0s autopkgtest [23:48:35]: starting date and time: 2025-03-15 23:48:35+0000
0s autopkgtest [23:48:35]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
0s autopkgtest [23:48:35]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.7t9p4jj7/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-spatstat.linnet --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-28.secgroup --name adt-plucky-amd64-r-cran-spatstat.linnet-20250315-234835-juju-7f2275-prod-proposed-migration-environment-20-dbb22161-f227-4502-91a9-d417da9fdaa9 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
54s autopkgtest [23:49:29]: testbed dpkg architecture: amd64
54s autopkgtest [23:49:29]: testbed apt version: 2.9.31ubuntu1
55s autopkgtest [23:49:30]: @@@@@@@@@@@@@@@@@@@@ test bed setup
55s autopkgtest [23:49:30]: testbed release detected to be: None
56s autopkgtest [23:49:31]: updating testbed package index (apt update)
56s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
56s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
56s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
56s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
56s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB]
57s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB]
57s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB]
57s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB]
57s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB]
57s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B]
57s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B]
57s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB]
57s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB]
57s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB]
57s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B]
57s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB]
57s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B]
57s Fetched 1265 kB in 1s (1296 kB/s)
58s Reading package lists...
58s Reading package lists...
59s Building dependency tree...
59s Reading state information...
59s Calculating upgrade...
59s Calculating upgrade...
60s The following package was automatically installed and is no longer required:
60s libnl-genl-3-200
60s Use 'sudo apt autoremove' to remove it.
60s The following NEW packages will be installed:
60s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10
60s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic
60s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic
60s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids
60s The following packages will be upgraded:
60s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu
60s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base
60s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools
60s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0
60s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1
60s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0
60s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1
60s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64
60s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6
60s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200
60s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib
60s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2
60s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0
60s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2
60s linux-firmware linux-generic linux-headers-generic linux-headers-virtual
60s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common
60s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term
60s parted pci.ids pciutils pinentry-curses python-apt-common python3
60s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi
60s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal
60s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13
60s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd
60s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd
60s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail
60s xz-utils
60s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded.
60s Need to get 829 MB of archives.
60s After this operation, 325 MB of additional disk space will be used.
60s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB]
60s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB]
60s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB]
60s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB]
61s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB]
61s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB]
61s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB]
61s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB]
61s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB]
61s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB]
61s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB]
61s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB]
61s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB]
61s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB]
61s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB]
61s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB]
61s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB]
61s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB]
61s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB]
61s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB]
61s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB]
61s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB]
61s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB]
61s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB]
61s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB]
61s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB]
61s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B]
61s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB]
61s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB]
61s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB]
61s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB]
61s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB]
61s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB]
62s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB]
62s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB]
62s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB]
62s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB]
62s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB]
62s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB]
62s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB]
62s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB]
62s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB]
62s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB]
62s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB]
62s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB]
62s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB]
62s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB]
62s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB]
62s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB]
62s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB]
62s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B]
62s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB]
62s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB]
62s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB]
62s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB]
62s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB]
62s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB]
62s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B]
62s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB]
62s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB]
62s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB]
62s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB]
62s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB]
62s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB]
62s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB]
62s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB]
62s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB]
62s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB]
62s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB]
62s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB]
62s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB]
62s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB]
62s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB]
62s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB]
62s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB]
62s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB]
62s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB]
62s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB]
62s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB]
63s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB]
63s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB]
63s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB]
63s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB]
63s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB]
63s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB]
63s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB]
63s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB]
63s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB]
63s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB]
63s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB]
63s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB]
63s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB]
63s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B]
63s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB]
63s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB]
63s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB]
63s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB]
63s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
63s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB]
63s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB]
63s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB]
63s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB]
63s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB]
63s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB]
64s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB]
64s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB]
64s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB]
64s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB]
64s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB]
95s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B]
95s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB]
95s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB]
95s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB]
95s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB]
95s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB]
95s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB]
95s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB]
97s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB]
98s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB]
105s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B]
105s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB]
105s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B]
105s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB]
105s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B]
105s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB]
106s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB]
106s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB]
106s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB]
107s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB]
107s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B]
107s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB]
107s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB]
107s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB]
107s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB]
107s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB]
107s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB]
107s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B]
107s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB]
107s Preconfiguring packages ...
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108s Stopping some services possibly affected by the upgrade (will be restarted later):
108s cron: stopping...done.
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109s Checking for services that may need to be restarted...
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118s Preparing to unpack .../23-parted_3.6-5_amd64.deb ...
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118s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64'
118s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64'
118s Unpacking libparted2t64:amd64 (3.6-5) over (3.6-4build1) ...
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120s Preparing to unpack .../54-htop_3.4.0-2_amd64.deb ...
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123s Selecting previously unselected package libdebuginfod1t64:amd64.
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124s Unpacking libjemalloc2:amd64 (5.3.0-3) over (5.3.0-2build1) ...
124s Selecting previously unselected package linux-modules-6.14.0-10-generic.
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130s Preparing to unpack .../79-python3-rpds-py_0.21.0-2ubuntu2_amd64.deb ...
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130s Unpacking ubuntu-kernel-accessories (1.549) over (1.548) ...
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130s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ...
130s Preparing to unpack .../84-python3-bcrypt_4.2.0-2.1build1_amd64.deb ...
130s Unpacking python3-bcrypt (4.2.0-2.1build1) over (4.2.0-2.1) ...
130s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ...
130s Setting up media-types (13.0.0) ...
130s Installing new version of config file /etc/mime.types ...
130s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ...
130s Setting up ubuntu-kernel-accessories (1.549) ...
130s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ...
130s Setting up pci.ids (0.0~2025.03.09-1) ...
130s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ...
130s Setting up apt-utils (2.9.33) ...
130s Setting up libdebuginfod-common (0.192-4) ...
130s Setting up exfatprogs (1.2.8-1) ...
130s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ...
130s Setting up bpftool (7.6.0+6.14.0-10.10) ...
130s Setting up libestr0:amd64 (0.1.11-2) ...
130s Setting up libbrotli1:amd64 (1.1.0-2build4) ...
130s Setting up libsqlite3-0:amd64 (3.46.1-2) ...
130s Setting up dosfstools (4.2-1.2) ...
130s Setting up rsyslog (8.2412.0-2ubuntu2) ...
130s info: The user `syslog' is already a member of `adm'.
131s Setting up binutils-common:amd64 (2.44-3ubuntu1) ...
131s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ...
131s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ...
131s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ...
131s Setting up systemd (257.3-1ubuntu3) ...
132s [0;1;39m/usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring.[0m
132s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'.
132s [0;1;39m/usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring.[0m
132s Setting up libparted2t64:amd64 (3.6-5) ...
132s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64'
132s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64'
132s Setting up linux-headers-generic (6.14.0-10.10) ...
132s Setting up libjemalloc2:amd64 (5.3.0-3) ...
132s Setting up locales (2.41-1ubuntu1) ...
132s Installing new version of config file /etc/locale.alias ...
133s Generating locales (this might take a while)...
134s en_US.UTF-8... done
134s Generation complete.
134s Setting up libsframe1:amd64 (2.44-3ubuntu1) ...
134s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ...
134s Setting up apparmor (4.1.0~beta5-0ubuntu8) ...
134s Installing new version of config file /etc/apparmor.d/fusermount3 ...
134s Installing new version of config file /etc/apparmor.d/lsusb ...
134s Installing new version of config file /etc/apparmor.d/openvpn ...
136s Reloading AppArmor profiles
137s Setting up libftdi1-2:amd64 (1.5-8build1) ...
137s Setting up libglib2.0-data (2.84.0-1) ...
137s Setting up systemd-cryptsetup (257.3-1ubuntu3) ...
137s Setting up libncurses6:amd64 (6.5+20250216-2) ...
137s Setting up strace (6.13+ds-1ubuntu1) ...
137s Setting up xz-utils (5.6.4-1) ...
137s Setting up systemd-timesyncd (257.3-1ubuntu3) ...
138s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it.
138s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ...
138s Setting up udev (257.3-1ubuntu3) ...
138s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ...
140s Setting up libncursesw6:amd64 (6.5+20250216-2) ...
140s Setting up libpci3:amd64 (1:3.13.0-2) ...
140s Setting up whiptail (0.52.24-4ubuntu2) ...
140s Setting up python-apt-common (2.9.9build1) ...
140s Setting up pnp.ids (0.393-3) ...
140s Setting up libnl-3-200:amd64 (3.7.0-1) ...
141s Setting up python3.13-minimal (3.13.2-2) ...
141s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ...
141s Setting up libbinutils:amd64 (2.44-3ubuntu1) ...
141s Setting up libc-dev-bin (2.41-1ubuntu1) ...
141s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ...
141s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ...
141s Setting up rsync (3.4.1+ds1-3) ...
142s rsync.service is a disabled or a static unit not running, not starting it.
142s Setting up python3.13-gdbm (3.13.2-2) ...
142s Setting up libpython3-stdlib:amd64 (3.13.2-2) ...
142s Setting up systemd-resolved (257.3-1ubuntu3) ...
143s Setting up initramfs-tools-bin (0.146ubuntu1) ...
143s Setting up ncurses-term (6.5+20250216-2) ...
143s Setting up libctf0:amd64 (2.44-3ubuntu1) ...
143s Setting up libpython3.13:amd64 (3.13.2-2) ...
143s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
143s Setting up libdebuginfod1t64:amd64 (0.192-4) ...
143s Setting up systemd-sysv (257.3-1ubuntu3) ...
143s Setting up linux-headers-virtual (6.14.0-10.10) ...
143s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ...
143s Setting up python3.13 (3.13.2-2) ...
143s Setting up htop (3.4.0-2) ...
143s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ...
146s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic
146s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic
146s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic
146s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic
146s Setting up parted (3.6-5) ...
146s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ...
146s Setting up python3 (3.13.2-2) ...
146s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ...
146s Setting up python3-markupsafe (2.1.5-1build4) ...
146s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ...
148s Setting up libnl-route-3-200:amd64 (3.7.0-1) ...
148s Setting up hwdata (0.393-3) ...
148s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
148s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ...
148s No schema files found: doing nothing.
148s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ...
148s Setting up linux-perf (6.14.0-10.10) ...
148s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ...
148s Setting up pciutils (1:3.13.0-2) ...
148s Setting up python3-rpds-py (0.21.0-2ubuntu2) ...
148s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ...
148s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ...
148s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ...
149s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ...
149s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ...
149s Setting up curl (8.12.1-3ubuntu1) ...
149s Setting up linux-image-virtual (6.14.0-10.10) ...
149s Setting up initramfs-tools-core (0.146ubuntu1) ...
