package libtiff6:amd64. 107s Preparing to unpack .../048-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 107s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 107s Selecting previously unselected package libproj25:amd64. 107s Preparing to unpack .../049-libproj25_9.5.1-1_amd64.deb ... 107s Unpacking libproj25:amd64 (9.5.1-1) ... 107s Selecting previously unselected package libgeotiff5:amd64. 107s Preparing to unpack .../050-libgeotiff5_1.7.3-1_amd64.deb ... 107s Unpacking libgeotiff5:amd64 (1.7.3-1) ... 107s Selecting previously unselected package libgif7:amd64. 107s Preparing to unpack .../051-libgif7_5.2.2-1ubuntu1_amd64.deb ... 107s Unpacking libgif7:amd64 (5.2.2-1ubuntu1) ... 107s Selecting previously unselected package libsz2:amd64. 107s Preparing to unpack .../052-libsz2_1.1.3-1_amd64.deb ... 107s Unpacking libsz2:amd64 (1.1.3-1) ... 107s Selecting previously unselected package libhdf4-0-alt:amd64. 107s Preparing to unpack .../053-libhdf4-0-alt_4.3.0-1_amd64.deb ... 107s Unpacking libhdf4-0-alt:amd64 (4.3.0-1) ... 107s Selecting previously unselected package libhdf5-310:amd64. 107s Preparing to unpack .../054-libhdf5-310_1.14.5+repack-3_amd64.deb ... 107s Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ... 107s Selecting previously unselected package libheif-plugin-aomdec:amd64. 107s Preparing to unpack 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previously unselected package libqhull-r8.0:amd64. 108s Preparing to unpack .../076-libqhull-r8.0_2020.2-6build1_amd64.deb ... 108s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 108s Selecting previously unselected package librttopo1:amd64. 108s Preparing to unpack .../077-librttopo1_1.1.0-3build2_amd64.deb ... 108s Unpacking librttopo1:amd64 (1.1.0-3build2) ... 108s Selecting previously unselected package libspatialite8t64:amd64. 108s Preparing to unpack .../078-libspatialite8t64_5.1.0-3build1_amd64.deb ... 108s Unpacking libspatialite8t64:amd64 (5.1.0-3build1) ... 108s Selecting previously unselected package libxerces-c3.2t64:amd64. 108s Preparing to unpack .../079-libxerces-c3.2t64_3.2.4+debian-1.3build1_amd64.deb ... 108s Unpacking libxerces-c3.2t64:amd64 (3.2.4+debian-1.3build1) ... 108s Selecting previously unselected package libgdal36:amd64. 108s Preparing to unpack .../080-libgdal36_3.10.1+dfsg-1build2_amd64.deb ... 108s Unpacking libgdal36:amd64 (3.10.1+dfsg-1build2) ... 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libtk8.6:amd64 (8.6.16-1) ... 110s Selecting previously unselected package libudunits2-data. 110s Preparing to unpack .../113-libudunits2-data_2.2.28-7build1_all.deb ... 110s Unpacking libudunits2-data (2.2.28-7build1) ... 110s Selecting previously unselected package libudunits2-0. 110s Preparing to unpack .../114-libudunits2-0_2.2.28-7build1_amd64.deb ... 110s Unpacking libudunits2-0 (2.2.28-7build1) ... 110s Selecting previously unselected package libxt6t64:amd64. 110s Preparing to unpack .../115-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 110s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 110s Selecting previously unselected package zip. 110s Preparing to unpack .../116-zip_3.0-14ubuntu2_amd64.deb ... 110s Unpacking zip (3.0-14ubuntu2) ... 110s Selecting previously unselected package unzip. 110s Preparing to unpack .../117-unzip_6.0-28ubuntu6_amd64.deb ... 110s Unpacking unzip (6.0-28ubuntu6) ... 110s Selecting previously unselected package xdg-utils. 110s Preparing to unpack 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unselected package r-cran-withr. 112s Preparing to unpack .../141-r-cran-withr_3.0.2+dfsg-1_all.deb ... 112s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 112s Selecting previously unselected package r-cran-tidyselect. 112s Preparing to unpack .../142-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 112s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 112s Selecting previously unselected package r-cran-dplyr. 112s Preparing to unpack .../143-r-cran-dplyr_1.1.4-4_amd64.deb ... 112s Unpacking r-cran-dplyr (1.1.4-4) ... 113s Selecting previously unselected package r-cran-purrr. 113s Preparing to unpack .../144-r-cran-purrr_1.0.2-1_amd64.deb ... 113s Unpacking r-cran-purrr (1.0.2-1) ... 113s Selecting previously unselected package r-cran-mass. 113s Preparing to unpack .../145-r-cran-mass_7.3-64-1_amd64.deb ... 113s Unpacking r-cran-mass (7.3-64-1) ... 113s Selecting previously unselected package r-cran-class. 113s Preparing to unpack .../146-r-cran-class_7.3-23-1_amd64.deb ... 113s Unpacking r-cran-class (7.3-23-1) ... 113s Selecting previously unselected package r-cran-proxy. 113s Preparing to unpack .../147-r-cran-proxy_0.4-27-1_amd64.deb ... 113s Unpacking r-cran-proxy (0.4-27-1) ... 113s Selecting previously unselected package r-cran-e1071. 113s Preparing to unpack .../148-r-cran-e1071_1.7-16-1_amd64.deb ... 113s Unpacking r-cran-e1071 (1.7-16-1) ... 113s Selecting previously unselected package r-cran-kernsmooth. 113s Preparing to unpack .../149-r-cran-kernsmooth_2.23-26-1_amd64.deb ... 113s Unpacking r-cran-kernsmooth (2.23-26-1) ... 113s Selecting previously unselected package r-cran-classint. 113s Preparing to unpack .../150-r-cran-classint_0.4-11+dfsg-1_amd64.deb ... 113s Unpacking r-cran-classint (0.4-11+dfsg-1) ... 113s Selecting previously unselected package r-cran-dbi. 113s Preparing to unpack .../151-r-cran-dbi_1.2.3-1_all.deb ... 113s Unpacking r-cran-dbi (1.2.3-1) ... 113s Selecting previously unselected package r-cran-pkgkitten. 113s Preparing to unpack .../152-r-cran-pkgkitten_0.2.4-1_all.deb ... 113s Unpacking r-cran-pkgkitten (0.2.4-1) ... 113s Selecting previously unselected package r-cran-rcpp. 113s Preparing to unpack .../153-r-cran-rcpp_1.0.14-1_amd64.deb ... 113s Unpacking r-cran-rcpp (1.0.14-1) ... 113s Selecting previously unselected package r-cran-wk. 113s Preparing to unpack .../154-r-cran-wk_0.9.4-1_amd64.deb ... 113s Unpacking r-cran-wk (0.9.4-1) ... 113s Selecting previously unselected package r-cran-s2. 113s Preparing to unpack .../155-r-cran-s2_1.1.7-1_amd64.deb ... 113s Unpacking r-cran-s2 (1.1.7-1) ... 113s Selecting previously unselected package r-cran-units. 113s Preparing to unpack .../156-r-cran-units_0.8-5+dfsg-1_amd64.deb ... 113s Unpacking r-cran-units (0.8-5+dfsg-1) ... 113s Selecting previously unselected package r-cran-sf. 113s Preparing to unpack .../157-r-cran-sf_1.0-19+dfsg-1_amd64.deb ... 113s Unpacking r-cran-sf (1.0-19+dfsg-1) ... 113s Selecting previously unselected package r-cran-areal. 113s Preparing to unpack .../158-r-cran-areal_0.1.8+dfsg-2_all.deb ... 113s Unpacking r-cran-areal (0.1.8+dfsg-2) ... 113s Selecting previously unselected package r-cran-sys. 113s Preparing to unpack .../159-r-cran-sys_3.4.3-1_amd64.deb ... 113s Unpacking r-cran-sys (3.4.3-1) ... 113s Selecting previously unselected package r-cran-askpass. 113s Preparing to unpack .../160-r-cran-askpass_1.2.1-1_amd64.deb ... 113s Unpacking r-cran-askpass (1.2.1-1) ... 114s Selecting previously unselected package r-cran-base64enc. 114s Preparing to unpack .../161-r-cran-base64enc_0.1-3-3_amd64.deb ... 114s Unpacking r-cran-base64enc (0.1-3-3) ... 114s Selecting previously unselected package r-cran-bdsmatrix. 114s Preparing to unpack .../162-r-cran-bdsmatrix_1.3-7-1_amd64.deb ... 114s Unpacking r-cran-bdsmatrix (1.3-7-1) ... 114s Selecting previously unselected package r-cran-brio. 114s Preparing to unpack .../163-r-cran-brio_1.1.5-1_amd64.deb ... 114s Unpacking r-cran-brio (1.1.5-1) ... 114s Selecting previously unselected package r-cran-fastmap. 114s Preparing to unpack .../164-r-cran-fastmap_1.2.0-1_amd64.deb ... 114s Unpacking r-cran-fastmap (1.2.0-1) ... 114s Selecting previously unselected package r-cran-cachem. 114s Preparing to unpack .../165-r-cran-cachem_1.1.0-1_amd64.deb ... 114s Unpacking r-cran-cachem (1.1.0-1) ... 114s Selecting previously unselected package r-cran-digest. 114s Preparing to unpack .../166-r-cran-digest_0.6.37-1_amd64.deb ... 114s Unpacking r-cran-digest (0.6.37-1) ... 114s Selecting previously unselected package r-cran-htmltools. 114s Preparing to unpack .../167-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 114s Unpacking r-cran-htmltools (0.5.8.1-1) ... 114s Selecting previously unselected package r-cran-jquerylib. 114s Preparing to unpack .../168-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 114s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 114s Selecting previously unselected package r-cran-jsonlite. 114s Preparing to unpack .../169-r-cran-jsonlite_1.8.9+dfsg-1_amd64.deb ... 114s Unpacking r-cran-jsonlite (1.8.9+dfsg-1) ... 114s Selecting previously unselected package r-cran-memoise. 114s Preparing to unpack .../170-r-cran-memoise_2.0.1-1_all.deb ... 114s Unpacking r-cran-memoise (2.0.1-1) ... 114s Selecting previously unselected package r-cran-mime. 114s Preparing to unpack .../171-r-cran-mime_0.12-2_amd64.deb ... 114s Unpacking r-cran-mime (0.12-2) ... 114s Selecting previously unselected package r-cran-fs. 114s Preparing to unpack .../172-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 114s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 114s Selecting previously unselected package r-cran-rappdirs. 114s Preparing to unpack .../173-r-cran-rappdirs_0.3.3-1_amd64.deb ... 114s Unpacking r-cran-rappdirs (0.3.3-1) ... 114s Selecting previously unselected package r-cran-sass. 114s Preparing to unpack .../174-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 114s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 114s Selecting previously unselected package r-cran-bslib. 114s Preparing to unpack .../175-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 114s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 114s Selecting previously unselected package r-cran-cairo. 114s Preparing to unpack .../176-r-cran-cairo_1.6-2-1_amd64.deb ... 114s Unpacking r-cran-cairo (1.6-2-1) ... 114s Selecting previously unselected package r-cran-ps. 114s Preparing to unpack .../177-r-cran-ps_1.8.1-1_amd64.deb ... 114s Unpacking r-cran-ps (1.8.1-1) ... 114s Selecting previously unselected package r-cran-processx. 114s Preparing to unpack .../178-r-cran-processx_3.8.5-1_amd64.deb ... 114s Unpacking r-cran-processx (3.8.5-1) ... 114s Selecting previously unselected package r-cran-callr. 114s Preparing to unpack .../179-r-cran-callr_3.7.6-1_all.deb ... 114s Unpacking r-cran-callr (3.7.6-1) ... 114s Selecting previously unselected package r-cran-cluster. 114s Preparing to unpack .../180-r-cran-cluster_2.1.8-1_amd64.deb ... 114s Unpacking r-cran-cluster (2.1.8-1) ... 115s Selecting previously unselected package r-cran-clue. 115s Preparing to unpack .../181-r-cran-clue_0.3-66-1_amd64.deb ... 115s Unpacking r-cran-clue (0.3-66-1) ... 115s Selecting previously unselected package r-cran-codetools. 115s Preparing to unpack .../182-r-cran-codetools_0.2-20-1_all.deb ... 115s Unpacking r-cran-codetools (0.2-20-1) ... 115s Selecting previously unselected package r-cran-collapse. 115s Preparing to unpack .../183-r-cran-collapse_2.0.19-1_amd64.deb ... 115s Unpacking r-cran-collapse (2.0.19-1) ... 115s Selecting previously unselected package r-cran-colorspace. 115s Preparing to unpack .../184-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ... 115s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 115s Selecting previously unselected package r-cran-commonmark. 115s Preparing to unpack .../185-r-cran-commonmark_1.9.2-2_amd64.deb ... 115s Unpacking r-cran-commonmark (1.9.2-2) ... 115s Selecting previously unselected package r-cran-lazyeval. 115s Preparing to unpack .../186-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 115s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 115s Selecting previously unselected package r-cran-rex. 115s Preparing to unpack .../187-r-cran-rex_1.2.1-1_all.deb ... 115s Unpacking r-cran-rex (1.2.1-1) ... 115s Selecting previously unselected package r-cran-curl. 115s Preparing to unpack .../188-r-cran-curl_6.1.0+dfsg-1_amd64.deb ... 115s Unpacking r-cran-curl (6.1.0+dfsg-1) ... 115s Selecting previously unselected package r-cran-openssl. 115s Preparing to unpack .../189-r-cran-openssl_2.2.0+dfsg-1_amd64.deb ... 115s Unpacking r-cran-openssl (2.2.0+dfsg-1) ... 115s Selecting previously unselected package r-cran-httr. 115s Preparing to unpack .../190-r-cran-httr_1.4.7+dfsg-1_all.deb ... 115s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 115s Selecting previously unselected package r-cran-crayon. 115s Preparing to unpack .../191-r-cran-crayon_1.5.3-1_all.deb ... 115s Unpacking r-cran-crayon (1.5.3-1) ... 115s Selecting previously unselected package r-cran-yaml. 115s Preparing to unpack .../192-r-cran-yaml_2.3.10-1_amd64.deb ... 115s Unpacking r-cran-yaml (2.3.10-1) ... 115s Selecting previously unselected package r-cran-covr. 115s Preparing to unpack .../193-r-cran-covr_3.6.4+dfsg-1_amd64.deb ... 115s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 115s Selecting previously unselected package r-cran-cpp11. 115s Preparing to unpack .../194-r-cran-cpp11_0.5.1-1_all.deb ... 115s Unpacking r-cran-cpp11 (0.5.1-1) ... 115s Selecting previously unselected package r-cran-cubelyr. 115s Preparing to unpack .../195-r-cran-cubelyr_1.0.2-1_all.deb ... 115s Unpacking r-cran-cubelyr (1.0.2-1) ... 115s Selecting previously unselected package r-cran-deldir. 115s Preparing to unpack .../196-r-cran-deldir_2.0-4-1build1_amd64.deb ... 115s Unpacking r-cran-deldir (2.0-4-1build1) ... 115s Selecting previously unselected package r-cran-desc. 115s Preparing to unpack .../197-r-cran-desc_1.4.3-1_all.deb ... 115s Unpacking r-cran-desc (1.4.3-1) ... 115s Selecting previously unselected package r-cran-diffobj. 115s Preparing to unpack .../198-r-cran-diffobj_0.3.5-1_amd64.deb ... 115s Unpacking r-cran-diffobj (0.3.5-1) ... 115s Selecting previously unselected package r-cran-evaluate. 115s Preparing to unpack .../199-r-cran-evaluate_1.0.3-1_all.deb ... 115s Unpacking r-cran-evaluate (1.0.3-1) ... 116s Selecting previously unselected package r-cran-lattice. 116s Preparing to unpack .../200-r-cran-lattice_0.22-6-1_amd64.deb ... 116s Unpacking r-cran-lattice (0.22-6-1) ... 116s Selecting previously unselected package r-cran-sp. 116s Preparing to unpack .../201-r-cran-sp_1%3a2.1-4+dfsg-1_amd64.deb ... 116s Unpacking r-cran-sp (1:2.1-4+dfsg-1) ... 116s Selecting previously unselected package r-cran-terra. 116s Preparing to unpack .../202-r-cran-terra_1.8-10-1_amd64.deb ... 116s Unpacking r-cran-terra (1.8-10-1) ... 116s Selecting previously unselected package r-cran-raster. 116s Preparing to unpack .../203-r-cran-raster_3.6-31-1_amd64.deb ... 116s Unpacking r-cran-raster (3.6-31-1) ... 116s Selecting previously unselected package r-cran-exactextractr. 116s Preparing to unpack .../204-r-cran-exactextractr_0.10.0-1build2_amd64.deb ... 116s Unpacking r-cran-exactextractr (0.10.0-1build2) ... 116s Selecting previously unselected package r-cran-farver. 116s Preparing to unpack .../205-r-cran-farver_2.1.2-1_amd64.deb ... 116s Unpacking r-cran-farver (2.1.2-1) ... 116s Selecting previously unselected package r-cran-fnn. 116s Preparing to unpack .../206-r-cran-fnn_1.1.4.1-1_amd64.deb ... 116s Unpacking r-cran-fnn (1.1.4.1-1) ... 116s Selecting previously unselected package r-cran-fontawesome. 116s Preparing to unpack .../207-r-cran-fontawesome_0.5.3-1_all.deb ... 116s Unpacking r-cran-fontawesome (0.5.3-1) ... 116s Selecting previously unselected package r-cran-formula. 116s Preparing to unpack .../208-r-cran-formula_1.2-5-1_all.deb ... 116s Unpacking r-cran-formula (1.2-5-1) ... 116s Selecting previously unselected package r-cran-globals. 116s Preparing to unpack .../209-r-cran-globals_0.16.3-1_all.deb ... 116s Unpacking r-cran-globals (0.16.3-1) ... 116s Selecting previously unselected package r-cran-listenv. 116s Preparing to unpack .../210-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 116s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 116s Selecting previously unselected package r-cran-parallelly. 116s Preparing to unpack .../211-r-cran-parallelly_1.41.0-1_amd64.deb ... 116s Unpacking r-cran-parallelly (1.41.0-1) ... 116s Selecting previously unselected package r-cran-future. 116s Preparing to unpack .../212-r-cran-future_1.34.0+dfsg-1_all.deb ... 116s Unpacking r-cran-future (1.34.0+dfsg-1) ... 116s Selecting previously unselected package r-cran-future.apply. 116s Preparing to unpack .../213-r-cran-future.apply_1.11.3+dfsg-1_all.deb ... 116s Unpacking r-cran-future.apply (1.11.3+dfsg-1) ... 116s Selecting previously unselected package r-cran-gtable. 116s Preparing to unpack .../214-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 116s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 116s Selecting previously unselected package r-cran-isoband. 116s Preparing to unpack .../215-r-cran-isoband_0.2.7-1_amd64.deb ... 116s Unpacking r-cran-isoband (0.2.7-1) ... 116s Selecting previously unselected package r-cran-nlme. 116s Preparing to unpack .../216-r-cran-nlme_3.1.167-1_amd64.deb ... 116s Unpacking r-cran-nlme (3.1.167-1) ... 116s Selecting previously unselected package r-cran-matrix. 116s Preparing to unpack .../217-r-cran-matrix_1.7-2-1_amd64.deb ... 116s Unpacking r-cran-matrix (1.7-2-1) ... 116s Selecting previously unselected package r-cran-mgcv. 117s Preparing to unpack .../218-r-cran-mgcv_1.9-1-1_amd64.deb ... 117s Unpacking r-cran-mgcv (1.9-1-1) ... 117s Selecting previously unselected package r-cran-labeling. 117s Preparing to unpack .../219-r-cran-labeling_0.4.3-1_all.deb ... 117s Unpacking r-cran-labeling (0.4.3-1) ... 117s Selecting previously unselected package r-cran-munsell. 117s Preparing to unpack .../220-r-cran-munsell_0.5.1-1_all.deb ... 117s Unpacking r-cran-munsell (0.5.1-1) ... 117s Selecting previously unselected package r-cran-rcolorbrewer. 117s Preparing to unpack .../221-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 117s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 117s Selecting previously unselected package r-cran-viridislite. 117s Preparing to unpack .../222-r-cran-viridislite_0.4.2-2_all.deb ... 117s Unpacking r-cran-viridislite (0.4.2-2) ... 117s Selecting previously unselected package r-cran-scales. 117s Preparing to unpack .../223-r-cran-scales_1.3.0-1_all.deb ... 117s Unpacking r-cran-scales (1.3.0-1) ... 117s Selecting previously unselected package r-cran-ggplot2. 117s Preparing to unpack .../224-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 117s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 117s Selecting previously unselected package r-cran-tweenr. 117s Preparing to unpack .../225-r-cran-tweenr_2.0.3-1_amd64.deb ... 117s Unpacking r-cran-tweenr (2.0.3-1) ... 117s Selecting previously unselected package r-cran-polyclip. 117s Preparing to unpack .../226-r-cran-polyclip_1.10-7-1_amd64.deb ... 117s Unpacking r-cran-polyclip (1.10-7-1) ... 117s Selecting previously unselected package r-cran-systemfonts. 117s Preparing to unpack .../227-r-cran-systemfonts_1.2.1-1_amd64.deb ... 117s Unpacking r-cran-systemfonts (1.2.1-1) ... 117s Selecting previously unselected package r-cran-rcppeigen. 117s Preparing to unpack .../228-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 117s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 117s Selecting previously unselected package r-cran-ggforce. 117s Preparing to unpack .../229-r-cran-ggforce_0.4.2-1_amd64.deb ... 117s Unpacking r-cran-ggforce (0.4.2-1) ... 117s Selecting previously unselected package r-cran-stringi. 117s Preparing to unpack .../230-r-cran-stringi_1.8.4-1build1_amd64.deb ... 117s Unpacking r-cran-stringi (1.8.4-1build1) ... 117s Selecting previously unselected package r-cran-stringr. 117s Preparing to unpack .../231-r-cran-stringr_1.5.1-1_all.deb ... 117s Unpacking r-cran-stringr (1.5.1-1) ... 117s Selecting previously unselected package r-cran-ggthemes. 117s Preparing to unpack .../232-r-cran-ggthemes_5.1.0-1_all.deb ... 117s Unpacking r-cran-ggthemes (5.1.0-1) ... 117s Selecting previously unselected package r-cran-goftest. 117s Preparing to unpack .../233-r-cran-goftest_1.2-3-1_amd64.deb ... 117s Unpacking r-cran-goftest (1.2-3-1) ... 117s Selecting previously unselected package r-cran-gridextra. 117s Preparing to unpack .../234-r-cran-gridextra_2.3-3build1_all.deb ... 117s Unpacking r-cran-gridextra (2.3-3build1) ... 117s Selecting previously unselected package r-cran-zoo. 117s Preparing to unpack .../235-r-cran-zoo_1.8-12-2_amd64.deb ... 117s Unpacking r-cran-zoo (1.8-12-2) ... 118s Selecting previously unselected package r-cran-sftime. 118s Preparing to unpack .../236-r-cran-sftime_0.2-0-6_all.deb ... 118s Unpacking r-cran-sftime (0.2-0-6) ... 118s Selecting previously unselected package r-cran-xts. 118s Preparing to unpack .../237-r-cran-xts_0.14.1-1_amd64.deb ... 118s Unpacking r-cran-xts (0.14.1-1) ... 118s Selecting previously unselected package r-cran-intervals. 118s Preparing to unpack .../238-r-cran-intervals_0.15.5-1_amd64.deb ... 118s Unpacking r-cran-intervals (0.15.5-1) ... 118s Selecting previously unselected package r-cran-spacetime. 118s Preparing to unpack .../239-r-cran-spacetime_1.3-2-2_all.deb ... 118s Unpacking r-cran-spacetime (1.3-2-2) ... 118s Selecting previously unselected package r-cran-stars. 118s Preparing to unpack .../240-r-cran-stars_0.6-7-1_all.deb ... 118s Unpacking r-cran-stars (0.6-7-1) ... 118s Selecting previously unselected package r-cran-gstat. 118s Preparing to unpack .../241-r-cran-gstat_2.1-2-1_amd64.deb ... 118s Unpacking r-cran-gstat (2.1-2-1) ... 118s Selecting previously unselected package r-cran-xfun. 118s Preparing to unpack .../242-r-cran-xfun_0.50+dfsg-1_amd64.deb ... 118s Unpacking r-cran-xfun (0.50+dfsg-1) ... 118s Selecting previously unselected package r-cran-highr. 118s Preparing to unpack .../243-r-cran-highr_0.11+dfsg-1_all.deb ... 118s Unpacking r-cran-highr (0.11+dfsg-1) ... 118s Selecting previously unselected package r-cran-later. 118s Preparing to unpack .../244-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 118s Unpacking r-cran-later (1.4.1+dfsg-1) ... 118s Selecting previously unselected package r-cran-promises. 118s Preparing to unpack .../245-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 118s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 118s Selecting previously unselected package r-cran-httpuv. 118s Preparing to unpack .../246-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 118s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 118s Selecting previously unselected package libjs-mathjax. 118s Preparing to unpack .../247-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 118s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 119s Selecting previously unselected package r-cran-knitr. 119s Preparing to unpack .../248-r-cran-knitr_1.49+dfsg-1_all.deb ... 119s Unpacking r-cran-knitr (1.49+dfsg-1) ... 119s Selecting previously unselected package r-cran-lmtest. 119s Preparing to unpack .../249-r-cran-lmtest_0.9.40-1_amd64.deb ... 119s Unpacking r-cran-lmtest (0.9.40-1) ... 119s Selecting previously unselected package r-cran-lwgeom. 119s Preparing to unpack .../250-r-cran-lwgeom_0.2-14-1_amd64.deb ... 119s Unpacking r-cran-lwgeom (0.2-14-1) ... 119s Selecting previously unselected package r-cran-maps. 119s Preparing to unpack .../251-r-cran-maps_3.4.2-1_amd64.deb ... 119s Unpacking r-cran-maps (3.4.2-1) ... 119s Selecting previously unselected package r-cran-mapdata. 119s Preparing to unpack .../252-r-cran-mapdata_2.3.1-1_amd64.deb ... 119s Unpacking r-cran-mapdata (2.3.1-1) ... 120s Selecting previously unselected package r-cran-misctools. 120s Preparing to unpack .../253-r-cran-misctools_0.6-28-1_all.deb ... 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(1.0.4+dfsg-1) ... 125s Setting up r-cran-rprojroot (2.0.4-2) ... 125s Setting up r-cran-fnn (1.1.4.1-1) ... 125s Setting up r-cran-deldir (2.0-4-1build1) ... 125s Setting up r-cran-goftest (1.2-3-1) ... 125s Setting up r-cran-randomforest (4.7-1.2-1) ... 125s Setting up r-cran-askpass (1.2.1-1) ... 125s Setting up r-cran-fastmap (1.2.0-1) ... 125s Setting up r-cran-jsonlite (1.8.9+dfsg-1) ... 125s Setting up r-cran-rnetcdf (2.9-1-1build2) ... 125s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 125s Setting up r-cran-sp (1:2.1-4+dfsg-1) ... 125s Setting up r-cran-utf8 (1.2.4-1) ... 125s Setting up r-cran-colorspace (2.1-1+dfsg-1) ... 125s Setting up r-cran-parallelly (1.41.0-1) ... 125s Setting up r-cran-stringi (1.8.4-1build1) ... 125s Setting up r-cran-rex (1.2.1-1) ... 125s Setting up r-cran-cpp11 (0.5.1-1) ... 125s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 125s Setting up r-cran-isoband (0.2.7-1) ... 125s Setting up r-cran-waldo (0.6.1-1) ... 125s Setting up r-cran-gtable 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125s Setting up r-cran-callr (3.7.6-1) ... 125s Setting up r-cran-desc (1.4.3-1) ... 125s Setting up r-cran-munsell (0.5.1-1) ... 125s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 125s Setting up r-cran-sandwich (3.1-1-1) ... 125s Setting up r-cran-fontawesome (0.5.3-1) ... 125s Setting up r-cran-survival (3.8-3-1) ... 125s Setting up r-cran-xts (0.14.1-1) ... 125s Setting up r-cran-rdpack (2.6.2-1) ... 125s Setting up r-cran-tweenr (2.0.3-1) ... 125s Setting up r-cran-future (1.34.0+dfsg-1) ... 125s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 125s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 125s Setting up r-cran-future.apply (1.11.3+dfsg-1) ... 125s Setting up r-cran-systemfonts (1.2.1-1) ... 125s Setting up r-cran-httr (1.4.7+dfsg-1) ... 125s Setting up r-cran-gridextra (2.3-3build1) ... 125s Setting up r-cran-scales (1.3.0-1) ... 125s Setting up r-cran-memoise (2.0.1-1) ... 125s Setting up r-cran-covr (3.6.4+dfsg-1) ... 125s Setting up r-cran-promises (1.3.2+dfsg-1) ... 125s 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r-cran-tidyr (1.3.1-1) ... 125s Setting up r-cran-ggforce (0.4.2-1) ... 125s Setting up r-cran-spatstat.model (3.2-11-1) ... 125s Setting up r-cran-shiny (1.9.1+dfsg-1) ... 125s Setting up r-cran-ncmeta (0.3.6-1) ... 125s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 125s Setting up r-cran-spatstat.linnet (3.1-5-1) ... 125s Setting up r-cran-spatstat (3.0-8-1) ... 125s Setting up libheif-plugin-aomdec:amd64 (1.19.5-1build1) ... 125s Setting up libheif-plugin-libde265:amd64 (1.19.5-1build1) ... 125s Setting up libheif1:amd64 (1.19.5-1build1) ... 125s Setting up libgdal36:amd64 (3.10.1+dfsg-1build2) ... 125s Setting up r-cran-sf (1.0-19+dfsg-1) ... 125s Setting up r-cran-stars (0.6-7-1) ... 125s Setting up r-cran-sftime (0.2-0-6) ... 125s Setting up r-cran-areal (0.1.8+dfsg-2) ... 125s Setting up r-cran-gstat (2.1-2-1) ... 125s Setting up r-cran-lwgeom (0.2-14-1) ... 125s Setting up r-cran-terra (1.8-10-1) ... 125s Setting up r-cran-ncdfgeom (1.1.6+dfsg-1) ... 125s Setting up r-cran-raster (3.6-31-1) ... 125s Setting up r-cran-exactextractr (0.10.0-1build2) ... 125s Processing triggers for install-info (7.1.1-1) ... 125s Processing triggers for libc-bin (2.40-4ubuntu1) ... 125s Processing triggers for man-db (2.13.0-1) ... 127s autopkgtest [19:29:01]: test run-unit-test: [----------------------- 127s BEGIN TEST aggregate.R 128s 128s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 128s Copyright (C) 2024 The R Foundation for Statistical Computing 128s Platform: x86_64-pc-linux-gnu 128s 128s R is free software and comes with ABSOLUTELY NO WARRANTY. 128s You are welcome to redistribute it under certain conditions. 128s Type 'license()' or 'licence()' for distribution details. 128s 128s R is a collaborative project with many contributors. 128s Type 'contributors()' for more information and 128s 'citation()' on how to cite R or R packages in publications. 128s 128s Type 'demo()' for some demos, 'help()' for on-line help, or 128s 'help.start()' for an HTML browser interface to help. 128s Type 'q()' to quit R. 128s 128s > ## IGNORE_RDIFF_BEGIN 128s > library(stars) 128s Loading required package: abind 128s Loading required package: sf 128s Linking to GEOS 3.13.0, GDAL 3.10.1, PROJ 9.5.1; sf_use_s2() is TRUE 128s > ## IGNORE_RDIFF_END 128s > 128s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 128s + data(air) # this loads several datasets in .GlobalEnv 128s + dim(air) 128s + d = st_dimensions(station = st_set_crs(st_as_sfc(stations), 4326), time = dates) 128s + 128s + blocks = st_make_grid(st_as_sfc("POLYGON ((5.871619 47.26986, 15.03811 47.26986, 15.03811 55.05653, 5.871619 55.05653, 5.871619 47.26986))", crs = 4326), 128s + n = c(3,3)) 128s + 128s + print(aq <- st_as_stars(list(PM10 = air), dimensions = d)) 128s + print(a <- aggregate(aq, blocks, mean, na.rm = TRUE)) 128s + } 129s stars object with 2 dimensions and 1 attribute 129s attribute(s): 129s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 129s PM10 0 9.921 14.792 17.69728 21.992 274.333 157659 129s dimension(s): 129s from to offset delta refsys point 129s station 1 70 NA NA WGS 84 TRUE 129s time 1 4383 1998-01-01 1 days Date FALSE 129s values 129s station POINT (9.585911 53.67057),...,POINT (9.446661 49.24068) 129s time NULL 129s stars object with 2 dimensions and 1 attribute 129s attribute(s): 129s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 129s PM10 1 11 15.57425 18.1715 22.17197 183.271 8429 129s dimension(s): 129s from to offset delta refsys point 129s geometry 1 9 NA NA WGS 84 FALSE 129s time 1 4383 1998-01-01 1 days Date FALSE 129s values 129s geometry POLYGON ((5.871619 47.269...,...,POLYGON ((11.98261 52.460... 129s time NULL 129s > 129s > # adapted from ?read_stars: 129s > m = array(1:720, dim = c(x = 10, y = 12, t = 6)) # named dim 129s > st = st_as_stars(m) 129s > attr(st, "dimensions")$y$delta = -1 129s > attr(st, "dimensions")$y$offset = 12 129s > tm = as.Date("2019-02-19") + 1:6 129s > st = st_set_crs(st_set_dimensions(st, 3, values = tm), 4326) 129s > 129s > tmp = tempfile(fileext = ".tif") 129s > write_stars(st, tmp) 129s > 129s > (red <- setNames(read_stars(tmp, RasterIO = list(nXOff = 1, nYOff = 1, nXsize = 10, nYSize = 12, 129s + nBufXSize = 2, nBufYSize = 2)), "foo")) 129s stars object with 3 dimensions and 1 attribute 129s attribute(s): 129s Min. 1st Qu. Median Mean 3rd Qu. Max. 129s foo 33 199.25 365.5 365.5 531.75 698 129s dimension(s): 129s from to offset delta refsys point x/y 129s x 1 2 0 5 WGS 84 FALSE [x] 129s y 1 2 12 -6 WGS 84 FALSE [y] 129s band 1 6 NA NA NA NA 129s > 129s > sfc = st_set_crs(st_as_sfc(red, as_points = FALSE), st_crs(st)) 129s > (a = aggregate(st, st_sf(a = 1, geom = sfc), mean)) 129s stars object with 2 dimensions and 1 attribute 129s attribute(s): 129s Min. 1st Qu. Median Mean 3rd Qu. Max. 129s A1 28 194.25 360.5 360.5 526.75 693 129s dimension(s): 129s from to offset delta refsys point 129s geom 1 4 NA NA WGS 84 FALSE 129s t 1 6 2019-02-20 1 days Date FALSE 129s values 129s geom POLYGON ((0 12, 5 12, 5 6...,...,POLYGON ((5 6, 10 6, 10 0... 129s t NULL 129s > (a = aggregate(st, sfc, mean)) 129s stars object with 2 dimensions and 1 attribute 129s attribute(s): 129s Min. 1st Qu. Median Mean 3rd Qu. Max. 129s A1 28 194.25 360.5 360.5 526.75 693 129s dimension(s): 129s from to offset delta refsys point 129s geometry 1 4 NA NA WGS 84 FALSE 129s t 1 6 2019-02-20 1 days Date FALSE 129s values 129s geometry POLYGON ((0 12, 5 12, 5 6...,...,POLYGON ((5 6, 10 6, 10 0... 129s t NULL 129s > 129s > tm0 = as.Date("2019-02-19") + -1:8 129s > (a = aggregate(st, tm0, mean, na.rm = TRUE)) 129s stars object with 3 dimensions and 1 attribute 129s attribute(s): 129s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 129s A1 1 180.75 360.5 360.5 540.25 720 480 129s dimension(s): 129s from to offset delta refsys point x/y 129s time 1 10 2019-02-18 1 days Date NA 129s x 1 10 0 1 WGS 84 FALSE [x] 129s y 1 12 12 -1 WGS 84 FALSE [y] 129s > (a = aggregate(st, "days", mean, na.rm = TRUE)) 129s stars object with 3 dimensions and 1 attribute 129s attribute(s): 129s Min. 1st Qu. Median Mean 3rd Qu. Max. 129s A1 1 180.75 360.5 360.5 540.25 720 129s dimension(s): 129s from to offset delta refsys point x/y 129s time 1 6 2019-02-20 1 days Date NA 129s x 1 10 0 1 WGS 84 FALSE [x] 129s y 1 12 12 -1 WGS 84 FALSE [y] 129s > yd = function(x) as.POSIXlt(x)$yday 129s > (a = aggregate(st, yd, mean, na.rm = TRUE)) 129s stars object with 3 dimensions and 1 attribute 129s attribute(s): 129s Min. 1st Qu. Median Mean 3rd Qu. Max. 129s A1 1 180.75 360.5 360.5 540.25 720 129s dimension(s): 129s from to offset delta refsys point values x/y 129s geometry 1 6 NA NA NA NA 50,...,55 129s x 1 10 0 1 WGS 84 FALSE NULL [x] 129s y 1 12 12 -1 WGS 84 FALSE NULL [y] 129s > 129s > # with "by" geometry not overlapping x 129s > pt = st_point(c(-10,-10)) 129s > (sfc = c(sfc, st_sfc(pt, crs = st_crs(sfc)))) 129s Geometry set for 5 features 129s Geometry type: GEOMETRY 129s Dimension: XY 129s Bounding box: xmin: -10 ymin: -10 xmax: 10 ymax: 12 129s Geodetic CRS: WGS 84 129s POLYGON ((0 12, 5 12, 5 6, 0 6, 0 12)) 129s POLYGON ((5 12, 10 12, 10 6, 5 6, 5 12)) 129s POLYGON ((0 6, 5 6, 5 0, 0 0, 0 6)) 129s > (a = aggregate(st, sfc, mean)) 129s POLYGON ((5 6, 10 6, 10 0, 5 0, 5 6)) 129s POINT (-10 -10) 129s stars object with 2 dimensions and 1 attribute 129s attribute(s): 129s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 129s A1 28 194.25 360.5 360.5 526.75 693 6 129s dimension(s): 129s from to offset delta refsys point 129s geometry 1 5 NA NA WGS 84 FALSE 129s t 1 6 2019-02-20 1 days Date FALSE 129s values 129s geometry POLYGON ((0 12, 5 12, 5 6...,...,POINT (-10 -10) 129s t NULL 129s > (a = aggregate(st, st, mean)) 129s stars object with 2 dimensions and 1 attribute 129s attribute(s): 129s Min. 1st Qu. Median Mean 3rd Qu. Max. 129s A1 1 180.75 360.5 360.5 540.25 720 129s dimension(s): 129s from to offset delta refsys point 129s geometry 1 120 NA NA WGS 84 FALSE 129s t 1 6 2019-02-20 1 days Date FALSE 129s values 129s geometry POLYGON ((0 12, 1 12, 1 1...,...,POLYGON ((9 1, 10 1, 10 0... 129s t NULL 129s > 129s BEGIN TEST align.R 130s 130s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 130s Copyright (C) 2024 The R Foundation for Statistical Computing 130s Platform: x86_64-pc-linux-gnu 130s 130s R is free software and comes with ABSOLUTELY NO WARRANTY. 130s You are welcome to redistribute it under certain conditions. 130s Type 'license()' or 'licence()' for distribution details. 130s 130s R is a collaborative project with many contributors. 130s Type 'contributors()' for more information and 130s 'citation()' on how to cite R or R packages in publications. 130s 130s Type 'demo()' for some demos, 'help()' for on-line help, or 130s 'help.start()' for an HTML browser interface to help. 130s Type 'q()' to quit R. 130s 130s > suppressPackageStartupMessages(library(stars)) 130s > set.seed(1331) 130s > st_sample(st_as_sfc(st_bbox(L7_ETMs)), 1) 130s Geometry set for 1 feature 130s Geometry type: POINT 130s Dimension: XY 130s Bounding box: xmin: 291430.8 ymin: 9111430 xmax: 291430.8 ymax: 9111430 130s Projected CRS: SIRGAS 2000 / UTM zone 25S 130s POINT (291430.8 9111430) 130s > b = st_buffer(st_sample(st_as_sfc(st_bbox(L7_ETMs)), 1), 335) 130s > bba = stars:::st_align(st_bbox(b), st_dimensions(L7_ETMs)) 130s > 130s > plot(L7_ETMs[,,,1], extent = st_buffer(b, 20), reset = FALSE, key.pos = NULL) 131s > plot(b, add = TRUE, col = NA, border = 'red') 131s > plot(st_as_sfc(st_bbox(b)), col = NA, border = 'red', add = TRUE) 131s > plot(st_as_sfc(bba), col = NA, border = 'blue', add = TRUE) 131s > st_bbox(b) 131s xmin ymin xmax ymax 131s 297116.8 9119404.1 297786.8 9120074.1 131s > bba 131s xmin ymin xmax ymax 131s 297098.3 9119392.8 297810.8 9120076.8 131s > 131s > plot(L7_ETMs[,,,1], reset = FALSE, key.pos = NULL) 131s > plot(b, col = 'red', add = TRUE) 131s > plot(st_as_sfc(bba), col = NA, border = 'blue', add = TRUE) 131s > 131s > b0 = st_buffer(b, -100) 131s > L7 = st_as_stars(L7_ETMs)[b0][,,,1] |> st_normalize() 131s > bbb = stars:::st_align(st_bbox(b), st_dimensions(L7)) 131s > plot(L7, extent = st_buffer(b, 120), reset = FALSE, key.pos = NULL) 131s > plot(st_as_sfc(st_bbox(L7)), col = NA, border = 'black', add = TRUE) 131s > plot(st_as_sfc(bbb), col = NA, border = 'blue', add = TRUE) 131s > plot(b, col = NA, border = 'red', add = TRUE) 131s > 131s > all.equal(bbb, bba) 131s [1] TRUE 131s > 131s BEGIN TEST area.R 131s 131s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 131s Copyright (C) 2024 The R Foundation for Statistical Computing 131s Platform: x86_64-pc-linux-gnu 131s 131s R is free software and comes with ABSOLUTELY NO WARRANTY. 131s You are welcome to redistribute it under certain conditions. 131s Type 'license()' or 'licence()' for distribution details. 131s 131s R is a collaborative project with many contributors. 131s Type 'contributors()' for more information and 131s 'citation()' on how to cite R or R packages in publications. 131s 131s Type 'demo()' for some demos, 'help()' for on-line help, or 131s 'help.start()' for an HTML browser interface to help. 131s Type 'q()' to quit R. 131s 131s > suppressPackageStartupMessages(library(stars)) 131s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 131s > x = read_stars(tif) 131s > (a = st_area(x[,1:5,1:5])) 132s stars object with 2 dimensions and 1 attribute 132s attribute(s): 132s Min. 1st Qu. Median Mean 3rd Qu. Max. 132s area [m^2] 812.25 812.25 812.25 812.25 812.25 812.25 132s dimension(s): 132s from to offset delta refsys point x/y 132s x 1 5 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 132s y 1 5 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 132s > 132s > m = matrix(1:20, nrow = 5, ncol = 4) 132s > x = c(0, 0.5, 1, 2, 4, 5) # 6 numbers: boundaries! 132s > y = c(0.3, 0.5, 1, 2, 2.2) # 5 numbers: boundaries! 132s > (r = st_as_stars(list(m = m), dimensions = st_dimensions(x = x, y = y))) 132s stars object with 2 dimensions and 1 attribute 132s attribute(s): 132s Min. 1st Qu. Median Mean 3rd Qu. Max. 132s m 1 5.75 10.5 10.5 15.25 20 132s dimension(s): 132s from to point values x/y 132s x 1 5 FALSE [0,0.5),...,[4,5) [x] 132s y 1 4 FALSE [0.3,0.5),...,[2,2.2) [y] 132s > # image(r, axes = TRUE, col = grey((1:20)/20)) 132s > (a = st_area(r)) 132s Missing coordinate reference system: assuming Cartesian coordinates 132s stars object with 2 dimensions and 1 attribute 132s attribute(s): 132s Min. 1st Qu. Median Mean 3rd Qu. Max. 132s area 0.1 0.2 0.325 0.475 0.5 2 132s dimension(s): 132s from to point values x/y 132s x 1 5 FALSE [0,0.5),...,[4,5) [x] 132s y 1 4 FALSE [0.3,0.5),...,[2,2.2) [y] 132s > #plot(a, axes = TRUE) 132s > 132s > s5p = system.file("sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", package = "starsdata") 132s > if (s5p != "") { 132s + nit.c = read_stars(s5p, sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 132s + curvilinear = c("//PRODUCT/longitude", "//PRODUCT/latitude"), driver = NULL) 132s + if (inherits(nit.c[[1]], "units")) 132s + nit.c[[1]] = units::drop_units(nit.c[[1]]) 132s + nit.c[[1]][nit.c[[1]] > 9e+36] = NA 132s + st_crs(nit.c) = 4326 132s + print((a <- st_area(nit.c[,1:5,1:5]))) 132s + # plot(a, axes = TRUE, border = NA) 132s + } 132s > 132s BEGIN TEST crop.R 132s 132s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 132s Copyright (C) 2024 The R Foundation for Statistical Computing 132s Platform: x86_64-pc-linux-gnu 132s 132s R is free software and comes with ABSOLUTELY NO WARRANTY. 132s You are welcome to redistribute it under certain conditions. 132s Type 'license()' or 'licence()' for distribution details. 132s 132s R is a collaborative project with many contributors. 132s Type 'contributors()' for more information and 132s 'citation()' on how to cite R or R packages in publications. 132s 132s Type 'demo()' for some demos, 'help()' for on-line help, or 132s 'help.start()' for an HTML browser interface to help. 132s Type 'q()' to quit R. 132s 132s > suppressPackageStartupMessages(library(stars)) 132s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 132s > x = read_stars(tif) 132s > xy = structure(list(x = c(293253.999046018, 296400.196497684), y = c(9113801.64775462, 132s + 9111328.49619133)), .Names = c("x", "y")) 132s > pts = st_as_sf(data.frame(do.call(cbind, xy)), coords = c("x", "y"), crs = st_crs(x)) 132s > image(x, axes = TRUE) 132s > plot(st_as_sfc(st_bbox(pts)), col = NA, add = TRUE) 132s > 132s > bb = st_bbox(pts) 132s > (xx = x[bb]) 132s stars object with 3 dimensions and 1 attribute 132s attribute(s): 132s Min. 1st Qu. Median Mean 3rd Qu. Max. 132s L7_ETMs.tif 3 56 73 70.87303 89 255 132s dimension(s): 132s from to offset delta refsys point x/y 132s x 158 268 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 132s y 245 331 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 132s band 1 6 NA NA NA NA 132s > image(xx) 132s > plot(st_as_sfc(bb), add = TRUE, col = NA) 132s > st_contains(st_as_sfc(st_bbox(xx)), st_as_sfc(st_bbox(pts))) 133s Sparse geometry binary predicate list of length 1, where the predicate 133s was `contains' 133s 1: 1 133s > 133s > image(x) 133s > pt = st_point(c(x = 290462.103109179, y = 9114202.32594085)) 133s > buf = st_buffer(st_sfc(pt, crs = st_crs(x)), 1500) 133s > plot(buf, add = TRUE) 133s > 133s > buf = st_sfc(st_polygon(list(st_buffer(pt, 1500)[[1]], st_buffer(pt, 1000)[[1]])), 133s + crs = st_crs(x)) 133s > image(x[buf]) 133s > plot(buf, add = TRUE, col = NA) 133s > image(x[buf,crop=FALSE]) 133s > plot(buf, add = TRUE, col = NA) 133s > 133s > plot(x, rgb = 1:3) 133s > 133s > # #638: 133s > l = st_as_stars(L7_ETMs) 133s > st_bbox(l) |> st_as_sfc() -> bb 133s > (bb + 1e6) |> st_set_crs(st_crs(l)) -> b 133s > st_crop(l, b) 134s stars object with 3 dimensions and 1 attribute 134s attribute(s): 134s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 134s L7_ETMs NA NA NA NaN NA NA 737088 134s dimension(s): 134s from to offset delta refsys point x/y 134s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 134s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 134s band 1 6 NA NA NA NA 134s > st_intersects(b, st_as_sfc(st_bbox(l))) |> as.matrix() 134s Warning message: 134s In st_crop.stars(l, b) : st_crop: bounding boxes of x and y do not overlap 134s [,1] 134s [1,] FALSE 134s > (bb - 1e6) |> st_set_crs(st_crs(l)) -> b 134s > st_crop(l, b) 135s stars object with 3 dimensions and 1 attribute 135s attribute(s): 135s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 135s L7_ETMs NA NA NA NaN NA NA 737088 135s dimension(s): 135s from to offset delta refsys point x/y 135s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 135s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y]Warning message: 135s In st_crop.stars(l, b) : st_crop: bounding boxes of x and y do not overlap 135s 135s band 1 6 NA NA NA NA 135s > 135s BEGIN TEST curvilinear.R 135s 135s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 135s Copyright (C) 2024 The R Foundation for Statistical Computing 135s Platform: x86_64-pc-linux-gnu 135s 135s R is free software and comes with ABSOLUTELY NO WARRANTY. 135s You are welcome to redistribute it under certain conditions. 135s Type 'license()' or 'licence()' for distribution details. 135s 135s R is a collaborative project with many contributors. 135s Type 'contributors()' for more information and 135s 'citation()' on how to cite R or R packages in publications. 135s 135s Type 'demo()' for some demos, 'help()' for on-line help, or 135s 'help.start()' for an HTML browser interface to help. 135s Type 'q()' to quit R. 135s 135s > suppressPackageStartupMessages(library(stars)) 135s > 135s > s5p = system.file("sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", package = "starsdata") 135s > if (s5p != "") { 135s + 135s + lat_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/latitude") 135s + lon_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/longitude") 135s + nit_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column") 135s + lat = read_stars(lat_ds) 135s + lon = read_stars(lon_ds) 135s + nit = read_stars(nit_ds) 135s + nit[[1]][nit[[1]] > 9e+36] = NA 135s + 135s + ll = setNames(c(lon, lat), c("x", "y")) 135s + nit.c0 = st_as_stars(nit, curvilinear = ll) 135s + 135s + # more direct method: 135s + nit.c = read_stars(s5p, sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 135s + curvilinear = c("//PRODUCT/longitude", "//PRODUCT/latitude"), driver = NULL) 135s + if (inherits(nit.c[[1]], "units")) 135s + nit.c[[1]] = units::drop_units(nit.c[[1]]) 135s + nit.c[[1]][nit.c[[1]] > 9e+36] = NA 135s + all.equal(nit.c0, nit.c) 135s + st_crs(nit.c) = 4326 135s + print(nit.c) 135s + 135s + if (FALSE && capabilities()["png"]) { 135s + png("nit1.png", 800, 800) 135s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = TRUE, pch = 16) 135s + maps::map('world', add = TRUE, col = 'red') 135s + dev.off() 135s + 135s + png("nit2.png", 800, 800) 135s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = FALSE, border = NA) 135s + maps::map('world', add = TRUE, col = 'red') 135s + dev.off() 135s + 135s + nit.c = stars:::st_downsample(nit.c, 8) 135s + print(nit.c) 135s + 135s + png("nit3.png", 800, 800) 135s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = TRUE, pch = 16) 135s + maps::map('world', add = TRUE, col = 'red') 135s + dev.off() 135s + 135s + png("nit4.png", 800, 800) 135s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = FALSE, border = NA) 135s + maps::map('world', add = TRUE, col = 'red') 135s + dev.off() 135s + } 135s + 135s + } 135s > 135s BEGIN TEST datasets.R 136s 136s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 136s Copyright (C) 2024 The R Foundation for Statistical Computing 136s Platform: x86_64-pc-linux-gnu 136s 136s R is free software and comes with ABSOLUTELY NO WARRANTY. 136s You are welcome to redistribute it under certain conditions. 136s Type 'license()' or 'licence()' for distribution details. 136s 136s R is a collaborative project with many contributors. 136s Type 'contributors()' for more information and 136s 'citation()' on how to cite R or R packages in publications. 136s 136s Type 'demo()' for some demos, 'help()' for on-line help, or 136s 'help.start()' for an HTML browser interface to help. 136s Type 'q()' to quit R. 136s 136s > suppressPackageStartupMessages(library(stars)) 136s > bcsd_obs 136s stars_proxy object with 2 attributes in 2 file(s): 136s $foo 136s [1] "[...]/bcsd_obs_1999.nc:pr" 136s 136s $bar 136s [1] "[...]/bcsd_obs_1999.nc:tas" 136s 136s dimension(s): 136s from to offset delta refsys values x/y 136s x 1 81 -85 0.125 NA NULL [x] 136s y 1 33 37.12 -0.125 NA NULL [y] 136s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 136s > L7_ETMs 136s stars_proxy object with 1 attribute in 1 file(s): 136s $L7_ETMs 136s [1] "[...]/L7_ETMs.tif" 136s 136s dimension(s): 136s from to offset delta refsys point x/y 136s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 136s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 136s band 1 6 NA NA NA NA 136s > if (require(starsdata, quietly = TRUE)) { 136s + print(stars_sentinel2) 136s + } 136s > 136s BEGIN TEST dimensions.R 136s 136s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 136s Copyright (C) 2024 The R Foundation for Statistical Computing 136s Platform: x86_64-pc-linux-gnu 136s 136s R is free software and comes with ABSOLUTELY NO WARRANTY. 136s You are welcome to redistribute it under certain conditions. 136s Type 'license()' or 'licence()' for distribution details. 136s 136s R is a collaborative project with many contributors. 136s Type 'contributors()' for more information and 136s 'citation()' on how to cite R or R packages in publications. 136s 136s Type 'demo()' for some demos, 'help()' for on-line help, or 136s 'help.start()' for an HTML browser interface to help. 136s Type 'q()' to quit R. 136s 136s > # https://github.com/r-spatial/stars/issues/295 136s > suppressPackageStartupMessages(library(stars)) 137s > raw <- read_stars(system.file("nc/bcsd_obs_1999.nc", package = "stars")) 137s pr, tas, 137s > foo <- function(x, idx) stats::lowess(idx, x)$y 137s > 137s > timeline <- st_get_dimension_values(raw, "time") 137s > smooth = st_apply(raw, 137s + MARGIN = c("x", "y"), 137s + FUN = foo, 137s + idx = st_get_dimension_values(raw, "time") 137s + ) 137s > 137s > st_set_dimensions(smooth, 137s + which = "foo", 137s + values = st_get_dimension_values(raw, "time"), 137s + names = "time" 137s + ) 137s stars object with 3 dimensions and 2 attributes 137s attribute(s): 137s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 137s pr 16.133519 70.371665 84.55774 87.72969 101.94830 278.6427 7116 137s tas -2.354958 9.632157 15.32671 14.61650 19.99331 24.7976 7116 137s dimension(s): 137s from to offset delta refsys values x/y 137s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 137s x 1 81 -85 0.125 NA NULL [x] 137s y 1 33 37.12 -0.125 NA NULL [y] 137s > 137s > raw %>% 137s + st_apply(MARGIN = c("x", "y"), FUN = foo, idx = timeline) %>% 137s + st_set_dimensions("foo", st_dimensions(raw)["time"]) 138s stars object with 3 dimensions and 2 attributes 138s attribute(s): 138s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 138s pr 16.133519 70.371665 84.55774 87.72969 101.94830 278.6427 7116 138s tas -2.354958 9.632157 15.32671 14.61650 19.99331 24.7976 7116 138s dimension(s): 138s from to offset delta refsys values x/y 138s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 138s x 1 81 -85 0.125 NA NULL [x] 138s y 1 33 37.12 -0.125 NA NULL [y] 138s > 138s BEGIN TEST downsample.R 138s 138s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 138s Copyright (C) 2024 The R Foundation for Statistical Computing 138s Platform: x86_64-pc-linux-gnu 138s 138s R is free software and comes with ABSOLUTELY NO WARRANTY. 138s You are welcome to redistribute it under certain conditions. 138s Type 'license()' or 'licence()' for distribution details. 138s 138s R is a collaborative project with many contributors. 138s Type 'contributors()' for more information and 138s 'citation()' on how to cite R or R packages in publications. 138s 138s Type 'demo()' for some demos, 'help()' for on-line help, or 138s 'help.start()' for an HTML browser interface to help. 138s Type 'q()' to quit R. 138s 138s > suppressPackageStartupMessages(library(stars)) 138s > m = matrix(1:121, 11, 11) 138s > m 138s [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] 138s [1,] 1 12 23 34 45 56 67 78 89 100 111 138s [2,] 2 13 24 35 46 57 68 79 90 101 112 138s [3,] 3 14 25 36 47 58 69 80 91 102 113 138s [4,] 4 15 26 37 48 59 70 81 92 103 114 138s [5,] 5 16 27 38 49 60 71 82 93 104 115 138s [6,] 6 17 28 39 50 61 72 83 94 105 116 138s [7,] 7 18 29 40 51 62 73 84 95 106 117 138s [8,] 8 19 30 41 52 63 74 85 96 107 118 138s [9,] 9 20 31 42 53 64 75 86 97 108 119 138s [10,] 10 21 32 43 54 65 76 87 98 109 120 138s [11,] 11 22 33 44 55 66 77 88 99 110 121 138s > s = st_as_stars(m) 138s > st_downsample(s, 1) 138s stars object with 2 dimensions and 1 attribute 138s attribute(s): 138s Min. 1st Qu. Median Mean 3rd Qu. Max. 138s A1 1 28.5 61 61 93.5 121 138s dimension(s): 138s from to offset delta point x/y 138s X1 1 6 0 2 FALSE [x] 138s X2 1 6 0 2 FALSE [y] 138s > st_downsample(s, 1)[[1]] 138s [,1] [,2] [,3] [,4] [,5] [,6] 138s [1,] 1 23 45 67 89 111 138s [2,] 3 25 47 69 91 113 138s [3,] 5 27 49 71 93 115 138s [4,] 7 29 51 73 95 117 138s [5,] 9 31 53 75 97 119 138s [6,] 11 33 55 77 99 121 138s > st_downsample(s, 1, offset = 1) 138s stars object with 2 dimensions and 1 attribute 138s attribute(s): 138s Min. 1st Qu. Median Mean 3rd Qu. Max. 138s A1 13 37 61 61 85 109 138s dimension(s): 138s from to offset delta point x/y 138s X1 1 5 1 2 FALSE [x] 138s X2 1 5 1 2 FALSE [y] 138s > st_downsample(s, 1, offset = 1)[[1]] 138s [,1] [,2] [,3] [,4] [,5] 138s [1,] 13 35 57 79 101 138s [2,] 15 37 59 81 103 138s [3,] 17 39 61 83 105 138s [4,] 19 41 63 85 107 138s [5,] 21 43 65 87 109 138s > st_downsample(s, 1, FUN = mean) 138s stars object with 2 dimensions and 1 attribute 138s attribute(s): 138s Min. 1st Qu. Median Mean 3rd Qu. Max. 138s A1 7 31 55 55 79 103 138s dimension(s): 138s from to offset delta point x/y 138s X1 1 5 0 2 FALSE [x] 138s X2 1 5 0 2 FALSE [y] 138s > st_downsample(s, 1, FUN = mean)[[1]] 138s [,1] [,2] [,3] [,4] [,5] 138s [1,] 7 29 51 73 95 138s [2,] 9 31 53 75 97 138s [3,] 11 33 55 77 99 138s [4,] 13 35 57 79 101 138s [5,] 15 37 59 81 103 138s > st_downsample(s, 1, offset = 1, FUN = mean) 138s stars object with 2 dimensions and 1 attribute 138s attribute(s): 138s Min. 1st Qu. Median Mean 3rd Qu. Max. 138s A1 19 43 67 67 91 115 138s dimension(s): 138s from to offset delta point x/y 138s X1 1 5 1 2 FALSE [x] 138s X2 1 5 1 2 FALSE [y] 138s > st_downsample(s, 1, offset = c(0,1), FUN = mean)[[1]] 138s [,1] [,2] [,3] [,4] [,5] 138s [1,] 18 40 62 84 106 138s [2,] 20 42 64 86 108 138s [3,] 22 44 66 88 110 138s [4,] 24 46 68 90 112 138s [5,] 26 48 70 92 114 138s > st_downsample(s, 1, offset = c(0,1)) 138s stars object with 2 dimensions and 1 attribute 138s attribute(s): 138s Min. 1st Qu. Median Mean 3rd Qu. Max. 138s A1 12 36.5 61 61 85.5 110 138s dimension(s): 138s from to offset delta point x/y 138s X1 1 6 0 2 FALSE [x] 138s X2 1 5 1 2 FALSE [y] 138s > st_downsample(s, 1, offset = c(0,1))[[1]] 138s [,1] [,2] [,3] [,4] [,5] 138s [1,] 12 34 56 78 100 138s [2,] 14 36 58 80 102 138s [3,] 16 38 60 82 104 138s [4,] 18 40 62 84 106 138s [5,] 20 42 64 86 108 138s [6,] 22 44 66 88 110 138s > 139s BEGIN TEST ee.R 139s 139s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 139s Copyright (C) 2024 The R Foundation for Statistical Computing 139s Platform: x86_64-pc-linux-gnu 139s 139s R is free software and comes with ABSOLUTELY NO WARRANTY. 139s You are welcome to redistribute it under certain conditions. 139s Type 'license()' or 'licence()' for distribution details. 139s 139s R is a collaborative project with many contributors. 139s Type 'contributors()' for more information and 139s 'citation()' on how to cite R or R packages in publications. 139s 139s Type 'demo()' for some demos, 'help()' for on-line help, or 139s 'help.start()' for an HTML browser interface to help. 139s Type 'q()' to quit R. 139s 139s > # show that extract with exact=TRUE equals st_interpolate_aw(), only much faster 139s > options(digits=15) 139s > suppressPackageStartupMessages(library(stars)) 139s > L = st_as_stars(L7_ETMs)[,,,1] 139s > set.seed(123432) 139s > st_bbox(L) |> 139s + st_as_sfc() |> 139s + st_centroid() |> 139s + st_buffer(50) |> 139s + st_sample(10) |> 139s + st_combine() |> 139s + st_convex_hull() -> ch 139s > if (interactive()) { 139s + plot(L, reset = FALSE) 139s + plot(ch, add = TRUE, border = 'red', col = NA) 139s + } 139s > if (FALSE) { 139s + e = st_extract(L, ch)[[1]] 139s + a = aggregate(L, ch, mean)[[1]] 139s + identical(e, a) # same code path 139s + ee = aggregate(L, ch, mean, exact = TRUE)[[1]] 139s + all.equal(e, ee) 139s + aw = suppressWarnings(st_interpolate_aw(L, ch, extensive = FALSE)$V1) 139s + all.equal(as.vector(ee), aw) 139s + ee0 = st_extract(L, ch, exact = TRUE)[[1]] 139s + all.equal(ee0, ee) # ?? 139s + } 139s > 139s BEGIN TEST extract.R 139s 139s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 139s Copyright (C) 2024 The R Foundation for Statistical Computing 139s Platform: x86_64-pc-linux-gnu 139s 139s R is free software and comes with ABSOLUTELY NO WARRANTY. 139s You are welcome to redistribute it under certain conditions. 139s Type 'license()' or 'licence()' for distribution details. 139s 139s R is a collaborative project with many contributors. 139s Type 'contributors()' for more information and 139s 'citation()' on how to cite R or R packages in publications. 139s 139s Type 'demo()' for some demos, 'help()' for on-line help, or 139s 'help.start()' for an HTML browser interface to help. 139s Type 'q()' to quit R. 139s 140s > # Create 'stars' object 140s > set.seed(1331) 140s > suppressPackageStartupMessages(library(stars)) 140s > volcano = rbind(volcano, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA) # add NA rows 140s > d = st_dimensions(x = 1:ncol(volcano), y = 1:nrow(volcano)) 140s > (r = st_as_stars(t(volcano))) 140s stars object with 2 dimensions and 1 attribute 140s attribute(s): 140s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 140s A1 94 108 124 130.1879 150 195 732 140s dimension(s): 140s from to offset delta point x/y 140s X1 1 61 0 1 FALSE [x] 140s X2 1 99 0 1 FALSE [y] 140s > r = st_set_dimensions(r, 1, offset = 0, delta = 1) 140s > r = st_set_dimensions(r, 2, offset = nrow(volcano), delta = -1) 140s > 140s > # Create points 140s > pnt = st_sample(st_as_sfc(st_bbox(r)), 100) 140s > pnt = st_as_sf(pnt) 140s > 140s > # Extract - 'st_join' 140s > x = st_join(pnt, st_as_sf(r)) 140s > 140s > # Extract - 'st_extract' 140s > y = st_extract(r, pnt) 140s > 140s > # check there are NA's: 140s > any(is.na(x)) 140s [1] TRUE 140s > # Compare 140s > all.equal(x$A1, y[[1]]) 140s [1] TRUE 140s > 140s > ################################################ 140s > if (FALSE) { 140s + 140s + ## tic: segfaults 140s + # check equal results with stars_proxy: 140s + #x = st_extract(stars:::st_as_stars_proxy(r), pnt) 140s + #all.equal(x$A1, y[[1]]) 140s + #all.equal(x, y) 140s + 140s + r = c(r, 2*r, 10*r) 140s + x = st_join(pnt, st_as_sf(r)) 140s + y = st_as_sf(st_extract(r, pnt)) 140s + all.equal(x, y) 140s + 140s + ## tic: segfaults 140s + #x = st_extract(stars:::st_as_stars_proxy(merge(r)), pnt) 140s + #all.equal(st_as_sf(x), y) 140s + 140s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 140s + xp = read_stars(tif, proxy = TRUE) 140s + xm = read_stars(tif, proxy = FALSE) 140s + pts = st_sample(st_as_sfc(st_bbox(xp)), 10) 140s + pts = c(pts, st_as_sfc("POINT(0 0)"), pts) 140s + em = st_extract(xm, pts) 140s + if (utils::packageVersion("sf") >= "0.9-7") { 140s + ep = st_extract(xp, pts) 140s + print(all.equal(ep, em, check.attributes = TRUE)) 140s + } 140s + 140s + # two-attribute objects: 140s + library(stars) 140s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 140s + xp = read_stars(c(tif, tif), proxy = TRUE) 140s + xm = read_stars(c(tif, tif), proxy = FALSE) 140s + pts = st_sample(st_as_sfc(st_bbox(xp)), 10) 140s + pts = c(pts, st_as_sfc("POINT(0 0)"), pts) 140s + em = st_extract(xm, pts) 140s + if (utils::packageVersion("sf") >= "0.9-7") { 140s + ep = st_extract(xp, pts) 140s + print(all.equal(ep, em, check.attributes = TRUE)) 140s + } 140s + 140s + # single-attribute, single raster objects: 140s + tif1 = paste0(tempfile(), ".tif") 140s + write_stars(xm[1,,,1], "x.tif") 140s + xp = read_stars("x.tif", proxy = TRUE) 140s + xm = read_stars("x.tif", proxy = FALSE) 140s + em = st_extract(xm, pts) 140s + if (utils::packageVersion("sf") >= "0.9-7") { 140s + ep = st_extract(xp, pts) 140s + print(all.equal(ep, em, check.attributes = TRUE)) 140s + } 140s + 140s + # multiple-file attributes: 140s + x = c( 140s + "avhrr-only-v2.19810901.nc", 140s + "avhrr-only-v2.19810902.nc", 140s + "avhrr-only-v2.19810903.nc", 140s + "avhrr-only-v2.19810904.nc", 140s + "avhrr-only-v2.19810905.nc", 140s + "avhrr-only-v2.19810906.nc", 140s + "avhrr-only-v2.19810907.nc", 140s + "avhrr-only-v2.19810908.nc", 140s + "avhrr-only-v2.19810909.nc" 140s + ) 140s + file_list = system.file(paste0("netcdf/", x), package = "starsdata") 140s + if (!identical(file_list, "")) { 140s + y = read_stars(file_list, quiet = TRUE) 140s + print(y) 140s + st_crs(y) = "OGC:CRS84" 140s + pts = st_sample(st_as_sfc(st_bbox(y)), 10) 140s + em = st_extract(y, pts) 140s + 140s + (y = read_stars(file_list, quiet = TRUE, proxy = TRUE)) 140s + print(y) 140s + st_crs(y) = "OGC:CRS84" 140s + if (utils::packageVersion("sf") >= "0.9-7") { 140s + ep = st_extract(y, pts) 140s + print(all.equal(em, ep)) 140s + } 140s + } 140s + 140s + # nearest & bilinear comparison: 140s + if (utils::packageVersion("sf") >= "0.9-7") { 140s + set.seed(12331) 140s + s = st_as_stars(matrix(rnorm(16), 4)) 140s + pts = st_sample(st_as_sfc(st_bbox(s)), 10000, type = "regular") 140s + s1 = st_extract(s, pts, bilinear = FALSE) 140s + s2 = st_extract(s, pts, bilinear = TRUE) 140s + s1$s2 = s2[[1]] 140s + names(s1)[c(1,3)] = c("nearest", "bilinear") 140s + print(s1[sample(10000, 5),]) 140s + } 140s + } 140s > 140s BEGIN TEST gridtypes.R 140s 140s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 140s Copyright (C) 2024 The R Foundation for Statistical Computing 140s Platform: x86_64-pc-linux-gnu 140s 140s R is free software and comes with ABSOLUTELY NO WARRANTY. 140s You are welcome to redistribute it under certain conditions. 140s Type 'license()' or 'licence()' for distribution details. 140s 140s R is a collaborative project with many contributors. 140s Type 'contributors()' for more information and 140s 'citation()' on how to cite R or R packages in publications. 