149s Setting up linux-tools-common (6.14.0-10.10) ...
149s Setting up python3-systemd (235-1build6) ...
149s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ...
149s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ...
149s Setting up linux-image-generic (6.14.0-10.10) ...
149s Setting up python3-dbus (1.3.2-5build5) ...
149s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ...
149s Setting up initramfs-tools (0.146ubuntu1) ...
149s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ...
149s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ...
149s update-initramfs: deferring update (trigger activated)
149s Setting up linux-generic (6.14.0-10.10) ...
149s Setting up ubuntu-minimal (1.549) ...
149s Setting up python3-apt (2.9.9build1) ...
149s Setting up python3-bcrypt (4.2.0-2.1build1) ...
149s Setting up python3-yaml (6.0.2-1build2) ...
149s Setting up libfwupd3:amd64 (2.0.6-4) ...
149s Setting up python3-lazr.uri (1.0.6-6) ...
149s Setting up binutils (2.44-3ubuntu1) ...
149s Setting up ubuntu-standard (1.549) ...
149s Setting up cloud-init-base (25.1-0ubuntu3) ...
151s Setting up linux-virtual (6.14.0-10.10) ...
151s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ...
151s Setting up python3-gi (3.50.0-4build1) ...
151s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ...
151s Setting up fwupd (2.0.6-4) ...
151s fwupd-refresh.service is a disabled or a static unit not running, not starting it.
152s Setting up cloud-init (25.1-0ubuntu3) ...
152s Processing triggers for man-db (2.13.0-1) ...
153s Processing triggers for dbus (1.16.2-1ubuntu1) ...
153s Processing triggers for shared-mime-info (2.4-5) ...
153s Warning: program compiled against libxml 212 using older 209
154s Processing triggers for libc-bin (2.41-1ubuntu1) ...
154s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ...
154s /etc/kernel/postinst.d/initramfs-tools:
154s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic
154s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
164s /etc/kernel/postinst.d/zz-update-grub:
164s Sourcing file `/etc/default/grub'
164s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
164s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
164s Generating grub configuration file ...
164s Found linux image: /boot/vmlinuz-6.14.0-10-generic
164s Found initrd image: /boot/initrd.img-6.14.0-10-generic
165s Found linux image: /boot/vmlinuz-6.12.0-16-generic
165s Found initrd image: /boot/initrd.img-6.12.0-16-generic
165s Found linux image: /boot/vmlinuz-6.11.0-8-generic
165s Found initrd image: /boot/initrd.img-6.11.0-8-generic
165s Warning: os-prober will not be executed to detect other bootable partitions.
165s Systems on them will not be added to the GRUB boot configuration.
165s Check GRUB_DISABLE_OS_PROBER documentation entry.
165s Adding boot menu entry for UEFI Firmware Settings ...
165s done
165s Processing triggers for initramfs-tools (0.146ubuntu1) ...
165s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic
165s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
176s Reading package lists...
176s Building dependency tree...
176s Reading state information...
176s Solving dependencies...
177s The following packages will be REMOVED:
177s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib*
177s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
177s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic*
177s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic*
177s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic*
177s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8*
177s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16*
177s linux-tools-6.12.0-16-generic*
177s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded.
177s After this operation, 545 MB disk space will be freed.
177s (Reading database ...
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(Reading database ... 148643 files and directories currently installed.)
177s Removing libnl-genl-3-200:amd64 (3.7.0-1) ...
177s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
177s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
177s Removing libpython3.12t64:amd64 (3.12.9-1) ...
177s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ...
177s Removing libnsl2:amd64 (1.3.0-3build3) ...
177s Removing libpython3.12-minimal:amd64 (3.12.9-1) ...
177s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
178s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
180s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ...
180s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ...
182s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ...
182s /etc/kernel/postrm.d/initramfs-tools:
182s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic
183s /etc/kernel/postrm.d/zz-update-grub:
183s Sourcing file `/etc/default/grub'
183s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
183s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
183s Generating grub configuration file ...
183s Found linux image: /boot/vmlinuz-6.14.0-10-generic
183s Found initrd image: /boot/initrd.img-6.14.0-10-generic
183s Found linux image: /boot/vmlinuz-6.12.0-16-generic
183s Found initrd image: /boot/initrd.img-6.12.0-16-generic
183s Warning: os-prober will not be executed to detect other bootable partitions.
183s Systems on them will not be added to the GRUB boot configuration.
183s Check GRUB_DISABLE_OS_PROBER documentation entry.
183s Adding boot menu entry for UEFI Firmware Settings ...
183s done
183s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ...
183s W: Removing the running kernel
183s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic
183s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic
183s /etc/kernel/postrm.d/initramfs-tools:
183s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic
183s /etc/kernel/postrm.d/zz-update-grub:
183s Sourcing file `/etc/default/grub'
183s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
183s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
183s Generating grub configuration file ...
184s Found linux image: /boot/vmlinuz-6.14.0-10-generic
184s Found initrd image: /boot/initrd.img-6.14.0-10-generic
184s Warning: os-prober will not be executed to detect other bootable partitions.
184s Systems on them will not be added to the GRUB boot configuration.
184s Check GRUB_DISABLE_OS_PROBER documentation entry.
184s Adding boot menu entry for UEFI Firmware Settings ...
184s done
184s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
184s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ...
186s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ...
186s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ...
186s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ...
186s Processing triggers for libc-bin (2.41-1ubuntu1) ...
186s (Reading database ...
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(Reading database ... 76972 files and directories currently installed.)
186s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ...
186s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ...
186s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ...
186s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ...
186s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed
186s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
186s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ...
186s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty
186s autopkgtest [23:51:41]: upgrading testbed (apt dist-upgrade and autopurge)
187s Reading package lists...
187s Building dependency tree...
187s Reading state information...
187s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
187s Starting 2 pkgProblemResolver with broken count: 0
187s Done
188s Entering ResolveByKeep
188s
188s Calculating upgrade...
188s The following packages will be upgraded:
188s libc-bin libc-dev-bin libc6 libc6-dev locales
189s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
189s Need to get 10.5 MB of archives.
189s After this operation, 1024 B of additional disk space will be used.
189s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB]
189s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB]
189s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB]
189s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB]
189s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB]
190s Preconfiguring packages ...
190s Fetched 10.5 MB in 1s (7741 kB/s)
190s (Reading database ...
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(Reading database ... 100%
(Reading database ... 76968 files and directories currently installed.)
190s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ...
190s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
190s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ...
190s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
190s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ...
191s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
191s Setting up libc6:amd64 (2.41-1ubuntu2) ...
191s (Reading database ...
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191s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ...
191s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
191s Setting up libc-bin (2.41-1ubuntu2) ...
191s (Reading database ...
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(Reading database ... 76968 files and directories currently installed.)
191s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
191s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
191s Setting up locales (2.41-1ubuntu2) ...
192s Generating locales (this might take a while)...
193s en_US.UTF-8... done
193s Generation complete.
193s Setting up libc-dev-bin (2.41-1ubuntu2) ...
193s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ...
193s Processing triggers for man-db (2.13.0-1) ...
194s Processing triggers for systemd (257.3-1ubuntu3) ...
195s Reading package lists...
195s Building dependency tree...
195s Reading state information...
195s Starting pkgProblemResolver with broken count: 0
195s Starting 2 pkgProblemResolver with broken count: 0
195s Done
196s Solving dependencies...
196s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
196s autopkgtest [23:51:51]: rebooting testbed after setup commands that affected boot
219s autopkgtest [23:52:14]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025
222s autopkgtest [23:52:17]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-spatstat.linnet
224s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-spatstat.linnet 3.2-5-1 (dsc) [2484 B]
224s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-spatstat.linnet 3.2-5-1 (tar) [285 kB]
224s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-spatstat.linnet 3.2-5-1 (diff) [3576 B]
224s gpgv: Signature made Tue Feb 25 02:15:15 2025 UTC
224s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502
224s gpgv: issuer "plessy@debian.org"
224s gpgv: Can't check signature: No public key
224s dpkg-source: warning: cannot verify inline signature for ./r-cran-spatstat.linnet_3.2-5-1.dsc: no acceptable signature found
224s autopkgtest [23:52:19]: testing package r-cran-spatstat.linnet version 3.2-5-1
224s autopkgtest [23:52:19]: build not needed
227s autopkgtest [23:52:22]: test run-unit-test: preparing testbed
227s Reading package lists...
227s Building dependency tree...
227s Reading state information...
227s Starting pkgProblemResolver with broken count: 0
227s Starting 2 pkgProblemResolver with broken count: 0
227s Done
228s The following NEW packages will be installed:
228s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3
228s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libgfortran5 libgomp1
228s libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8
228s liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
228s libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6
228s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0
228s libxft2 libxrender1 libxss1 libxt6t64 r-base-core r-cran-abind r-cran-deldir
228s r-cran-goftest r-cran-lattice r-cran-locfit r-cran-matrix r-cran-mgcv
228s r-cran-nlme r-cran-polyclip r-cran-rpart r-cran-spatstat
228s r-cran-spatstat.data r-cran-spatstat.explore r-cran-spatstat.geom
228s r-cran-spatstat.linnet r-cran-spatstat.model r-cran-spatstat.random
228s r-cran-spatstat.sparse r-cran-spatstat.univar r-cran-spatstat.utils
228s r-cran-survival r-cran-tensor unzip x11-common xdg-utils zip
228s 0 upgraded, 66 newly installed, 0 to remove and 0 not upgraded.
228s Need to get 85.0 MB of archives.
228s After this operation, 141 MB of additional disk space will be used.
228s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
229s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
229s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB]
229s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB]
229s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB]
229s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB]
229s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB]
229s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB]
229s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B]
229s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB]
229s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB]
229s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB]
229s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB]
229s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB]
229s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB]
229s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB]
229s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB]
229s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
229s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB]
229s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB]
229s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
229s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB]
229s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB]
229s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB]
229s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB]
229s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB]
229s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB]
229s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB]
229s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB]
229s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB]
229s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB]
229s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB]
229s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB]
229s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB]
229s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB]
229s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB]
229s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB]
229s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B]
229s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB]
229s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB]
229s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB]
229s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB]
229s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
230s Get:44 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB]
231s Get:45 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB]
231s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB]
231s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-goftest amd64 1.2-3-1 [59.5 kB]
231s Get:48 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB]
231s Get:49 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-locfit amd64 1.5-9.12-1 [552 kB]
231s Get:50 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB]
232s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.167-1 [2320 kB]
232s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB]
232s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB]
232s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB]
233s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB]
233s Get:56 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.utils amd64 3.1-2-1 [383 kB]
233s Get:57 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.data all 3.1-4-1 [4047 kB]
233s Get:58 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.univar amd64 3.1-1-1build1 [310 kB]
233s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.geom amd64 3.3-5-1 [3959 kB]
233s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.random amd64 3.3-2-1 [1172 kB]
233s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tensor all 1.5-4 [15.7 kB]
233s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.sparse amd64 3.1-0-1 [221 kB]
233s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.explore amd64 3.3-4-1 [3347 kB]
233s Get:64 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.model amd64 3.3-4-1 [3397 kB]
234s Get:65 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.linnet amd64 3.2-5-1 [1509 kB]
234s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat amd64 3.3-1-1 [4121 kB]
234s Preconfiguring packages ...