140s 140s Type 'demo()' for some demos, 'help()' for on-line help, or 140s 'help.start()' for an HTML browser interface to help. 140s Type 'q()' to quit R. 140s 140s > suppressPackageStartupMessages(library(stars)) 141s > 141s > # regular, but not spatial: 141s > d = st_dimensions(a = 1:3, b = 1:3, band = c("foo", "bar")) 141s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 141s stars object with 3 dimensions and 1 attribute 141s attribute(s): 141s Min. 1st Qu. Median Mean 3rd Qu. Max. 141s X 1 5.25 9.5 9.5 13.75 18 141s dimension(s): 141s from to offset delta point values 141s a 1 3 1 1 FALSE NULL 141s b 1 3 1 1 FALSE NULL 141s band 1 2 NA NA FALSE foo, bar 141s > as.data.frame(st, add_max=FALSE)[1:4,] 141s a b band X 141s 1 1 1 foo 1 141s 2 2 1 foo 2 141s 3 3 1 foo 3 141s 4 1 2 foo 4 141s > try(x <- st_bbox(st)) # error 141s > 141s > # regular, geotransform: 141s > d = st_dimensions(x = 1:3, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 141s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 141s Error in st_bbox.dimensions(st_dimensions(obj), ...) : 141s dimensions table does not have x & y, nor an sfc dimension 141s stars object with 3 dimensions and 1 attribute 141s attribute(s): 141s Min. 1st Qu. Median Mean 3rd Qu. Max. 141s X 1 5.25 9.5 9.5 13.75 18 141s dimension(s): 141s from to offset delta point values x/y 141s x 1 3 1 1 FALSE NULL [x] 141s y 1 3 1 1 FALSE NULL [y] 141s band 1 2 NA NA FALSE foo, bar 141s > as.data.frame(st, add_max=FALSE)[1:4,] 141s x y band X 141s 1 1.5 1.5 foo 1 141s 2 2.5 1.5 foo 2 141s 3 3.5 1.5 foo 3 141s 4 1.5 2.5 foo 4 141s > as.data.frame(st, add_max=TRUE)[1:4,] 141s x y band x_max y_max X 141s 1 1 1 foo 2 2 1 141s 2 2 1 foo 3 2 2 141s 3 3 1 foo 4 2 3 141s 4 1 2 foo 2 3 4 141s > st_bbox(st) 141s xmin ymin xmax ymax 141s 1 1 4 4 141s > 141s > # rectilinear with offset given: 141s > xd = c(1, 2, 4) 141s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 141s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 141s stars object with 3 dimensions and 1 attribute 141s attribute(s): 141s Min. 1st Qu. Median Mean 3rd Qu. Max. 141s X 1 5.25 9.5 9.5 13.75 18 141s dimension(s): 141s from to offset delta point values x/y 141s x 1 3 NA NA FALSE [1,2), [2,4), [4,6) [x] 141s y 1 3 1 1 FALSE NULL [y] 141s band 1 2 NA NA FALSE foo, bar 141s > as.data.frame(st, add_max=FALSE)[1:4,] 141s x y band X 141s 1 1.5 1.5 foo 1 141s 2 3.0 1.5 foo 2 141s 3 5.0 1.5 foo 3 141s 4 1.5 2.5 foo 4 141s > as.data.frame(st, add_max=TRUE)[1:4,] 141s x y band x_max y_max X 141s 1 1 1 foo 2 2 1 141s 2 2 1 foo 4 2 2 141s 3 4 1 foo 6 2 3 141s 4 1 2 foo 2 3 4 141s > st_bbox(st) 141s xmin ymin xmax ymax 141s 1 1 6 4 141s > 141s > # rectilinear with midpoints given: 141s > xd = c(1, 2, 4) 141s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), cell_midpoints = TRUE) 141s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 141s stars object with 3 dimensions and 1 attribute 141s attribute(s): 141s Min. 1st Qu. Median Mean 3rd Qu. Max. 141s X 1 5.25 9.5 9.5 13.75 18 141s dimension(s): 141s from to offset delta point values x/y 141s x 1 3 NA NA FALSE [0.5,1.5), [1.5,3.0), [3.0,5.0) [x] 141s y 1 3 0.5 1 FALSE NULL [y] 141s band 1 2 NA NA FALSE foo, bar 141s > as.data.frame(st, add_max=FALSE)[1:4,] 141s x y band X 141s 1 1.00 1 foo 1 141s 2 2.25 1 foo 2 141s 3 4.00 1 foo 3 141s 4 1.00 2 foo 4 141s > as.data.frame(st, add_max=TRUE)[1:4,] 141s x y band x_max y_max X 141s 1 0.5 0.5 foo 1.5 1.5 1 141s 2 1.5 0.5 foo 3.0 1.5 2 141s 3 3.0 0.5 foo 5.0 1.5 3 141s 4 0.5 1.5 foo 1.5 2.5 4 141s > st_bbox(st) 141s xmin ymin xmax ymax 141s 0.5 0.5 5.0 3.5 141s > 141s > # rectilinear with midpoints given, point support 141s > xd = c(1, 2, 4) 141s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), cell_midpoints = TRUE, point = TRUE) 141s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 141s stars object with 3 dimensions and 1 attribute 141s attribute(s): 141s Min. 1st Qu. Median Mean 3rd Qu. Max. 141s X 1 5.25 9.5 9.5 13.75 18 141s dimension(s): 141s from to offset delta point values x/y 141s x 1 3 NA NA TRUE 1, 2, 4 [x] 141s y 1 3 0.5 1 TRUE NULL [y] 141s band 1 2 NA NA TRUE foo, bar 141s > as.data.frame(st, add_max=FALSE)[1:4,] 141s x y band X 141s 1 1 1 foo 1 141s 2 2 1 foo 2 141s 3 4 1 foo 3 141s 4 1 2 foo 4 141s > as.data.frame(st, add_max=TRUE)[1:4,] 141s x y band x_max y_max X 141s 1 1 0.5 foo 1 1.5 1 141s 2 2 0.5 foo 2 1.5 2 141s 3 4 0.5 foo 4 1.5 3 141s 4 1 1.5 foo 1 2.5 4 141s > st_bbox(st) 141s xmin ymin xmax ymax 141s 1.0 0.5 4.0 3.5 141s > 141s > # rectilinear with start/end given: 141s > #xd = stars:::make_intervals(start = c(1,2,4), end = c(2, 4, 8)) 141s > xd = c(1, 2, 4, 8) # one more than dim of the data array 141s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 141s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 141s stars object with 3 dimensions and 1 attribute 141s attribute(s): 141s Min. 1st Qu. Median Mean 3rd Qu. Max. 141s X 1 5.25 9.5 9.5 13.75 18 141s dimension(s): 141s from to offset delta point values x/y 141s x 1 3 NA NA FALSE [1,2), [2,4), [4,8) [x] 141s y 1 3 1 1 FALSE NULL [y] 141s band 1 2 NA NA FALSE foo, bar 141s > as.data.frame(st, add_max=FALSE)[1:4,] 141s x y band X 141s 1 1.5 1.5 foo 1 141s 2 3.0 1.5 foo 2 141s 3 6.0 1.5 foo 3 141s 4 1.5 2.5 foo 4 141s > as.data.frame(st, add_max=TRUE)[1:4,] 141s x y band x_max y_max X 141s 1 1 1 foo 2 2 1 141s 2 2 1 foo 4 2 2 141s 3 4 1 foo 8 2 3 141s 4 1 2 foo 2 3 4 141s > st_bbox(st) 141s xmin ymin xmax ymax 141s 1 1 8 4 141s > 141s > # with sfc: 141s > sfc = st_sfc(st_point(0:1), st_point(2:1), st_point(4:3)) 141s > d = st_dimensions(x = sfc, y = 1:3, band = c("foo", "bar")) 141s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 141s stars object with 3 dimensions and 1 attribute 141s attribute(s): 141s Min. 1st Qu. Median Mean 3rd Qu. Max. 141s X 1 5.25 9.5 9.5 13.75 18 141s dimension(s): 141s from to offset delta point values 141s x 1 3 NA NA TRUE POINT (0 1),...,POINT (4 3) 141s y 1 3 1 1 FALSE NULL 141s band 1 2 NA NA FALSE foo, bar 141s > as.data.frame(st, add_max=FALSE)[1:4,] 141s x y band X 141s 1 POINT (0 1) 1 foo 1 141s 2 POINT (2 1) 1 foo 2 141s 3 POINT (4 3) 1 foo 3 141s 4 POINT (0 1) 2 foo 4 141s > st_as_sf(st, long = TRUE)[1:4,] 141s Simple feature collection with 4 features and 3 fields 141s Geometry type: POINT 141s Dimension: XY 141s Bounding box: xmin: 0 ymin: 1 xmax: 4 ymax: 3 141s CRS: NA 141s y band X x 141s 1 1 foo 1 POINT (0 1) 141s 2 1 foo 2 POINT (2 1) 141s 3 1 foo 3 POINT (4 3) 141s 4 2 foo 4 POINT (0 1) 141s > st_bbox(st) 141s xmin ymin xmax ymax 141s 0 1 4 3 141s > 141s > # rotated/sheared: 141s > d = st_dimensions(x = 1:3, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), affine = c(0.2, -0.2)) 141s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 141s stars object with 3 dimensions and 1 attribute 141s attribute(s): 141s Min. 1st Qu. Median Mean 3rd Qu. Max. 141s X 1 5.25 9.5 9.5 13.75 18 141s dimension(s): 141s from to offset delta point values x/y 141s x 1 3 1 1 FALSE NULL [x] 141s y 1 3 1 1 FALSE NULL [y] 141s band 1 2 NA NA FALSE foo, bar 141s sheared raster with parameters: 0.2 -0.2 141s > as.data.frame(st, add_max=FALSE)[1:4,] 141s xError in st_coordinates.stars(x, add_max = add_max, center = center, ...) : 141s add_max will not work for rotated/shared rasters 141s y X 141s 1 1.6 1.4 1 141s 2 2.6 1.2 2 141s 3 3.6 1.0 3 141s 4 1.8 2.4 4 141s > try(as.data.frame(st, add_max=TRUE)[1:4,]) # errors 141s > st_bbox(st) 141s xmin ymin xmax ymax 141s 1.0 0.4 4.6 4.0 141s > 141s > # curvilinear: 141s > set.seed(13531) 141s > lon = st_as_stars(matrix(signif(runif(9), 2), 3, 3)) 141s > lat = st_as_stars(matrix(signif(runif(9), 2), 3, 3)) 141s > ll = setNames(c(lon, lat), c("lon", "lat")) 141s > d = st_dimensions(lon = 1:3, lat = 1:3) 141s > a = st_as_stars(list(X = array(1:9, c(3,3))), dimensions = d) 141s > (st = st_as_stars(a, curvilinear = ll)) 141s stars object with 2 dimensions and 1 attribute 141s attribute(s): 141s Min. 1st Qu. Median Mean 3rd Qu. Max. 141s X 1 3 5 5 7 9 141s dimension(s): 141s from to refsys point values x/y 141s lon 1 3 WGS 84 (CRS84) FALSE [3x3] 0.03,...,0.89 [x] 141s lat 1 3 WGS 84 (CRS84) FALSE [3x3] 0.021,...,0.89 [y] 141s curvilinear grid 141s > as.data.frame(st) 141s lon lat X 141s 1 0.89 0.250 1 141s 2 0.64 0.510 2 141s 3 0.30 0.670 3 141s 4 0.69 0.890 4 141s 5 0.47 0.890 5 141s 6 0.26 0.190 6 141s 7 0.57 0.021 7 141s 8 0.27 0.220 8 141s 9 0.03 0.340 9 141s > st_bbox(st) 141s xmin ymin xmax ymax 141s 0.030 0.021 0.890 0.890 141s > 141s > # time regular: 141s > t = as.Date("2019-01-20") + 0:3 141s > d = st_dimensions(t, sfc) 141s > (st = st_as_stars(list(a = matrix(1:12, 4, 3)), dimensions = d)) 141s stars object with 2 dimensions and 1 attribute 141s attribute(s): 141s Min. 1st Qu. Median Mean 3rd Qu. Max. 141s a 1 3.75 6.5 6.5 9.25 12 141s dimension(s): 141s from to offset delta refsys point values 141s X1 1 4 2019-01-20 1 days Date FALSE NULL 141s X2 1 3 NA NA NA TRUE POINT (0 1),...,POINT (4 3) 141s > as.data.frame(st) 141s X1 X2 a 141s 1 2019-01-20 POINT (0 1) 1 141s 2 2019-01-21 POINT (0 1) 2 141s 3 2019-01-22 POINT (0 1) 3 141s 4 2019-01-23 POINT (0 1) 4 141s 5 2019-01-20 POINT (2 1) 5 141s 6 2019-01-21 POINT (2 1) 6 141s 7 2019-01-22 POINT (2 1) 7 141s 8 2019-01-23 POINT (2 1) 8 141s 9 2019-01-20 POINT (4 3) 9 141s 10 2019-01-21 POINT (4 3) 10 141s 11 2019-01-22 POINT (4 3) 11 141s 12 2019-01-23 POINT (4 3) 12 141s > 141s > # time, rectilinear 141s > t = as.Date("2019-01-20") + c(0, 2, 3, 10) 141s > d = st_dimensions(t, sfc) 141s > (st = st_as_stars(list(a = matrix(1:12, 4, 3)), dimensions = d)) 141s stars object with 2 dimensions and 1 attribute 141s attribute(s): 141s Min. 1st Qu. Median Mean 3rd Qu. Max. 141s a 1 3.75 6.5 6.5 9.25 12 141s dimension(s): 141s from to refsys point values 141s X1 1 4 Date FALSE 2019-01-20,...,2019-01-30 141s X2 1 3 NA TRUE POINT (0 1),...,POINT (4 3) 141s > as.data.frame(st) 141s X1 X2 a 141s 1 2019-01-20 POINT (0 1) 1 141s 2 2019-01-22 POINT (0 1) 2 141s 3 2019-01-23 POINT (0 1) 3 141s 4 2019-01-30 POINT (0 1) 4 141s 5 2019-01-20 POINT (2 1) 5 141s 6 2019-01-22 POINT (2 1) 6 141s 7 2019-01-23 POINT (2 1) 7 141s 8 2019-01-30 POINT (2 1) 8 141s 9 2019-01-20 POINT (4 3) 9 141s 10 2019-01-22 POINT (4 3) 10 141s 11 2019-01-23 POINT (4 3) 11 141s 12 2019-01-30 POINT (4 3) 12 141s > 141s BEGIN TEST mdim.R 141s 141s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 141s Copyright (C) 2024 The R Foundation for Statistical Computing 141s Platform: x86_64-pc-linux-gnu 141s 141s R is free software and comes with ABSOLUTELY NO WARRANTY. 141s You are welcome to redistribute it under certain conditions. 141s Type 'license()' or 'licence()' for distribution details. 141s 141s R is a collaborative project with many contributors. 141s Type 'contributors()' for more information and 141s 'citation()' on how to cite R or R packages in publications. 141s 141s Type 'demo()' for some demos, 'help()' for on-line help, or 141s 'help.start()' for an HTML browser interface to help. 141s Type 'q()' to quit R. 141s 141s > Sys.setenv(TZ="") 141s > suppressPackageStartupMessages(library(stars)) 142s > matrix(1:4,2) 142s [,1] [,2] 142s [1,] 1 3 142s [2,] 2 4 142s > m = matrix(1:4,2) 142s > s = st_as_stars(m) 142s > 142s > s = st_set_dimensions(s, st_dimensions(s), xy = NULL) 142s > sfc = st_sfc(st_point(0:1), st_point(3:2)) 142s > s = st_set_dimensions(s, 1, sfc) |> st_set_crs(4326) 142s > tm = as.POSIXct("2023-03-04 12:35") + c(0, 3600) 142s > s = st_set_dimensions(s, 2, tm) 142s > f = tempfile(fileext = ".nc") 142s > write_mdim(s, f, as_float = FALSE) 142s Warning messages: 142s 1: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 142s GDAL Error 6: SetIndexingVariable() not implemented 142s 2: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 142s GDAL Error 6: SetIndexingVariable() not implemented 142s > s2 = read_mdim(f) 142s > #print(s2) 142s > print(all.equal(s, s2, check.attributes = FALSE)) 142s [1] TRUE 142s > print(all.equal(s, s2)) 142s [1] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"refsys\": Component \"input\": 1 string mismatch >" 142s [2] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"refsys\": Component \"wkt\": 1 string mismatch >" 142s [3] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"values\": Attributes: < Component \"crs\": Component \"input\": 1 string mismatch > >" 142s [4] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"values\": Attributes: < Component \"crs\": Component \"wkt\": 1 string mismatch > >" 142s [5] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"offset\": 'tzone' attributes are inconsistent ('' and 'UTC') >" 142s [6] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"point\": 'is.NA' value mismatch: 1 in current 0 in target >" 142s > 142s > st_crs(sfc) = st_crs(s2) 142s > st_crs(s) = st_crs(s2) 142s > tm = as.Date("2023-02-25") + 0:1 142s > sd = st_set_dimensions(s, 2, tm) 142s > print(sd) 142s stars object with 2 dimensions and 1 attribute 142s attribute(s): 142s Min. 1st Qu. Median Mean 3rd Qu. Max. 142s A1 1 1.75 2.5 2.5 3.25 4 142s dimension(s): 142s from to offset delta refsys point values 142s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 142s X2 1 2 2023-02-25 1 days Date FALSE NULL 142s > sd = st_set_dimensions(sd, 1, sfc) 142s > print(sd) 142s stars object with 2 dimensions and 1 attribute 142s attribute(s): 142s Min. 1st Qu. Median Mean 3rd Qu. Max. 142s A1 1 1.75 2.5 2.5 3.25 4 142s dimension(s): 142s from to offset delta refsys point values 142s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 142s X2 1 2 2023-02-25 1 days Date FALSE NULL 142s > f = tempfile(fileext = ".nc") 142s > write_mdim(sd, f) 142s Warning messages: 142s 1: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 142s GDAL Error 6: SetIndexingVariable() not implemented 142s 2: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 142s GDAL Error 6: SetIndexingVariable() not implemented 142s > sd2 = read_mdim(f) 142s > print(sd2) 142s stars object with 2 dimensions and 1 attribute 142s attribute(s): 142s Min. 1st Qu. Median Mean 3rd Qu. Max. 142s A1 1 1.75 2.5 2.5 3.25 4 142s dimension(s): 142s from to offset delta refsys point values 142s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 142s X2 1 2 2023-02-25 1 days Date NA NULL 142s > print(all.equal(sd, sd2, check.attributes = FALSE)) 142s [1] TRUE 142s > print(all.equal(sd, sd2)) 142s [1] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"point\": 'is.NA' value mismatch: 1 in current 0 in target >" 142s > # if (.Platform$OS.type == "unix") { 142s > # print(read_mdim(paste0("/vsizip/", (system.file("zarr/sic_daily_sample.zarr.zip", package = "stars")))) 142s > # } 142s > 142s BEGIN TEST nc.R 142s 142s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 142s Copyright (C) 2024 The R Foundation for Statistical Computing 142s Platform: x86_64-pc-linux-gnu 142s 142s R is free software and comes with ABSOLUTELY NO WARRANTY. 142s You are welcome to redistribute it under certain conditions. 142s Type 'license()' or 'licence()' for distribution details. 142s 142s R is a collaborative project with many contributors. 142s Type 'contributors()' for more information and 142s 'citation()' on how to cite R or R packages in publications. 142s 142s Type 'demo()' for some demos, 'help()' for on-line help, or 142s 'help.start()' for an HTML browser interface to help. 142s Type 'q()' to quit R. 142s 142s > # examples with the sf::nc polygon dataset NOT ABOUT NETCDF's, see e.g. stars.R netcdf.R 142s > suppressPackageStartupMessages(library(sf)) 143s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf")) 143s > m = st_set_geometry(nc, NULL) 143s > n = as.matrix(m[c("BIR74", "SID74", "NWBIR74", "BIR79", "SID79", "NWBIR79")]) 143s > dim(n) = c(county = 100, var = 3, year = 2) 143s > dimnames(n) = list(county = nc$NAME, var = c("BIR", "SID", "NWBIR"), year = c(1974, 1979)) 143s > suppressPackageStartupMessages(library(stars)) 143s > (st = st_as_stars(pop = n)) 143s stars object with 3 dimensions and 1 attribute 143s attribute(s): 143s Min. 1st Qu. Median Mean 3rd Qu. Max. 143s pop 0 8 538 1657.032 1784 30757 143s dimension(s): 143s from to values 143s county 1 100 Ashe,...,Brunswick 143s var 1 3 BIR , SID , NWBIR 143s year 1 2 1974, 1979 143s > foo <- st %>% st_set_dimensions(1, st_geometry(nc)) # %>% st_set_dimensions(3, c(1974, 1979)) 143s > st %>% st_set_dimensions(1, st_geometry(nc)) %>% st_set_dimensions(names = c("geometries", "var", "year")) 143s stars object with 3 dimensions and 1 attribute 143s attribute(s): 143s Min. 1st Qu. Median Mean 3rd Qu. Max. 143s pop 0 8 538 1657.032 1784 30757 143s dimension(s): 143s from to refsys point 143s geometries 1 100 NAD27 FALSE 143s var 1 3 NA NA 143s year 1 2 NA NA 143s values 143s geometries MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 143s var BIR , SID , NWBIR 143s year 1974, 1979 143s > foo 143s stars object with 3 dimensions and 1 attribute 143s attribute(s): 143s Min. 1st Qu. Median Mean 3rd Qu. Max. 143s pop 0 8 538 1657.032 1784 30757 143s dimension(s): 143s from to refsys point 143s county 1 100 NAD27 FALSE 143s var 1 3 NA NA 143s year 1 2 NA NA 143s values 143s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 143s var BIR , SID , NWBIR 143s year 1974, 1979 143s > st_bbox(foo) 143s xmin ymin xmax ymax 143s -84.32385 33.88199 -75.45698 36.58965 143s > (x = st_as_sf(foo)) 143s Simple feature collection with 100 features and 6 fields 143s Geometry type: MULTIPOLYGON 143s Dimension: XY 143s Bounding box: xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965 143s Geodetic CRS: NAD27 143s First 10 features: 143s BIR.1974 SID.1974 NWBIR.1974 BIR.1979 SID.1979 NWBIR.1979 143s 1 1091 1 10 1364 0 19 143s 2 487 0 10 542 3 12 143s 3 3188 5 208 3616 6 260 143s 4 508 1 123 830 2 145 143s 5 1421 9 1066 1606 3 1197 143s 6 1452 7 954 1838 5 1237 143s 7 286 0 115 350 2 139 143s 8 420 0 254 594 2 371 143s 9 968 4 748 1190 2 844 143s 10 1612 1 160 2038 5 176 143s county 143s 1 MULTIPOLYGON (((-81.47276 3... 143s 2 MULTIPOLYGON (((-81.23989 3... 143s 3 MULTIPOLYGON (((-80.45634 3... 143s 4 MULTIPOLYGON (((-76.00897 3... 143s 5 MULTIPOLYGON (((-77.21767 3... 143s 6 MULTIPOLYGON (((-76.74506 3... 143s 7 MULTIPOLYGON (((-76.00897 3... 143s 8 MULTIPOLYGON (((-76.56251 3... 143s 9 MULTIPOLYGON (((-78.30876 3... 143s 10 MULTIPOLYGON (((-80.02567 3... 143s > frac = function(x) x[2] / x[1] 143s > frac2 = function(x) c(sidsr = x[2] / x[1], nwbr = x[3] / x[1]) 143s > frac2an = function(x) c(x[2] / x[1], x[3] / x[1]) 143s > st_apply(foo, c(1,3), frac) 143s stars object with 2 dimensions and 1 attribute 143s attribute(s): 143s Min. 1st Qu. Median Mean 3rd Qu. Max. 143s frac 0 0.001197874 0.001930504 0.002042241 0.002599348 0.00955414 143s dimension(s): 143s from to refsys point 143s county 1 100 NAD27 FALSE 143s year 1 2 NA NA 143s values 143s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 143s year 1974, 1979 143s > st_apply(foo, c(1,3), frac2) 143s stars object with 3 dimensions and 1 attribute 143s attribute(s): 143s Min. 1st Qu. Median Mean 3rd Qu. Max. 143s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 143s dimension(s): 143s from to refsys point 143s frac2 1 2 NA NA 143s county 1 100 NAD27 FALSE 143s year 1 2 NA NA 143s values 143s frac2 sidsr, nwbr 143s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 143s year 1974, 1979 143s > st_apply(foo, c(1,3), frac2an) 143s stars object with 3 dimensions and 1 attribute 143s attribute(s): 143s Min. 1st Qu. Median Mean 3rd Qu. Max. 143s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 143s dimension(s): 143s from to refsys point 143s frac2an 1 2 NA NA 143s county 1 100 NAD27 FALSE 143s year 1 2 NA NA 143s values 143s frac2an NULL 143s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 143s year 1974, 1979 143s > library(abind) 143s > (x = aperm(st_apply(foo, c(1,3), frac2), c(2,3,1))) 143s stars object with 3 dimensions and 1 attribute 143s attribute(s): 143s Min. 1st Qu. Median Mean 3rd Qu. Max. 143s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 143s dimension(s): 143s from to refsys point 143s county 1 100 NAD27 FALSE 143s year 1 2 NA NA 143s frac2 1 2 NA NA 143s values 143s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 143s year 1974, 1979 143s frac2 sidsr, nwbr 143s > y = aperm(st_apply(foo, c(1,3), frac2), c("county","year","frac2")) 143s > all.equal(st_dimensions(x), st_dimensions(y)) 143s [1] TRUE 143s > 143s > split(foo, 2) 143s stars object with 2 dimensions and 3 attributes 143s attribute(s): 143s Min. 1st Qu. Median Mean 3rd Qu. Max. 143s BIR 248 1176.75 2265 3761.770 4450.75 30757 143s SID 0 2.00 5 7.515 9.00 57 143s NWBIR 1 206.00 742 1201.810 1315.75 11631 143s dimension(s): 143s from to refsys point 143s county 1 100 NAD27 FALSE 143s year 1 2 NA NA 143s values 143s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 143s year 1974, 1979 143s > split(foo, 3) 143s stars object with 2 dimensions and 2 attributes 143s attribute(s): 143s Min. 1st Qu. Median Mean 3rd Qu. Max. 143s 1974 0 8 501.5 1452.367 1580.50 21588 143s 1979 0 9 614.0 1861.697 2040.25 30757 143s dimension(s): 143s from to refsys point 143s county 1 100 NAD27 FALSE 143s var 1 3 NA NA 143s values 143s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 143s var BIR , SID , NWBIR 143s > 143s > st_crs(foo) 143s Coordinate Reference System: 143s User input: NAD27 143s wkt: 143s GEOGCRS["NAD27", 143s DATUM["North American Datum 1927", 143s ELLIPSOID["Clarke 1866",6378206.4,294.978698213898, 143s LENGTHUNIT["metre",1]]], 143s PRIMEM["Greenwich",0, 143s ANGLEUNIT["degree",0.0174532925199433]], 143s CS[ellipsoidal,2], 143s AXIS["geodetic latitude (Lat)",north, 143s ORDER[1], 143s ANGLEUNIT["degree",0.0174532925199433]], 143s AXIS["geodetic longitude (Lon)",east, 143s ORDER[2], 143s ANGLEUNIT["degree",0.0174532925199433]], 143s USAGE[ 143s SCOPE["Geodesy."], 143s AREA["North and central America: Antigua and Barbuda - onshore. Bahamas - onshore plus offshore over internal continental shelf only. Belize - onshore. British Virgin Islands - onshore. Canada onshore - Alberta, British Columbia, Manitoba, New Brunswick, Newfoundland and Labrador, Northwest Territories, Nova Scotia, Nunavut, Ontario, Prince Edward Island, Quebec, Saskatchewan and Yukon - plus offshore east coast. Cuba - onshore and offshore. El Salvador - onshore. Guatemala - onshore. Honduras - onshore. Panama - onshore. Puerto Rico - onshore. Mexico - onshore plus offshore east coast. Nicaragua - onshore. United States (USA) onshore and offshore - Alabama, Alaska, Arizona, Arkansas, California, Colorado, Connecticut, Delaware, Florida, Georgia, Idaho, Illinois, Indiana, Iowa, Kansas, Kentucky, Louisiana, Maine, Maryland, Massachusetts, Michigan, Minnesota, Mississippi, Missouri, Montana, Nebraska, Nevada, New Hampshire, New Jersey, New Mexico, New York, North Carolina, North Dakota, Ohio, Oklahoma, Oregon, Pennsylvania, Rhode Island, South Carolina, South Dakota, Tennessee, Texas, Utah, Vermont, Virginia, Washington, West Virginia, Wisconsin and Wyoming - plus offshore . US Virgin Islands - onshore."], 143s BBOX[7.15,167.65,83.17,-47.74]], 143s ID["EPSG",4267]] 143s > plot(foo) 143s > 143s > # subset vector cube: 143s > foo[nc[1]] 143s stars object with 3 dimensions and 1 attribute 143s attribute(s): 143s Min. 1st Qu. Median Mean 3rd Qu. Max. 143s pop 0 8 538 1657.032 1784 30757 143s dimension(s): 143s from to refsys point 143s county 1 100 NAD27 FALSE 143s var 1 3 NA NA 143s year 1 2 NA NA 143s values 143s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 143s var BIR , SID , NWBIR 143s year 1974, 1979 143s > 143s BEGIN TEST plot.R 144s 144s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 144s Copyright (C) 2024 The R Foundation for Statistical Computing 144s Platform: x86_64-pc-linux-gnu 144s 144s R is free software and comes with ABSOLUTELY NO WARRANTY. 144s You are welcome to redistribute it under certain conditions. 144s Type 'license()' or 'licence()' for distribution details. 144s 144s R is a collaborative project with many contributors. 144s Type 'contributors()' for more information and 144s 'citation()' on how to cite R or R packages in publications. 144s 144s Type 'demo()' for some demos, 'help()' for on-line help, or 144s 'help.start()' for an HTML browser interface to help. 144s Type 'q()' to quit R. 144s 144s > suppressPackageStartupMessages(library(stars)) 144s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 144s + data(air) # this loads several datasets in .GlobalEnv 144s + dim(air) 144s + d = st_dimensions(station = st_as_sfc(stations), time = dates) 144s + aq = st_as_stars(list(PM10 = air), dimensions = d) 144s + image(aperm(log(aq), 2:1), main = "NA pattern (white) in PM10 station time series") 144s + st_geometry(aq) 144s + } 145s Geometry set for 70 features 145s Geometry type: POINT 145s Dimension: XY 145s Bounding box: xmin: 6.28107 ymin: 47.80847 xmax: 14.78617 ymax: 54.92497 145s Geodetic CRS: +proj=longlat +datum=WGS84 +no_defs 145s First 5 geometries: 145s POINT (9.585911 53.67057) 145s POINT (9.68503 53.52418) 145s > 145s > csv = system.file("tif/ESACCI-LC-Legend.csv", package = "starsdata") 145s > if (csv != "") { 145s + rgb = read.csv(csv, header = TRUE, sep = ";") 145s + luc = read_stars(system.file("tif/LUC3.tif", package = "starsdata")) 145s + plot(luc, rgb = rgb, axes = TRUE, key.pos = NULL) 145s + } 145s > 145s > # https://github.com/r-spatial/stars/issues/233 : 145s > nc = read_sf(system.file("shape/nc.shp", package = "sf")) 145s POINT (9.791584 54.07312) 145s POINT (13.64701 52.44775) 145s POINT (13.29635 52.65315) 145s > output = st_as_stars(st_bbox(nc), nx = 1, ny = 1, values = 1) 145s > plot(output) 145s > 145s Warning message: 145s In plot.stars(output) : 145s breaks="quantile" leads to a single class; maybe try breaks="equal" instead? 145s BEGIN TEST predict.R 146s 146s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 146s Copyright (C) 2024 The R Foundation for Statistical Computing 146s Platform: x86_64-pc-linux-gnu 146s 146s R is free software and comes with ABSOLUTELY NO WARRANTY. 146s You are welcome to redistribute it under certain conditions. 146s Type 'license()' or 'licence()' for distribution details. 146s 146s R is a collaborative project with many contributors. 146s Type 'contributors()' for more information and 146s 'citation()' on how to cite R or R packages in publications. 146s 146s Type 'demo()' for some demos, 'help()' for on-line help, or 146s 'help.start()' for an HTML browser interface to help. 146s Type 'q()' to quit R. 146s 146s > suppressPackageStartupMessages(library(stars)) 146s > # predict: 146s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 146s > (x = read_stars(tif)) 146s stars object with 3 dimensions and 1 attribute 146s attribute(s): 146s Min. 1st Qu. Median Mean 3rd Qu. Max. 146s L7_ETMs.tif 1 54 69 68.91242 86 255 146s dimension(s): 146s from to offset delta refsys point x/y 146s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 146s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 146s band 1 6 NA NA NA NA 146s > st_crs(x) = st_crs(x) # cleans trailing space 146s > model = lm(x~L7_ETMs.tif, head(as.data.frame(x), 50)) 146s > x = predict(x, model) 147s > 147s > (y = read_stars(tif, proxy = TRUE)) 147s stars_proxy object with 1 attribute in 1 file(s): 147s $L7_ETMs.tif 147s [1] "[...]/L7_ETMs.tif" 147s 147s dimension(s): 147s from to offset delta refsys point x/y 147s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 147s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 147s band 1 6 NA NA NA NA 147s > (yp = predict(y, model)) 147s stars_proxy object with 1 attribute in 1 file(s): 147s $L7_ETMs.tif 147s [1] "[...]/L7_ETMs.tif" 147s 147s dimension(s): 147s from to offset delta refsys point x/y 147s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 147s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 147s band 1 6 NA NA NA NA 147s call_list: 147s [[1]] 147s predict(object = object, model = model) 147s attr(,".Environment") 147s 147s 147s This object has pending lazy operations: dimensions as printed may not reflect this. 147s > all.equal(x, st_as_stars(yp)) 148s [1] TRUE 148s > 148s > yy = st_set_dimensions(y, 3, values = paste0("band", 1:6)) 148s > (y_spl = split(yy, 3)) 148s stars_proxy object with 1 attribute in 1 file(s): 148s $L7_ETMs.tif 148s [1] "[...]/L7_ETMs.tif" 148s 148s dimension(s): 148s from to offset delta refsys point values 148s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 148s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 148s band 1 6 NA NA NA NA band1,...,band6 148s x/y 148s x [x] 148s y [y] 148s band 148s call_list: 148s [[1]] 148s split(x = x, 3) 148s attr(,".Environment") 148s 148s 148s This object has pending lazy operations: dimensions as printed may not reflect this. 148s > as.data.frame(st_as_stars(split(yy, 3)))[1:3,] 148s x y band1 band2 band3 band4 band5 band6 148s 1 288790.5 9120747 69 56 46 79 86 46 148s 2 288819.0 9120747 69 57 49 75 88 49 148s 3 288847.5 9120747 63 52 45 66 75 41 148s > 148s BEGIN TEST proxy.R 148s 148s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 148s Copyright (C) 2024 The R Foundation for Statistical Computing 148s Platform: x86_64-pc-linux-gnu 148s 148s R is free software and comes with ABSOLUTELY NO WARRANTY. 148s You are welcome to redistribute it under certain conditions. 148s Type 'license()' or 'licence()' for distribution details. 148s 148s R is a collaborative project with many contributors. 148s Type 'contributors()' for more information and 148s 'citation()' on how to cite R or R packages in publications. 148s 148s Type 'demo()' for some demos, 'help()' for on-line help, or 148s 'help.start()' for an HTML browser interface to help. 148s Type 'q()' to quit R. 148s 148s > Sys.setenv(TZ="UTC") 148s > suppressPackageStartupMessages(library(sf)) 149s > suppressPackageStartupMessages(library(stars)) 149s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 149s > (r = read_stars(tif, proxy = TRUE)) 149s stars_proxy object with 1 attribute in 1 file(s): 149s $L7_ETMs.tif 149s [1] "[...]/L7_ETMs.tif" 149s 149s dimension(s): 149s from to offset delta refsys point x/y 149s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 149s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 149s band 1 6 NA NA NA NA 149s > if (interactive()) { 149s + plot(r) 149s + } 149s > dim(r) 149s x y band 149s 349 352 6 149s > r[,,,2:3] 149s stars_proxy object with 1 attribute in 1 file(s): 149s $L7_ETMs.tif 149s [1] "[...]/L7_ETMs.tif" 149s 149s dimension(s): 149s from to offset delta refsys point x/y 149s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 149s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 149s band 2 3 NA NA NA NA 149s > r+r 149s stars_proxy object with 1 attribute in 1 file(s): 149s $L7_ETMs.tif 149s [1] "[...]/L7_ETMs.tif" 149s 149s dimension(s): 149s from to offset delta refsys point x/y 149s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 149s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 149s band 1 6 NA NA NA NA 149s call_list: 149s [[1]] 149s e1 + e2 149s attr(,".Environment") 149s 149s 149s This object has pending lazy operations: dimensions as printed may not reflect this. 149s > st_as_stars(sin(r), downsample = 2) 149s stars object with 3 dimensions and 1 attribute 149s attribute(s): 149s Min. 1st Qu. Median Mean 3rd Qu. Max. 149s L7_ETMs.tif -0.9999902 -0.676772 0.0353983 0.01655317 0.7210377 0.9999119 149s dimension(s): 149s from to offset delta refsys point x/y 149s x 1 117 288776 85.01 SIRGAS 2000 / UTM zone 25S FALSE [x] 149s y 1 118 9120761 -85.02 SIRGAS 2000 / UTM zone 25S FALSE [y] 149s band 1 6 NA NA NA NA 149s > aperm(r, c(3,2,1)) 149s stars_proxy object with 1 attribute in 1 file(s): 149s $L7_ETMs.tif 149s [1] "[...]/L7_ETMs.tif" 149s 149s dimension(s): 149s from to offset delta refsys point x/y 149s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 149s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 149s band 1 6 NA NA NA NA 149s call_list: 149s [[1]] 149s aperm(a = a, perm = perm) 149s attr(,".Environment") 149s 149s 149s This object has pending lazy operations: dimensions as printed may not reflect this. 149s > if (interactive()) { 149s + plot(r) 149s + } 149s > (xx = c(r,r)) 149s stars_proxy object with 2 attributes in 2 file(s): 149s $L7_ETMs.tif 149s [1] "[...]/L7_ETMs.tif" 149s 149s $L7_ETMs.tif 149s [1] "[...]/L7_ETMs.tif" 149s 149s dimension(s): 149s from to offset delta refsys point x/y 149s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 149s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 149s band 1 6 NA NA NA NA 149s > st_redimension(xx) 149s stars_proxy object with 1 attribute in 2 file(s): 149s $L7_ETMs.tif.L7_ETMs.tif 149s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 149s 149s dimension(s): 149s from to offset delta refsys point 149s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 149s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 149s band 1 6 NA NA NA NA 149s new_dim 1 2 NA NA NA NA 149s values x/y 149s x NULL [x] 149s y NULL [y] 149s band NULL 149s new_dim L7_ETMs.tif, L7_ETMs.tif 149s > st_as_stars(r) 149s stars object with 3 dimensions and 1 attribute 149s attribute(s): 149s Min. 1st Qu. Median Mean 3rd Qu. Max. 149s L7_ETMs.tif 1 54 69 68.91242 86 255 149s dimension(s): 149s from to offset delta refsys point x/y 149s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 149s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 149s band 1 6 NA NA NA NA 149s > (y = st_apply(r, 1:2, max)) 149s stars_proxy object with 1 attribute in 1 file(s): 149s $L7_ETMs.tif 149s [1] "[...]/L7_ETMs.tif" 149s 149s dimension(s): 149s from to offset delta refsys point x/y 149s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 149s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 149s band 1 6 NA NA NA NA 149s call_list: 149s [[1]] 149s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 149s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 149s attr(,".Environment") 149s 149s 149s This object has pending lazy operations: dimensions as printed may not reflect this. 149s > (yy = st_as_stars(y, downsample = 1)) 149s stars object with 2 dimensions and 1 attribute 149s attribute(s): 149s Min. 1st Qu. Median Mean 3rd Qu. Max. 149s max 55 85 96 99.38568 113 255 149s dimension(s): 150s from to offset delta refsys point x/y 150s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE [x] 150s y 1 176 9120761 -57 SIRGAS 2000 / UTM zone 25S FALSE [y] 150s > (y = adrop(st_apply(r, c("x", "y"), max))) 150s stars_proxy object with 1 attribute in 1 file(s): 150s $L7_ETMs.tif 150s [1] "[...]/L7_ETMs.tif" 150s 150s dimension(s): 150s from to offset delta refsys point x/y 150s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 150s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 150s band 1 6 NA NA NA NA 150s call_list: 150s [[1]] 150s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 150s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 150s attr(,".Environment") 150s 150s 150s [[2]] 150s adrop(x = x, drop = drop) 150s attr(,".Environment") 150s 150s 150s This object has pending lazy operations: dimensions as printed may not reflect this. 150s > (yy = st_as_stars(y, downsample = 1)) 150s stars object with 2 dimensions and 1 attribute 150s attribute(s): 150s Min. 1st Qu. Median Mean 3rd Qu. Max. 150s max 55 85 96 99.38568 113 255 150s dimension(s): 150s from to offset delta refsys point x/y 150s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE [x] 150s y 1 176 9120761 -57 SIRGAS 2000 / UTM zone 25S FALSE [y] 150s > plot(yy) 150s > (y = adrop(st_apply(r, c("x", "band"), max))) 150s stars_proxy object with 1 attribute in 1 file(s): 150s $L7_ETMs.tif 150s [1] "[...]/L7_ETMs.tif" 150s 150s dimension(s): 150s from to offset delta refsys point x/y 150s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 150s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 150s band 1 6 NA NA NA NA 150s call_list: 150s [[1]] 150s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 150s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 150s attr(,".Environment") 150s 150s 150s [[2]] 150s adrop(x = x, drop = drop) 150s attr(,".Environment") 150s 150s 150s This object has pending lazy operations: dimensions as printed may not reflect this. 150s > (yy = st_as_stars(y, downsample = 1)) 150s stars object with 2 dimensions and 1 attribute 150s attribute(s): 150s Min. 1st Qu. Median Mean 3rd Qu. Max. 150s max 77 111 133 137.8505 157 255 150s dimension(s): 150s from to offset delta refsys point 150s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE 150s band 1 6 NA NA NA NA 150s > rm(yy) 150s > 150s > (xx = c(r,r)) 150s Warning message: 150s In FUN(X[[i]], ...) : 150s st_apply on x/y dimensions applied to downsampled image(s) 150s stars_proxy object with 2 attributes in 2 file(s): 150s $L7_ETMs.tif 150s [1] "[...]/L7_ETMs.tif" 150s 150s $L7_ETMs.tif 150s [1] "[...]/L7_ETMs.tif" 150s 150s dimension(s): 150s from to offset delta refsys point x/y 150s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 150s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 150s band 1 6 NA NA NA NA 150s > names(xx) = c("a", "b") 150s > xx["a"] 150s stars_proxy object with 1 attribute in 1 file(s): 150s $a 150s [1] "[...]/L7_ETMs.tif" 150s 150s dimension(s): 150s from to offset delta refsys point x/y 150s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 150s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 150s band 1 6 NA NA NA NA 150s > pt = st_point(c(x = 290462.103109179, y = 9114202.32594085)) 150s > buf = st_buffer(st_sfc(pt, crs = st_crs(r)), 1500) 150s > buf = st_sfc(st_polygon(list(st_buffer(pt, 1500)[[1]], st_buffer(pt, 1000)[[1]])), 150s + crs = st_crs(r)) 150s > r = r[buf] # crops 150s > r = r[buf, epsilon = 1e-5] # crops with shrinked bounding box 150s > 150s > # c: 150s > f = system.file("netcdf/avhrr-only-v2.19810902.nc", package = "starsdata") 150s > if (FALSE && f != "") { 150s + files = c("avhrr-only-v2.19810901.nc", 150s + "avhrr-only-v2.19810902.nc", 150s + "avhrr-only-v2.19810903.nc", 150s + "avhrr-only-v2.19810904.nc", 150s + "avhrr-only-v2.19810905.nc", 150s + "avhrr-only-v2.19810906.nc", 150s + "avhrr-only-v2.19810907.nc", 150s + "avhrr-only-v2.19810908.nc", 150s + "avhrr-only-v2.19810909.nc") 150s + l = list() 150s + for (f in files) { 150s + from = system.file(paste0("netcdf/", f), package = "starsdata") 150s + l[[f]] = read_stars(from, sub = c("sst", "anom"), proxy = TRUE) 150s + } 150s + ret = do.call(c, l) 150s + print(ret) 150s + all = system.file(paste0("netcdf/", files), package = "starsdata") 150s + ret = read_stars(all, sub = c("sst", "anom")) 150s + print(ret) 150s + print(st_redimension(ret)) # collapse the two attributes into new dimension 150s + 150s + try(ret <- c(l[[1]], l[[2]], l[[3]], along = list(times = as.Date("1981-09-01") + 0:2))) 150s + #print(ret) 150s + #ret = adrop(adrop(c(l[[1]], l[[2]], l[[3]], along = "times"))) 150s + #print(ret) 150s + ret <- st_redimension(l[[1]], along = list(times = as.Date("1981-09-01") + 0:1)) 150s + print(ret) 150s + } 150s > 150s > # demonstrate that environments work: 150s > x = read_stars(tif, proxy = TRUE) 150s > f = function(x) { 150s + g = function(xx) { 150s + ndvi = function(z1, z2, z3, z4, z5, z6) (z2-z1)/(z2+z1) 150s + st_apply(xx, 1:2, ndvi) 150s + } 150s + g(x) 150s + } 150s > (x = f(x)) 150s stars_proxy object with 1 attribute in 1 file(s): 150s $L7_ETMs.tif 150s [1] "[...]/L7_ETMs.tif" 150s 150s dimension(s): 150s from to offset delta refsys point x/y 150s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 150s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 150s band 1 6 NA NA NA NA 150s call_list: 150s [[1]] 150s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 150s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 150s attr(,".Environment") 150s 150s 150s This object has pending lazy operations: dimensions as printed may not reflect this. 150s > st_as_stars(x) 150s stars object with 2 dimensions and 1 attribute 150s attribute(s): 150s Min. 1st Qu. Median Mean 3rd Qu. Max. 150s ndvi -0.2828283 -0.1081081 -0.08287293 -0.08464615 -0.05882353 0.09259259 150s dimension(s): 150s from to offset delta refsys point x/y 150s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 150s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 150s > 150s BEGIN TEST raster.R 150s 150s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 150s Copyright (C) 2024 The R Foundation for Statistical Computing 150s Platform: x86_64-pc-linux-gnu 150s 150s R is free software and comes with ABSOLUTELY NO WARRANTY. 150s You are welcome to redistribute it under certain conditions. 150s Type 'license()' or 'licence()' for distribution details. 150s 150s R is a collaborative project with many contributors. 150s Type 'contributors()' for more information and 150s 'citation()' on how to cite R or R packages in publications. 150s 150s Type 'demo()' for some demos, 'help()' for on-line help, or 150s 'help.start()' for an HTML browser interface to help. 150s Type 'q()' to quit R. 150s 150s > options(rgdal_show_exportToProj4_warnings = "none") 150s > suppressPackageStartupMessages(library(stars)) 151s > 151s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require("raster", quietly = TRUE) && 151s + suppressPackageStartupMessages(require("terra", quietly = TRUE))) { 151s + 151s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 151s + (x = read_stars(tif)) 151s + (r = as(x, "Raster")) 151s + (y = st_as_stars(r)) 151s + 151s + # single band: 151s + x = adrop(x[,,,1]) 151s + r = as(x, "Raster") 151s + (y = st_as_stars(r)) 151s + 151s + # proxy: 151s + (x = read_stars(tif, proxy = TRUE)) 151s + (r = as(x, "Raster")) 151s + (y = st_as_stars(r)) 151s + (y2 = st_as_stars(r, proxy = TRUE)) 151s + } 156s stars_proxy object with 1 attribute in 1 file(s): 156s $L7_ETMs.tif 156s [1] "[...]/L7_ETMs.tif" 156s 156s dimension(s): 156s from to offset delta refsys point x/y 156s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 156s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 156s band 1 6 NA NA NA NA 156s > 156s > if (require(terra, quietly = TRUE)) { 156s + ## terra ------------- 156s + stopifnot(require(terra)) 156s + (x = read_stars(tif)) 156s + (r = as(x, "SpatRaster")) 156s + (y = st_as_stars(r)) 156s + 156s + # single band: 156s + x = adrop(x[,,,1]) 156s + r = as(x, "SpatRaster") 156s + (y = st_as_stars(r)) 156s + 156s + # proxy: 156s + (x = read_stars(tif, proxy = TRUE)) 156s + (r = as(x, "SpatRaster")) 156s + (y = st_as_stars(r)) 156s + (y2 = st_as_stars(r, proxy = TRUE)) 156s + 156s + f = system.file("tif/lc.tif", package = "stars") 156s + lc = read_stars(system.file("tif/lc.tif", package = "stars")) 156s + levels(lc[[1]]) 156s + r = rast(lc) 156s + e = attr(lc[[1]], "exclude") 156s + 156s + if (packageVersion("terra") >= "1.5.48") { 156s + 156s + print(all.equal(terra::levels(r)[[1]][,2], terra::levels(rast(f))[[1]][!e,2])) 156s + print(all.equal(terra::coltab(r)[[1]][!e,], terra::coltab(rast(f))[[1]][!e,], check.attributes = FALSE)) 156s + 156s + r<- rast(nrow=10, ncol=10) 156s + set.seed(5) 156s + values(r)<- sample(1:3, size = ncell(r), replace = TRUE) 156s + levels(r) <- data.frame(ID=1:3, category = c("c1", "c2", "c3")) 156s + 156s + r2<- rast(nrow=10, ncol=10) 156s + set.seed(6) 156s + values(r2)<- sample(c(0,2,3), size = ncell(r2), replace = TRUE) 156s + levels(r2) <- data.frame(ID=c(0,2,3), category = c("x1", "x2", "x3")) 156s + 156s + r3<- c(r,r2) 156s + names(r3)<- c("lyr.1", "lyr.2") 156s + 156s + r3_stars<- st_as_stars(r3) 156s + 156s + st_redimension(r3_stars) |> print() 156s + rast(r3_stars) |> levels() |> print() 156s + 156s + m = matrix(1:121, 11, 11) 156s + bb = st_bbox(c(xmin=0, xmax=11, ymin=0, ymax=11)) 156s + s = st_as_stars(bb, values = m) 156s + r = rast(s) 156s + aggregate(r, 2) |> st_as_stars() -> r.s 156s + stopifnot(isTRUE(all.equal(r.s[,1:5,1:5], st_downsample(s, 1, FUN = mean)))) 156s + } 156s + } 157s [1] TRUE 157s [1] TRUE 157s stars object with 3 dimensions and 1 attribute 157s attribute(s): 157s lyr.1.lyr.2 157s c1:34 157s c2:32 157s c3:34 157s x1:28 157s x2:37 157s x3:35 157s dimension(s): 157s from to offset delta refsys values x/y 157s x 1 10 -180 36 WGS 84 (CRS84) NULL [x] 157s y 1 10 90 -18 WGS 84 (CRS84) NULL [y] 157s new_dim 1 2 NA NA NA lyr.1, lyr.2 157s [[1]] 157s IDs categories 157s 1 1 c1 157s 2 2 c2 157s 3 3 c3 157s 157s [[2]] 157s IDs categories 157s 1 0 x1 157s 2 2 x2 157s 3 3 x3 157s 157s > 157s > 157s BEGIN TEST rasterize.R 157s 157s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 157s Copyright (C) 2024 The R Foundation for Statistical Computing 157s Platform: x86_64-pc-linux-gnu 157s 157s R is free software and comes with ABSOLUTELY NO WARRANTY. 157s You are welcome to redistribute it under certain conditions. 157s Type 'license()' or 'licence()' for distribution details. 157s 157s R is a collaborative project with many contributors. 157s Type 'contributors()' for more information and 157s 'citation()' on how to cite R or R packages in publications. 157s 157s Type 'demo()' for some demos, 'help()' for on-line help, or 157s 'help.start()' for an HTML browser interface to help. 157s Type 'q()' to quit R. 157s 157s > suppressPackageStartupMessages(library(stars)) 158s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf")) 158s > (x = st_rasterize(nc)) # default grid: 159s stars object with 2 dimensions and 12 attributes 159s attribute(s): 159s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 159s AREA 0.042 0.108 0.142 1.451932e-01 0.181 0.241 30904 159s PERIMETER 0.999 1.461 1.716 1.786110e+00 2.004 3.640 30904 159s CNTY_ 1825.000 1907.000 1989.000 1.998403e+03 2085.000 2241.000 30904 159s CNTY_ID 1825.000 1907.000 1989.000 1.998403e+03 2085.000 2241.000 30904 159s FIPSNO 37001.000 37049.000 37101.000 3.710042e+04 37153.000 37199.000 30904 159s CRESS_ID 1.000 25.000 51.000 5.071206e+01 77.000 100.000 30904 159s BIR74 248.000 1323.000 2648.000 3.791637e+03 4139.000 21588.000 30904 159s SID74 0.000 3.000 5.000 7.891985e+00 10.000 44.000 30904 159s NWBIR74 1.000 297.000 844.000 1.246210e+03 1396.000 8027.000 30904 159s BIR79 319.000 1606.000 3108.000 4.852046e+03 5400.000 30757.000 30904 159s SID79 0.000 3.000 6.000 9.584098e+00 13.000 57.000 30904 159s NWBIR79 3.000 360.000 1058.000 1.604642e+03 1524.000 11631.000 30904 159s dimension(s): 159s from to offset delta refsys point x/y 159s x 1 461 -84.32 0.01925 NAD27 FALSE [x] 159s y 1 141 36.59 -0.01925 NAD27 FALSE [y] 159s > plot(x, axes = TRUE) 159s > # a bit more customized grid: 159s > (x = st_rasterize(nc, st_as_stars(st_bbox(nc), nx = 100, ny = 50, values = NA_real_))) 159s stars object with 2 dimensions and 12 attributes 159s attribute(s): 159s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 159s AREA 0.042 0.108 0.142 0.145536 0.181 0.241 2373 159s PERIMETER 0.999 1.470 1.716 1.789032 2.004 3.640 2373 159s CNTY_ 1825.000 1908.000 1989.000 1999.761325 2088.000 2241.000 2373 159s CNTY_ID 1825.000 1908.000 1989.000 1999.761325 2088.000 2241.000 2373 159s FIPSNO 37001.000 37049.000 37101.000 37100.327750 37151.000 37199.000 2373 159s CRESS_ID 1.000 25.000 51.000 50.663875 76.000 100.000 2373 159s BIR74 248.000 1323.500 2648.000 3790.530263 4139.000 21588.000 2373 159s SID74 0.000 3.000 5.000 7.905976 10.000 44.000 2373 159s NWBIR74 1.000 289.000 844.000 1246.116483 1396.000 8027.000 2373 159s BIR79 319.000 1606.000 3108.000 4848.231062 5386.000 30757.000 2373 159s SID79 0.000 3.000 6.000 9.574419 13.000 57.000 2373 159s NWBIR79 3.000 360.000 1058.000 1602.740769 1524.000 11631.000 2373 159s dimension(s): 159s from to offset delta refsys point x/y 159s x 1 100 -84.32 0.08867 NAD27 FALSE [x] 159s y 1 50 36.59 -0.05415 NAD27 FALSE [y] 159s > plot(x, axes = TRUE) 159s > (ls = st_sf(a = 1:2, st_sfc(st_linestring(rbind(c(0.1, 0), c(1.1, 1))), st_linestring(rbind(c(0, 0.05), c(1, 0.05)))))) 159s Simple feature collection with 2 features and 1 field 159s Geometry type: LINESTRING 159s Dimension: XY 159s Bounding box: xmin: 0 ymin: 0 xmax: 1.1 ymax: 1 159s CRS: NA 159s a 159s 1 1 159s 2 2 159s c..st_sfc.st_linestring.rbind.c.0.1..0...c.1.1..1.....st_linestring.rbind.c.0..........0.05...c.1..0.05...... 159s 1 LINESTRING (0.1 0, 1.1 1) 159s 2 LINESTRING (0 0.05, 1 0.05) 159s > (grd = st_as_stars(st_bbox(ls), nx = 10, ny = 10, xlim = c(0, 1.0), ylim = c(0, 1), values = NA_real_)) 159s stars object with 2 dimensions and 1 attribute 159s attribute(s): 159s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 159s values NA NA NA NaN NA NA 100 159s dimension(s): 159s from to offset delta x/y 159s x 1 10 0 0.1 [x] 159s y 1 10 1 -0.1 [y] 159s > # the following two plots confirm that (only) the 159s > # upper-left corner is part of the grid cell (when dy is negative), leading 159s > # to a seemingly half-gridcell-shift problem: 159s > ## sf_extSoftVersion()["GDAL"] 159s > plot(st_rasterize(ls, grd), axes = TRUE, reset = FALSE) # ALL_TOUCHED=FALSE; 159s > plot(ls, add = TRUE, col = "red") 159s > plot(st_rasterize(ls, grd, options = "ALL_TOUCHED=TRUE"), axes = TRUE, reset = FALSE) 159s > plot(ls, add = TRUE, col = "red") 159s > # add lines to existing 0 values, summing values in case of multiple lines: 159s > (grd = st_as_stars(st_bbox(ls), nx = 10, ny = 10, xlim = c(0, 1.0), ylim = c(0, 1), values = 0)) 159s stars object with 2 dimensions and 1 attribute 159s attribute(s): 159s Min. 1st Qu. Median Mean 3rd Qu. Max. 159s values 0 0 0 0 0 0 159s dimension(s): 159s from to offset delta x/y 159s x 1 10 0 0.1 [x] 159s y 1 10 1 -0.1 [y] 159s > r = st_rasterize(ls, grd, options = c("MERGE_ALG=ADD", "ALL_TOUCHED=TRUE")) 159s > plot(r, axes = TRUE, reset = FALSE) 159s > plot(ls, add = TRUE, col = "red") 159s > 159s BEGIN TEST rectilinear.R 159s 159s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 159s Copyright (C) 2024 The R Foundation for Statistical Computing 159s Platform: x86_64-pc-linux-gnu 159s 159s R is free software and comes with ABSOLUTELY NO WARRANTY. 159s You are welcome to redistribute it under certain conditions. 159s Type 'license()' or 'licence()' for distribution details. 159s 159s R is a collaborative project with many contributors. 159s Type 'contributors()' for more information and 159s 'citation()' on how to cite R or R packages in publications. 159s 159s Type 'demo()' for some demos, 'help()' for on-line help, or 159s 'help.start()' for an HTML browser interface to help. 159s Type 'q()' to quit R. 159s 159s > suppressPackageStartupMessages(library(stars)) 160s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 160s > x = read_stars(tif) 160s > (xx = x[,c(1:347,349),c(1:350,352),]) # rectilinear: one-but-last row & col missing 160s stars object with 3 dimensions and 1 attribute 160s attribute(s): 160s Min. 1st Qu. Median Mean 3rd Qu. Max. 160s L7_ETMs.tif 1 54 69 68.9915 86 255 160s dimension(s): 160s from to refsys point 160s x 1 348 SIRGAS 2000 / UTM zone 25S FALSE 160s y 1 351 SIRGAS 2000 / UTM zone 25S FALSE 160s band 1 6 NA NA 160s values x/y 160s x [288790.5,288819),...,[298708.5,298737) [x] 160s y [9120747,9120718),...,[9110743,9110715) [y] 160s band NULL 160s > image(xx) # chooses useRaster itself 160s > # see also tidy.R for a ggplot example, leaving out the row. 160s > 160s > m = matrix(1:16, 4, 4) 160s > x = 1:4 160s > y = 2:5 160s > (st = st_as_stars(list(m = m), dimensions = st_dimensions(x = x, y = y))) 160s stars object with 2 dimensions and 1 attribute 160s attribute(s): 160s Min. 1st Qu. Median Mean 3rd Qu. Max. 160s m 1 4.75 8.5 8.5 12.25 16 160s dimension(s): 160s from to offset delta point x/y 160s x 1 4 1 1 FALSE [x] 160s y 1 4 2 1 FALSE [y] 160s > st = st_set_dimensions(st, 1, values = c(1,2,3,4,6)) 160s > st = st_set_dimensions(st, 2, values = c(2,3,4,5,8)) 160s > try(st_set_dimensions(st, 2, values = c(2,3,4,5,8,20))) # one too many 160s > 160s > # $<-.stars: 160s > st$foo = st$m * 2 160s Error in st_set_dimensions(st, 2, values = c(2, 3, 4, 5, 8, 20)) : 160s length of values ( 6 ) does not match length of dimension 2 ( 4 ) 160s > st 160s stars object with 2 dimensions and 2 attributes 160s attribute(s): 160s Min. 1st Qu. Median Mean 3rd Qu. Max. 160s m 1 4.75 8.5 8.5 12.25 16 160s foo 2 9.50 17.0 17.0 24.50 32 160s dimension(s): 160s from to point values x/y 160s x 1 4 FALSE [1,2),...,[4,6) [x] 160s y 1 4 FALSE [2,3),...,[5,8) [y] 160s > 160s > # st_as_sf: 160s > 160s > if (utils::packageVersion("sf") > "0.7.2") { 160s + plot(st_as_sf(st, as_points = FALSE), axes = TRUE) 160s + } 160s > 160s > image(st, text_values = TRUE, axes = TRUE) 160s > 160s BEGIN TEST redimension.R 161s 161s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 161s Copyright (C) 2024 The R Foundation for Statistical Computing 161s Platform: x86_64-pc-linux-gnu 161s 161s R is free software and comes with ABSOLUTELY NO WARRANTY. 161s You are welcome to redistribute it under certain conditions. 161s Type 'license()' or 'licence()' for distribution details. 161s 161s R is a collaborative project with many contributors. 161s Type 'contributors()' for more information and 161s 'citation()' on how to cite R or R packages in publications. 161s 161s Type 'demo()' for some demos, 'help()' for on-line help, or 161s 'help.start()' for an HTML browser interface to help. 161s Type 'q()' to quit R. 161s 161s > suppressPackageStartupMessages(library(stars)) 161s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 161s > r = read_stars(list(a = c(tif,tif), b = c(tif, tif)), proxy = TRUE) 161s > (xx = st_redimension(r, along = list(foo = 1:4))) 161s stars_proxy object with 1 attribute in 4 file(s): 161s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 161s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 161s [4] "[...]/L7_ETMs.tif" 161s 161s dimension(s): 161s from to offset delta refsys point x/y 161s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 161s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 161s band 1 6 NA NA NA NA 161s foo 1 4 1 1 NA NA 161s > (rr = c(xx, xx)) 161s stars_proxy object with 2 attributes in 8 file(s): 161s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 161s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 161s [4] "[...]/L7_ETMs.tif" 161s 161s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 161s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 161s [4] "[...]/L7_ETMs.tif" 161s 161s dimension(s): 161s from to offset delta refsys point x/y 161s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 161s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 161s band 1 6 NA NA NA NA 161s foo 1 4 1 1 NA NA 161s > # st_as_stars(rr) 161s > (rrr = st_redimension(rr, along = list(bar = as.Date(c("2001-01-01", "2002-01-01"))))) 161s stars_proxy object with 1 attribute in 8 file(s): 161s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif.a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 161s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 161s [4] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 161s [7] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 161s 161s dimension(s): 161s from to offset delta refsys point x/y 161s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 161s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 161s band 1 6 NA NA NA NA 161s foo 1 4 1 1 NA NA 161s bar 1 2 2001-01-01 365 days Date NA 161s > (rr = c(a = xx, b = xx)) 161s stars_proxy object with 2 attributes in 8 file(s): 161s $a 161s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 161s [4] "[...]/L7_ETMs.tif" 161s 161s $b 161s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 161s [4] "[...]/L7_ETMs.tif" 161s 161s dimension(s): 161s from to offset delta refsys point x/y 161s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 161s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 161s band 1 6 NA NA NA NA 161s foo 1 4 1 1 NA NA 161s > # st_as_stars(rr) 161s > (rrr = st_redimension(rr, along = list(bar = as.Date(c("2001-01-01", "2002-01-01"))))) 161s stars_proxy object with 1 attribute in 8 file(s): 161s $a.b 161s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 161s [4] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 161s [7] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 161s 161s dimension(s): 161s from to offset delta refsys point x/y 161s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 161s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 161s band 1 6 NA NA NA NA 161s foo 1 4 1 1 NA NA 161s bar 1 2 2001-01-01 365 days Date NA 161s > 161s BEGIN TEST sf.R 162s 162s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 162s Copyright (C) 2024 The R Foundation for Statistical Computing 162s Platform: x86_64-pc-linux-gnu 162s 162s R is free software and comes with ABSOLUTELY NO WARRANTY. 162s You are welcome to redistribute it under certain conditions. 162s Type 'license()' or 'licence()' for distribution details. 162s 162s R is a collaborative project with many contributors. 162s Type 'contributors()' for more information and 162s 'citation()' on how to cite R or R packages in publications. 162s 162s Type 'demo()' for some demos, 'help()' for on-line help, or 162s 'help.start()' for an HTML browser interface to help. 162s Type 'q()' to quit R. 162s 162s > suppressPackageStartupMessages(library(stars)) 162s > library(sf) 162s > #jp2 = system.file("jp2/B01.jp2", package = "stars") 162s > #(x = read_stars(jp2, options = c("OVERVIEW_LEVEL=3"))) 162s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 162s > #(x = read_stars(tif, options = c("OVERVIEW_LEVEL=3"))) # FIXME: breaks on windows 162s > (x = read_stars(tif)[,1:20,1:20]) 162s stars object with 3 dimensions and 1 attribute 162s attribute(s): 162s Min. 1st Qu. Median Mean 3rd Qu. Max. 162s L7_ETMs.tif 17 44 58 58.19667 70 130 162s dimension(s): 162s from to offset delta refsys point x/y 162s x 1 20 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 162s y 1 20 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 162s band 1 6 NA NA NA NA 162s > # names(x) = "L7_ETM" 162s > 162s > # library(abind) 162s > # x = adrop(x) 162s > image(x) 162s > (sfc = st_as_sfc(x, as_points = FALSE)) 162s Geometry set for 400 features 162s Geometry type: POLYGON 162s Dimension: XY 162s Bounding box: xmin: 288776.3 ymin: 9120191 xmax: 289346.3 ymax: 9120761 162s Projected CRS: SIRGAS 2000 / UTM zone 25S 162s First 5 geometries: 162s > plot(sfc, add =TRUE) 162s POLYGON ((288776.3 9120761, 288804.8 9120761, 2... 162s POLYGON ((288804.8 9120761, 288833.3 9120761, 2... 162s POLYGON ((288833.3 9120761, 288861.8 9120761, 2... 162s POLYGON ((288861.8 9120761, 288890.3 9120761, 2... 162s POLYGON ((288890.3 9120761, 288918.8 9120761, 2... 162s > (sfc = st_as_sfc(x, as_points = TRUE)) 162s Geometry set for 400 features 162s Geometry type: POINT 162s Dimension: XY 162s Bounding box: xmin: 288790.5 ymin: 9120205 xmax: 289332 ymax: 9120747 162s Projected CRS: SIRGAS 2000 / UTM zone 25S 162s First 5 geometries: 162s POINT (288790.5 9120747) 162s POINT (288819 9120747) 162s POINT (288847.5 9120747) 162s > plot(sfc, add = TRUE) 162s POINT (288876 9120747) 162s POINT (288904.5 9120747) 162s > 162s > sf = st_as_sf(x, as_points = FALSE) 162s > plot(sf, border = NA) 163s > sf = st_as_sf(x[,,,1], as_points = FALSE, merge = TRUE) 163s > plot(sf, border = NA) 163s > 163s > sfc1 <- st_as_sfc(x, as_points = TRUE, use_cpp = TRUE, na.rm = FALSE) 163s > sfc2 <- st_as_sfc(x, as_points = TRUE, use_cpp = FALSE) 163s > identical(sfc1, sfc2) 163s [1] TRUE 163s > 163s > sfc1 <- st_as_sfc(x, as_points = FALSE, use_cpp = TRUE, na.rm = FALSE) 163s > sfc2 <- st_as_sfc(x, as_points = FALSE, use_cpp = FALSE) 163s > identical(sfc1, sfc2) 163s [1] TRUE 163s > 163s > # sf -> stars -> sf 163s > x = st_sfc(st_point(0:1), st_point(1:2), st_point(2:3)) 163s > m = matrix(1:9,3) 163s > colnames(m) = c("a", "b", "c") 163s > foo = st_sf(m, geom = x) 163s > x = st_as_stars(foo) 163s > c(x) 163s stars object with 1 dimensions and 3 attributes 163s attribute(s): 163s Min. 1st Qu. Median Mean 3rd Qu. Max. 163s a 1 1.5 2 2 2.5 3 163s b 4 4.5 5 5 5.5 6 163s c 7 7.5 8 8 8.5 9 163s dimension(s): 163s from to point values 163s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 163s > st_redimension(x) 163s stars object with 2 dimensions and 1 attribute 163s attribute(s): 163s Min. 1st Qu. Median Mean 3rd Qu. Max. 163s a.b.c 1 3 5 5 7 9 163s dimension(s): 163s from to point values 163s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 163s new_dim 1 3 NA a, b, c 163s > c(x, x) 163s stars object with 1 dimensions and 6 attributes 163s attribute(s): 163s Min. 1st Qu. Median Mean 3rd Qu. Max. 163s a 1 1.5 2 2 2.5 3 163s b 4 4.5 5 5 5.5 6 163s c 7 7.5 8 8 8.5 9 163s a.1 1 1.5 2 2 2.5 3 163s b.1 4 4.5 5 5 5.5 6 163s c.1 7 7.5 8 8 8.5 9 163s dimension(s): 163s from to point values 163s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 163s > (y = st_redimension(x, along = list(time = as.Date("2017-11-27") + 0:2))) 163s stars object with 2 dimensions and 1 attribute 163s attribute(s): 163s Min. 1st Qu. Median Mean 3rd Qu. Max. 163s a.b.c 1 3 5 5 7 9 163s dimension(s): 163s from to offset delta refsys point values 163s geom 1 3 NA NA NA TRUE POINT (0 1),...,POINT (2 3) 163s time 1 3 2017-11-27 1 days Date NA NULL 163s > st_as_sf(y) 163s Simple feature collection with 3 features and 3 fields 163s Geometry type: POINT 163s Dimension: XY 163s Bounding box: xmin: 0 ymin: 1 xmax: 2 ymax: 3 163s CRS: NA 163s 2017-11-27 2017-11-28 2017-11-29 geom 163s 1 1 4 7 POINT (0 1) 163s 2 2 5 8 POINT (1 2) 163s 3 3 6 9 POINT (2 3) 163s > st_as_sf(st_as_stars(foo)) 163s Simple feature collection with 3 features and 3 fields 163s Geometry type: POINT 163s Dimension: XY 163s Bounding box: xmin: 0 ymin: 1 xmax: 2 ymax: 3 163s CRS: NA 163s a b c geom 163s 1 1 4 7 POINT (0 1) 163s 2 2 5 8 POINT (1 2) 163s 3 3 6 9 POINT (2 3) 163s > 163s > c(x,x,along=1) # NEEDS FIXING! 163s stars object with 1 dimensions and 3 attributes 163s attribute(s): 163s Min. 1st Qu. Median Mean 3rd Qu. Max. 163s a 1 1.25 2 2 2.75 3 163s b 4 4.25 5 5 5.75 6 163s c 7 7.25 8 8 8.75 9 163s dimension(s): 163s from to point values 163s geom 1 6 TRUE POINT (0 1),...,POINT (2 3) 163s > # st_as_stars.sfc 163s > st_as_stars(st_geometry(st_as_sf(y)), nx = 10, ny = 10, as_points = FALSE) 163s stars object with 2 dimensions and 1 attribute 163s attribute(s): 163s Min. 1st Qu. Median Mean 3rd Qu. Max. 163s values 0 0 0 0.06 0 1 163s dimension(s): 163s from to offset delta x/y 163s x 1 10 0 0.2 [x] 163s y 1 10 3 -0.2 [y] 163s > 163s BEGIN TEST sp.R 163s 163s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 163s Copyright (C) 2024 The R Foundation for Statistical Computing 163s Platform: x86_64-pc-linux-gnu 163s 163s R is free software and comes with ABSOLUTELY NO WARRANTY. 163s You are welcome to redistribute it under certain conditions. 163s Type 'license()' or 'licence()' for distribution details. 163s 163s R is a collaborative project with many contributors. 163s Type 'contributors()' for more information and 163s 'citation()' on how to cite R or R packages in publications. 163s 163s Type 'demo()' for some demos, 'help()' for on-line help, or 163s 'help.start()' for an HTML browser interface to help. 163s Type 'q()' to quit R. 163s 163s > options(rgdal_show_exportToProj4_warnings = "none") 163s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) { 163s + demo(meuse) 163s + # remove +init=xxx 163s + meuse@proj4string = CRS( 163s + "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs" 163s + ) 163s + meuse.grid@proj4string = CRS( 163s + "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs" 163s + ) 163s + 163s + suppressPackageStartupMessages(library(stars)) 163s + (m = st_as_stars(meuse)) 163s + (gr = st_as_stars(meuse.grid)) 163s + 163s + m2 = as(m, "Spatial") 163s + summary(m2) 163s + gr2 = as(gr, "Spatial") 163s + summary(gr2) 163s + 163s + all.equal(meuse, m2, check.attributes = FALSE) 163s + fullgrid(meuse.grid) = TRUE 163s + all.equal(meuse.grid, gr2, check.attributes = FALSE) 163s + 163s + #all.equal(meuse, m2) 163s + #all.equal(meuse.grid, gr2) 163s + } 163s 163s 163s demo(meuse) 163s ---- ~~~~~ 163s 163s > require(sp) 163s 163s > crs = CRS("EPSG:28992") 164s 164s > data("meuse") 164s 164s > coordinates(meuse) <- ~x+y 164s 164s > proj4string(meuse) <- crs 164s 164s > data("meuse.grid") 164s 164s > coordinates(meuse.grid) <- ~x+y 164s 164s > gridded(meuse.grid) <- TRUE 164s 164s > proj4string(meuse.grid) <- crs 164s 164s > data("meuse.riv") 164s 164s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 164s 164s > proj4string(meuse.riv) <- crs 164s 164s > data("meuse.area") 164s 164s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 164s 164s > proj4string(meuse.area) <- crs 164s [1] TRUE 164s > 164s BEGIN TEST spacetime.R 164s 164s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 164s Copyright (C) 2024 The R Foundation for Statistical Computing 164s Platform: x86_64-pc-linux-gnu 164s 164s R is free software and comes with ABSOLUTELY NO WARRANTY. 164s You are welcome to redistribute it under certain conditions. 164s Type 'license()' or 'licence()' for distribution details. 164s 164s R is a collaborative project with many contributors. 164s Type 'contributors()' for more information and 164s 'citation()' on how to cite R or R packages in publications. 164s 164s Type 'demo()' for some demos, 'help()' for on-line help, or 164s 'help.start()' for an HTML browser interface to help. 164s Type 'q()' to quit R. 164s 164s > suppressPackageStartupMessages(library(stars)) 165s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 165s + set.seed(1331) 165s + Sys.setenv(TZ="UTC") 165s + example(STFDF) 165s + 165s + x = st_as_stars(stfdf) 165s + xx = as(x, "STFDF") 165s + 165s + # as.xts.stars: 165s + library(xts) 165s + xts = as.xts(x) 165s + st_as_stars(xts) 165s + st_as_stars(xts, dimensions = st_dimensions(x)) 165s + 165s + library(sp) 165s + pts = SpatialPoints(rbind(c(0,0), c(0,1), c(1,0), c(1,1))) 165s + gridded(pts) = TRUE 165s + 165s + tm = xts(1:10, as.Date("2010-01-01")+0:9) 165s + stfdf = STFDF(pts, tm, data.frame(foo = seq_len(length(pts) * length(tm)))) 165s + x = st_as_stars(stfdf) 165s + xx = as(x, "STFDF") 165s + 165s + x = st_as_stars(as(stfdf, "STSDF")) 165s + } 165s 165s STFDF> sp = cbind(x = c(0,0,1), y = c(0,1,1)) 165s 165s STFDF> row.names(sp) = paste("point", 1:nrow(sp), sep="") 165s 165s STFDF> library(sp) 165s 165s STFDF> sp = SpatialPoints(sp) 165s 165s STFDF> time = as.POSIXct("2010-08-05")+3600*(10:13) 165s 165s STFDF> m = c(10,20,30) # means for each of the 3 point locations 165s 165s STFDF> mydata = rnorm(length(sp)*length(time),mean=rep(m, 4)) 165s 165s STFDF> IDs = paste("ID",1:length(mydata)) 165s 165s STFDF> mydata = data.frame(values = signif(mydata,3), ID=IDs) 165s 165s STFDF> stfdf = STFDF(sp, time, mydata) 165s 165s STFDF> stfdf 165s An object of class "STFDF" 165s Slot "data": 165s values ID 165s 1 9.38 ID 1 165s 2 21.10 ID 2 165s 3 29.80 ID 3 165s 4 11.50 ID 4 165s 5 19.80 ID 5 165s 6 31.20 ID 6 165s 7 10.40 ID 7 165s 8 20.50 ID 8 165s 9 29.80 ID 9 165s 10 10.30 ID 10 165s 11 21.40 ID 11 165s 12 29.40 ID 12 165s 165s Slot "sp": 165s SpatialPoints: 165s x y 165s point1 0 0 165s point2 0 1 165s point3 1 1 165s Coordinate Reference System (CRS) arguments: NA 165s 165s Slot "time": 165s timeIndex 165s 2010-08-05 10:00:00 1 165s 2010-08-05 11:00:00 2 165s 2010-08-05 12:00:00 3 165s 2010-08-05 13:00:00 4 165s 165s Slot "endTime": 165s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 165s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 165s 165s 165s STFDF> stfdf[1:2,] 165s An object of class "STFDF" 165s Slot "data": 165s values ID 165s 1 9.38 ID 1 165s 2 21.10 ID 2 165s 3 11.50 ID 4 165s 4 19.80 ID 5 165s 5 10.40 ID 7 165s 6 20.50 ID 8 165s 7 10.30 ID 10 165s 8 21.40 ID 11 165s 165s Slot "sp": 165s SpatialPoints: 165s x y 165s point1 0 0 165s point2 0 1 165s Coordinate Reference System (CRS) arguments: NA 165s 165s Slot "time": 165s timeIndex 165s 2010-08-05 10:00:00 1 165s 2010-08-05 11:00:00 2 165s 2010-08-05 12:00:00 3 165s 2010-08-05 13:00:00 4 165s 165s Slot "endTime": 165s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 165s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 165s 165s 165s STFDF> stfdf[,1:2] 165s An object of class "STFDF" 165s Slot "data": 165s values ID 165s 1 9.38 ID 1 165s 2 21.10 ID 2 165s 3 29.80 ID 3 165s 4 11.50 ID 4 165s 5 19.80 ID 5 165s 6 31.20 ID 6 165s 165s Slot "sp": 165s SpatialPoints: 165s x y 165s point1 0 0 165s point2 0 1 165s point3 1 1 165s Coordinate Reference System (CRS) arguments: NA 165s 165s Slot "time": 165s timeIndex 165s 2010-08-05 10:00:00 1 165s 2010-08-05 11:00:00 2 165s 165s Slot "endTime": 165s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 165s 165s 165s STFDF> stfdf[,,2] 165s An object of class "STFDF" 165s Slot "data": 165s ID 165s 1 ID 1 165s 2 ID 2 165s 3 ID 3 165s 4 ID 4 165s 5 ID 5 165s 6 ID 6 165s 7 ID 7 165s 8 ID 8 165s 9 ID 9 165s 10 ID 10 165s 11 ID 11 165s 12 ID 12 165s 165s Slot "sp": 165s SpatialPoints: 165s x y 165s point1 0 0 165s point2 0 1 165s point3 1 1 165s Coordinate Reference System (CRS) arguments: NA 165s 165s Slot "time": 165s timeIndex 165s 2010-08-05 10:00:00 1 165s 2010-08-05 11:00:00 2 165s 2010-08-05 12:00:00 3 165s 2010-08-05 13:00:00 4 165s 165s Slot "endTime": 165s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 165s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 165s 165s 165s STFDF> stfdf[,,"values"] 165s An object of class "STFDF" 165s Slot "data": 165s values 165s 1 9.38 165s 2 21.10 165s 3 29.80 165s 4 11.50 165s 5 19.80 165s 6 31.20 165s 7 10.40 165s 8 20.50 165s 9 29.80 165s 10 10.30 165s 11 21.40 165s 12 29.40 165s 165s Slot "sp": 165s SpatialPoints: 165s x y 165s point1 0 0 165s point2 0 1 165s point3 1 1 165s Coordinate Reference System (CRS) arguments: NA 165s 165s Slot "time": 165s timeIndex 165s 2010-08-05 10:00:00 1 165s 2010-08-05 11:00:00 2 165s 2010-08-05 12:00:00 3 165s 2010-08-05 13:00:00 4 165s 165s Slot "endTime": 165s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 165s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 165s 165s 165s STFDF> stfdf[1,] 165s values ID timeIndex 165s 2010-08-05 10:00:00 9.38 ID 1 1 165s 2010-08-05 11:00:00 11.50 ID 4 2 165s 2010-08-05 12:00:00 10.40 ID 7 3 165s 2010-08-05 13:00:00 10.30 ID 10 4 165s 165s STFDF> stfdf[,2] 165s coordinates values ID 165s 1 (0, 0) 11.5 ID 4 165s 2 (0, 1) 19.8 ID 5 165s 3 (1, 1) 31.2 ID 6 165s 165s STFDF> as(stfdf[,,1], "xts") 165s point1 point2 point3 165s 2010-08-05 10:00:00 9.38 21.1 29.8 165s 2010-08-05 11:00:00 11.50 19.8 31.2 165s 2010-08-05 12:00:00 10.40 20.5 29.8 165s 2010-08-05 13:00:00 10.30 21.4 29.4 165s 165s STFDF> as(stfdf[,,2], "xts") 165s point1 point2 point3 165s 2010-08-05 10:00:00 ID 1 ID 2 ID 3 165s 2010-08-05 11:00:00 ID 4 ID 5 ID 6 165s 2010-08-05 12:00:00 ID 7 ID 8 ID 9 165s 2010-08-05 13:00:00 ID 10 ID 11 ID 12 165s 165s STFDF> # examples for [[, [[<-, $ and $<- 165s STFDF> stfdf[[1]] 165s [1] 9.38 21.10 29.80 11.50 19.80 31.20 10.40 20.50 29.80 10.30 21.40 29.40 165s 165s STFDF> stfdf[["values"]] 165s [1] 9.38 21.10 29.80 11.50 19.80 31.20 10.40 20.50 29.80 10.30 21.40 29.40 165s 165s STFDF> stfdf[["newVal"]] <- rnorm(12) 165s 165s STFDF> stfdf$ID 165s [1] "ID 1" "ID 2" "ID 3" "ID 4" "ID 5" "ID 6" "ID 7" "ID 8" "ID 9" 165s [10] "ID 10" "ID 11" "ID 12" 165s 165s STFDF> stfdf$ID = paste("OldIDs", 1:12, sep="") 165s 165s STFDF> stfdf$NewID = paste("NewIDs", 12:1, sep="") 165s 165s STFDF> stfdf 165s An object of class "STFDF" 165s Slot "data": 165s values ID newVal NewID 165s 1 9.38 OldIDs1 -0.3125824 NewIDs12 165s 2 21.10 OldIDs2 -1.0536246 NewIDs11 165s 3 29.80 OldIDs3 -0.7188880 NewIDs10 165s 4 11.50 OldIDs4 -1.0525404 NewIDs9 165s 5 19.80 OldIDs5 -0.8441413 NewIDs8 165s 6 31.20 OldIDs6 1.1420848 NewIDs7 165s 7 10.40 OldIDs7 1.9479070 NewIDs6 165s 8 20.50 OldIDs8 -0.4512836 NewIDs5 165s 9 29.80 OldIDs9 0.6695716 NewIDs4 165s 10 10.30 OldIDs10 0.1269003 NewIDs3 165s 11 21.40 OldIDs11 -0.7273297 NewIDs2 165s 12 29.40 OldIDs12 -0.8151803 NewIDs1 165s 165s Slot "sp": 165s SpatialPoints: 165s x y 165s point1 0 0 165s point2 0 1 165s point3 1 1 165s Coordinate Reference System (CRS) arguments: NA 165s 165s Slot "time": 165s timeIndex 165s 2010-08-05 10:00:00 1 165s 2010-08-05 11:00:00 2 165s 2010-08-05 12:00:00 3 165s 2010-08-05 13:00:00 4 165s 165s Slot "endTime": 165s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 165s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 165s 165s 165s STFDF> x = stfdf[stfdf[1:2,],] 165s 165s STFDF> all.equal(x, stfdf[1:2,]) 165s [1] TRUE 165s 165s STFDF> all.equal(stfdf, stfdf[stfdf,]) # converts character to factor... 