234s Fetched 85.0 MB in 6s (14.3 MB/s)
234s Selecting previously unselected package fonts-dejavu-mono.
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235s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ...
235s Unpacking fonts-dejavu-mono (2.37-8) ...
235s Selecting previously unselected package fonts-dejavu-core.
235s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ...
235s Unpacking fonts-dejavu-core (2.37-8) ...
235s Selecting previously unselected package fontconfig-config.
235s Preparing to unpack .../02-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ...
235s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
235s Selecting previously unselected package libfontconfig1:amd64.
235s Preparing to unpack .../03-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ...
235s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ...
235s Selecting previously unselected package fontconfig.
235s Preparing to unpack .../04-fontconfig_2.15.0-2ubuntu1_amd64.deb ...
235s Unpacking fontconfig (2.15.0-2ubuntu1) ...
235s Selecting previously unselected package libblas3:amd64.
235s Preparing to unpack .../05-libblas3_3.12.1-2_amd64.deb ...
235s Unpacking libblas3:amd64 (3.12.1-2) ...
235s Selecting previously unselected package libpixman-1-0:amd64.
235s Preparing to unpack .../06-libpixman-1-0_0.44.0-3_amd64.deb ...
235s Unpacking libpixman-1-0:amd64 (0.44.0-3) ...
235s Selecting previously unselected package libxcb-render0:amd64.
235s Preparing to unpack .../07-libxcb-render0_1.17.0-2_amd64.deb ...
235s Unpacking libxcb-render0:amd64 (1.17.0-2) ...
235s Selecting previously unselected package libxcb-shm0:amd64.
235s Preparing to unpack .../08-libxcb-shm0_1.17.0-2_amd64.deb ...
235s Unpacking libxcb-shm0:amd64 (1.17.0-2) ...
235s Selecting previously unselected package libxrender1:amd64.
235s Preparing to unpack .../09-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ...
235s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ...
235s Selecting previously unselected package libcairo2:amd64.
235s Preparing to unpack .../10-libcairo2_1.18.2-2_amd64.deb ...
235s Unpacking libcairo2:amd64 (1.18.2-2) ...
235s Selecting previously unselected package libdatrie1:amd64.
235s Preparing to unpack .../11-libdatrie1_0.2.13-3build1_amd64.deb ...
235s Unpacking libdatrie1:amd64 (0.2.13-3build1) ...
235s Selecting previously unselected package libdeflate0:amd64.
235s Preparing to unpack .../12-libdeflate0_1.23-1_amd64.deb ...
235s Unpacking libdeflate0:amd64 (1.23-1) ...
235s Selecting previously unselected package libgfortran5:amd64.
235s Preparing to unpack .../13-libgfortran5_15-20250222-0ubuntu1_amd64.deb ...
235s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ...
235s Selecting previously unselected package libgomp1:amd64.
235s Preparing to unpack .../14-libgomp1_15-20250222-0ubuntu1_amd64.deb ...
235s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ...
235s Selecting previously unselected package libgraphite2-3:amd64.
235s Preparing to unpack .../15-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ...
235s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ...
235s Selecting previously unselected package libharfbuzz0b:amd64.
235s Preparing to unpack .../16-libharfbuzz0b_10.2.0-1_amd64.deb ...
235s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ...
235s Selecting previously unselected package x11-common.
235s Preparing to unpack .../17-x11-common_1%3a7.7+23ubuntu3_all.deb ...
235s Unpacking x11-common (1:7.7+23ubuntu3) ...
235s Selecting previously unselected package libice6:amd64.
235s Preparing to unpack .../18-libice6_2%3a1.1.1-1_amd64.deb ...
235s Unpacking libice6:amd64 (2:1.1.1-1) ...
235s Selecting previously unselected package libjpeg-turbo8:amd64.
235s Preparing to unpack .../19-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ...
235s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ...
235s Selecting previously unselected package libjpeg8:amd64.
236s Preparing to unpack .../20-libjpeg8_8c-2ubuntu11_amd64.deb ...
236s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ...
236s Selecting previously unselected package liblapack3:amd64.
236s Preparing to unpack .../21-liblapack3_3.12.1-2_amd64.deb ...
236s Unpacking liblapack3:amd64 (3.12.1-2) ...
236s Selecting previously unselected package liblerc4:amd64.
236s Preparing to unpack .../22-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ...
236s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ...
236s Selecting previously unselected package libthai-data.
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236s Unpacking libthai-data (0.1.29-2build1) ...
236s Selecting previously unselected package libthai0:amd64.
236s Preparing to unpack .../24-libthai0_0.1.29-2build1_amd64.deb ...
236s Unpacking libthai0:amd64 (0.1.29-2build1) ...
236s Selecting previously unselected package libpango-1.0-0:amd64.
236s Preparing to unpack .../25-libpango-1.0-0_1.56.2-1_amd64.deb ...
236s Unpacking libpango-1.0-0:amd64 (1.56.2-1) ...
236s Selecting previously unselected package libpangoft2-1.0-0:amd64.
236s Preparing to unpack .../26-libpangoft2-1.0-0_1.56.2-1_amd64.deb ...
236s Unpacking libpangoft2-1.0-0:amd64 (1.56.2-1) ...
236s Selecting previously unselected package libpangocairo-1.0-0:amd64.
236s Preparing to unpack .../27-libpangocairo-1.0-0_1.56.2-1_amd64.deb ...
236s Unpacking libpangocairo-1.0-0:amd64 (1.56.2-1) ...
236s Selecting previously unselected package libpaper2:amd64.
236s Preparing to unpack .../28-libpaper2_2.2.5-0.3_amd64.deb ...
236s Unpacking libpaper2:amd64 (2.2.5-0.3) ...
236s Selecting previously unselected package libpaper-utils.
236s Preparing to unpack .../29-libpaper-utils_2.2.5-0.3_amd64.deb ...
236s Unpacking libpaper-utils (2.2.5-0.3) ...
236s Selecting previously unselected package libsharpyuv0:amd64.
236s Preparing to unpack .../30-libsharpyuv0_1.5.0-0.1_amd64.deb ...
236s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ...
236s Selecting previously unselected package libsm6:amd64.
236s Preparing to unpack .../31-libsm6_2%3a1.2.4-1_amd64.deb ...
236s Unpacking libsm6:amd64 (2:1.2.4-1) ...
236s Selecting previously unselected package libtcl8.6:amd64.
236s Preparing to unpack .../32-libtcl8.6_8.6.16+dfsg-1_amd64.deb ...
236s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ...
236s Selecting previously unselected package libjbig0:amd64.
236s Preparing to unpack .../33-libjbig0_2.1-6.1ubuntu2_amd64.deb ...
236s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ...
236s Selecting previously unselected package libwebp7:amd64.
236s Preparing to unpack .../34-libwebp7_1.5.0-0.1_amd64.deb ...
236s Unpacking libwebp7:amd64 (1.5.0-0.1) ...
236s Selecting previously unselected package libtiff6:amd64.
236s Preparing to unpack .../35-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ...
236s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ...
236s Selecting previously unselected package libxft2:amd64.
236s Preparing to unpack .../36-libxft2_2.3.6-1build1_amd64.deb ...
236s Unpacking libxft2:amd64 (2.3.6-1build1) ...
236s Selecting previously unselected package libxss1:amd64.
236s Preparing to unpack .../37-libxss1_1%3a1.2.3-1build3_amd64.deb ...
236s Unpacking libxss1:amd64 (1:1.2.3-1build3) ...
236s Selecting previously unselected package libtk8.6:amd64.
236s Preparing to unpack .../38-libtk8.6_8.6.16-1_amd64.deb ...
236s Unpacking libtk8.6:amd64 (8.6.16-1) ...
236s Selecting previously unselected package libxt6t64:amd64.
236s Preparing to unpack .../39-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ...
236s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ...
236s Selecting previously unselected package zip.
236s Preparing to unpack .../40-zip_3.0-14ubuntu2_amd64.deb ...
236s Unpacking zip (3.0-14ubuntu2) ...
236s Selecting previously unselected package unzip.
236s Preparing to unpack .../41-unzip_6.0-28ubuntu6_amd64.deb ...
236s Unpacking unzip (6.0-28ubuntu6) ...
236s Selecting previously unselected package xdg-utils.
236s Preparing to unpack .../42-xdg-utils_1.2.1-2ubuntu1_all.deb ...
236s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
236s Selecting previously unselected package r-base-core.
236s Preparing to unpack .../43-r-base-core_4.4.3-1_amd64.deb ...
236s Unpacking r-base-core (4.4.3-1) ...
237s Selecting previously unselected package r-cran-abind.
237s Preparing to unpack .../44-r-cran-abind_1.4-8-1_all.deb ...
237s Unpacking r-cran-abind (1.4-8-1) ...
237s Selecting previously unselected package r-cran-deldir.
237s Preparing to unpack .../45-r-cran-deldir_2.0-4-1build1_amd64.deb ...
237s Unpacking r-cran-deldir (2.0-4-1build1) ...
237s Selecting previously unselected package r-cran-goftest.
237s Preparing to unpack .../46-r-cran-goftest_1.2-3-1_amd64.deb ...
237s Unpacking r-cran-goftest (1.2-3-1) ...
237s Selecting previously unselected package r-cran-lattice.
237s Preparing to unpack .../47-r-cran-lattice_0.22-6-1_amd64.deb ...
237s Unpacking r-cran-lattice (0.22-6-1) ...
237s Selecting previously unselected package r-cran-locfit.
237s Preparing to unpack .../48-r-cran-locfit_1.5-9.12-1_amd64.deb ...
237s Unpacking r-cran-locfit (1.5-9.12-1) ...
237s Selecting previously unselected package r-cran-matrix.
237s Preparing to unpack .../49-r-cran-matrix_1.7-3-1_amd64.deb ...
237s Unpacking r-cran-matrix (1.7-3-1) ...
237s Selecting previously unselected package r-cran-nlme.
237s Preparing to unpack .../50-r-cran-nlme_3.1.167-1_amd64.deb ...