165s [1] TRUE 166s Loading required package: zoo 166s 166s Attaching package: 'zoo' 166s 166s The following objects are masked from 'package:base': 166s 166s as.Date, as.Date.numeric 166s 166s only the first attribute will used; maybe use merge() first? 166s > 166s BEGIN TEST spatstat.R 166s 166s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 166s Copyright (C) 2024 The R Foundation for Statistical Computing 166s Platform: x86_64-pc-linux-gnu 166s 166s R is free software and comes with ABSOLUTELY NO WARRANTY. 166s You are welcome to redistribute it under certain conditions. 166s Type 'license()' or 'licence()' for distribution details. 166s 166s R is a collaborative project with many contributors. 166s Type 'contributors()' for more information and 166s 'citation()' on how to cite R or R packages in publications. 166s 166s Type 'demo()' for some demos, 'help()' for on-line help, or 166s 'help.start()' for an HTML browser interface to help. 166s Type 'q()' to quit R. 166s 166s > suppressPackageStartupMessages(library(sf)) 166s > 166s > library(stars) 166s Loading required package: abind 167s > if (suppressPackageStartupMessages(require(spatstat.geom, quietly = TRUE))) { 167s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 167s + s = adrop(read_stars(tif)[,,,1]) > 70 167s + plot(s) 167s + m = as.owin(s) 167s + plot(m) 167s + print(table(m$m)) 167s + } 168s 168s FALSE TRUE 168s 39494 83354 168s > 168s BEGIN TEST stars.R 168s 168s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 168s Copyright (C) 2024 The R Foundation for Statistical Computing 168s Platform: x86_64-pc-linux-gnu 168s 168s R is free software and comes with ABSOLUTELY NO WARRANTY. 168s You are welcome to redistribute it under certain conditions. 168s Type 'license()' or 'licence()' for distribution details. 168s 168s R is a collaborative project with many contributors. 168s Type 'contributors()' for more information and 168s 'citation()' on how to cite R or R packages in publications. 168s 168s Type 'demo()' for some demos, 'help()' for on-line help, or 168s 'help.start()' for an HTML browser interface to help. 168s Type 'q()' to quit R. 168s 168s > Sys.setenv(TZ="UTC") 168s > suppressPackageStartupMessages(library(stars)) 169s > set.seed(13521) # runif 169s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 169s > (x_ = read_stars(c(tif,tif))) # FIXME: not what you'd expect 169s stars object with 3 dimensions and 2 attributes 169s attribute(s): 169s Min. 1st Qu. Median Mean 3rd Qu. Max. 169s L7_ETMs.tif 1 54 69 68.91242 86 255 169s L7_ETMs.tif.1 1 54 69 68.91242 86 255 169s dimension(s): 169s from to offset delta refsys point x/y 169s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 169s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 169s band 1 6 NA NA NA NA 169s > (x = read_stars(tif)) 169s stars object with 3 dimensions and 1 attribute 169s attribute(s): 169s Min. 1st Qu. Median Mean 3rd Qu. Max. 169s L7_ETMs.tif 1 54 69 68.91242 86 255 169s dimension(s): 169s from to offset delta refsys point x/y 169s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 169s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 169s band 1 6 NA NA NA NA 169s > # image(x) 169s > gdal_crs(tif) 169s Coordinate Reference System: 169s User input: PROJCS["SIRGAS 2000 / UTM zone 25S",GEOGCS["SIRGAS 2000",DATUM["Sistema_de_Referencia_Geocentrico_para_las_AmericaS_2000",SPHEROID["GRS 1980",6378137,298.257222101,AUTHORITY["EPSG","7019"]],AUTHORITY["EPSG","6674"]],PRIMEM["Greenwich",0,AUTHORITY["EPSG","8901"]],UNIT["degree",0.0174532925199433,AUTHORITY["EPSG","9122"]],AUTHORITY["EPSG","4674"]],PROJECTION["Transverse_Mercator"],PARAMETER["latitude_of_origin",0],PARAMETER["central_meridian",-33],PARAMETER["scale_factor",0.9996],PARAMETER["false_easting",500000],PARAMETER["false_northing",10000000],UNIT["metre",1,AUTHORITY["EPSG","9001"]],AXIS["Easting",EAST],AXIS["Northing",NORTH],AUTHORITY["EPSG","31985"]] 169s wkt: 169s PROJCRS["SIRGAS 2000 / UTM zone 25S", 169s BASEGEOGCRS["SIRGAS 2000", 169s DATUM["Sistema de Referencia Geocentrico para las AmericaS 2000", 169s ELLIPSOID["GRS 1980",6378137,298.257222101, 169s LENGTHUNIT["metre",1]]], 169s PRIMEM["Greenwich",0, 169s ANGLEUNIT["degree",0.0174532925199433]], 169s ID["EPSG",4674]], 169s CONVERSION["UTM zone 25S", 169s METHOD["Transverse Mercator", 169s ID["EPSG",9807]], 169s PARAMETER["Latitude of natural origin",0, 169s ANGLEUNIT["degree",0.0174532925199433], 169s ID["EPSG",8801]], 169s PARAMETER["Longitude of natural origin",-33, 169s ANGLEUNIT["degree",0.0174532925199433], 169s ID["EPSG",8802]], 169s PARAMETER["Scale factor at natural origin",0.9996, 169s SCALEUNIT["unity",1], 169s ID["EPSG",8805]], 169s PARAMETER["False easting",500000, 169s LENGTHUNIT["metre",1], 169s ID["EPSG",8806]], 169s PARAMETER["False northing",10000000, 169s LENGTHUNIT["metre",1], 169s ID["EPSG",8807]]], 169s CS[Cartesian,2], 169s AXIS["easting",east, 169s ORDER[1], 169s LENGTHUNIT["metre",1]], 169s AXIS["northing",north, 169s ORDER[2], 169s LENGTHUNIT["metre",1]], 169s ID["EPSG",31985]] 169s > plot(x) 170s > plot(x, join_zlim = FALSE) 170s > x %>% st_set_dimensions(names = c('a', 'b', 'c')) 170s stars object with 3 dimensions and 1 attribute 170s attribute(s): 170s Min. 1st Qu. Median Mean 3rd Qu. Max. 170s L7_ETMs.tif 1 54 69 68.91242 86 255 170s dimension(s): 170s from to offset delta refsys point x/y 170s a 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 170s b 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 170s c 1 6 NA NA NA NA 170s > st_get_dimension_values(x, 3) 170s [1] 1 2 3 4 5 6 170s > 170s > (x1 = st_set_dimensions(x, "band", values = c(1,2,3,4,5,7), names = "band_number", point = TRUE)) 170s stars object with 3 dimensions and 1 attribute 170s attribute(s): 170s Min. 1st Qu. Median Mean 3rd Qu. Max. 170s L7_ETMs.tif 1 54 69 68.91242 86 255 170s dimension(s): 170s from to offset delta refsys point values x/y 170s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 170s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 170s band_number 1 6 NA NA NA TRUE 1,...,7 170s > rbind(c(0.45,0.515), c(0.525,0.605), c(0.63,0.69), c(0.775,0.90), c(1.55,1.75), c(2.08,2.35)) %>% 170s + units::set_units(um) -> bw # units::set_units(µm) -> bw 170s > # set bandwidth midpoint: 170s > (x2 = st_set_dimensions(x, "band", values = 0.5 * (bw[,1]+bw[,2]), 170s + names = "bandwidth_midpoint", point = TRUE)) 170s stars object with 3 dimensions and 1 attribute 170s attribute(s): 170s Min. 1st Qu. Median Mean 3rd Qu. Max. 170s L7_ETMs.tif 1 54 69 68.91242 86 255 170s dimension(s): 170s from to offset delta refsys point 170s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 170s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 170s bandwidth_midpoint 1 6 NA NA udunits TRUE 170s values x/y 170s x NULL [x] 170s y NULL [y] 170s bandwidth_midpoint 0.4825 [um],...,2.215 [um] 170s > # set bandwidth intervals: 170s > (x3 = st_set_dimensions(x, "band", values = make_intervals(bw), names = "bandwidth")) 170s stars object with 3 dimensions and 1 attribute 170s attribute(s): 170s Min. 1st Qu. Median Mean 3rd Qu. Max. 170s L7_ETMs.tif 1 54 69 68.91242 86 255 170s dimension(s): 170s from to offset delta refsys point 170s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 170s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 170s bandwidth 1 6 NA NA udunits NA 170s values x/y 170s x NULL [x] 170s y NULL [y] 170s bandwidth [0.45,0.515) [um],...,[2.08,2.35) [um] 170s > 170s > x + x 170s stars object with 3 dimensions and 1 attribute 170s attribute(s): 170s Min. 1st Qu. Median Mean 3rd Qu. Max. 170s L7_ETMs.tif 2 108 138 137.8248 172 510 170s dimension(s): 170s from to offset delta refsys point x/y 170s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 170s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 170s band 1 6 NA NA NA NA 170s > x * x 170s stars object with 3 dimensions and 1 attribute 170s attribute(s): 170s Min. 1st Qu. Median Mean 3rd Qu. Max. 170s L7_ETMs.tif 1 2916 4761 5512.41 7396 65025 170s dimension(s): 170s from to offset delta refsys point x/y 170s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 170s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 170s band 1 6 NA NA NA NA 170s > x[,,,1:3] 170s stars object with 3 dimensions and 1 attribute 170s attribute(s): 170s Min. 1st Qu. Median Mean 3rd Qu. Max. 170s L7_ETMs.tif 21 58 70 70.36041 83 255 170s dimension(s): 170s from to offset delta refsys point x/y 170s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 170s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 170s band 1 3 NA NA NA NA 170s > x[,1:100,100:200,] 170s stars object with 3 dimensions and 1 attribute 170s attribute(s): 170s Min. 1st Qu. Median Mean 3rd Qu. Max. 170s L7_ETMs.tif 13 54 65 67.21531 77 252 170s dimension(s): 170s from to offset delta refsys point x/y 170s x 1 100 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 170s y 100 200 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 170s band 1 6 NA NA NA NA 170s > sqrt(x) 170s stars object with 3 dimensions and 1 attribute 170s attribute(s): 171s Min. 1st Qu. Median Mean 3rd Qu. Max. 171s L7_ETMs.tif 1 7.348469 8.306624 8.094006 9.273618 15.96872 171s dimension(s): 171s from to offset delta refsys point x/y 171s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 171s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 171s band 1 6 NA NA NA NA 171s > st_apply(x, 3, min) 171s stars object with 1 dimensions and 1 attribute 171s attribute(s): 171s Min. 1st Qu. Median Mean 3rd Qu. Max. 171s min 1 3 15 18.5 29.25 47 171s dimension(s): 171s from to 171s band 1 6 171s > st_apply(x, 1:2, max) 171s stars object with 2 dimensions and 1 attribute 171s attribute(s): 171s Min. 1st Qu. Median Mean 3rd Qu. Max. 171s max 55 85 96 99.36018 113 255 171s dimension(s): 171s from to offset delta refsys point x/y 171s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 171s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 171s > st_apply(x, 1:2, range) 171s stars object with 3 dimensions and 1 attribute 171s attribute(s): 171s Min. 1st Qu. Median Mean 3rd Qu. Max. 171s L7_ETMs.tif 1 50 71 72.43565 96 255 171s dimension(s): 172s from to offset delta refsys point x/y 172s range 1 2 NA NA NA NA 172s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 172s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 172s > 172s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 172s > x = read_stars(geomatrix) 172s > y = st_transform(x, st_crs(4326)) 172s > st_coordinates(x)[1:2,] 172s x y 172s 1 1841000 1144000 172s 2 1841002 1143995 172s > 172s > nc = system.file("nc/tos_O1_2001-2002.nc", package = "stars") 172s > if (nc != "" && require(PCICt, quietly = TRUE)) { 172s + print(x <- read_stars(nc)) 172s + print(st_bbox(x)) 172s + s = st_as_stars(st_bbox(x)) # inside = NA 172s + print(st_bbox(s)) 172s + s = st_as_stars(st_bbox(x), inside = TRUE) 172s + print(st_bbox(s)) 172s + s = st_as_stars(st_bbox(x), inside = FALSE) 172s + print(st_bbox(s)) 172s + (s = st_as_stars(st_bbox(x), dy = 1)) 172s + print(st_bbox(s)) 172s + print(identical(st_as_stars(st_bbox(x), dx = 1), st_as_stars(st_bbox(x), dy = 1))) 172s + s = st_as_stars(st_bbox(x), dx = 10) 172s + print(st_bbox(s)) 172s + s = st_as_stars(st_bbox(x), dx = 20) 172s + print(st_bbox(s)) 172s + x1 = x 172s + st_crs(x1) = "OGC:CRS84" 172s + print(identical(st_as_stars(st_bbox(x1), dx = 1), st_as_stars(st_bbox(x1), dx = units::set_units(1, degree)))) 172s + 172s + df = as.data.frame(x) 172s + if (require(units, quietly = TRUE)) 172s + print(units::drop_units(x)) 172s + 172s + print(dimnames(x)) 172s + dimnames(x) <- letters[1:3] 172s + print(dimnames(x)) 172s + } # PCICt 172s > 172s > st_as_stars() 172s stars object with 2 dimensions and 1 attribute 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. 172s values 0 0 0 0 0 0 172s dimension(s): 172s from to offset delta refsys x/y 172s x 1 360 -180 1 WGS 84 (CRS84) [x] 172s y 1 180 90 -1 WGS 84 (CRS84) [y] 172s > 172s > # multiple sub-datasets: 172s > nc_red = system.file("nc/reduced.nc", package = "stars") 172s > red = read_stars(nc_red) 172s sst, anom, err, ice, 172s > red 172s stars object with 4 dimensions and 4 attributes 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 172s sst [degree_Celsius] -1.80 -0.03 13.655 12.9940841 24.8125 32.97 4448 172s anom [degree_Celsius] -10.16 -0.58 -0.080 -0.1855812 0.2100 2.99 4448 172s err [degree_Celsius] 0.11 0.16 0.270 0.2626872 0.3200 0.84 4448 172s ice [percent] 0.01 0.47 0.920 0.7178118 0.9600 1.00 13266 172s dimension(s): 172s from to offset delta refsys x/y 172s x 1 180 -1 2 NA [x] 172s y 1 90 90 -2 NA [y] 172s zlev 1 1 0 [m] NA NA 172s time 1 1 1981-12-31 UTC NA POSIXct 172s > plot(red) 172s > 172s > x = st_xy2sfc(read_stars(tif)[,1:10,1:10,], as_points = FALSE) 172s > st_bbox(x) 172s xmin ymin xmax ymax 172s 288776.3 9120475.8 289061.3 9120760.8 172s > x = read_stars(tif) 172s > merge(split(x, "band")) 172s stars object with 3 dimensions and 1 attribute 172s attribute(s): 173s Min. 1st Qu. Median Mean 3rd Qu. Max. 173s X1.X2.X3.X4.X5.X6 1 54 69 68.91242 86 255 173s dimension(s): 173s from to offset delta refsys point values 173s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 173s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 173s attributes 1 6 NA NA NA NA X1,...,X6 173s x/y 173s x [x] 173s y [y] 173s attributes 173s > 173s > read_stars(c(tif,tif)) # merges as attributes 173s stars object with 3 dimensions and 2 attributes 173s attribute(s): 173s Min. 1st Qu. Median Mean 3rd Qu. Max. 173s L7_ETMs.tif 1 54 69 68.91242 86 255 173s L7_ETMs.tif.1 1 54 69 68.91242 86 255 173s dimension(s): 173s from to offset delta refsys point x/y 173s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 173s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 173s band 1 6 NA NA NA NA 173s > read_stars(c(tif,tif), along = "sensor") 173s stars object with 4 dimensions and 1 attribute 173s attribute(s), summary of first 1e+05 cells: 173s Min. 1st Qu. Median Mean 3rd Qu. Max. 173s L7_ETMs.tif 47 65 76 77.3419 87 255 173s dimension(s): 173s from to offset delta refsys point x/y 173s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 173s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 173s band 1 6 NA NA NA NA 173s sensor 1 2 NA NA NA NA 173s > read_stars(c(tif,tif), along = 4) 173s stars object with 4 dimensions and 1 attribute 173s attribute(s), summary of first 1e+05 cells: 173s Min. 1st Qu. Median Mean 3rd Qu. Max. 173s L7_ETMs.tif 47 65 76 77.3419 87 255 173s dimension(s): 173s from to offset delta refsys point x/y 173s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 173s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 173s band 1 6 NA NA NA NA 173s new_dim 1 2 NA NA NA NA 173s > read_stars(c(tif,tif), along = "band") 173s stars object with 3 dimensions and 1 attribute 173s attribute(s), summary of first 1e+05 cells: 173s Min. 1st Qu. Median Mean 3rd Qu. Max. 173s L7_ETMs.tif 47 65 76 77.3419 87 255 173s dimension(s): 173s from to offset delta refsys point x/y 173s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 173s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 173s band 1 12 NA NA NA NA 173s > read_stars(c(tif,tif), along = 3) 173s stars object with 3 dimensions and 1 attribute 173s attribute(s), summary of first 1e+05 cells: 173s Min. 1st Qu. Median Mean 3rd Qu. Max. 173s L7_ETMs.tif 47 65 76 77.3419 87 255 173s dimension(s): 173s from to offset delta refsys point x/y 173s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 173s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 173s band 1 12 NA NA NA NA 173s > 173s > # cut: 173s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 173s > x = read_stars(tif) 173s > cut(x, c(0, 50, 100, 255)) 174s stars object with 3 dimensions and 1 attribute 174s attribute(s): 174s L7_ETMs.tif 174s (0,50] :156060 174s (50,100] :503764 174s (100,255]: 77264 174s dimension(s): 174s from to offset delta refsys point x/y 174s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 174s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 174s band 1 6 NA NA NA NA 174s > cut(x[,,,1,drop=TRUE], c(0, 50, 100, 255)) 174s stars object with 2 dimensions and 1 attribute 174s attribute(s): 174s L7_ETMs.tif 174s (0,50] : 1 174s (50,100] :117134 174s (100,255]: 5713 174s dimension(s): 174s from to offset delta refsys point x/y 174s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 174s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 174s > plot(cut(x[,,,1,drop=TRUE], c(0, 50, 100, 255))) 174s > 174s > st_bbox(st_dimensions(x)) 174s xmin ymin xmax ymax 174s 288776.3 9110728.8 298722.8 9120760.8 174s > x[x < 0] = NA 174s > x[is.na(x)] = 0 174s > 174s > # c: 174s > f = system.file("netcdf/avhrr-only-v2.19810902.nc", package = "starsdata") 174s > if (FALSE && f != "") { 174s + files = c("avhrr-only-v2.19810901.nc", 174s + "avhrr-only-v2.19810902.nc", 174s + "avhrr-only-v2.19810903.nc", 174s + "avhrr-only-v2.19810904.nc", 174s + "avhrr-only-v2.19810905.nc", 174s + "avhrr-only-v2.19810906.nc", 174s + "avhrr-only-v2.19810907.nc", 174s + "avhrr-only-v2.19810908.nc", 174s + "avhrr-only-v2.19810909.nc") 174s + l = list() 174s + for (f in files) { 174s + from = system.file(paste0("netcdf/", f), package = "starsdata") 174s + l[[f]] = read_stars(from, sub = c("sst", "anom")) 174s + } 174s + ret = do.call(c, l) 174s + print(ret) 174s + ret = adrop(c(l[[1]], l[[2]], l[[3]], along = list(times = as.Date("1981-09-01") + 0:2))) 174s + print(ret) 174s + #ret = adrop(adrop(c(l[[1]], l[[2]], l[[3]], along = "times"))) 174s + #print(ret) 174s + } 174s > 174s > st_dimensions(list(matrix(1, 4, 4))) # st_dimensions.default 174s from to point values 174s X1 1 1 FALSE 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 174s > 174s > if (FALSE && require("starsdata", quietly = TRUE)) { 174s + # curvilinear: 174s + s5p = system.file( 174s + "sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", 174s + package = "starsdata") 174s + print(s5p) 174s + lat_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/latitude") 174s + lon_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/longitude") 174s + nit_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column") 174s + lat = read_stars(lat_ds) 174s + lon = read_stars(lon_ds) 174s + nit = read_stars(nit_ds) 174s + nit[[1]][nit[[1]] > 9e+36] = NA 174s + 174s + ll = setNames(c(lon, lat), c("x", "y")) 174s + nit.c = st_as_stars(nit, curvilinear = ll) 174s + print(nit.c) 174s + 174s + s5p = system.file( 174s + "sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", 174s + package = "starsdata") 174s + nit.c2 = read_stars(s5p, 174s + sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 174s + curvilinear = c("//PRODUCT/latitude", "//PRODUCT/longitude")) 174s + print(all.equal(nit.c, nit.c2)) 174s + } 174s > 174s BEGIN TEST subset.R 174s 174s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 174s Copyright (C) 2024 The R Foundation for Statistical Computing 174s Platform: x86_64-pc-linux-gnu 174s 174s R is free software and comes with ABSOLUTELY NO WARRANTY. 174s You are welcome to redistribute it under certain conditions. 174s Type 'license()' or 'licence()' for distribution details. 174s 174s R is a collaborative project with many contributors. 174s Type 'contributors()' for more information and 174s 'citation()' on how to cite R or R packages in publications. 174s 174s Type 'demo()' for some demos, 'help()' for on-line help, or 174s 'help.start()' for an HTML browser interface to help. 174s Type 'q()' to quit R. 174s 174s > suppressPackageStartupMessages(library(stars)) 174s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 174s > x = read_stars(tif) 175s > y = st_set_dimensions(x, "band", point = TRUE) 175s > y[,1:10, 1:10, c(1,4,3,2)] 175s stars object with 3 dimensions and 1 attribute 175s attribute(s): 175s Min. 1st Qu. Median Mean 3rd Qu. Max. 175s L7_ETMs.tif 25 45 57 56.535 64 97 175s dimension(s): 175s from to offset delta refsys point values x/y 175s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 175s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 175s band 1 4 NA NA NA TRUE 1,...,2 175s > y = st_set_dimensions(x, "band", point = NA) 175s > y[,1:10, 1:10, c(1,4,3,2)] 175s stars object with 3 dimensions and 1 attribute 175s attribute(s): 175s Min. 1st Qu. Median Mean 3rd Qu. Max. 175s L7_ETMs.tif 25 45 57 56.535 64 97 175s dimension(s): 175s from to offset delta refsys point values x/y 175s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 175s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 175s band 1 4 NA NA NA NA [1,2),...,[2,3) 175s > y = st_set_dimensions(x, "band", point = FALSE) 175s > y[,1:10, 1:10, c(1,4,3,2)] 175s stars object with 3 dimensions and 1 attribute 175s attribute(s): 175s Min. 1st Qu. Median Mean 3rd Qu. Max. 175s L7_ETMs.tif 25 45 57 56.535 64 97 175s dimension(s): 175s from to offset delta refsys point values x/y 175s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 175s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 175s band 1 4 NA NA NA FALSE [1,2),...,[2,3) 175s > y = st_set_dimensions(x, "band", values = letters[1:6]) 175s > y[,1:10, 1:10, c(1,4,3,2)] 175s stars object with 3 dimensions and 1 attribute 175s attribute(s): 175s Min. 1st Qu. Median Mean 3rd Qu. Max. 175s L7_ETMs.tif 25 45 57 56.535 64 97 175s dimension(s): 175s from to offset delta refsys point values x/y 175s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 175s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 175s band 1 4 NA NA NA NA a,...,b 175s > y = st_set_dimensions(x, "band", values = letters[1:6], point = NA) 175s > y[,1:10, 1:10, c(1,4,3,2)] 175s stars object with 3 dimensions and 1 attribute 175s attribute(s): 175s Min. 1st Qu. Median Mean 3rd Qu. Max. 175s L7_ETMs.tif 25 45 57 56.535 64 97 175s dimension(s): 175s from to offset delta refsys point values x/y 175s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 175s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 175s band 1 4 NA NA NA NA a,...,b 175s > y = st_set_dimensions(x, "band", values = letters[1:6], point = TRUE) 175s > y[,1:10, 1:10, c(1,4,3,2)] 175s stars object with 3 dimensions and 1 attribute 175s attribute(s): 175s Min. 1st Qu. Median Mean 3rd Qu. Max. 175s L7_ETMs.tif 25 45 57 56.535 64 97 175s dimension(s): 175s from to offset delta refsys point values x/y 175s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 175s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 175s band 1 4 NA NA NA TRUE a,...,b 175s > 175s BEGIN TEST testthat.R 175s 175s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 175s Copyright (C) 2024 The R Foundation for Statistical Computing 175s Platform: x86_64-pc-linux-gnu 175s 175s R is free software and comes with ABSOLUTELY NO WARRANTY. 175s You are welcome to redistribute it under certain conditions. 175s Type 'license()' or 'licence()' for distribution details. 175s 175s R is a collaborative project with many contributors. 175s Type 'contributors()' for more information and 175s 'citation()' on how to cite R or R packages in publications. 175s 175s Type 'demo()' for some demos, 'help()' for on-line help, or 175s 'help.start()' for an HTML browser interface to help. 175s Type 'q()' to quit R. 175s 175s > ## load dependencies 175s > library(testthat) 175s > suppressPackageStartupMessages(library(stars)) 176s > 176s > ## test package 176s > test_check("stars") 182s [ FAIL 0 | WARN 0 | SKIP 5 | PASS 69 ] 182s 182s == Skipped tests (5) =========================================================== 182s * On CRAN (4): 'test-OpenStreetMap.R:2:3', 'test-ncdf.R:1:1', 182s 'test-ncproxy.R:1:1', 'test-rectilinear.R:89:3' 182s * {cubble} is not installed (1): 'test-cubble.R:2:3' 182s 182s [ FAIL 0 | WARN 0 | SKIP 5 | PASS 69 ] 182s > 182s BEGIN TEST tidy.R 182s 182s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 182s Copyright (C) 2024 The R Foundation for Statistical Computing 182s Platform: x86_64-pc-linux-gnu 182s 182s R is free software and comes with ABSOLUTELY NO WARRANTY. 182s You are welcome to redistribute it under certain conditions. 182s Type 'license()' or 'licence()' for distribution details. 182s 182s R is a collaborative project with many contributors. 182s Type 'contributors()' for more information and 182s 'citation()' on how to cite R or R packages in publications. 182s 182s Type 'demo()' for some demos, 'help()' for on-line help, or 182s 'help.start()' for an HTML browser interface to help. 182s Type 'q()' to quit R. 182s 182s > suppressPackageStartupMessages(library(stars)) 183s > 183s > if (require(dplyr, quietly = TRUE)) { 183s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 183s + x <- read_stars(tif) 183s + (y <- x %>% select(L7_ETMs.tif)) 183s + (y <- x %>% filter(band > 2)) 183s + (z <- x %>% mutate(foo = 2* L7_ETMs.tif)) 183s + x %>% pull(L7_ETMs.tif) %>% class() 183s + x %>% filter(x > 289900) 183s + x %>% slice("x", 50:100) 183s + 183s + suppressPackageStartupMessages(library(ggplot2)) 183s + ggplot() + geom_stars(data = x) + coord_equal() + facet_wrap(~band) 183s + ggplot() + geom_stars(data = x[,c(1:50,52:100),c(1:45, 50:60)]) + 183s + coord_equal() 183s + ggplot() + geom_stars(data = x[,1:10,1:10,1:2], sf = TRUE) + facet_wrap(~band) 183s + 183s + 183s + # see https://github.com/r-spatial/stars/issues/539 : 183s + x <- read_stars(system.file("tif/L7_ETMs.tif", package = "stars")) 183s + y <- transmute(x, L7_ETMs.tif = units::set_units(L7_ETMs.tif, degree_C)) # same as x but with units 183s + 183s + x - slice(x, 'band', 1) # runs as expected, recycling the second object 183s + try(y - slice(x, 'band', 1)) # fails as expected because x is unitless 183s + try(x - slice(y, 'band', 1)) # fails as expected 183s + y - slice(y, 'band', 1) # runs as expected 183s + } 183s 183s Attaching package: 'dplyr' 183s 183s The following objects are masked from 'package:stats': 183s 183s filter, lag 183s 183s The following objects are masked from 'package:base': 183s 183s intersect, setdiff, setequal, union 183s 183s Error in Ops.units(X[[i]], ...) : 183s both operands of the expression should be "units" objects 183s Error in Ops.units(X[[i]], ...) : 183s both operands of the expression should be "units" objects 183s stars object with 3 dimensions and 1 attribute 183s attribute(s): 183s Min. 1st Qu. Median Mean 3rd Qu. Max. 183s L7_ETMs.tif [degree_Celsius] -184 -19 -8 -10.2353 0 131 183s dimension(s): 184s from to offset delta refsys point x/y 184s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 184s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 184s band 1 6 NA NA NA NA 184s > 184s BEGIN TEST transform.R 184s 184s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 184s Copyright (C) 2024 The R Foundation for Statistical Computing 184s Platform: x86_64-pc-linux-gnu 184s 184s R is free software and comes with ABSOLUTELY NO WARRANTY. 184s You are welcome to redistribute it under certain conditions. 184s Type 'license()' or 'licence()' for distribution details. 184s 184s R is a collaborative project with many contributors. 184s Type 'contributors()' for more information and 184s 'citation()' on how to cite R or R packages in publications. 184s 184s Type 'demo()' for some demos, 'help()' for on-line help, or 184s 'help.start()' for an HTML browser interface to help. 184s Type 'q()' to quit R. 184s 184s > suppressPackageStartupMessages(library(stars)) 184s > #suppressPackageStartupMessages(library(lwgeom)) 184s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 184s > (x = read_stars(geomatrix)) 184s stars object with 2 dimensions and 1 attribute 184s attribute(s): 184s Min. 1st Qu. Median Mean 3rd Qu. Max. 184s geomatrix.tif 74 107 123 126.765 132 255 184s dimension(s): 184s from to offset delta refsys point x/y 184s x 1 20 1841002 1.5 WGS 84 / UTM zone 11N TRUE [x] 184s y 1 20 1144003 -1.5 WGS 84 / UTM zone 11N TRUE [y] 184s sheared raster with parameters: -5 -5 184s > new = st_crs(4326) 184s > y = st_transform(x, new) 184s > plot(st_transform(st_as_sfc(st_bbox(x)), new), col = NA, border = 'red') 184s > plot(st_as_sfc(y, as_points=FALSE), col = NA, border = 'green', axes = TRUE, add = TRUE) 184s > image(y, add = TRUE) 184s > plot(st_as_sfc(y, as_points=TRUE), pch=3, cex=.5, col = 'blue', add = TRUE) 184s > plot(st_transform(st_as_sfc(x, as_points=FALSE), new), add = TRUE) 184s > 184s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 184s > x = read_stars(tif)[,1:10,1:10,1:3] 184s > x_ = st_transform(x, st_crs(4326)) 184s > ## IGNORE_RDIFF_BEGIN 184s > if (require(lwgeom, quietly = TRUE)) { 184s + x__ = st_transform_proj(x, st_crs(4326)$proj4string) 184s + st_crs(x_) = st_crs(x__) 184s + print(all.equal(x_,x__)) 184s + 184s + # x__ = st_transform(x, x_) #now in st_warp 184s + # all.equal(x_, x__) 184s + 184s + x = st_xy2sfc(x, as_points = FALSE) 184s + (x_ = st_transform(x, st_crs(4326))) 184s + (x__ = st_transform_proj(x, st_crs(4326))) 184s + print(all.equal(x_,x__,check.attributes = FALSE)) 184s + } 184s Linking to liblwgeom 3.0.0beta1 r16016, GEOS 3.13.0, PROJ 9.5.1 184s 184s Attaching package: 'lwgeom' 184s 184s The following object is masked from 'package:sf': 184s 184s st_perimeter 184s 185s [1] TRUE 185s [1] TRUE 185s > ## IGNORE_RDIFF_END 185s > 185s > # nothing to transform: now errs: 185s > try(st_transform(st_as_stars(list(m = matrix(1,10,10))), st_crs(4326))) 185s > try(st_transform_proj(st_as_stars(list(m = matrix(1,10,10))), st_crs(4326))) 185s > 185s Error in st_transform.stars(st_as_stars(list(m = matrix(1, 10, 10))), : 185s !is.na(st_crs(x)) is not TRUE 185s Error in st_transform_proj.stars(st_as_stars(list(m = matrix(1, 10, 10))), : 185s !is.na(st_crs(x)) is not TRUE 185s BEGIN TEST warp.R 185s 185s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 185s Copyright (C) 2024 The R Foundation for Statistical Computing 185s Platform: x86_64-pc-linux-gnu 185s 185s R is free software and comes with ABSOLUTELY NO WARRANTY. 185s You are welcome to redistribute it under certain conditions. 185s Type 'license()' or 'licence()' for distribution details. 185s 185s R is a collaborative project with many contributors. 185s Type 'contributors()' for more information and 185s 'citation()' on how to cite R or R packages in publications. 