237s Unpacking r-cran-nlme (3.1.167-1) ...
237s Selecting previously unselected package r-cran-mgcv.
237s Preparing to unpack .../51-r-cran-mgcv_1.9-1-1_amd64.deb ...
237s Unpacking r-cran-mgcv (1.9-1-1) ...
237s Selecting previously unselected package r-cran-polyclip.
237s Preparing to unpack .../52-r-cran-polyclip_1.10-7-1_amd64.deb ...
237s Unpacking r-cran-polyclip (1.10-7-1) ...
237s Selecting previously unselected package r-cran-survival.
237s Preparing to unpack .../53-r-cran-survival_3.8-3-1_amd64.deb ...
237s Unpacking r-cran-survival (3.8-3-1) ...
237s Selecting previously unselected package r-cran-rpart.
237s Preparing to unpack .../54-r-cran-rpart_4.1.24-1_amd64.deb ...
237s Unpacking r-cran-rpart (4.1.24-1) ...
237s Selecting previously unselected package r-cran-spatstat.utils.
237s Preparing to unpack .../55-r-cran-spatstat.utils_3.1-2-1_amd64.deb ...
237s Unpacking r-cran-spatstat.utils (3.1-2-1) ...
237s Selecting previously unselected package r-cran-spatstat.data.
237s Preparing to unpack .../56-r-cran-spatstat.data_3.1-4-1_all.deb ...
237s Unpacking r-cran-spatstat.data (3.1-4-1) ...
237s Selecting previously unselected package r-cran-spatstat.univar.
237s Preparing to unpack .../57-r-cran-spatstat.univar_3.1-1-1build1_amd64.deb ...
237s Unpacking r-cran-spatstat.univar (3.1-1-1build1) ...
237s Selecting previously unselected package r-cran-spatstat.geom.
237s Preparing to unpack .../58-r-cran-spatstat.geom_3.3-5-1_amd64.deb ...
237s Unpacking r-cran-spatstat.geom (3.3-5-1) ...
237s Selecting previously unselected package r-cran-spatstat.random.
237s Preparing to unpack .../59-r-cran-spatstat.random_3.3-2-1_amd64.deb ...
237s Unpacking r-cran-spatstat.random (3.3-2-1) ...
237s Selecting previously unselected package r-cran-tensor.
237s Preparing to unpack .../60-r-cran-tensor_1.5-4_all.deb ...
237s Unpacking r-cran-tensor (1.5-4) ...
237s Selecting previously unselected package r-cran-spatstat.sparse.
237s Preparing to unpack .../61-r-cran-spatstat.sparse_3.1-0-1_amd64.deb ...
237s Unpacking r-cran-spatstat.sparse (3.1-0-1) ...
237s Selecting previously unselected package r-cran-spatstat.explore.
237s Preparing to unpack .../62-r-cran-spatstat.explore_3.3-4-1_amd64.deb ...
237s Unpacking r-cran-spatstat.explore (3.3-4-1) ...
237s Selecting previously unselected package r-cran-spatstat.model.
237s Preparing to unpack .../63-r-cran-spatstat.model_3.3-4-1_amd64.deb ...
237s Unpacking r-cran-spatstat.model (3.3-4-1) ...
237s Selecting previously unselected package r-cran-spatstat.linnet.
237s Preparing to unpack .../64-r-cran-spatstat.linnet_3.2-5-1_amd64.deb ...
237s Unpacking r-cran-spatstat.linnet (3.2-5-1) ...
238s Selecting previously unselected package r-cran-spatstat.
238s Preparing to unpack .../65-r-cran-spatstat_3.3-1-1_amd64.deb ...
238s Unpacking r-cran-spatstat (3.3-1-1) ...
238s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ...
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241s Setting up r-cran-spatstat.random (3.3-2-1) ...
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241s Setting up r-cran-spatstat.model (3.3-4-1) ...
241s Setting up r-cran-spatstat.linnet (3.2-5-1) ...
241s Setting up r-cran-spatstat (3.3-1-1) ...
241s Processing triggers for install-info (7.1.1-1) ...
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241s Processing triggers for man-db (2.13.0-1) ...
243s autopkgtest [23:52:38]: test run-unit-test: [-----------------------
243s BEGIN TEST testsAtoK.R
244s
244s R version 4.4.3 (2025-02-28) -- "Trophy Case"
244s Copyright (C) 2025 The R Foundation for Statistical Computing
244s Platform: x86_64-pc-linux-gnu
244s
244s R is free software and comes with ABSOLUTELY NO WARRANTY.
244s You are welcome to redistribute it under certain conditions.
244s Type 'license()' or 'licence()' for distribution details.
244s
244s R is a collaborative project with many contributors.
244s Type 'contributors()' for more information and
244s 'citation()' on how to cite R or R packages in publications.
244s
244s Type 'demo()' for some demos, 'help()' for on-line help, or
244s 'help.start()' for an HTML browser interface to help.
244s Type 'q()' to quit R.
244s
244s > #'
244s > #' Header for all (concatenated) test files
244s > #'
244s > #' Require spatstat.linnet
244s > #' Obtain environment variable controlling tests.
244s > #'
244s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $
244s >
244s > require(spatstat.linnet)
244s Loading required package: spatstat.linnet
244s Loading required package: spatstat.data
246s Loading required package: spatstat.univar
246s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0)
246s > ALWAYS <- TRUE
246s > cat(paste("--------- Executing",
246s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of",
246s + "test code -----------\n"))
246s --------- Executing **RESTRICTED** subset of test code -----------
246s > #' tests/aucroc.R
246s > #'
246s > #' AUC and ROC code
246s > #'
246s > #' $Revision: 1.6 $ $Date: 2020/11/02 06:26:45 $
246s >
246s > local({
246s + if(FULLTEST) {
246s + A <- roc(spiders, "x")
246s + B <- auc(spiders, "y")
246s + fut <- lppm(spiders ~ I(y-x))
246s + f <- roc(fut)
246s + g <- auc(fut)
246s + }
246s + })
246s > ## tests/cdf.test.R
246s >
246s >
246s > local({
246s + NSIM <- 9
246s + op <- spatstat.options(ndummy.min=16, npixel=32)
246s + op <- spatstat.options(ndummy.min=16, npixel=32)
246s + if(ALWAYS) {
246s + ## (3) linear networks
246s + set.seed(42)
246s + X <- runiflpp(20, simplenet)
246s + cdf.test(X, "x")
246s + if(FULLTEST) {
246s + cdf.test(X, "x", "cvm")
246s + cdf.test(X %mark% runif(20), "x")
246s + }
246s + fit <- lppm(X ~1)
246s + cdf.test(fit, "y", "cvm", nsim=NSIM)
246s + if(FULLTEST) {
246s + cdf.test(fit, "y", nsim=NSIM)
246s + cdf.test(fit, "y", "ad", nsim=NSIM)
246s + }
246s + if(FULLTEST) {
246s + ## marked
246s + cdf.test(chicago, "y")
246s + cdf.test(subset(chicago, marks != "assault"), "y")
246s + }
246s + }
246s + reset.spatstat.options()
246s + })
246s >
246s >
246s > #'
246s > #' tests/cluck.R
246s > #'
246s > #' Tests of "click*" functions
246s > #' using queueing feature of spatstatLocator
246s > #'
246s > #' $Revision: 1.8 $ $Date: 2022/10/23 00:45:36 $
246s >
246s > local({
246s + Y <- coords(runiflpp(6, simplenet))
246s + if(FULLTEST) {
246s + #' clicklpp
246s + spatstat.utils::queueSpatstatLocator(Y)
246s + XL <- clicklpp(simplenet)
246s + }
246s + if(ALWAYS) {
246s + spatstat.utils::queueSpatstatLocator(Y)
246s + XM <- clicklpp(simplenet, n=3, types=c("a", "b"))
246s + }
246s + if(ALWAYS) {
246s + #' lineardisc
246s + plot(simplenet)
246s + spatstat.utils::queueSpatstatLocator(as.ppp(runiflpp(1, simplenet)))
246s + V <- lineardisc(simplenet, r=0.3)
246s + }
246s + })
246s Ready to click..