185s 185s Type 'demo()' for some demos, 'help()' for on-line help, or 185s 'help.start()' for an HTML browser interface to help. 185s Type 'q()' to quit R. 185s 185s > suppressPackageStartupMessages(library(stars)) 185s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 185s > x = read_stars(geomatrix) 185s > # can stars reproduce what gdal does, by default? 185s > x2 = st_warp(x, use_gdal = TRUE, no_data_value = -9999) 185s > y = st_warp(x, x2) 185s > if (interactive()) { plot(x2, breaks = "equal", axes=TRUE) } 185s > if (interactive()) { plot(y, breaks = "equal", axes=TRUE) } 185s > names(x2) = names(y) 185s > all.equal(x2, y) # yes? 185s [1] TRUE 185s > 185s > # does gdal reproduce with stars template object? 185s > (x2 = setNames(st_warp(x, y, use_gdal = TRUE, no_data_value=-1), "file.tif")) 185s stars object with 2 dimensions and 1 attribute 185s attribute(s): 185s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 185s file.tif 74 115 123 126.4289 132 255 224 185s dimension(s): 185s from to offset delta refsys point x/y 185s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N FALSE [x] 185s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N FALSE [y] 185s > 185s > # does gdal reproduce what stars does, default cell size? 185s > (x2 = st_warp(x, crs = st_crs(x), use_gdal = FALSE)) 185s stars object with 2 dimensions and 1 attribute 185s attribute(s): 185s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 185s geomatrix.tif 74 115 123 126.4289 132 255 224 185s dimension(s): 185s from to offset delta refsys x/y 185s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N [x] 185s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N [y] 185s > (y = setNames(st_warp(x, x2, use_gdal = TRUE, debug = FALSE, no_data_value=-1), "file.tif")) 185s stars object with 2 dimensions and 1 attribute 185s attribute(s): 185s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 185s file.tif 74 115 123 126.4289 132 255 224 185s dimension(s): 185s from to offset delta refsys point x/y 185s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N FALSE [x] 185s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N FALSE [y] 185s > 185s > # try with multiple bands: 185s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 185s > (x1 = read_stars(tif)) 186s stars object with 3 dimensions and 1 attribute 186s attribute(s): 186s Min. 1st Qu. Median Mean 3rd Qu. Max. 186s L7_ETMs.tif 1 54 69 68.91242 86 255 186s dimension(s): 186s from to offset delta refsys point x/y 186s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 186s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 186s band 1 6 NA NA NA NA 186s > tifcp = tempfile(fileext = ".tif") 186s > file.copy(tif, tifcp) 186s [1] TRUE 186s > x1p = read_stars(tifcp, proxy = TRUE) 186s > st_dimensions(x1p) 186s from to offset delta refsys point x/y 186s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 186s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 186s band 1 6 NA NA NA NA 186s > (x1a = st_warp(x1, crs = st_crs(4326))) 186s stars object with 3 dimensions and 1 attribute 186s attribute(s): 186s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 186s L7_ETMs.tif 1 54 69 68.93072 86 255 8778 186s dimension(s): 186s from to offset delta refsys x/y 186s x 1 350 -34.92 0.0002592 WGS 84 [x] 186s y 1 352 -7.95 -0.0002592 WGS 84 [y] 186s band 1 6 NA NA NA 186s > (x1b = setNames(st_warp(x1, x1p, use_gdal = TRUE, no_data_value=-1), "file.tif")) 186s stars object with 3 dimensions and 1 attribute 186s attribute(s): 186s Min. 1st Qu. Median Mean 3rd Qu. Max. 186s file.tif 1 54 69 68.91242 86 255 186s dimension(s): 186s from to offset delta refsys point x/y 186s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 186s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 186s band 1 6 NA NA NA NA 186s > 186s > # does gdal reproduce what stars does? Smaller grid: 186s > x2 = st_warp(x, crs = st_crs(x), use_gdal = FALSE, cellsize = 3) 186s > # x2 = x2[,2:43,2:43] 186s > if (interactive()) { plot(x2, breaks = "equal", axes=TRUE, reset = FALSE) } 186s > if (interactive()) { plot(st_as_sfc(st_bbox(x2)), add = TRUE, col = NA, border = 'red') } 186s > ### doesn't work: FIXME: check with more recent GDAL: 186s > (y = setNames(st_warp(x, x2, use_gdal = TRUE, debug = FALSE, no_data_value=-1), "file.tif")) 186s stars object with 2 dimensions and 1 attribute 186s attribute(s): 186s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 186s file.tif 74 107 123 126.6584 132 255 727 186s dimension(s): 186s from to offset delta refsys point x/y 186s x 1 44 1840902 3 WGS 84 / UTM zone 11N FALSE [x] 186s y 1 44 1144003 -3 WGS 84 / UTM zone 11N FALSE [y] 186s > if (interactive()) { plot(y, breaks = "equal") } 186s > names(x2) = names(y) 186s > # isTRUE(all.equal(x2, y, check.attributes=FALSE)) 186s > m = mean(as.vector(x2[[1]]==y[[1]]), na.rm = TRUE) 186s > u = unique(as.vector(x2[[1]]-y[[1]])) 186s > 186s > g = st_as_stars() 186s > attr(g, "dimensions")$x$offset = 0 186s > g$values = as.vector(t(matrix(seq_len(prod(dim(g))), 180, 360))) 186s > if (interactive()) { plot(g, axes=TRUE) } 186s > a = st_warp(g, st_as_stars(), use_gdal=FALSE) 186s > b = st_warp(g, st_as_stars(), use_gdal=TRUE, no_data_value = -1) 186s > all.equal(a, b, check.attributes = FALSE) 186s [1] TRUE 186s > 186s BEGIN TEST write.R 186s 186s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 186s Copyright (C) 2024 The R Foundation for Statistical Computing 186s Platform: x86_64-pc-linux-gnu 186s 186s R is free software and comes with ABSOLUTELY NO WARRANTY. 186s You are welcome to redistribute it under certain conditions. 186s Type 'license()' or 'licence()' for distribution details. 186s 186s R is a collaborative project with many contributors. 186s Type 'contributors()' for more information and 186s 'citation()' on how to cite R or R packages in publications. 186s 186s Type 'demo()' for some demos, 'help()' for on-line help, or 186s 'help.start()' for an HTML browser interface to help. 186s Type 'q()' to quit R. 186s 186s > suppressPackageStartupMessages(library(stars)) 187s > 187s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 187s > (x = read_stars(tif)) 187s stars object with 3 dimensions and 1 attribute 187s attribute(s): 187s Min. 1st Qu. Median Mean 3rd Qu. Max. 187s L7_ETMs.tif 1 54 69 68.91242 86 255 187s dimension(s): 187s from to offset delta refsys point x/y 187s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 187s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 187s band 1 6 NA NA NA NA 187s > 187s > # write stars object: 187s > write_stars(x, tempfile(), driver = "GTiff") 187s > 187s > # write stars_proxy object: 187s > (x = read_stars(tif, proxy = TRUE)) 187s stars_proxy object with 1 attribute in 1 file(s): 187s $L7_ETMs.tif 187s [1] "[...]/L7_ETMs.tif" 187s 187s dimension(s): 187s from to offset delta refsys point x/y 187s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 187s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 187s band 1 6 NA NA NA NA 187s > write_stars(x, tempfile(), driver = "GTiff") 187s 187s > 188s autopkgtest [19:30:02]: test run-unit-test: -----------------------] 188s run-unit-test PASS 188s autopkgtest [19:30:02]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 188s autopkgtest [19:30:02]: test pkg-r-autopkgtest: preparing testbed 251s autopkgtest [19:31:05]: testbed dpkg architecture: amd64 251s autopkgtest [19:31:05]: testbed apt version: 2.9.18 251s autopkgtest [19:31:05]: @@@@@@@@@@@@@@@@@@@@ test bed setup 251s autopkgtest [19:31:05]: testbed release detected to be: plucky 252s autopkgtest [19:31:06]: updating testbed package index (apt update) 252s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 252s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 252s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 252s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 252s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [884 kB] 252s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 252s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.4 kB] 252s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [95.5 kB] 252s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [125 kB] 252s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [832 kB] 252s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [299 kB] 252s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [7208 B] 252s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [1328 B] 252s Fetched 2446 kB in 0s (6932 kB/s) 253s Reading package lists... 253s + lsb_release --codename --short 253s + RELEASE=plucky 253s + cat 253s + [ plucky != trusty ] 253s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 253s Reading package lists... 253s Building dependency tree... 253s Reading state information... 254s Calculating upgrade... 254s The following packages will be upgraded: 254s initramfs-tools initramfs-tools-bin initramfs-tools-core 254s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 254s Need to get 84.0 kB of archives. 254s After this operation, 9216 B of additional disk space will be used. 254s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.145ubuntu1 [7942 B] 254s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.145ubuntu1 [51.2 kB] 254s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.145ubuntu1 [24.8 kB] 255s Fetched 84.0 kB in 0s (2842 kB/s) 255s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108876 files and directories currently installed.) 255s Preparing to unpack .../initramfs-tools_0.145ubuntu1_all.deb ... 255s Unpacking initramfs-tools (0.145ubuntu1) over (0.142ubuntu35) ... 255s Preparing to unpack .../initramfs-tools-core_0.145ubuntu1_all.deb ... 255s Unpacking initramfs-tools-core (0.145ubuntu1) over (0.142ubuntu35) ... 255s Preparing to unpack .../initramfs-tools-bin_0.145ubuntu1_amd64.deb ... 255s Unpacking initramfs-tools-bin (0.145ubuntu1) over (0.142ubuntu35) ... 255s Setting up initramfs-tools-bin (0.145ubuntu1) ... 255s Setting up initramfs-tools-core (0.145ubuntu1) ... 255s Setting up initramfs-tools (0.145ubuntu1) ... 255s update-initramfs: deferring update (trigger activated) 255s Processing triggers for man-db (2.13.0-1) ... 256s Processing triggers for initramfs-tools (0.145ubuntu1) ... 256s update-initramfs: Generating /boot/initrd.img-6.12.0-12-generic 256s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 265s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 265s + /usr/lib/apt/apt-helper analyze-pattern ?true 265s + uname -r 265s + sed s/\./\\./g 265s + running_kernel_pattern=^linux-.*6\.12\.0-12-generic.* 265s + apt list ?obsolete 265s + tail -n+2 265s + cut -d/ -f1 265s + grep -v ^linux-.*6\.12\.0-12-generic.* 265s + true 265s + obsolete_pkgs= 265s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove 265s Reading package lists... 266s Building dependency tree... 266s Reading state information... 266s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 266s + grep -q trusty /etc/lsb-release 266s + [ ! -d /usr/share/doc/unattended-upgrades ] 266s + [ ! -d /usr/share/doc/lxd ] 266s + [ ! -d /usr/share/doc/lxd-client ] 266s + [ ! -d /usr/share/doc/snapd ] 266s + type iptables 266s + cat 266s + chmod 755 /etc/rc.local 266s + . /etc/rc.local 266s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 266s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 266s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 266s + uname -m 266s + [ x86_64 = ppc64le ] 266s + [ -d /run/systemd/system ] 266s + systemd-detect-virt --quiet --vm 266s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 266s + cat 266s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 266s + echo COMPRESS=lz4 266s autopkgtest [19:31:20]: upgrading testbed (apt dist-upgrade and autopurge) 266s Reading package lists... 266s Building dependency tree... 266s Reading state information... 267s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 267s Starting 2 pkgProblemResolver with broken count: 0 267s Done 267s Entering ResolveByKeep 268s 268s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 268s Reading package lists... 268s Building dependency tree... 268s Reading state information... 268s Starting pkgProblemResolver with broken count: 0 268s Starting 2 pkgProblemResolver with broken count: 0 268s Done 269s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 269s autopkgtest [19:31:23]: rebooting testbed after setup commands that affected boot 273s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 285s Reading package lists... 285s Building dependency tree... 285s Reading state information... 285s Starting pkgProblemResolver with broken count: 0 286s Starting 2 pkgProblemResolver with broken count: 0 286s Done 286s The following NEW packages will be installed: 286s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 286s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 286s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-14 286s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 286s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gdal-data gdal-plugins gfortran 286s gfortran-14 gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu 286s icu-devtools javascript-common libabsl20230802 libaec0 libaom3 286s libarmadillo14 libarpack2t64 libasan8 libavif16 libblas-dev libblas3 286s libblosc1 libbz2-dev libcairo2 libcc1-0 libcfitsio10t64 libdatrie1 libdav1d7 286s libde265-0 libdeflate-dev libdeflate0 libfontconfig1 libfreexl1 libfyba0t64 286s libgav1-1 libgcc-14-dev libgdal36 libgeos-c1t64 libgeos3.13.0 libgeotiff5 286s libgfortran-14-dev libgfortran5 libgif7 libgomp1 libgpgmepp6t64 286s libgraphite2-3 libharfbuzz0b libhdf4-0-alt libhdf5-310 libhdf5-hl-310 286s libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libhwasan0 libice6 286s libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 286s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 286s libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 286s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 286s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 286s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 286s libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack-dev liblapack3 286s liblcms2-2 liblerc4 liblsan0 libltdl7 liblua5.4-0 liblzma-dev libminizip1t64 286s libmpc3 libmysqlclient24 libncurses-dev libnetcdf19t64 libodbc2 libodbcinst2 286s libogdi4.1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 286s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 286s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpoppler145 libpq5 286s libproj25 libqhull-r8.0 libquadmath0 librav1e0.7 libreadline-dev librttopo1 286s libsharpyuv0 libsm6 libsnappy1v5 libspatialite8t64 libstdc++-14-dev 286s libsvtav1enc2 libsz2 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev 286s libtk8.6 libtsan2 libubsan1 libudunits2-0 libudunits2-data liburiparser1 286s libwebp7 libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 286s libxss1 libxt6t64 libyuv0 littler mysql-common node-bootstrap-sass 286s node-html5shiv node-normalize.css pandoc pandoc-data pkg-r-autopkgtest 286s pkgconf pkgconf-bin proj-data r-base-core r-base-dev r-cran-abind 286s r-cran-areal r-cran-askpass r-cran-base64enc r-cran-bdsmatrix r-cran-brio 286s r-cran-bslib r-cran-cachem r-cran-cairo r-cran-callr r-cran-class 286s r-cran-classint r-cran-cli r-cran-clue r-cran-cluster r-cran-codetools 286s r-cran-collapse r-cran-colorspace r-cran-commonmark r-cran-covr r-cran-cpp11 286s r-cran-crayon r-cran-curl r-cran-dbi r-cran-deldir r-cran-desc 286s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-evaluate 286s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fnn r-cran-fontawesome 286s r-cran-formula r-cran-fs r-cran-future r-cran-future.apply r-cran-generics 286s r-cran-ggforce r-cran-ggplot2 r-cran-ggthemes r-cran-globals r-cran-glue 286s r-cran-goftest r-cran-gridextra r-cran-gtable r-cran-highr r-cran-htmltools 286s r-cran-httpuv r-cran-httr r-cran-intervals r-cran-isoband r-cran-jquerylib 286s r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later 286s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-listenv 286s r-cran-littler r-cran-lmtest r-cran-lwgeom r-cran-magrittr r-cran-mapdata 286s r-cran-maps r-cran-mass r-cran-matrix r-cran-maxlik r-cran-memoise 286s r-cran-mgcv r-cran-mime r-cran-misctools r-cran-munsell r-cran-ncdfgeom 286s r-cran-ncmeta r-cran-nlme r-cran-openssl r-cran-parallelly r-cran-pbapply 286s r-cran-pcict r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 286s r-cran-pkgload r-cran-plm r-cran-polyclip r-cran-praise r-cran-processx 286s r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr r-cran-r6 286s r-cran-randomforest r-cran-rappdirs r-cran-raster r-cran-rbibutils 286s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rdpack r-cran-rex 286s r-cran-rlang r-cran-rmarkdown r-cran-rnetcdf r-cran-rpart r-cran-rprojroot 286s r-cran-s2 r-cran-sandwich r-cran-sass r-cran-scales r-cran-sf r-cran-shiny 286s r-cran-sourcetools r-cran-sp r-cran-spacetime r-cran-spatstat 286s r-cran-spatstat.data r-cran-spatstat.explore r-cran-spatstat.geom 286s r-cran-spatstat.linnet r-cran-spatstat.model r-cran-spatstat.random 286s r-cran-spatstat.sparse r-cran-spatstat.utils r-cran-stars r-cran-stringi 286s r-cran-stringr r-cran-survival r-cran-sys r-cran-systemfonts r-cran-tensor 286s r-cran-terra r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 286s r-cran-tinytex r-cran-tweenr r-cran-units r-cran-utf8 r-cran-vctrs 286s r-cran-viridis r-cran-viridislite r-cran-waldo r-cran-withr r-cran-wk 286s r-cran-xfun r-cran-xtable r-cran-xts r-cran-yaml r-cran-zoo unixodbc-common 286s unzip x11-common xdg-utils zip zlib1g-dev 286s 0 upgraded, 343 newly installed, 0 to remove and 0 not upgraded. 286s Need to get 398 MB of archives. 286s After this operation, 1143 MB of additional disk space will be used. 286s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 286s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 286s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-13ubuntu1 [11.9 MB] 287s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-13ubuntu1 [1032 B] 287s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 287s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 287s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-13ubuntu1 [47.6 kB] 287s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-13ubuntu1 [148 kB] 287s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-13ubuntu1 [29.1 kB] 287s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-13ubuntu1 [2998 kB] 287s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-13ubuntu1 [1317 kB] 287s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-13ubuntu1 [2732 kB] 287s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-13ubuntu1 [1177 kB] 287s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-13ubuntu1 [1634 kB] 287s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-13ubuntu1 [153 kB] 287s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-13ubuntu1 [2815 kB] 287s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-13ubuntu1 [23.4 MB] 287s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-13ubuntu1 [534 kB] 287s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 287s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 287s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-13ubuntu1 [2508 kB] 287s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-13ubuntu1 [13.3 MB] 287s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-13ubuntu1 [21.1 kB] 287s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 287s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 287s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 287s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 287s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 287s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 287s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 287s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 287s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 287s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 287s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 287s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 287s Get:36 http://ftpmaster.internal/ubuntu plucky/universe amd64 gdal-data all 3.10.1+dfsg-1build2 [269 kB] 287s Get:37 http://ftpmaster.internal/ubuntu plucky/universe amd64 gdal-plugins amd64 3.10.1+dfsg-1build2 [25.6 kB] 287s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-13ubuntu1 [909 kB] 287s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-13ubuntu1 [965 kB] 287s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-13ubuntu1 [12.5 MB] 287s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-13ubuntu1 [13.2 kB] 287s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1022 B] 287s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.1.0-2ubuntu1 [1172 B] 287s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 287s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 11+nmu1 [5936 B] 287s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libabsl20230802 amd64 20230802.1-4ubuntu2 [563 kB] 287s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 287s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libaom3 amd64 3.11.0-1 [2761 kB] 287s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-4 [332 kB] 287s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-4 [3177 kB] 287s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 libarpack2t64 amd64 3.9.1-4 [120 kB] 287s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 libarmadillo14 amd64 1:14.2.1+dfsg-1 [105 kB] 287s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 libdav1d7 amd64 1.5.1-1 [743 kB] 287s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgav1-1 amd64 0.19.0-3 [697 kB] 287s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 librav1e0.7 amd64 0.7.1-9 [1025 kB] 287s Get:56 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2686 kB] 287s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 287s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 287s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libyuv0 amd64 0.0.1899.20250103-1 [352 kB] 287s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 libavif16 amd64 1.1.1-1ubuntu1 [113 kB] 287s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.0-4 [307 kB] 287s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libsnappy1v5 amd64 1.2.1-1 [30.4 kB] 287s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 libblosc1 amd64 1.21.5+ds-1build1 [36.2 kB] 287s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 287s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 287s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 287s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 287s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 287s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 287s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcfitsio10t64 amd64 4.5.0-5 [629 kB] 287s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 287s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libde265-0 amd64 1.0.15-1build4 [168 kB] 287s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 287s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 287s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfyba0t64 amd64 4.1.1-11build1 [119 kB] 287s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [22.9 kB] 287s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfreexl1 amd64 2.0.0-1build2 [41.7 kB] 287s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeos3.13.0 amd64 3.13.0-1 [1017 kB] 287s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeos-c1t64 amd64 3.13.0-1 [103 kB] 287s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 proj-data all 9.5.1-1 [7924 kB] 287s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 287s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 287s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 287s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 287s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 287s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 libproj25 amd64 9.5.1-1 [1499 kB] 287s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeotiff5 amd64 1.7.3-1 [63.0 kB] 287s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libgif7 amd64 5.2.2-1ubuntu1 [35.2 kB] 287s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 287s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf4-0-alt amd64 4.3.0-1 [285 kB] 287s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 287s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-aomdec amd64 1.19.5-1build1 [11.6 kB] 287s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-libde265 amd64 1.19.5-1build1 [9074 B] 287s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif1 amd64 1.19.5-1build1 [422 kB] 287s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 liburiparser1 amd64 0.9.8+dfsg-2 [46.8 kB] 287s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmlbase1t64 amd64 1.3.0-12build1 [49.9 kB] 287s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmldom1t64 amd64 1.3.0-12build1 [156 kB] 287s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmlengine1t64 amd64 1.3.0-12build1 [71.4 kB] 287s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 mysql-common all 5.8+1.1.1 [6800 B] 287s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libmysqlclient24 amd64 8.4.4-0ubuntu1 [1256 kB] 287s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 287s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf19t64 amd64 1:4.9.2-6ubuntu2 [531 kB] 287s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libltdl7 amd64 2.5.4-2.1 [46.1 kB] 287s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libodbc2 amd64 2.3.12-2ubuntu1 [186 kB] 287s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 unixodbc-common all 2.3.12-2ubuntu1 [9044 B] 287s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libodbcinst2 amd64 2.3.12-2ubuntu1 [34.1 kB] 287s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 libogdi4.1 amd64 4.1.1+ds-5 [219 kB] 287s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu3 [217 kB] 287s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgmepp6t64 amd64 1.24.1-2ubuntu1 [126 kB] 287s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 287s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libpoppler145 amd64 25.01.0-2 [1280 kB] 287s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libpq5 amd64 17.2-1build2 [153 kB] 287s Get:113 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 287s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 librttopo1 amd64 1.1.0-3build2 [191 kB] 287s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 libspatialite8t64 amd64 5.1.0-3build1 [1919 kB] 287s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3build1 [1028 kB] 287s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgdal36 amd64 3.10.1+dfsg-1build2 [10.2 MB] 288s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 288s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 288s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 288s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 288s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 288s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 288s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 288s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 288s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 288s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 288s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 288s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 288s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 288s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 288s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 288s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 288s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 288s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 288s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 288s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 288s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 288s Get:139 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 288s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.0-4 [6486 kB] 288s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 288s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5-2 [384 kB] 288s Get:143 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 288s Get:144 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 288s Get:145 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.1-1 [255 kB] 288s Get:146 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.1-1 [52.6 kB] 288s Get:147 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.1-1 [29.1 kB] 288s Get:148 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 288s Get:149 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 288s Get:150 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu3 [214 kB] 288s Get:151 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu3 [201 kB] 288s Get:152 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu3 [6768 B] 288s Get:153 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.42-4ubuntu3 [747 kB] 288s Get:154 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 288s Get:155 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 288s Get:156 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.44-3 [300 kB] 288s Get:157 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 288s Get:158 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 288s Get:159 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 288s Get:160 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 288s Get:161 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 288s Get:162 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 288s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 libudunits2-data all 2.2.28-7build1 [19.4 kB] 288s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 libudunits2-0 amd64 2.2.28-7build1 [54.1 kB] 288s Get:165 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 288s Get:166 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 288s Get:167 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 288s Get:168 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-0ubuntu1 [67.5 kB] 288s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.2-1build1 [28.9 MB] 288s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 288s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 288s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 288s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 288s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 288s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 288s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 288s Get:177 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.3-1 [189 kB] 288s Get:178 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 288s Get:179 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 288s Get:180 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 288s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.2-1build1 [4342 B] 288s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 288s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 288s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.3-1 [1348 kB] 288s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 288s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 288s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 288s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 288s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 288s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 288s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 288s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 288s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 288s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 288s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 288s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 288s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 288s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 288s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 288s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 288s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 288s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 288s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 288s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-e1071 amd64 1.7-16-1 [565 kB] 288s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernsmooth amd64 2.23-26-1 [94.5 kB] 288s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-classint amd64 0.4-11+dfsg-1 [108 kB] 288s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 288s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 288s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 288s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-wk amd64 0.9.4-1 [1791 kB] 288s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-s2 amd64 1.1.7-1 [2023 kB] 288s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-units amd64 0.8-5+dfsg-1 [275 kB] 289s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sf amd64 1.0-19+dfsg-1 [3313 kB] 289s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-areal all 0.1.8+dfsg-2 [1004 kB] 289s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 289s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 289s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 289s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bdsmatrix amd64 1.3-7-1 [299 kB] 289s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 289s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 289s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 289s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 289s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 289s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 289s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.8.9+dfsg-1 [445 kB] 289s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 289s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 289s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 289s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 289s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 289s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 289s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cairo amd64 1.6-2-1 [88.8 kB] 289s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.8.1-1 [397 kB] 289s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.5-1 [356 kB] 289s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 289s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cluster amd64 2.1.8-1 [579 kB] 289s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-clue amd64 0.3-66-1 [968 kB] 289s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 289s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-collapse amd64 2.0.19-1 [3476 kB] 289s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 289s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 289s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 289s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rex all 1.2.1-1 [129 kB] 289s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 6.1.0+dfsg-1 [195 kB] 289s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.2.0+dfsg-1 [405 kB] 289s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 289s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 289s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 289s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-covr amd64 3.6.4+dfsg-1 [303 kB] 289s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.1-1 [233 kB] 289s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 289s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 289s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 289s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 289s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 289s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB] 289s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 289s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 289s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-globals all 0.16.3-1 [120 kB] 289s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 289s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-parallelly amd64 1.41.0-1 [507 kB] 289s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 289s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future.apply all 1.11.3+dfsg-1 [175 kB] 289s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 289s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 289s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 289s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.167-1 [2320 kB] 289s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-2-1 [4456 kB] 289s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 289s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 289s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB] 289s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 289s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 289s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 289s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 289s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tweenr amd64 2.0.3-1 [410 kB] 289s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB] 289s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-systemfonts amd64 1.2.1-1 [347 kB] 289s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 289s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggforce amd64 0.4.2-1 [1777 kB] 289s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB] 289s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 289s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggthemes all 5.1.0-1 [434 kB] 289s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-goftest amd64 1.2-3-1 [59.5 kB] 289s Get:285 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 289s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.50+dfsg-1 [568 kB] 289s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 289s Get:288 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 289s Get:289 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 289s Get:290 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 289s Get:291 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-intervals amd64 0.15.5-1 [602 kB] 289s Get:292 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 289s Get:293 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 289s Get:294 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-zoo amd64 1.8-12-2 [984 kB] 289s Get:295 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lmtest amd64 0.9.40-1 [396 kB] 289s Get:296 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lwgeom amd64 0.2-14-1 [463 kB] 289s Get:297 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-maps amd64 3.4.2-1 [2359 kB] 289s Get:298 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mapdata amd64 2.3.1-1 [23.5 MB] 289s Get:299 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-misctools all 0.6-28-1 [99.9 kB] 289s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sandwich all 3.1-1-1 [1483 kB] 289s Get:301 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-maxlik all 1.5-2.1-1 [1083 kB] 289s Get:302 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rnetcdf amd64 2.9-1-1build2 [233 kB] 289s Get:303 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 289s Get:304 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ncmeta all 0.3.6-1 [360 kB] 290s Get:305 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stars all 0.6-7-1 [4411 kB] 290s Get:306 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ncdfgeom all 1.1.6+dfsg-1 [4124 kB] 290s Get:307 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 290s Get:308 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pcict amd64 0.5-4.4-1 [94.4 kB] 290s Get:309 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 290s Get:310 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-2 [125 kB] 290s Get:311 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 290s Get:312 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rbibutils amd64 2.3-1 [1023 kB] 290s Get:313 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rdpack all 2.6.2-1 [757 kB] 290s Get:314 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plm all 2.6-5-1 [1815 kB] 290s Get:315 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 290s Get:316 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-randomforest amd64 4.7-1.2-1 [216 kB] 290s Get:317 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sp amd64 1:2.1-4+dfsg-1 [1472 kB] 290s Get:318 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-terra amd64 1.8-10-1 [4257 kB] 290s Get:319 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-raster amd64 3.6-31-1 [3176 kB] 290s Get:320 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.54-1 [147 kB] 290s Get:321 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 290s Get:322 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 290s Get:323 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 290s Get:324 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 290s Get:325 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.9.1+dfsg-1 [3111 kB] 290s Get:326 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 290s Get:327 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB] 290s Get:328 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB] 290s Get:329 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xts amd64 0.14.1-1 [1198 kB] 290s Get:330 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spacetime all 1.3-2-2 [2775 kB] 290s Get:331 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.utils amd64 3.1-2-1 [383 kB] 290s Get:332 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.data all 3.1-4-1 [4047 kB] 290s Get:333 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.geom amd64 3.2-9-2 [3946 kB] 290s Get:334 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.random amd64 3.2-3-1 [1169 kB] 290s Get:335 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tensor all 1.5-4 [15.7 kB] 290s Get:336 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.sparse amd64 3.1-0-1 [221 kB] 290s Get:337 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.explore amd64 3.2-7-1 [3432 kB] 290s Get:338 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.model amd64 3.2-11-1 [3385 kB] 290s Get:339 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.linnet amd64 3.1-5-1 [1468 kB] 290s Get:340 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat amd64 3.0-8-1 [3881 kB] 290s Get:341 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-1 [150 kB] 290s Get:342 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 290s Get:343 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 291s Preconfiguring packages ... 291s Fetched 398 MB in 4s (95.7 MB/s) 291s Selecting previously unselected package libisl23:amd64. 292s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108876 files and directories currently installed.) 292s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 292s Unpacking libisl23:amd64 (0.27-1) ... 292s Selecting previously unselected package libmpc3:amd64. 292s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 292s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 292s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 292s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-13ubuntu1_amd64.deb ... 292s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-13ubuntu1) ... 292s Selecting previously unselected package cpp-14. 292s Preparing to unpack .../003-cpp-14_14.2.0-13ubuntu1_amd64.deb ... 292s Unpacking cpp-14 (14.2.0-13ubuntu1) ... 292s Selecting previously unselected package cpp-x86-64-linux-gnu. 292s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 292s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 292s Selecting previously unselected package cpp. 292s Preparing to unpack .../005-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ... 292s Unpacking cpp (4:14.1.0-2ubuntu1) ... 292s Selecting previously unselected package libcc1-0:amd64. 292s Preparing to unpack .../006-libcc1-0_14.2.0-13ubuntu1_amd64.deb ... 292s Unpacking libcc1-0:amd64 (14.2.0-13ubuntu1) ... 292s Selecting previously unselected package libgomp1:amd64. 292s Preparing to unpack .../007-libgomp1_14.2.0-13ubuntu1_amd64.deb ... 292s Unpacking libgomp1:amd64 (14.2.0-13ubuntu1) ... 292s Selecting previously unselected package libitm1:amd64. 292s Preparing to unpack .../008-libitm1_14.2.0-13ubuntu1_amd64.deb ... 292s Unpacking libitm1:amd64 (14.2.0-13ubuntu1) ... 292s Selecting previously unselected package libasan8:amd64. 292s Preparing to unpack .../009-libasan8_14.2.0-13ubuntu1_amd64.deb ... 292s Unpacking libasan8:amd64 (14.2.0-13ubuntu1) ... 292s Selecting previously unselected package liblsan0:amd64. 292s Preparing to unpack .../010-liblsan0_14.2.0-13ubuntu1_amd64.deb ... 292s Unpacking liblsan0:amd64 (14.2.0-13ubuntu1) ... 292s Selecting previously unselected package libtsan2:amd64. 292s Preparing to unpack .../011-libtsan2_14.2.0-13ubuntu1_amd64.deb ... 292s Unpacking libtsan2:amd64 (14.2.0-13ubuntu1) ... 292s Selecting previously unselected package libubsan1:amd64. 292s Preparing to unpack .../012-libubsan1_14.2.0-13ubuntu1_amd64.deb ... 292s Unpacking libubsan1:amd64 (14.2.0-13ubuntu1) ... 292s Selecting previously unselected package libhwasan0:amd64. 292s Preparing to unpack .../013-libhwasan0_14.2.0-13ubuntu1_amd64.deb ... 292s Unpacking libhwasan0:amd64 (14.2.0-13ubuntu1) ... 292s Selecting previously unselected package libquadmath0:amd64. 292s Preparing to unpack .../014-libquadmath0_14.2.0-13ubuntu1_amd64.deb ... 292s Unpacking libquadmath0:amd64 (14.2.0-13ubuntu1) ... 292s Selecting previously unselected package libgcc-14-dev:amd64. 292s Preparing to unpack .../015-libgcc-14-dev_14.2.0-13ubuntu1_amd64.deb ... 292s Unpacking libgcc-14-dev:amd64 (14.2.0-13ubuntu1) ... 292s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 293s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-13ubuntu1_amd64.deb ... 293s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-13ubuntu1) ... 293s Selecting previously unselected package gcc-14. 293s Preparing to unpack .../017-gcc-14_14.2.0-13ubuntu1_amd64.deb ... 293s Unpacking gcc-14 (14.2.0-13ubuntu1) ... 293s Selecting previously unselected package gcc-x86-64-linux-gnu. 293s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 293s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 293s Selecting previously unselected package gcc. 293s Preparing to unpack .../019-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ... 293s Unpacking gcc (4:14.1.0-2ubuntu1) ... 293s Selecting previously unselected package libstdc++-14-dev:amd64. 293s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-13ubuntu1_amd64.deb ... 293s Unpacking libstdc++-14-dev:amd64 (14.2.0-13ubuntu1) ... 293s Selecting previously unselected package g++-14-x86-64-linux-gnu. 293s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-13ubuntu1_amd64.deb ... 293s Unpacking g++-14-x86-64-linux-gnu (14.2.0-13ubuntu1) ... 293s Selecting previously unselected package g++-14. 293s Preparing to unpack .../022-g++-14_14.2.0-13ubuntu1_amd64.deb ... 293s Unpacking g++-14 (14.2.0-13ubuntu1) ... 293s Selecting previously unselected package g++-x86-64-linux-gnu. 293s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 293s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 293s Selecting previously unselected package g++. 294s Preparing to unpack .../024-g++_4%3a14.1.0-2ubuntu1_amd64.deb ... 294s Unpacking g++ (4:14.1.0-2ubuntu1) ... 294s Selecting previously unselected package build-essential. 294s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ... 294s Unpacking build-essential (12.10ubuntu1) ... 294s Selecting previously unselected package dctrl-tools. 294s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ... 294s Unpacking dctrl-tools (2.24-3build3) ... 294s Selecting previously unselected package fonts-dejavu-mono. 294s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ... 294s Unpacking fonts-dejavu-mono (2.37-8) ... 294s Selecting previously unselected package fonts-dejavu-core. 294s Preparing to unpack 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unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 294s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 294s Selecting previously unselected package fonts-mathjax. 294s Preparing to unpack .../034-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 294s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 294s Selecting previously unselected package gdal-data. 294s Preparing to unpack .../035-gdal-data_3.10.1+dfsg-1build2_all.deb ... 294s Unpacking gdal-data (3.10.1+dfsg-1build2) ... 294s Selecting previously unselected package gdal-plugins:amd64. 294s Preparing to unpack .../036-gdal-plugins_3.10.1+dfsg-1build2_amd64.deb ... 294s Unpacking gdal-plugins:amd64 (3.10.1+dfsg-1build2) ... 294s Selecting previously unselected package libgfortran5:amd64. 294s Preparing to unpack .../037-libgfortran5_14.2.0-13ubuntu1_amd64.deb ... 294s Unpacking libgfortran5:amd64 (14.2.0-13ubuntu1) ... 294s Selecting previously unselected package libgfortran-14-dev:amd64. 294s Preparing to unpack .../038-libgfortran-14-dev_14.2.0-13ubuntu1_amd64.deb ... 294s Unpacking libgfortran-14-dev:amd64 (14.2.0-13ubuntu1) ... 294s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 294s Preparing to unpack .../039-gfortran-14-x86-64-linux-gnu_14.2.0-13ubuntu1_amd64.deb ... 294s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-13ubuntu1) ... 295s Selecting previously unselected package gfortran-14. 295s Preparing to unpack .../040-gfortran-14_14.2.0-13ubuntu1_amd64.deb ... 295s Unpacking gfortran-14 (14.2.0-13ubuntu1) ... 295s Selecting previously unselected package gfortran-x86-64-linux-gnu. 295s Preparing to unpack .../041-gfortran-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 295s Unpacking gfortran-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 295s Selecting previously unselected package gfortran. 295s Preparing to unpack .../042-gfortran_4%3a14.1.0-2ubuntu1_amd64.deb ... 295s Unpacking gfortran (4:14.1.0-2ubuntu1) ... 295s Selecting previously unselected package icu-devtools. 295s Preparing to unpack .../043-icu-devtools_76.1-1ubuntu2_amd64.deb ... 295s Unpacking icu-devtools (76.1-1ubuntu2) ... 295s Selecting previously unselected package javascript-common. 295s Preparing to unpack .../044-javascript-common_11+nmu1_all.deb ... 295s Unpacking javascript-common (11+nmu1) ... 295s Selecting previously unselected package libabsl20230802:amd64. 295s Preparing to unpack .../045-libabsl20230802_20230802.1-4ubuntu2_amd64.deb ... 295s Unpacking libabsl20230802:amd64 (20230802.1-4ubuntu2) ... 295s Selecting previously unselected package libaec0:amd64. 295s Preparing to unpack .../046-libaec0_1.1.3-1_amd64.deb ... 295s Unpacking libaec0:amd64 (1.1.3-1) ... 295s Selecting previously unselected package libaom3:amd64. 295s Preparing to unpack .../047-libaom3_3.11.0-1_amd64.deb ... 295s Unpacking libaom3:amd64 (3.11.0-1) ... 295s Selecting previously unselected package libblas3:amd64. 295s Preparing to unpack .../048-libblas3_3.12.0-4_amd64.deb ... 295s Unpacking libblas3:amd64 (3.12.0-4) ... 295s Selecting previously unselected package liblapack3:amd64. 295s Preparing to unpack .../049-liblapack3_3.12.0-4_amd64.deb ... 295s Unpacking liblapack3:amd64 (3.12.0-4) ... 295s Selecting previously unselected package libarpack2t64:amd64. 295s Preparing to unpack .../050-libarpack2t64_3.9.1-4_amd64.deb ... 295s Unpacking libarpack2t64:amd64 (3.9.1-4) ... 295s Selecting previously unselected package libarmadillo14. 295s Preparing to unpack .../051-libarmadillo14_1%3a14.2.1+dfsg-1_amd64.deb ... 295s Unpacking libarmadillo14 (1:14.2.1+dfsg-1) ... 295s Selecting previously unselected package libdav1d7:amd64. 295s Preparing to unpack .../052-libdav1d7_1.5.1-1_amd64.deb ... 295s Unpacking libdav1d7:amd64 (1.5.1-1) ... 295s Selecting previously unselected package libgav1-1:amd64. 295s Preparing to unpack .../053-libgav1-1_0.19.0-3_amd64.deb ... 295s Unpacking libgav1-1:amd64 (0.19.0-3) ... 295s Selecting previously unselected package librav1e0.7:amd64. 295s Preparing to unpack .../054-librav1e0.7_0.7.1-9_amd64.deb ... 295s Unpacking librav1e0.7:amd64 (0.7.1-9) ... 295s Selecting previously unselected package libsvtav1enc2:amd64. 295s Preparing to unpack .../055-libsvtav1enc2_2.3.0+dfsg-1_amd64.deb ... 295s Unpacking libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... 295s Selecting previously unselected package libjpeg-turbo8:amd64. 296s Preparing to unpack .../056-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 296s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 296s Selecting previously unselected package libjpeg8:amd64. 296s Preparing to unpack .../057-libjpeg8_8c-2ubuntu11_amd64.deb ... 296s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 296s Selecting previously unselected package libyuv0:amd64. 296s Preparing to unpack .../058-libyuv0_0.0.1899.20250103-1_amd64.deb ... 296s Unpacking libyuv0:amd64 (0.0.1899.20250103-1) ... 296s Selecting previously unselected package libavif16:amd64. 296s Preparing to unpack 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(0.44.0-3) ... 296s Selecting previously unselected package libxcb-render0:amd64. 296s Preparing to unpack .../065-libxcb-render0_1.17.0-2_amd64.deb ... 296s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 296s Selecting previously unselected package libxcb-shm0:amd64. 296s Preparing to unpack .../066-libxcb-shm0_1.17.0-2_amd64.deb ... 296s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 296s Selecting previously unselected package libxrender1:amd64. 296s Preparing to unpack .../067-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 296s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 296s Selecting previously unselected package libcairo2:amd64. 296s Preparing to unpack .../068-libcairo2_1.18.2-2_amd64.deb ... 296s Unpacking libcairo2:amd64 (1.18.2-2) ... 296s Selecting previously unselected package libcfitsio10t64:amd64. 296s Preparing to unpack .../069-libcfitsio10t64_4.5.0-5_amd64.deb ... 296s Unpacking libcfitsio10t64:amd64 (4.5.0-5) ... 296s Selecting previously unselected package libdatrie1:amd64. 296s Preparing to unpack .../070-libdatrie1_0.2.13-3build1_amd64.deb ... 296s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 296s Selecting previously unselected package libde265-0:amd64. 296s Preparing to unpack .../071-libde265-0_1.0.15-1build4_amd64.deb ... 296s Unpacking libde265-0:amd64 (1.0.15-1build4) ... 296s Selecting previously unselected package libdeflate0:amd64. 296s Preparing to unpack .../072-libdeflate0_1.23-1_amd64.deb ... 296s Unpacking libdeflate0:amd64 (1.23-1) ... 296s Selecting previously unselected package libdeflate-dev:amd64. 296s Preparing to unpack .../073-libdeflate-dev_1.23-1_amd64.deb ... 296s Unpacking libdeflate-dev:amd64 (1.23-1) ... 296s Selecting previously unselected package libfyba0t64:amd64. 296s Preparing to unpack .../074-libfyba0t64_4.1.1-11build1_amd64.deb ... 296s Unpacking libfyba0t64:amd64 (4.1.1-11build1) ... 296s Selecting previously unselected package libminizip1t64:amd64. 296s Preparing to unpack .../075-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 296s Unpacking libminizip1t64:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 296s Selecting previously unselected package libfreexl1:amd64. 296s Preparing to unpack .../076-libfreexl1_2.0.0-1build2_amd64.deb ... 296s Unpacking libfreexl1:amd64 (2.0.0-1build2) ... 296s Selecting previously unselected package libgeos3.13.0:amd64. 296s Preparing to unpack .../077-libgeos3.13.0_3.13.0-1_amd64.deb ... 296s Unpacking libgeos3.13.0:amd64 (3.13.0-1) ... 296s Selecting previously unselected package libgeos-c1t64:amd64. 296s Preparing to unpack .../078-libgeos-c1t64_3.13.0-1_amd64.deb ... 296s Unpacking libgeos-c1t64:amd64 (3.13.0-1) ... 296s Selecting previously unselected package proj-data. 296s Preparing to unpack .../079-proj-data_9.5.1-1_all.deb ... 296s Unpacking proj-data (9.5.1-1) ... 297s Selecting previously unselected package libjbig0:amd64. 297s Preparing to unpack .../080-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 297s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 297s Selecting previously unselected package liblerc4:amd64. 297s Preparing to unpack .../081-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 297s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 297s Selecting previously unselected package libsharpyuv0:amd64. 297s Preparing to unpack .../082-libsharpyuv0_1.5.0-0.1_amd64.deb ... 297s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 297s Selecting previously unselected package libwebp7:amd64. 297s Preparing to unpack .../083-libwebp7_1.5.0-0.1_amd64.deb ... 297s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 297s Selecting previously unselected package libtiff6:amd64. 297s Preparing to unpack .../084-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 297s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 297s Selecting previously unselected package libproj25:amd64. 297s Preparing to unpack .../085-libproj25_9.5.1-1_amd64.deb ... 297s Unpacking libproj25:amd64 (9.5.1-1) ... 297s Selecting previously unselected package libgeotiff5:amd64. 297s Preparing to unpack .../086-libgeotiff5_1.7.3-1_amd64.deb ... 297s Unpacking libgeotiff5:amd64 (1.7.3-1) ... 297s Selecting previously unselected package libgif7:amd64. 297s Preparing to unpack .../087-libgif7_5.2.2-1ubuntu1_amd64.deb ... 297s Unpacking libgif7:amd64 (5.2.2-1ubuntu1) ... 297s Selecting previously unselected package libsz2:amd64. 297s Preparing to unpack .../088-libsz2_1.1.3-1_amd64.deb ... 297s Unpacking libsz2:amd64 (1.1.3-1) ... 297s Selecting previously unselected package libhdf4-0-alt:amd64. 297s Preparing to unpack .../089-libhdf4-0-alt_4.3.0-1_amd64.deb ... 297s Unpacking libhdf4-0-alt:amd64 (4.3.0-1) ... 297s Selecting previously unselected package libhdf5-310:amd64. 297s Preparing to unpack .../090-libhdf5-310_1.14.5+repack-3_amd64.deb ... 297s Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ... 297s Selecting previously unselected package libheif-plugin-aomdec:amd64. 297s Preparing to unpack .../091-libheif-plugin-aomdec_1.19.5-1build1_amd64.deb ... 297s Unpacking libheif-plugin-aomdec:amd64 (1.19.5-1build1) ... 297s Selecting previously unselected package libheif-plugin-libde265:amd64. 297s Preparing to unpack .../092-libheif-plugin-libde265_1.19.5-1build1_amd64.deb ... 297s Unpacking libheif-plugin-libde265:amd64 (1.19.5-1build1) ... 297s Selecting previously unselected package libheif1:amd64. 297s Preparing to unpack .../093-libheif1_1.19.5-1build1_amd64.deb ... 297s Unpacking libheif1:amd64 (1.19.5-1build1) ... 297s Selecting previously unselected package liburiparser1:amd64. 297s Preparing to unpack .../094-liburiparser1_0.9.8+dfsg-2_amd64.deb ... 297s Unpacking liburiparser1:amd64 (0.9.8+dfsg-2) ... 297s Selecting previously unselected package libkmlbase1t64:amd64. 297s Preparing to unpack .../095-libkmlbase1t64_1.3.0-12build1_amd64.deb ... 297s Unpacking libkmlbase1t64:amd64 (1.3.0-12build1) ... 297s Selecting previously unselected package libkmldom1t64:amd64. 297s Preparing to unpack .../096-libkmldom1t64_1.3.0-12build1_amd64.deb ... 297s Unpacking libkmldom1t64:amd64 (1.3.0-12build1) ... 297s Selecting previously unselected package libkmlengine1t64:amd64. 297s Preparing to unpack .../097-libkmlengine1t64_1.3.0-12build1_amd64.deb ... 297s Unpacking libkmlengine1t64:amd64 (1.3.0-12build1) ... 297s Selecting previously unselected package mysql-common. 297s Preparing to unpack .../098-mysql-common_5.8+1.1.1_all.deb ... 297s Unpacking mysql-common (5.8+1.1.1) ... 297s Selecting previously unselected package libmysqlclient24:amd64. 297s Preparing to unpack .../099-libmysqlclient24_8.4.4-0ubuntu1_amd64.deb ... 297s Unpacking libmysqlclient24:amd64 (8.4.4-0ubuntu1) ... 297s Selecting previously unselected package libhdf5-hl-310:amd64. 297s Preparing to unpack .../100-libhdf5-hl-310_1.14.5+repack-3_amd64.deb ... 297s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3) ... 297s Selecting previously unselected package libnetcdf19t64:amd64. 297s Preparing to unpack .../101-libnetcdf19t64_1%3a4.9.2-6ubuntu2_amd64.deb ... 297s Unpacking libnetcdf19t64:amd64 (1:4.9.2-6ubuntu2) ... 297s Selecting previously unselected package libltdl7:amd64. 297s Preparing to unpack .../102-libltdl7_2.5.4-2.1_amd64.deb ... 297s Unpacking libltdl7:amd64 (2.5.4-2.1) ... 297s Selecting previously unselected package libodbc2:amd64. 298s Preparing to unpack .../103-libodbc2_2.3.12-2ubuntu1_amd64.deb ... 298s Unpacking libodbc2:amd64 (2.3.12-2ubuntu1) ... 298s Selecting previously unselected package unixodbc-common. 298s Preparing to unpack .../104-unixodbc-common_2.3.12-2ubuntu1_all.deb ... 298s Unpacking unixodbc-common (2.3.12-2ubuntu1) ... 298s Selecting previously unselected package libodbcinst2:amd64. 298s Preparing to unpack .../105-libodbcinst2_2.3.12-2ubuntu1_amd64.deb ... 298s Unpacking libodbcinst2:amd64 (2.3.12-2ubuntu1) ... 298s Selecting previously unselected package libogdi4.1:amd64. 298s Preparing to unpack .../106-libogdi4.1_4.1.1+ds-5_amd64.deb ... 298s Unpacking libogdi4.1:amd64 (4.1.1+ds-5) ... 298s Selecting previously unselected package libopenjp2-7:amd64. 298s Preparing to unpack .../107-libopenjp2-7_2.5.0-2ubuntu3_amd64.deb ... 298s Unpacking libopenjp2-7:amd64 (2.5.0-2ubuntu3) ... 298s Selecting previously unselected package libgpgmepp6t64:amd64. 298s Preparing to unpack .../108-libgpgmepp6t64_1.24.1-2ubuntu1_amd64.deb ... 298s Unpacking libgpgmepp6t64:amd64 (1.24.1-2ubuntu1) ... 298s Selecting previously unselected package liblcms2-2:amd64. 298s Preparing to unpack .../109-liblcms2-2_2.16-2_amd64.deb ... 298s Unpacking liblcms2-2:amd64 (2.16-2) ... 298s Selecting previously unselected package libpoppler145:amd64. 298s Preparing to unpack .../110-libpoppler145_25.01.0-2_amd64.deb ... 298s Unpacking libpoppler145:amd64 (25.01.0-2) ... 298s Selecting previously unselected package libpq5:amd64. 298s Preparing to unpack .../111-libpq5_17.2-1build2_amd64.deb ... 298s Unpacking libpq5:amd64 (17.2-1build2) ... 298s Selecting previously unselected package libqhull-r8.0:amd64. 298s Preparing to unpack .../112-libqhull-r8.0_2020.2-6build1_amd64.deb ... 298s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 298s Selecting previously unselected package librttopo1:amd64. 298s Preparing to unpack .../113-librttopo1_1.1.0-3build2_amd64.deb ... 298s Unpacking librttopo1:amd64 (1.1.0-3build2) ... 298s Selecting previously unselected package libspatialite8t64:amd64. 298s Preparing to unpack .../114-libspatialite8t64_5.1.0-3build1_amd64.deb ... 298s Unpacking libspatialite8t64:amd64 (5.1.0-3build1) ... 298s Selecting previously unselected package libxerces-c3.2t64:amd64. 298s Preparing to unpack .../115-libxerces-c3.2t64_3.2.4+debian-1.3build1_amd64.deb ... 298s Unpacking libxerces-c3.2t64:amd64 (3.2.4+debian-1.3build1) ... 298s Selecting previously unselected package libgdal36:amd64. 298s Preparing to unpack .../116-libgdal36_3.10.1+dfsg-1build2_amd64.deb ... 298s Unpacking libgdal36:amd64 (3.10.1+dfsg-1build2) ... 298s Selecting previously unselected package libgraphite2-3:amd64. 298s Preparing to unpack .../117-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 298s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 298s Selecting previously unselected package libharfbuzz0b:amd64. 298s Preparing to unpack .../118-libharfbuzz0b_10.2.0-1_amd64.deb ... 298s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 298s Selecting previously unselected package x11-common. 298s Preparing to unpack .../119-x11-common_1%3a7.7+23ubuntu3_all.deb ... 298s Unpacking x11-common (1:7.7+23ubuntu3) ... 298s Selecting previously unselected package libice6:amd64. 298s Preparing to unpack .../120-libice6_2%3a1.1.1-1_amd64.deb ... 298s Unpacking libice6:amd64 (2:1.1.1-1) ... 298s Selecting previously unselected package libicu-dev:amd64. 298s Preparing to unpack .../121-libicu-dev_76.1-1ubuntu2_amd64.deb ... 298s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ... 299s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 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libjs-json (0~20221030+~1.0.8-1) ... 300s Selecting previously unselected package libjs-prettify. 300s Preparing to unpack .../138-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 300s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 300s Selecting previously unselected package liblapack-dev:amd64. 300s Preparing to unpack .../139-liblapack-dev_3.12.0-4_amd64.deb ... 300s Unpacking liblapack-dev:amd64 (3.12.0-4) ... 300s Selecting previously unselected package liblua5.4-0:amd64. 300s Preparing to unpack .../140-liblua5.4-0_5.4.7-1_amd64.deb ... 300s Unpacking liblua5.4-0:amd64 (5.4.7-1) ... 300s Selecting previously unselected package libncurses-dev:amd64. 300s Preparing to unpack .../141-libncurses-dev_6.5-2_amd64.deb ... 300s Unpacking libncurses-dev:amd64 (6.5-2) ... 