246s > #'
246s > #' tests/disconnected.R
246s > #'
246s > #' disconnected linear networks
246s > #'
246s > #' $Revision: 1.4 $ $Date: 2020/04/28 12:58:26 $
246s >
246s >
246s > local({
246s +
246s + #' disconnected network
246s + m <- simplenet$m
246s + m[4,5] <- m[5,4] <- m[6,10] <- m[10,6] <- m[4,6] <- m[6,4] <- FALSE
246s + L <- linnet(vertices(simplenet), m)
246s + if(FULLTEST) {
246s + L
246s + summary(L)
246s + is.connected(L)
246s + Z <- connected(L, what="components")
246s + }
246s +
246s + #' point pattern with no points in one connected component
246s + set.seed(42)
246s + X <- rpoislpp(lambda=function(x,y) { 10 * (x < 0.5)}, L)
246s + B <- lineardirichlet(X)
246s + if(FULLTEST) {
246s + plot(B)
246s + summary(B)
246s + }
246s + if(ALWAYS) {
246s + D <- pairdist(X)
246s + A <- nndist(X)
246s + }
246s + if(FULLTEST) {
246s + H <- nnwhich(X)
246s + Y <- rpoislpp(lambda=function(x,y) { 10 * (x < 0.5)}, L)
246s + G <- nncross(X, Y)
246s + J <- crossdist(X, Y)
246s + plot(distfun(X)) # includes evaluation of nncross(what="dist")
246s + }
246s +
246s + #' K functions in disconnected network
246s + if(ALWAYS) {
246s + K <- linearK(X)
246s + lamX <- intensity(X)
246s + nX <- npoints(X)
246s + KI <- linearKinhom(X, lambda=rep(lamX, nX))
246s + P <- linearpcf(X)
246s + PJ <- linearpcfinhom(X, lambda=rep(lamX, nX))
246s + }
246s + Y <- X %mark% factor(rep(1:2, nX)[1:nX])
246s + if(FULLTEST) {
246s + Y1 <- split(Y)[[1]]
246s + Y2 <- split(Y)[[2]]
246s + KY <- linearKcross(Y)
246s + PY <- linearpcfcross(Y)
246s + KYI <- linearKcross.inhom(Y, lambdaI=rep(intensity(Y1), npoints(Y1)),
246s + lambdaJ=rep(intensity(Y2), npoints(Y2)))
246s + PYI <- linearpcfcross.inhom(Y, lambdaI=rep(intensity(Y1), npoints(Y1)),
246s + lambdaJ=rep(intensity(Y2), npoints(Y2)))
246s + }
246s +
246s + #' internal utilities
246s + if(FULLTEST) {
246s + K <- ApplyConnected(X, linearK, rule=function(...) list())
246s + }
246s + })
246s >
246s >
246s > #
246s > # tests/envelopes.R
246s > #
246s > # Test validity of envelope data
246s > #
246s > # $Revision: 1.29 $ $Date: 2024/01/10 13:45:29 $
246s > #
246s >
246s > local({
246s +
246s +
246s +
246s +
246s +
246s +
246s +
246s +
246s +
246s + if(FULLTEST) {
246s + X <- runiflpp(10, simplenet)
246s + Xr <- X %mark% runif(10)
246s + Xc <- X %mark% factor(letters[c(1:4,3,2,4:1)])
246s + X2 <- X %mark% data.frame(height=runif(10), width=runif(10))
246s +
246s + E <- envelope(X, linearK, nsim=9)
246s + Er <- envelope(Xr, linearK, nsim=9)
246s + Ec <- envelope(Xc, linearK, nsim=9)
246s + E2 <- envelope(X2, linearK, nsim=9)
246s +
246s + Erf <- envelope(Xr, linearK, nsim=9, fix.n=TRUE)
246s + E2f <- envelope(X2, linearK, nsim=9, fix.n=TRUE)
246s +
246s + Ecf <- envelope(Xc, linearK, nsim=9, fix.n=TRUE)
246s + Ecm <- envelope(Xc, linearKcross, nsim=9, fix.n=TRUE, fix.marks=TRUE)
246s +
246s + fut <- lppm(Xc ~ marks)
246s + EEf <- envelope(fut, linearK, fix.n=TRUE)
246s + EEm <- envelope(fut, linearKcross, fix.n=TRUE, fix.marks=TRUE)
246s + }
246s +
246s + ## close 'local'
246s + })
246s > #
246s > # tests/func.R
246s > #
246s > # $Revision: 1.9 $ $Date: 2022/10/23 00:48:40 $
246s > #
246s > # Tests of 'funxy' infrastructure etc
246s >
246s > if(FULLTEST) {
246s + local({
246s + ## Check the peculiar function-building code in funxy
246s + W <- square(1)
246s + f1a <- function(x, y) sqrt(x^2 + y^2)
246s + F1a <- funxy(f1a, W)
246s + Y <- runiflpp(5, simplenet)
246s + b <- F1a(Y)
246s + })
246s + }
246s >
246s >
246s > #' tests/hypotests.R
246s > #' Hypothesis tests
246s > #'
246s > #' $Revision: 1.10 $ $Date: 2023/07/17 07:30:48 $
246s >
246s > if(FULLTEST) {
246s + local({
246s + berman.test(spiders, "x")
246s + berman.test(lppm(spiders ~ x), "y")
246s +
246s + })
246s + }
246s > #
246s > # tests/imageops.R
246s > #
246s > # $Revision: 1.43 $ $Date: 2023/08/29 01:03:59 $
246s > #
246s >
246s >
246s >
246s > if(FULLTEST) {
246s + local({
246s + d <- distmap(cells, dimyx=32)
246s + ## linear networks
246s + ee <- d[simplenet, drop=FALSE]
246s + eev <- d[simplenet]
246s + })
246s + }
246s >
246s BEGIN TEST testsL.R
246s
246s R version 4.4.3 (2025-02-28) -- "Trophy Case"
246s Copyright (C) 2025 The R Foundation for Statistical Computing
246s Platform: x86_64-pc-linux-gnu
246s
246s R is free software and comes with ABSOLUTELY NO WARRANTY.
246s You are welcome to redistribute it under certain conditions.
246s Type 'license()' or 'licence()' for distribution details.
246s
246s R is a collaborative project with many contributors.
246s Type 'contributors()' for more information and
246s 'citation()' on how to cite R or R packages in publications.
246s
246s Type 'demo()' for some demos, 'help()' for on-line help, or
246s 'help.start()' for an HTML browser interface to help.
246s Type 'q()' to quit R.
246s
246s > #'
246s > #' Header for all (concatenated) test files
246s > #'
246s > #' Require spatstat.linnet
246s > #' Obtain environment variable controlling tests.
246s > #'
246s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $
246s >
246s > require(spatstat.linnet)
246s spatstat.univar 3.1-1
246s Loading required package: spatstat.geom
246s spatstat.geom 3.3-5
246s Loading required package: spatstat.random
246s spatstat.random 3.3-2
246s Loading required package: spatstat.explore
246s Loading required package: nlme
246s spatstat.explore 3.3-4
246s Loading required package: spatstat.model
246s Loading required package: rpart
246s spatstat.model 3.3-4
246s spatstat.linnet 3.2-5
246s Warning messages:
246s 1: In title(main = main, cex = cex.main.rela, col = gparam$col.main, :
246s for 'Points of type ‘a’ ' in 'mbcsToSbcs': ' substituted for ‘ (U+2018)
246s 2: In title(main = main, cex = cex.main.rela, col = gparam$col.main, :
246s for 'Points of type ‘a’ ' in 'mbcsToSbcs': ' substituted for ’ (U+2019)
246s 3: In title(main = main, cex = cex.main.rela, col = gparam$col.main, :
246s for 'Points of type ‘b’ ' in 'mbcsToSbcs': ' substituted for ‘ (U+2018)
246s 4: In title(main = main, cex = cex.main.rela, col = gparam$col.main, :
246s for 'Points of type ‘b’ ' in 'mbcsToSbcs': ' substituted for ’ (U+2019)
246s Warning message:
246s Network is not connected
246s Loading required package: spatstat.linnet
246s Loading required package: spatstat.data
246s Loading required package: spatstat.univar
246s spatstat.univar 3.1-1
246s Loading required package: spatstat.geom
247s spatstat.geom 3.3-5
247s Loading required package: spatstat.random
247s spatstat.random 3.3-2
247s Loading required package: spatstat.explore
247s Loading required package: nlme
247s spatstat.explore 3.3-4
247s Loading required package: spatstat.model
247s Loading required package: rpart
247s spatstat.model 3.3-4
247s spatstat.linnet 3.2-5
247s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0)
247s > ALWAYS <- TRUE
247s > cat(paste("--------- Executing",
247s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of",
247s + "test code -----------\n"))
247s --------- Executing **RESTRICTED** subset of test code -----------
247s > #
247s > # tests/lppstuff.R
247s > #
247s > # Tests for lpp code
247s > #
247s > # $Revision: 1.74 $ $Date: 2025/01/18 03:44:09 $
247s >
247s >
247s > local({
247s + if(ALWAYS) {
247s + #' make test data
247s + Xsimple <- runiflpp(6, simplenet)
247s + Xchic <- chicago[c(TRUE, FALSE)]
247s + Xspid <- spiders[c(TRUE, FALSE)]
247s + Xdend <- dendrite[seq_len(npoints(dendrite)) %% 8 == 0]
247s + }
247s +
247s + if(FULLTEST) {
247s + #' lpp class support
247s + Xone <- Xsimple %mark% runif(6)
247s + Xtwo <- Xsimple %mark% data.frame(a=1:6, b=runif(6))
247s + print(summary(Xone))
247s + print(summary(Xtwo))
247s + plot(Xsimple, show.window=TRUE)
247s + plot(Xone)
247s + plot(Xtwo, do.several=FALSE)
247s + #' geometry etc
247s + rotate(Xsimple, pi/3, centre=c(0.2,0.3))
247s + superimpose.lpp(L=simplenet)
247s + W <- Window(Xsimple)
247s + #' cut.lpp
247s + tes <- lineardirichlet(Xsimple[1:4])
247s + f <- as.linfun(tes)
247s + Z <- as.linim(f)
247s + cut(Xsimple, tes)
247s + cut(Xsimple, f)
247s + cut(Xsimple, Z)
247s +
247s + #' check 'normalise' option in linearKinhom
247s + fit <- lppm(Xsimple ~x)
247s + K <- linearKinhom(Xsimple, lambda=fit, normalise=FALSE, leaveoneout=FALSE)
247s + plot(K)
247s + g <- linearpcfinhom(Xsimple, lambda=fit, normalise=FALSE, leaveoneout=FALSE)
247s + plot(g)
247s + K <- linearKinhom(Xsimple, lambda=fit, normalise=TRUE, leaveoneout=FALSE)
247s + plot(K)
247s + g <- linearpcfinhom(Xsimple, lambda=fit, normalise=TRUE, leaveoneout=FALSE)
247s + plot(g)