300s Selecting previously unselected package libthai-data. 300s Preparing to unpack .../142-libthai-data_0.1.29-2build1_all.deb ... 300s Unpacking libthai-data (0.1.29-2build1) ... 300s Selecting previously unselected package libthai0:amd64. 300s Preparing to unpack .../143-libthai0_0.1.29-2build1_amd64.deb ... 300s Unpacking libthai0:amd64 (0.1.29-2build1) ... 300s Selecting previously unselected package libpango-1.0-0:amd64. 300s Preparing to unpack .../144-libpango-1.0-0_1.56.1-1_amd64.deb ... 300s Unpacking libpango-1.0-0:amd64 (1.56.1-1) ... 300s Selecting previously unselected package libpangoft2-1.0-0:amd64. 300s Preparing to unpack .../145-libpangoft2-1.0-0_1.56.1-1_amd64.deb ... 300s Unpacking libpangoft2-1.0-0:amd64 (1.56.1-1) ... 300s Selecting previously unselected package libpangocairo-1.0-0:amd64. 300s Preparing to unpack .../146-libpangocairo-1.0-0_1.56.1-1_amd64.deb ... 300s Unpacking libpangocairo-1.0-0:amd64 (1.56.1-1) ... 300s Selecting previously unselected package libpaper2:amd64. 300s Preparing to unpack .../147-libpaper2_2.2.5-0.3_amd64.deb ... 300s Unpacking libpaper2:amd64 (2.2.5-0.3) ... 300s Selecting previously unselected package libpaper-utils. 300s Preparing to unpack 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.../153-libpkgconf3_1.8.1-4_amd64.deb ... 300s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 300s Selecting previously unselected package zlib1g-dev:amd64. 300s Preparing to unpack .../154-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 300s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 300s Selecting previously unselected package libpng-dev:amd64. 300s Preparing to unpack .../155-libpng-dev_1.6.44-3_amd64.deb ... 300s Unpacking libpng-dev:amd64 (1.6.44-3) ... 300s Selecting previously unselected package libreadline-dev:amd64. 300s Preparing to unpack .../156-libreadline-dev_8.2-6_amd64.deb ... 300s Unpacking libreadline-dev:amd64 (8.2-6) ... 301s Selecting previously unselected package libsm6:amd64. 301s Preparing to unpack .../157-libsm6_2%3a1.2.4-1_amd64.deb ... 301s Unpacking libsm6:amd64 (2:1.2.4-1) ... 301s Selecting previously unselected package libtcl8.6:amd64. 301s Preparing to unpack .../158-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 301s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 301s Selecting previously unselected package libxft2:amd64. 301s Preparing to unpack .../159-libxft2_2.3.6-1build1_amd64.deb ... 301s Unpacking libxft2:amd64 (2.3.6-1build1) ... 301s Selecting previously unselected package libxss1:amd64. 301s Preparing to unpack .../160-libxss1_1%3a1.2.3-1build3_amd64.deb ... 301s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 301s Selecting previously unselected package libtk8.6:amd64. 301s Preparing to unpack .../161-libtk8.6_8.6.16-1_amd64.deb ... 301s Unpacking libtk8.6:amd64 (8.6.16-1) ... 301s Selecting previously unselected package libudunits2-data. 301s Preparing to unpack .../162-libudunits2-data_2.2.28-7build1_all.deb ... 301s Unpacking libudunits2-data (2.2.28-7build1) ... 301s Selecting previously unselected package libudunits2-0. 301s Preparing to unpack .../163-libudunits2-0_2.2.28-7build1_amd64.deb ... 301s Unpacking libudunits2-0 (2.2.28-7build1) ... 301s Selecting previously unselected package libxt6t64:amd64. 301s Preparing to unpack .../164-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 301s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 301s Selecting previously unselected package zip. 301s Preparing to unpack .../165-zip_3.0-14ubuntu2_amd64.deb ... 301s Unpacking zip (3.0-14ubuntu2) ... 301s Selecting previously unselected package unzip. 301s Preparing to unpack .../166-unzip_6.0-28ubuntu6_amd64.deb ... 301s Unpacking unzip (6.0-28ubuntu6) ... 301s Selecting previously unselected package xdg-utils. 301s Preparing to unpack .../167-xdg-utils_1.2.1-0ubuntu1_all.deb ... 301s Unpacking xdg-utils (1.2.1-0ubuntu1) ... 301s Selecting previously unselected package r-base-core. 301s Preparing to unpack .../168-r-base-core_4.4.2-1build1_amd64.deb ... 301s Unpacking r-base-core (4.4.2-1build1) ... 302s Selecting previously unselected package r-cran-littler. 302s Preparing to unpack .../169-r-cran-littler_0.3.20-2_amd64.deb ... 302s Unpacking r-cran-littler (0.3.20-2) ... 302s 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.../175-pandoc_3.1.11.1+ds-2_amd64.deb ... 302s Unpacking pandoc (3.1.11.1+ds-2) ... 303s Selecting previously unselected package liblzma-dev:amd64. 303s Preparing to unpack .../176-liblzma-dev_5.6.3-1_amd64.deb ... 303s Unpacking liblzma-dev:amd64 (5.6.3-1) ... 303s Selecting previously unselected package pkgconf-bin. 303s Preparing to unpack .../177-pkgconf-bin_1.8.1-4_amd64.deb ... 303s Unpacking pkgconf-bin (1.8.1-4) ... 303s Selecting previously unselected package pkgconf:amd64. 303s Preparing to unpack .../178-pkgconf_1.8.1-4_amd64.deb ... 303s Unpacking pkgconf:amd64 (1.8.1-4) ... 303s Selecting previously unselected package libtirpc-dev:amd64. 303s Preparing to unpack .../179-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 303s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 303s Selecting previously unselected package r-base-dev. 303s Preparing to unpack .../180-r-base-dev_4.4.2-1build1_all.deb ... 303s Unpacking r-base-dev (4.4.2-1build1) ... 303s Selecting previously unselected package pkg-r-autopkgtest. 303s Preparing to unpack .../181-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 303s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 303s Selecting previously unselected package r-cran-abind. 303s Preparing to unpack .../182-r-cran-abind_1.4-8-1_all.deb ... 303s Unpacking r-cran-abind (1.4-8-1) ... 303s Selecting previously unselected package r-cran-cli. 303s Preparing to unpack .../183-r-cran-cli_3.6.3-1_amd64.deb ... 303s Unpacking r-cran-cli (3.6.3-1) ... 303s Selecting previously unselected package r-cran-generics. 303s Preparing to unpack .../184-r-cran-generics_0.1.3-1_all.deb ... 303s Unpacking r-cran-generics (0.1.3-1) ... 303s Selecting previously unselected package r-cran-glue. 303s Preparing to unpack .../185-r-cran-glue_1.8.0-1_amd64.deb ... 303s Unpacking r-cran-glue (1.8.0-1) ... 303s Selecting previously unselected package r-cran-rlang. 303s Preparing to unpack .../186-r-cran-rlang_1.1.5-1_amd64.deb ... 303s Unpacking r-cran-rlang (1.1.5-1) ... 303s Selecting previously unselected package r-cran-lifecycle. 303s Preparing to unpack .../187-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 303s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 303s Selecting previously unselected package r-cran-magrittr. 303s Preparing to unpack .../188-r-cran-magrittr_2.0.3-1_amd64.deb ... 303s Unpacking r-cran-magrittr (2.0.3-1) ... 303s Selecting previously unselected package r-cran-utf8. 303s Preparing to unpack .../189-r-cran-utf8_1.2.4-1_amd64.deb ... 303s Unpacking r-cran-utf8 (1.2.4-1) ... 303s Selecting previously unselected package r-cran-vctrs. 303s Preparing to unpack .../190-r-cran-vctrs_0.6.5-1_amd64.deb ... 303s Unpacking r-cran-vctrs (0.6.5-1) ... 303s Selecting previously unselected package r-cran-pillar. 303s Preparing to unpack .../191-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 303s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 303s Selecting previously unselected package r-cran-r6. 303s Preparing to unpack .../192-r-cran-r6_2.5.1-1_all.deb ... 303s Unpacking r-cran-r6 (2.5.1-1) ... 303s Selecting previously unselected package r-cran-fansi. 303s Preparing to unpack .../193-r-cran-fansi_1.0.5-1_amd64.deb ... 303s Unpacking r-cran-fansi (1.0.5-1) ... 303s Selecting previously unselected package r-cran-pkgconfig. 303s Preparing to unpack .../194-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 303s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 303s Selecting previously unselected package r-cran-tibble. 303s Preparing to unpack .../195-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 303s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 303s Selecting previously unselected package r-cran-withr. 303s Preparing to unpack .../196-r-cran-withr_3.0.2+dfsg-1_all.deb ... 303s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 303s Selecting previously unselected package r-cran-tidyselect. 303s Preparing to unpack .../197-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 303s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 304s Selecting previously unselected package r-cran-dplyr. 304s Preparing to unpack .../198-r-cran-dplyr_1.1.4-4_amd64.deb ... 304s Unpacking r-cran-dplyr (1.1.4-4) ... 304s Selecting previously unselected package r-cran-purrr. 304s Preparing to unpack .../199-r-cran-purrr_1.0.2-1_amd64.deb ... 304s Unpacking r-cran-purrr (1.0.2-1) ... 304s Selecting previously unselected package r-cran-mass. 304s Preparing to unpack .../200-r-cran-mass_7.3-64-1_amd64.deb ... 304s Unpacking r-cran-mass (7.3-64-1) ... 304s Selecting previously unselected package r-cran-class. 304s Preparing to unpack .../201-r-cran-class_7.3-23-1_amd64.deb ... 304s Unpacking r-cran-class (7.3-23-1) ... 304s Selecting previously unselected package r-cran-proxy. 304s Preparing to unpack .../202-r-cran-proxy_0.4-27-1_amd64.deb ... 304s Unpacking r-cran-proxy (0.4-27-1) ... 304s Selecting previously unselected package r-cran-e1071. 304s Preparing to unpack .../203-r-cran-e1071_1.7-16-1_amd64.deb ... 304s Unpacking r-cran-e1071 (1.7-16-1) ... 304s Selecting previously unselected package r-cran-kernsmooth. 304s Preparing to unpack .../204-r-cran-kernsmooth_2.23-26-1_amd64.deb ... 304s Unpacking r-cran-kernsmooth (2.23-26-1) ... 304s Selecting previously unselected package r-cran-classint. 304s Preparing to unpack .../205-r-cran-classint_0.4-11+dfsg-1_amd64.deb ... 304s Unpacking r-cran-classint (0.4-11+dfsg-1) ... 304s Selecting previously unselected package r-cran-dbi. 304s Preparing to unpack .../206-r-cran-dbi_1.2.3-1_all.deb ... 304s Unpacking r-cran-dbi (1.2.3-1) ... 304s Selecting previously unselected package r-cran-pkgkitten. 304s Preparing to unpack .../207-r-cran-pkgkitten_0.2.4-1_all.deb ... 304s Unpacking r-cran-pkgkitten (0.2.4-1) ... 304s Selecting previously unselected package r-cran-rcpp. 304s Preparing to unpack .../208-r-cran-rcpp_1.0.14-1_amd64.deb ... 304s Unpacking r-cran-rcpp (1.0.14-1) ... 304s Selecting previously unselected package r-cran-wk. 304s Preparing to unpack .../209-r-cran-wk_0.9.4-1_amd64.deb ... 304s Unpacking r-cran-wk (0.9.4-1) ... 304s Selecting previously unselected package r-cran-s2. 304s Preparing to unpack .../210-r-cran-s2_1.1.7-1_amd64.deb ... 304s Unpacking r-cran-s2 (1.1.7-1) ... 304s Selecting previously unselected package r-cran-units. 304s Preparing to unpack .../211-r-cran-units_0.8-5+dfsg-1_amd64.deb ... 304s Unpacking r-cran-units (0.8-5+dfsg-1) ... 304s Selecting previously unselected package r-cran-sf. 304s Preparing to unpack .../212-r-cran-sf_1.0-19+dfsg-1_amd64.deb ... 304s Unpacking r-cran-sf (1.0-19+dfsg-1) ... 304s Selecting previously unselected package r-cran-areal. 304s Preparing to unpack .../213-r-cran-areal_0.1.8+dfsg-2_all.deb ... 304s Unpacking r-cran-areal (0.1.8+dfsg-2) ... 304s Selecting previously unselected package r-cran-sys. 304s Preparing to unpack .../214-r-cran-sys_3.4.3-1_amd64.deb ... 304s Unpacking r-cran-sys (3.4.3-1) ... 304s Selecting previously unselected package r-cran-askpass. 304s Preparing to unpack .../215-r-cran-askpass_1.2.1-1_amd64.deb ... 304s Unpacking r-cran-askpass (1.2.1-1) ... 305s Selecting previously unselected package r-cran-base64enc. 305s Preparing to unpack .../216-r-cran-base64enc_0.1-3-3_amd64.deb ... 305s Unpacking r-cran-base64enc (0.1-3-3) ... 305s Selecting previously unselected package r-cran-bdsmatrix. 305s Preparing to unpack .../217-r-cran-bdsmatrix_1.3-7-1_amd64.deb ... 305s Unpacking r-cran-bdsmatrix (1.3-7-1) ... 305s Selecting previously unselected package r-cran-brio. 305s Preparing to unpack .../218-r-cran-brio_1.1.5-1_amd64.deb ... 305s Unpacking r-cran-brio (1.1.5-1) ... 305s Selecting previously unselected package r-cran-fastmap. 305s Preparing to unpack .../219-r-cran-fastmap_1.2.0-1_amd64.deb ... 305s Unpacking r-cran-fastmap (1.2.0-1) ... 305s Selecting previously unselected package r-cran-cachem. 305s Preparing to unpack .../220-r-cran-cachem_1.1.0-1_amd64.deb ... 305s Unpacking r-cran-cachem (1.1.0-1) ... 305s Selecting previously unselected package r-cran-digest. 305s Preparing to unpack .../221-r-cran-digest_0.6.37-1_amd64.deb ... 305s Unpacking r-cran-digest (0.6.37-1) ... 305s Selecting previously unselected package r-cran-htmltools. 305s Preparing to unpack .../222-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 305s Unpacking r-cran-htmltools (0.5.8.1-1) ... 305s Selecting previously unselected package r-cran-jquerylib. 305s Preparing to unpack .../223-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 305s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 305s Selecting previously unselected package r-cran-jsonlite. 305s Preparing to unpack .../224-r-cran-jsonlite_1.8.9+dfsg-1_amd64.deb ... 305s Unpacking r-cran-jsonlite (1.8.9+dfsg-1) ... 305s Selecting previously unselected package r-cran-memoise. 306s Preparing to unpack .../225-r-cran-memoise_2.0.1-1_all.deb ... 306s Unpacking r-cran-memoise (2.0.1-1) ... 306s Selecting previously unselected package r-cran-mime. 306s Preparing to unpack .../226-r-cran-mime_0.12-2_amd64.deb ... 306s Unpacking r-cran-mime (0.12-2) ... 306s Selecting previously unselected package r-cran-fs. 306s Preparing to unpack .../227-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 306s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 306s Selecting previously unselected package r-cran-rappdirs. 306s Preparing to unpack .../228-r-cran-rappdirs_0.3.3-1_amd64.deb ... 306s Unpacking r-cran-rappdirs (0.3.3-1) ... 306s Selecting previously unselected package r-cran-sass. 306s Preparing to unpack .../229-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 306s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 306s Selecting previously unselected package r-cran-bslib. 306s Preparing to unpack .../230-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 306s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 306s Selecting previously unselected package r-cran-cairo. 306s Preparing to unpack .../231-r-cran-cairo_1.6-2-1_amd64.deb ... 306s Unpacking r-cran-cairo (1.6-2-1) ... 306s Selecting previously unselected package r-cran-ps. 306s Preparing to unpack .../232-r-cran-ps_1.8.1-1_amd64.deb ... 306s Unpacking r-cran-ps (1.8.1-1) ... 306s Selecting previously unselected package r-cran-processx. 306s Preparing to unpack .../233-r-cran-processx_3.8.5-1_amd64.deb ... 306s Unpacking r-cran-processx (3.8.5-1) ... 306s Selecting previously unselected package r-cran-callr. 306s Preparing to unpack .../234-r-cran-callr_3.7.6-1_all.deb ... 306s Unpacking r-cran-callr (3.7.6-1) ... 306s Selecting previously unselected package r-cran-cluster. 306s Preparing to unpack .../235-r-cran-cluster_2.1.8-1_amd64.deb ... 306s Unpacking r-cran-cluster (2.1.8-1) ... 306s Selecting previously unselected package r-cran-clue. 306s Preparing to unpack .../236-r-cran-clue_0.3-66-1_amd64.deb ... 306s Unpacking r-cran-clue (0.3-66-1) ... 306s Selecting previously unselected package r-cran-codetools. 306s Preparing to unpack .../237-r-cran-codetools_0.2-20-1_all.deb ... 306s Unpacking r-cran-codetools (0.2-20-1) ... 306s Selecting previously unselected package r-cran-collapse. 306s Preparing to unpack .../238-r-cran-collapse_2.0.19-1_amd64.deb ... 306s Unpacking r-cran-collapse (2.0.19-1) ... 306s Selecting previously unselected package r-cran-colorspace. 306s Preparing to unpack .../239-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ... 306s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 306s Selecting previously unselected package r-cran-commonmark. 306s Preparing to unpack .../240-r-cran-commonmark_1.9.2-2_amd64.deb ... 306s Unpacking r-cran-commonmark (1.9.2-2) ... 306s Selecting previously unselected package r-cran-lazyeval. 306s Preparing to unpack .../241-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 306s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 306s Selecting previously unselected package r-cran-rex. 306s Preparing to unpack .../242-r-cran-rex_1.2.1-1_all.deb ... 306s Unpacking r-cran-rex (1.2.1-1) ... 306s Selecting previously unselected package r-cran-curl. 306s Preparing to unpack .../243-r-cran-curl_6.1.0+dfsg-1_amd64.deb ... 306s Unpacking r-cran-curl (6.1.0+dfsg-1) ... 306s Selecting previously unselected package r-cran-openssl. 306s Preparing to unpack .../244-r-cran-openssl_2.2.0+dfsg-1_amd64.deb ... 306s Unpacking r-cran-openssl (2.2.0+dfsg-1) ... 306s Selecting previously unselected package r-cran-httr. 306s Preparing to unpack .../245-r-cran-httr_1.4.7+dfsg-1_all.deb ... 306s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 306s Selecting previously unselected package r-cran-crayon. 306s Preparing to unpack .../246-r-cran-crayon_1.5.3-1_all.deb ... 306s Unpacking r-cran-crayon (1.5.3-1) ... 306s Selecting previously unselected package r-cran-yaml. 306s Preparing to unpack .../247-r-cran-yaml_2.3.10-1_amd64.deb ... 306s Unpacking r-cran-yaml (2.3.10-1) ... 306s Selecting previously unselected package r-cran-covr. 306s Preparing to unpack .../248-r-cran-covr_3.6.4+dfsg-1_amd64.deb ... 306s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 306s Selecting previously unselected package r-cran-cpp11. 306s Preparing to unpack .../249-r-cran-cpp11_0.5.1-1_all.deb ... 306s Unpacking r-cran-cpp11 (0.5.1-1) ... 306s Selecting previously unselected package r-cran-deldir. 306s Preparing to unpack .../250-r-cran-deldir_2.0-4-1build1_amd64.deb ... 306s Unpacking r-cran-deldir (2.0-4-1build1) ... 306s Selecting previously unselected package r-cran-desc. 306s Preparing to unpack .../251-r-cran-desc_1.4.3-1_all.deb ... 306s Unpacking r-cran-desc (1.4.3-1) ... 306s Selecting previously unselected package r-cran-diffobj. 306s Preparing to unpack .../252-r-cran-diffobj_0.3.5-1_amd64.deb ... 306s Unpacking r-cran-diffobj (0.3.5-1) ... 306s Selecting previously unselected package r-cran-evaluate. 306s Preparing to unpack .../253-r-cran-evaluate_1.0.3-1_all.deb ... 306s Unpacking r-cran-evaluate (1.0.3-1) ... 306s Selecting previously unselected package r-cran-farver. 306s Preparing to unpack .../254-r-cran-farver_2.1.2-1_amd64.deb ... 306s Unpacking r-cran-farver (2.1.2-1) ... 307s Selecting previously unselected package r-cran-fnn. 307s Preparing to unpack .../255-r-cran-fnn_1.1.4.1-1_amd64.deb ... 307s Unpacking r-cran-fnn (1.1.4.1-1) ... 307s Selecting previously unselected package r-cran-fontawesome. 307s Preparing to unpack .../256-r-cran-fontawesome_0.5.3-1_all.deb ... 307s Unpacking r-cran-fontawesome (0.5.3-1) ... 307s Selecting previously unselected package r-cran-formula. 307s Preparing to unpack .../257-r-cran-formula_1.2-5-1_all.deb ... 307s Unpacking r-cran-formula (1.2-5-1) ... 307s Selecting previously unselected package r-cran-globals. 307s Preparing to unpack .../258-r-cran-globals_0.16.3-1_all.deb ... 307s Unpacking r-cran-globals (0.16.3-1) ... 307s Selecting previously unselected package r-cran-listenv. 307s Preparing to unpack .../259-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 307s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 307s Selecting previously unselected package r-cran-parallelly. 307s Preparing to unpack .../260-r-cran-parallelly_1.41.0-1_amd64.deb ... 307s Unpacking r-cran-parallelly (1.41.0-1) ... 307s Selecting previously unselected package r-cran-future. 307s Preparing to unpack .../261-r-cran-future_1.34.0+dfsg-1_all.deb ... 307s Unpacking r-cran-future (1.34.0+dfsg-1) ... 307s Selecting previously unselected package r-cran-future.apply. 307s Preparing to unpack .../262-r-cran-future.apply_1.11.3+dfsg-1_all.deb ... 307s Unpacking r-cran-future.apply (1.11.3+dfsg-1) ... 307s Selecting previously unselected package r-cran-gtable. 307s Preparing to unpack .../263-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 307s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 307s Selecting previously unselected package r-cran-isoband. 307s Preparing to unpack .../264-r-cran-isoband_0.2.7-1_amd64.deb ... 307s Unpacking r-cran-isoband (0.2.7-1) ... 307s Selecting previously unselected package r-cran-lattice. 307s Preparing to unpack .../265-r-cran-lattice_0.22-6-1_amd64.deb ... 307s Unpacking r-cran-lattice (0.22-6-1) ... 307s Selecting previously unselected package r-cran-nlme. 307s Preparing to unpack .../266-r-cran-nlme_3.1.167-1_amd64.deb ... 307s Unpacking r-cran-nlme (3.1.167-1) ... 307s Selecting previously unselected package r-cran-matrix. 307s Preparing to unpack .../267-r-cran-matrix_1.7-2-1_amd64.deb ... 307s Unpacking r-cran-matrix (1.7-2-1) ... 307s Selecting previously unselected package r-cran-mgcv. 307s Preparing to unpack .../268-r-cran-mgcv_1.9-1-1_amd64.deb ... 307s Unpacking r-cran-mgcv (1.9-1-1) ... 307s Selecting previously unselected package r-cran-labeling. 307s Preparing to unpack .../269-r-cran-labeling_0.4.3-1_all.deb ... 307s Unpacking r-cran-labeling (0.4.3-1) ... 307s Selecting previously unselected package r-cran-munsell. 307s Preparing to unpack .../270-r-cran-munsell_0.5.1-1_all.deb ... 307s Unpacking r-cran-munsell (0.5.1-1) ... 307s Selecting previously unselected package r-cran-rcolorbrewer. 307s Preparing to unpack .../271-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 307s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 307s Selecting previously unselected package r-cran-viridislite. 307s Preparing to unpack .../272-r-cran-viridislite_0.4.2-2_all.deb ... 307s Unpacking r-cran-viridislite (0.4.2-2) ... 307s Selecting previously unselected package r-cran-scales. 307s Preparing to unpack .../273-r-cran-scales_1.3.0-1_all.deb ... 307s Unpacking r-cran-scales (1.3.0-1) ... 307s Selecting previously unselected package r-cran-ggplot2. 307s Preparing to unpack .../274-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 307s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 308s Selecting previously unselected package r-cran-tweenr. 308s Preparing to unpack .../275-r-cran-tweenr_2.0.3-1_amd64.deb ... 308s Unpacking r-cran-tweenr (2.0.3-1) ... 308s Selecting previously unselected package r-cran-polyclip. 308s Preparing to unpack .../276-r-cran-polyclip_1.10-7-1_amd64.deb ... 308s Unpacking r-cran-polyclip (1.10-7-1) ... 308s Selecting previously unselected package r-cran-systemfonts. 308s Preparing to unpack .../277-r-cran-systemfonts_1.2.1-1_amd64.deb ... 308s Unpacking r-cran-systemfonts (1.2.1-1) ... 308s Selecting previously unselected package r-cran-rcppeigen. 308s Preparing to unpack .../278-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 308s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 308s Selecting previously unselected package r-cran-ggforce. 308s Preparing to unpack .../279-r-cran-ggforce_0.4.2-1_amd64.deb ... 308s Unpacking r-cran-ggforce (0.4.2-1) ... 308s Selecting previously unselected package r-cran-stringi. 308s Preparing to unpack .../280-r-cran-stringi_1.8.4-1build1_amd64.deb ... 308s Unpacking r-cran-stringi (1.8.4-1build1) ... 308s Selecting previously unselected package r-cran-stringr. 308s Preparing to unpack .../281-r-cran-stringr_1.5.1-1_all.deb ... 308s Unpacking r-cran-stringr (1.5.1-1) ... 308s Selecting previously unselected package r-cran-ggthemes. 308s Preparing to unpack .../282-r-cran-ggthemes_5.1.0-1_all.deb ... 308s Unpacking r-cran-ggthemes (5.1.0-1) ... 308s Selecting previously unselected package r-cran-goftest. 308s Preparing to unpack .../283-r-cran-goftest_1.2-3-1_amd64.deb ... 308s Unpacking r-cran-goftest (1.2-3-1) ... 308s Selecting previously unselected package r-cran-gridextra. 308s Preparing to unpack .../284-r-cran-gridextra_2.3-3build1_all.deb ... 308s Unpacking r-cran-gridextra (2.3-3build1) ... 308s Selecting previously unselected package r-cran-xfun. 308s Preparing to unpack .../285-r-cran-xfun_0.50+dfsg-1_amd64.deb ... 308s Unpacking r-cran-xfun (0.50+dfsg-1) ... 308s Selecting previously unselected package r-cran-highr. 308s Preparing to unpack .../286-r-cran-highr_0.11+dfsg-1_all.deb ... 308s Unpacking r-cran-highr (0.11+dfsg-1) ... 308s Selecting previously unselected package r-cran-later. 308s Preparing to unpack .../287-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 308s Unpacking r-cran-later (1.4.1+dfsg-1) ... 308s Selecting previously unselected package r-cran-promises. 308s Preparing to unpack .../288-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 308s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 308s Selecting previously unselected package r-cran-httpuv. 308s Preparing to unpack .../289-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 308s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 308s Selecting previously unselected package r-cran-intervals. 308s Preparing to unpack .../290-r-cran-intervals_0.15.5-1_amd64.deb ... 308s Unpacking r-cran-intervals (0.15.5-1) ... 308s Selecting previously unselected package libjs-mathjax. 308s Preparing to unpack .../291-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 308s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 309s Selecting previously unselected package r-cran-knitr. 309s Preparing to unpack .../292-r-cran-knitr_1.49+dfsg-1_all.deb ... 309s Unpacking r-cran-knitr (1.49+dfsg-1) ... 309s Selecting previously unselected package r-cran-zoo. 309s Preparing to unpack .../293-r-cran-zoo_1.8-12-2_amd64.deb ... 309s Unpacking r-cran-zoo (1.8-12-2) ... 309s Selecting previously unselected package r-cran-lmtest. 309s Preparing to unpack .../294-r-cran-lmtest_0.9.40-1_amd64.deb ... 309s Unpacking r-cran-lmtest (0.9.40-1) ... 309s Selecting previously unselected package r-cran-lwgeom. 309s Preparing to unpack .../295-r-cran-lwgeom_0.2-14-1_amd64.deb ... 309s Unpacking r-cran-lwgeom (0.2-14-1) ... 309s Selecting previously unselected package r-cran-maps. 309s Preparing to unpack .../296-r-cran-maps_3.4.2-1_amd64.deb ... 309s Unpacking r-cran-maps (3.4.2-1) ... 310s Selecting previously unselected package r-cran-mapdata. 310s Preparing to unpack .../297-r-cran-mapdata_2.3.1-1_amd64.deb ... 310s Unpacking r-cran-mapdata (2.3.1-1) ... 310s Selecting previously unselected package r-cran-misctools. 310s Preparing to unpack .../298-r-cran-misctools_0.6-28-1_all.deb ... 310s Unpacking r-cran-misctools (0.6-28-1) ... 310s Selecting previously unselected package r-cran-sandwich. 310s Preparing to unpack .../299-r-cran-sandwich_3.1-1-1_all.deb ... 310s Unpacking r-cran-sandwich (3.1-1-1) ... 310s Selecting previously unselected package r-cran-maxlik. 310s Preparing to unpack .../300-r-cran-maxlik_1.5-2.1-1_all.deb ... 310s Unpacking r-cran-maxlik (1.5-2.1-1) ... 310s Selecting previously unselected package r-cran-rnetcdf. 310s Preparing to unpack .../301-r-cran-rnetcdf_2.9-1-1build2_amd64.deb ... 310s Unpacking r-cran-rnetcdf (2.9-1-1build2) ... 310s Selecting previously unselected package r-cran-tidyr. 310s Preparing to unpack .../302-r-cran-tidyr_1.3.1-1_amd64.deb ... 310s Unpacking r-cran-tidyr (1.3.1-1) ... 310s Selecting previously unselected package r-cran-ncmeta. 310s Preparing to unpack .../303-r-cran-ncmeta_0.3.6-1_all.deb ... 310s Unpacking r-cran-ncmeta (0.3.6-1) ... 310s Selecting previously unselected package r-cran-stars. 310s Preparing to unpack .../304-r-cran-stars_0.6-7-1_all.deb ... 310s Unpacking r-cran-stars (0.6-7-1) ... 310s Selecting previously unselected package r-cran-ncdfgeom. 310s Preparing to unpack .../305-r-cran-ncdfgeom_1.1.6+dfsg-1_all.deb ... 310s Unpacking r-cran-ncdfgeom (1.1.6+dfsg-1) ... 310s Selecting previously unselected package r-cran-pbapply. 310s Preparing to unpack .../306-r-cran-pbapply_1.7-2-1_all.deb ... 310s Unpacking r-cran-pbapply (1.7-2-1) ... 311s Selecting previously unselected package r-cran-pcict. 311s Preparing to unpack .../307-r-cran-pcict_0.5-4.4-1_amd64.deb ... 311s Unpacking r-cran-pcict (0.5-4.4-1) ... 311s Selecting previously unselected package r-cran-pkgbuild. 311s Preparing to unpack .../308-r-cran-pkgbuild_1.4.6-1_all.deb ... 311s Unpacking r-cran-pkgbuild (1.4.6-1) ... 311s Selecting previously unselected package r-cran-rprojroot. 311s Preparing to unpack .../309-r-cran-rprojroot_2.0.4-2_all.deb ... 311s Unpacking r-cran-rprojroot (2.0.4-2) ... 311s Selecting previously unselected package r-cran-pkgload. 311s Preparing to unpack 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unselected package r-cran-sp. 311s Preparing to unpack .../316-r-cran-sp_1%3a2.1-4+dfsg-1_amd64.deb ... 311s Unpacking r-cran-sp (1:2.1-4+dfsg-1) ... 311s Selecting previously unselected package r-cran-terra. 311s Preparing to unpack .../317-r-cran-terra_1.8-10-1_amd64.deb ... 311s Unpacking r-cran-terra (1.8-10-1) ... 311s Selecting previously unselected package r-cran-raster. 311s Preparing to unpack .../318-r-cran-raster_3.6-31-1_amd64.deb ... 311s Unpacking r-cran-raster (3.6-31-1) ... 311s Selecting previously unselected package r-cran-tinytex. 311s Preparing to unpack .../319-r-cran-tinytex_0.54-1_all.deb ... 311s Unpacking r-cran-tinytex (0.54-1) ... 311s Selecting previously unselected package libjs-modernizr. 311s Preparing to unpack .../320-libjs-modernizr_3.13.0-0.1_all.deb ... 311s Unpacking libjs-modernizr (3.13.0-0.1) ... 311s Selecting previously unselected package r-cran-xtable. 311s Preparing to unpack .../321-r-cran-xtable_1%3a1.8-4-2_all.deb ... 311s Unpacking 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because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 317s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 317s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 317s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 317s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 317s Setting up r-cran-future.apply (1.11.3+dfsg-1) ... 317s Setting up r-cran-systemfonts (1.2.1-1) ... 317s Setting up r-cran-httr (1.4.7+dfsg-1) ... 317s Setting up r-cran-gridextra (2.3-3build1) ... 317s Setting up r-cran-scales (1.3.0-1) ... 317s Setting up r-cran-memoise (2.0.1-1) ... 317s Setting up r-cran-covr (3.6.4+dfsg-1) ... 317s Setting up r-cran-promises (1.3.2+dfsg-1) ... 317s Setting up r-cran-purrr (1.0.2-1) ... 317s Setting up r-cran-e1071 (1.7-16-1) ... 317s Setting up r-cran-spatstat.data (3.1-4-1) ... 317s 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man-db (2.13.0-1) ... 322s autopkgtest [19:32:16]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 322s autopkgtest [19:32:16]: test pkg-r-autopkgtest: [----------------------- 322s Test: Try to load the R library stars 322s 322s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 322s Copyright (C) 2024 The R Foundation for Statistical Computing 322s Platform: x86_64-pc-linux-gnu 322s 322s R is free software and comes with ABSOLUTELY NO WARRANTY. 322s You are welcome to redistribute it under certain conditions. 322s Type 'license()' or 'licence()' for distribution details. 322s 322s R is a collaborative project with many contributors. 322s Type 'contributors()' for more information and 322s 'citation()' on how to cite R or R packages in publications. 322s 322s Type 'demo()' for some demos, 'help()' for on-line help, or 322s 'help.start()' for an HTML browser interface to help. 322s Type 'q()' to quit R. 322s 322s > library('stars') 322s Loading required package: abind 322s Loading required package: sf 323s Linking to GEOS 3.13.0, GDAL 3.10.1, PROJ 9.5.1; sf_use_s2() is TRUE 323s > 323s > 323s Other tests are currently unsupported! 323s They will be progressively added. 323s autopkgtest [19:32:17]: test pkg-r-autopkgtest: -----------------------] 323s pkg-r-autopkgtest PASS 323s autopkgtest [19:32:17]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 323s autopkgtest [19:32:17]: @@@@@@@@@@@@@@@@@@@@ summary 323s run-unit-test PASS 323s pkg-r-autopkgtest PASS 339s nova [W] Skipping flock for amd64 339s Creating nova instance adt-plucky-amd64-r-cran-stars-20250203-192653-juju-7f2275-prod-proposed-migration-environment-15-7b9ebd13-252c-4af9-bafc-7b6295ea7a67 from image adt/ubuntu-plucky-amd64-server-20250203.img (UUID 15dc8987-472a-4c3f-84bb-7526fd9e1ef2)... 339s nova [W] Timed out waiting for 19eb100a-9981-4996-8642-9d33ce7be845 to get deleted. 339s nova [W] Skipping flock for amd64 339s Creating nova instance adt-plucky-amd64-r-cran-stars-20250203-192653-juju-7f2275-prod-proposed-migration-environment-15-7b9ebd13-252c-4af9-bafc-7b6295ea7a67 from image adt/ubuntu-plucky-amd64-server-20250203.img (UUID 15dc8987-472a-4c3f-84bb-7526fd9e1ef2)... 339s nova [W] Timed out waiting for 4a78ab9b-0678-4995-b113-9d609c960dfe to get deleted.