247s + ## other code blocks
247s + K <- linearKinhom(Xsimple, lambda=fit, correction="none", ratio=TRUE)
247s + g <- linearpcf(Xsimple, correction="none", ratio=TRUE)
247s + g1 <- linearpcf(Xsimple[1], ratio=TRUE)
247s + K1 <- linearKcross(dendrite[1], "thin", "thin", ratio=TRUE)
247s + ## check empty patterns OK
247s + X0 <- runiflpp(0, simplenet)
247s + print(X0)
247s + g <- linearpcf(X0, ratio=TRUE)
247s + }
247s +
247s + ## nearest neighbour distances
247s + eps <- sqrt(.Machine$double.eps)
247s + f <- function(mat,k) { apply(mat, 1, function(z,n) { sort(z)[n] }, n=k+1) }
247s + g <- function(mat,k) { apply(mat, 1, function(z,n) { order(z)[n] }, n=k+1) }
247s +
247s + if(ALWAYS) {
247s + nn <- nndist(Xspid)
247s + nnP <- f(pairdist(Xspid), 1)
247s + if(any(abs(nn - nnP) > eps))
247s + stop("nndist.lpp does not agree with pairdist.lpp")
247s +
247s + nw <- nnwhich(Xspid)
247s + nwP <- g(pairdist(Xspid), 1)
247s + if(any(nw != nwP))
247s + stop("nnwhich.lpp does not agree with pairdist")
247s + }
247s +
247s + if(FULLTEST) {
247s + #' code blocks in nndist.lpp/nnwhich.lpp
247s + #' non-sparse network, interpreted code
247s + Ad <- nndist(Xspid, method="interpreted")
247s + Aw <- nnwhich(Xspid, method="interpreted")
247s + #' sparse network, older C code
247s + opa <- spatstat.options(Cnndistlpp=FALSE)
247s + Bd <- nndist(dendrite)
247s + Bw <- nnwhich(dendrite)
247s + spatstat.options(opa)
247s + #' undefined nearest neighbours
247s + Ed <- nndist(Xspid[1:3], k=1:3)
247s + Ew <- nnwhich(Xspid[1:3], k=1:3)
247s +
247s + #' trivial cases in nncross.lpp
247s + a <- nncross(runiflpp(0, simplenet), runiflpp(1, simplenet),
247s + what="which", format="list")$which
247s + a <- nncross(runiflpp(0, simplenet), runiflpp(1, simplenet),
247s + what="dist", format="list")$dist
247s + }
247s +
247s + if(ALWAYS) {
247s + #' compare algorithms
247s + ZZ <- split(Xchic)
247s + XX <- ZZ$damage
247s + YY <- ZZ$assault
247s + op <- spatstat.options(Cnncrosslpp=FALSE)
247s + a <- nncross(XX, YY)
247s + spatstat.options(Cnncrosslpp=TRUE)
247s + b <- nncross(XX, YY)
247s + if(any(a$which != b$which))
247s + stop("Inconsistent values of nncross.lpp()$which from different C code")
247s + if(max(abs(a$dist - b$dist)) > eps)
247s + stop("Inconsistent values of nncross.lpp()$dist from different C code")
247s +
247s + spatstat.options(Cnncrosslpp=TRUE)
247s + b2 <- nncross(XX, YY, k=1:2, what="which")
247s + if(any(b2$which.1 != b$which))
247s + stop("inconsistent values of nncross.lpp()$which from k=1:2 and k=1")
247s + a2 <- nncross(XX, YY, k=1:2, what="dist")
247s + if(max(abs(a2$dist.1 - a$dist)) > eps)
247s + stop("Inconsistent values of nncross.lpp()$dist from k=1:2 and k=1")
247s +
247s + spatstat.options(Cnncrosslpp=TRUE)
247s + ii <- seq_len(npoints(XX))
247s + w1 <- nnwhich(XX)
247s + w2 <- nncross(XX, XX, iX=ii, iY=ii, what="which")
247s + w3 <- nncross(XX, XX, iX=ii, iY=ii, what="which", method="interpreted")
247s + if(any(w1 != w2))
247s + stop("nnwhich.lpp disagrees with nncross.lpp(iX, iY)")
247s + if(any(w2 != w3))
247s + stop("Different results for nncross.lpp(iX, iY, 'which') using R and C")
247s + d1 <- nndist(XX)
247s + d2 <- nncross(XX, XX, iX=ii, iY=ii, what="dist")
247s + d3 <- nncross(XX, XX, iX=ii, iY=ii, what="dist", method="interpreted")
247s + if(max(abs(d1-d2)) > eps)
247s + stop("nndist.lpp disagrees with nncross.lpp(iX, iY)")
247s + if(max(abs(d2-d3)) > eps)
247s + stop("Different results for nncross.lpp(iX, iY, 'dist') using R and C")
247s + spatstat.options(Cnncrosslpp=FALSE)
247s + w4 <- nncross(XX, XX, iX=ii, iY=ii, what="which")
247s + d4 <- nncross(XX, XX, iX=ii, iY=ii, what="dist")
247s + if(any(w2 != w4))
247s + stop("Different results for nncross.lpp(iX, iY, 'which') fast and slow C")
247s + if(max(abs(d2-d4)) > eps)
247s + stop("Different results for nncross.lpp(iX, iY, 'dist') fast and slow C")
247s + spatstat.options(Cnncrosslpp=TRUE)
247s + }
247s +
247s + reset.spatstat.options()
247s +
247s + if(FULLTEST) {
247s + ## test handling marginal cases
247s + xyd <- nncross(XX, YY[1])
247s + A <- runiflpp(5, simplenet)
247s + B <- runiflpp(2, simplenet)
247s + aaa <- nncross(A,B,k=3:5) #' all undefined
247s + aaa <- nncross(A,B,k=1:4) #' some undefined
247s + spatstat.options(Cnncrosslpp=FALSE)
247s + aaa <- nncross(A,B,k=3:5)
247s + aaa <- nncross(A,B,k=1:4)
247s + bbb <- nncross(B,A, iX=1:2, iY=1:5) # another code block
247s + spatstat.options(Cnncrosslpp=TRUE)
247s + reset.spatstat.options()
247s + }
247s +
247s + if(FULLTEST) {
247s + ## as.linnet.psp (Suman's example)
247s + Lines <- as.data.frame(as.psp(simplenet))
247s + newseg <- c(Lines[1,1:2], Lines[10,3:4])
247s + Lines <- rbind(Lines, newseg)
247s + Y <- as.psp(Lines, window=Window(simplenet))
247s + marks(Y) <- c(3, 4, 5, 5, 3, 4, 5, 5,5, 5,1)
247s + Z <- as.linnet(Y) # can crash if marks don't match segments
247s +
247s + ## Test linnet surgery code
247s + RL <- joinVertices(simplenet, matrix(c(2,3), ncol=2)) # redundant edge
247s + RZ <- joinVertices(Z, matrix(c(2,3), ncol=2), marks=6) # redundant edge
247s + JZ <- joinVertices(Z, matrix(c(2,7), ncol=2), marks=6) # new edge
247s + set.seed(42)
247s + X <- runiflpp(30, simplenet)
247s + V <- runiflpp(30, simplenet)
247s + XV <- insertVertices(X, V)
247s + validate.lpp.coords(XV, context="calculated by insertVertices")
247s + X0 <- insertVertices(X, x=numeric(0), y=numeric(0))
247s + ## vertices on boundary of new window
247s + LL <- simplenet[boundingbox(vertices(simplenet))]
247s +
247s + ## thinNetwork for lpp and linim
247s + Xthin <- thinNetwork(X, retainedges=1:3)
247s + D <- density(X, 0.1)
247s + Dthin <- thinNetwork(D, retainedges=1:3)
247s +
247s + ## Test [.lpp internal data
247s + B <- owin(c(0.1,0.7),c(0.19,0.6))
247s + XB <- X[B]
247s + validate.lpp.coords(XB, context="returned by [.lpp")
247s + }
247s +
247s + ## Tests related to linearK, etc
247s + testcountends <- function(X, r=100, s=1) {
247s + if(s != 1) {
247s + X <- rescale(X, s)
247s + r <- r/s
247s + }
247s + L <- as.linnet(X)
247s + n1 <- countends(L, X[1], r)
247s + n2 <- npoints(lineardisc(L, X[1], r, plotit=FALSE)$endpoints)
247s + if(n1 != n2)
247s + stop(paste("Incorrect result from countends:",
247s + n1, "!=", n2,
247s + spatstat.utils::paren(paste("scale=", 1/s))),
247s + call.=FALSE)
247s + }
247s +
247s + if(ALWAYS) {
247s + ## original scale
247s + XU <- unmark(Xchic)
247s + testcountends(XU)
247s + ## finer scale
247s + testcountends(XU, s=1000)
247s + #' disconnected
247s + L <- thinNetwork(simplenet, retainedges = -c(3,8))
247s + S <- as.psp(L)
247s + x <- midpoints.psp(S)[1]
247s + len <- lengths_psp(S)[1]
247s + A <- lineardisc(L, x, len, plotit=FALSE) #involves many segments of network
247s + B <- lineardisc(L, x, len/5, plotit=FALSE) # involves one segment of network
247s + op <- spatstat.options(Ccountends=FALSE)
247s + A <- lineardisc(L, x, len, plotit=FALSE)
247s + B <- lineardisc(L, x, len/5, plotit=FALSE)
247s + reset.spatstat.options()
247s +
247s + ## Test algorithms for boundingradius.linnet
247s + L <- as.linnet(chicago, sparse=TRUE)
247s + L$boundingradius <- NULL # artificially remove
247s + opa <- spatstat.options(Clinearradius=FALSE)
247s + bR <- as.linnet(L, sparse=FALSE)$boundingradius
247s + spatstat.options(Clinearradius=TRUE)
247s + bC <- as.linnet(L, sparse=FALSE)$boundingradius
247s + spatstat.options(opa)
247s + if(abs(bR-bC) > 0.001 * (bR+bC)/2)
247s + stop("Disagreement between R and C algorithms for boundingradius.linnet",
247s + call.=FALSE)
247s + }
247s +
247s + if(FULLTEST) {
247s + ## linnet things
247s + is.connected(as.linnet(dendrite))
247s + zik <- rescale(Xchic, 39.37/12, "m")
247s + Simon <- simplenet
247s + unitname(Simon) <- list("metre", "metres", 0.5)
247s + b <- rescale(Simon)
247s + ds <- density(simplenet, 0.05)
247s + }
247s +
247s + if(ALWAYS) {
247s + ## invoke dist2dpath
247s + LS <- as.linnet(simplenet, sparse=TRUE)
247s + LF <- as.linnet(LS, sparse=FALSE)
247s + ## direct call dist2dpath
247s + d <- simplenet$dpath
247s + d[!simplenet$m] <- Inf
247s + diag(d) <- 0
247s + dd <- dist2dpath(d, method="interpreted")
247s + ra <- range(dd - simplenet$dpath)
247s + if(max(abs(ra)) > sqrt(.Machine$double.eps))
247s + stop("dist2dpath gives different answers in C and R code")
247s + }
247s +
247s + if(FULLTEST) {
247s + ## integral.linim with missing entries
247s + xcoord <- linfun(function(x,y,seg,tp) { x }, domain(Xchic))
247s + xcoord <- as.linim(xcoord, dimyx=32)
247s + integral(xcoord)
247s +
247s + ## Math.linim
247s + range(xcoord)
247s + stopifnot(is.linim(sqrt(xcoord)))
247s + stopifnot(is.linim(-xcoord))
247s + stopifnot(is.linim(xcoord + xcoord))
247s + stopifnot(is.linim(xcoord/3))
247s +
247s + ## options to plot.linim
247s + plot(xcoord, legend=FALSE)
247s + plot(xcoord, leg.side="top")
247s + plot(xcoord, style="width", leg.side="bottom")
247s +
247s + ## as.linim.linim
247s + xxcc <- as.linim(xcoord)
247s + xxcceps <- as.linim(xcoord, eps=15)
247s + xxccdel <- as.linim(xcoord, delta=30)
247s + df1 <- attr(xxcc, "df")
247s + df2 <- attr(xxccdel, "df")
247s + df3 <- resampleNetworkDataFrame(df1, df2)
247s +
247s + ## linim with complex values
247s + Zc <- as.im(function(x,y){(x-y) + x * 1i}, Frame(simplenet))
247s + Fc <- linim(simplenet, Zc)
247s + print(Fc)
247s + print(summary(Fc))
247s +
247s + ## linim with df provided
247s + Z <- as.im(function(x,y) {x-y}, Frame(simplenet))
247s + X <- linim(simplenet, Z)
247s + df <- attr(X, "df")
247s + XX <- linim(simplenet, Z, df=df)
247s + dfwithout <- df[, colnames(df) != "values"]
247s + XXX <- linim(simplenet, Z, df=dfwithout)
247s + plot(XXX, zlim=c(-1,1))
247s + plot(XXX, legend=FALSE)
247s + plot(XXX, leg.side="bottom")
247s +
247s + ## lpp with multiple columns of marks
247s + M <- Xchic
247s + marks(M) <- cbind(type=marks(M), data.frame(distnearest=nndist(M)))
247s + plot(M, main="")
247s + summary(M)
247s + MM <- cut(M)
247s +
247s + #' other cases
247s + CC <- cut(Xchic)
247s + nd <- nndist(Xspid)
247s + SX <- cut(Xspid %mark% nd, breaks=3)
247s + SX <- cut(Xspid, nd, breaks=c(0,100,200,Inf), include.lowest=TRUE)
247s +
247s + ## linequad
247s + Y <- Xsimple %mark% factor(rep(c("A", "B"), 3))
247s + aX <- linequad(Xsimple)
247s + aY <- linequad(Y)
247s + aXR <- linequad(Xsimple, random=TRUE)
247s + aYR <- linequad(Y, random=TRUE)
247s + P <- as.ppp(Xsimple)
247s + S <- as.psp(domain(Xsimple))
247s + d <- linequad(P, S)
247s + oop <- spatstat.options(Clinequad=FALSE)
247s + bX <- linequad(Xsimple)
247s + spatstat.options(oop)
247s +
247s + ## other internal utilities
247s + df <- pointsAlongNetwork(simplenet, 0.05)
247s + X <- as.ppp(df[,c("x", "y")], W=Frame(simplenet))
247s + A <- local2lpp(simplenet, seg=df$seg, tp=df$tp, X=X, df.only=FALSE)
247s +
247s + ## mark-mark scatterplot uses pairdist
247s + X <- runiflpp(20, simplenet) %mark% runif(20)
247s + markmarkscatter(X, 0.2)
247s + markmarkscatter(X[FALSE], 0.1)
247s +
247s + ## tree branches
247s + ## make a simple tree
247s + m <- simplenet$m
247s + m[8,10] <- m[10,8] <- FALSE
247s + L <- linnet(vertices(simplenet), m)
247s + tb <- treebranchlabels(L, 1)
247s + X <- runiflpp(30, L)
247s + ## delete branch B
247s + XminusB <- deletebranch(X, "b", tb)
247s + ## extract branch B
247s + XB <- extractbranch(X, "b", tb)
247s +
247s + ## cases of lintess()
247s + A <- lintess(simplenet) # argument df missing
247s + S <- as.psp(simplenet)
247s + ns <- nsegments(S)
247s + df <- data.frame(seg=1:ns, t0=0, t1=1, tile=letters[1:ns])
247s + M <- data.frame(len=lengths_psp(S), ang=angles.psp(S))
247s + V <- lintess(simplenet, df, marks=M)
247s +
247s + ## methods for class lintess
247s + U <- unmark(V)
247s + U <- unstack(V)
247s + print(summary(V))
247s + W <- Window(V)
247s + plot(V, style="image")
247s + plot(V, style="width")
247s +
247s + ## linear tessellations infrastructure
247s + nX <- 100
247s + nY <- 20
247s + X <- runiflpp(nX, simplenet)
247s + Y <- runiflpp(nY, simplenet)
247s + tes <- divide.linnet(Y)
247s + cX <- coords(X)
247s + iI <- lineartileindex(cX$seg, cX$tp, tes, method="interpreted")
247s + iC <- lineartileindex(cX$seg, cX$tp, tes, method="C")
247s + iE <- lineartileindex(cX$seg, cX$tp, tes, method="encode")
247s + if(!identical(iI,iC))
247s + stop("conflicting results from lineartileindex (interpreted vs C)")
247s + if(!identical(iI,iE))
247s + stop("conflicting results from lineartileindex (interpreted vs encoded)")
247s + iA <- as.linfun(tes)(X)
247s + if(!identical(iI, iA))
247s + stop("disagreement between as.linfun.lintess and lineartileindex")
247s +
247s + ## intersection of lintess
247s + X <- divide.linnet(runiflpp(4, simplenet))
247s + Y <- divide.linnet(runiflpp(3, simplenet))
247s + nX <- summary(X)$nt
247s + nY <- summary(Y)$nt
247s + marks(X) <- factor(letters[1L + (seq_len(nX) %% 2)])
247s + marks(Y) <- runif(nY)
247s + Zmm <- intersect.lintess(X,Y)
247s + Zum <- intersect.lintess(unmark(X),Y)
247s + Zmu <- intersect.lintess(X,unmark(Y))
247s +
247s + }
247s +
247s + if(FULLTEST) {
247s + #' handling by 'solist', 'unstack', 'plot.solist' etc
247s + L <- simplenet
247s + X <- runiflpp(5, L) %mark% cbind(a=1:5, b=letters[1:5])
247s + ns <- nsegments(L)
247s + df <- data.frame(seg=1:ns, t0=0, t1=1, tile=letters[1:ns])
247s + S <- lintess(L, df)
247s + f <- as.linfun(S)
247s + g <- as.linfun(S, values=seq_len(nsegments(L)))
247s + V <- as.linim(f)
247s + Z <- as.linim(g)
247s + shebang <- solist(L=L, X=X, S=S, f=f, g=g, V=V, Z=Z)
247s + plot(shebang)
247s + plot(shebang, valuesAreColours=FALSE)
247s + kapow <- unstack(shebang)
247s + plot(kapow)
247s + }
247s +
247s + #' kernel density estimation
247s + X <- Xsimple[1:5]
247s + w <- runif(npoints(X))
247s + if(ALWAYS) {
247s + #' density.lpp -> densityHeat, includes platform-dependent code
247s + D <- density(X, 0.05)
247s + D <- density(X, 0.05, weights=w)
247s + }
247s + if(FULLTEST) {
247s + #' code blocks
247s + D <- density(X[FALSE], 0.05)
247s + D <- density(X, Inf)
247s + D <- density(X, 0.05, finespacing=TRUE) # }
247s + D <- density(X, 0.05, eps=0.008) # } code blocks in resolve.heat.steps
247s + D <- density(X, 0.05, dimyx=256) # }
247s + }
247s + if(ALWAYS) {
247s + DX <- density(X, 0.05, at="points", fastmethod="a", debug=TRUE)
247s + DX <- density(X, 0.05, at="points", fast=FALSE, debug=TRUE)
247s + ## densityfun.lpp, code blocks
247s + ff <- densityfun(X, 0.05, nsigma=Inf)
247s + }
247s + if(FULLTEST) {
247s + #' disconnected network
247s + L <- thinNetwork(simplenet, retainedges=-c(3,5))
247s + Y <- runiflpp(5, L)
247s + D <- density(Y, 0.05)
247s + D <- density(Y, 0.05, weights=w)
247s + D <- density(Y, Inf)
247s + g <- flatdensityfunlpp(Y, disconnect=FALSE)
247s + a <- flatdensityatpointslpp(Y, disconnect=FALSE)
247s + #' density.lpp -> densityEqualSplit
247s + D <- density(X, 0.05, kernel="e", weights=w)
247s + D <- density(X, Inf, kernel="e")
247s + D <- density(Y, 0.05, kernel="e", weights=w)
247s + D <- density(Y, Inf, kernel="e")
247s + }
247s + if(ALWAYS) {
247s + #' density.lpp -> densityQuick.lpp
247s + D <- density(X, 0.05, distance="e", weights=runif(5))
247s + }
247s + if(FULLTEST) {
247s + D <- density(X, Inf, distance="e")
247s + D <- density(Y, 0.05, distance="e", weights=runif(5))
247s + D <- density(Y, Inf, distance="e")
247s + ## example from Andrea Gilardi
247s + ## with duplicated points, and points at a vertex
247s + A <- runiflpp(5, simplenet)
247s + V <- lpp(vertices(simplenet)[2:4], simplenet)
247s + B <- superimpose(A, A[3], V)
247s + D <- density(B, sigma=0.2, distance="e", at="points")
247s + if(length(as.numeric(D)) != npoints(B))
247s + stop("density.lpp(at='points') returns wrong number of values")
247s + G <- superimpose(U=runiflpp(4, simplenet), B=B)
247s + b <- bw.relrisklpp(G, distance="e", nh=2)
247s + }
247s + if(FULLTEST) {
247s + #' densityVoronoi.lpp and related code
247s + densityVoronoi(X, f=0)
247s + densityVoronoi(X, f=1e-8)
247s + densityVoronoi(X, f=1)
247s + densityVoronoi(X[FALSE], f=0.5)
247s + XX <- X[rep(1:npoints(X), 4)]
247s + densityVoronoi(XX, f=0.99999, nrep=5)
247s + densityVoronoi(Y, f=0)
247s + densityVoronoi(Y, f=1e-8)
247s + densityVoronoi(Y, f=1)
247s + densityVoronoi(Y[FALSE], f=0.5)
247s + #' bandwidth selection
247s + bw.voronoi(X, nrep=4, prob=c(0.2, 0.4, 0.6))
247s + bw.lppl(X)
247s + sug <- seq(0.1, 0.3, by=0.05)
247s + bw.lppl(X, sigma=sug)
247s + bw.lppl(X, sigma=sug, shortcut=FALSE)
247s + bw.lppl(X, sigma=sug, distance="path", shortcut=FALSE)
247s + }
247s + if(ALWAYS) {
247s + #' inhomogeneous K and g
247s + SD <- split(Xdend)
247s + DT <- density(SD[["thin"]], 100, distance="euclidean")
247s + DS <- density(SD[["stubby"]], 100, distance="euclidean")
247s + Kii <- linearKcross.inhom(dendrite, "thin", "thin", DT, DT)
247s + Kij <- linearKcross.inhom(dendrite, "thin", "stubby", DT, DS,
247s + correction="none", ratio=TRUE)
247s + gii <- linearpcfcross.inhom(dendrite, "thin", "thin", DT, DT)
247s + gij <- linearpcfcross.inhom(dendrite, "thin", "stubby", DT, DS,
247s + correction="none", ratio=TRUE)
247s + }
247s + if(FULLTEST) {
247s + Kx <- linearKcross.inhom(dendrite[1], "thin", "stubby", DT, DS)
247s + gx <- linearpcfcross.inhom(dendrite[1], "thin", "stubby", DT, DS)
247s + }
247s +
247s + if(FULLTEST) {
247s + ## infrastructure for density.lpp
247s + L <- domain(Xchic)
247s + A <- resolve.heat.steps(100, L=L, dx=1)
247s + B <- resolve.heat.steps(100, L=L, dt=0.2)
247s + C <- resolve.heat.steps(100, L=L, niter=1e5)
247s + C <- resolve.heat.steps(100, L=L, niter=1e5, nsave=3)
247s + C <- resolve.heat.steps(100, L=L, niter=1e5, nsave=Inf)
247s + D <- resolve.heat.steps(100, L=L, dx=1, dt=0.2)
247s + E <- resolve.heat.steps(500, L=L, dt=0.5, iterMax=2e5)
247s + A <- resolve.heat.steps(1, L=simplenet, dt=2, dx=0.05)
247s + B <- resolve.heat.steps(1, L=simplenet)
247s + C <- resolve.heat.steps(1, L=simplenet, finespacing=FALSE)
247s + D <- resolve.heat.steps(1, seglengths=rep(0.7, 5), maxdegree=4, AMbound=7)
247s + ## vertices on boundary
247s + L <- simplenet
247s + L <- L[boundingbox(vertices(L))]
247s + X <- as.lpp(0.41259, 0.6024, L=L)
247s + D <- density(X, 0.1)
247s + }
247s +
247s + if(FULLTEST) {
247s + #' multitype
247s + #' density.splitppx
247s + Z <- split(Xchic)[1:3]
247s + D <- density(Z, 7)
247s + #' relrisk.lpp for 3 types
247s + U <- do.call(superimpose, Z)
247s + A <- relrisk(U, 20, control=1, relative=TRUE)
247s + A <- relrisk(U, 20, control=1, relative=TRUE, at="points")
247s + #' relrisk.lpp for 2 types
247s + V <- do.call(superimpose, Z[1:2])
247s + A <- relrisk(V, 20, control=2, casecontrol=FALSE) # issues warning
247s + B <- relrisk(V, 20, control="assault", case=2, relative=TRUE)
247s + D <- relrisk(V, 20, control=1, case="burglary", relative=TRUE, at="points")
247s + #' bw.relrisklpp
247s + b1 <- bw.relrisklpp(V, hmax=3, fudge=0.01,
247s + method="leastsquares", reference="sigma")
247s + b2 <- bw.relrisklpp(V, hmax=3, fudge=0.01,
247s + method="KelsallDiggle", reference="uniform")
247s + }
247s +
247s + if(FULLTEST) {
247s + #' pairs.linim
247s + Z <- density(Xsimple, 0.5, distance="euclidean")
247s + pairs(solist(Z))
247s + pairs(solist(A=Z))
247s + U <- density(as.ppp(Xsimple), 0.5)
247s + pairs(solist(U, Z))
247s + pairs(solist(Z, U))
247s + }
247s +
247s + if(FULLTEST) {
247s + #' complex-valued functions and images
247s + f <- function(x,y,seg,tp) { x + y * 1i }
247s + g <- linfun(f, simplenet)
247s + h <- as.linim(g)
247s + plot(Re(h))
247s + plot(h)
247s + plot(g)
247s + integral(h)
247s + integral(g)
247s + }
247s +
247s + ## 'lixellate' - involves C code
247s + if(ALWAYS) {
247s + ## Cases where no subdivision occurs
247s + P <- runiflpp(4, simplenet)
247s + A <- lixellate(P, nsplit=1)
247s + B <- lixellate(P, eps=2)
247s + ## bug in 'lixellate' (Jakob Gulddahl Rasmussen)
247s + X <- ppp(c(0,1), c(0,0), owin())
247s + L <- linnet(X, edges = matrix(1:2, ncol=2))
247s + Y <- lpp(X, L)
247s + ## The left end point is OK
247s + lixellate(Y[1], nsplit=30)
247s + d <- density(Y[1], .1)
247s + ## The right end point gave an error
247s + lixellate(Y[2], nsplit=30)
247s + d <- density(Y[2], .1)
247s + }
247s +
247s + if(FULLTEST) {
247s + ## make some bad data and repair it
247s + L <- simplenet
247s + ## reverse edges
247s + a <- L$from[c(FALSE,TRUE)]
247s + L$from[c(FALSE,TRUE)] <- L$to[c(FALSE,TRUE)]
247s + L$to[c(FALSE,TRUE)] <- a
247s + ## duplicate edges
247s + ns <- nsegments(L)
247s + ii <- c(seq_len(ns), 2)
247s + L$from <- L$from[ii]
247s + L$to <- L$to[ii]
247s + L$lines <- L$lines[ii]
247s + ##
247s + Y <- repairNetwork(L)
247s + ## add points
247s + X <- runiflpp(4, L)
247s + Z <- repairNetwork(X)
247s + }
247s +
247s + if(FULLTEST) {
247s + #' random generation bugs and code blocks
247s + A <- runiflpp(5, simplenet, nsim=2)
247s + D <- density(A[[1]], 0.3)
247s + B <- rpoislpp(D, nsim=2)
247s + stopifnot(is.multitype(rlpp(c(10,5), list(a=D,b=D))))
247s + stopifnot(is.multitype(rlpp(5, list(a=D,b=D))))
247s + stopifnot(is.multitype(rlpp(c(10,5), D)))
247s + }
247s +
247s + ## rhohat.lppm
247s + if(FULLTEST) {
247s + fut <- lppm(Xspid ~ 1)
247s + rx <- rhohat(fut, "x")
247s + Z <- linfun(function(x,y,seg,tp) { x }, domain(Xspid))
247s + rZ <- rhohat(fut, Z)
247s + U <- predict(rx)
247s + U <- predict(rZ)
247s + Y <- simulate(rx)
247s + Y <- simulate(rZ)
247s + futm <- lppm(Xchic ~ x + marks)
247s + ry <- rhohat(futm, "y")
247s + U <- predict(ry)
247s + Y <- simulate(ry)
247s + }
247s +
247s + if(ALWAYS) {
247s + #' new code for pairdist.lpp
247s + X <- runiflpp(10, simplenet)
247s + dC <- pairdist(X, method="C")
247s + dI <- pairdist(X, method="interpreted")
247s + if(max(abs(dC - dI)) > 0.01)
247s + stop("pairdist.lpp: disagreement between C and R")
247s + XS <- as.lpp(X, sparse=TRUE)
247s + dS <- pairdist(XS)
247s + if(max(abs(dC - dS)) > 0.01)
247s + stop("pairdist.lpp: disagreement between sparse and non-sparse C")
247s + dU <- pairdist(XS, method="testsymm") # secret option
247s + if(max(abs(dS - dU)) > 0.01)
247s + stop("pairdist.lpp: disagreement between symmetric and asymmetric")
247s +
247s + #' new code for crossdist.lpp
247s + #' non-sparse
247s + v <- split(Xchic)
247s + X <- v$cartheft
247s + Y <- v$burglary
247s + dC <- crossdist(X, Y, method="C")
247s + dI <- crossdist(X, Y, method="interpreted")
247s + if(max(abs(dC - dI)) > 0.01)
247s + stop("crossdist.lpp (non-sparse): disagreement between C and R")
247s + #' convert to sparse
247s + Chuck <- as.lpp(Xchic, sparse=TRUE)
247s + V <- split(Chuck)
247s + X <- V$cartheft
247s + Y <- V$burglary
247s + dS <- crossdist(X, Y)
247s + if(max(abs(dS - dC)) > 0.01)
247s + stop("crossdist.lpp: disagreement between sparse and non-sparse")
247s + #' disconnected
247s + L <- thinNetwork(simplenet, retainedges = -c(3,8))
247s + X <- runiflpp(20, L)
247s + Y <- runiflpp(15, L)
247s + d <- crossdist(X,Y)
247s +
247s + ## example where the path is very long (covers a previous bug)
247s + X <- dendrite[c(349,563)]
247s + a <- pairdist(X, method="testsymm")
247s + if(max(abs(a-t(a))) > 0.01)
247s + stop("pairdist.lpp: asymmetry for long distances")
247s + b <- pairdist(as.lpp(X, sparse=FALSE))
247s + if(max(abs(a-b)) > 0.01)
247s + stop("pairdist.lpp: disagreement sparse vs non-sparse for long distance")
247s + }
247s + })
248s sigma = 0.05
248s Network:
248s total length = 2.90485162043096
248s number of edges = 10
248s average nonzero edge length = 0.290485162043096
248s shortest nonzero edge length = 0.150146561419501
248s Determine dx by default rule
248s Mean Nonzero Edge Length/ 30 = 0.00968283873476987
248s Total Network Length/ 100 = 0.0290485162043096
248s Min Nonzero Edge Length/3 = 0.0500488538065003
248s Minimum of the above = 0.00968283873476987
248s Fine spacing rule: dx = 0.00968283873476987
248s Rounded total number of lixels = 300
248s Adjusted dx = 0.00968283873476987
248s Applying full set of constraints
248s dt (determined by all constraints) = 1.27242139521974e-05
248s Number of iterations (determined from dt) = 98
248s Updated dt = 1.27551020408163e-05
248s alpha = 0.136043732774807
248s Final values:
248s Time step dt = 1.27551020408163e-05
248s Sample spacing dx = 0.00968283873476987
248s Number of iterations niter = 98
248s Number of states saved nsave = 1
248s Subdividing network ...Done.
248s New network:
248s Linear network with 299 vertices and 299 lines
248s Vertices are marked
248s Enclosing window: rectangle = [0, 1] x [0, 1] units
248s Constructing update matrix A ..Done.
248s alpha = 0.136043732774807
248s Building initial state ..Done.
248s Running iterative solver ..Done.
248s Mapping results to spatial location ..Done.
248s sigma = 0.05
248s Network:
248s total length = 2.90485162043096
248s number of edges = 10
248s average nonzero edge length = 0.290485162043096
248s shortest nonzero edge length = 0.150146561419501
248s Determine dx by default rule
248s Mean Nonzero Edge Length/ 30 = 0.00968283873476987
248s Total Network Length/ 100 = 0.0290485162043096
248s Min Nonzero Edge Length/3 = 0.0500488538065003
248s Minimum of the above = 0.00968283873476987
248s Fine spacing rule: dx = 0.00968283873476987
248s Rounded total number of lixels = 300
248s Adjusted dx = 0.00968283873476987
248s Applying full set of constraints
248s dt (determined by all constraints) = 1.27242139521974e-05
248s Number of iterations (determined from dt) = 98
248s Updated dt = 1.27551020408163e-05
248s alpha = 0.136043732774807
248s Final values:
248s Time step dt = 1.27551020408163e-05
248s Sample spacing dx = 0.00968283873476987
248s Number of iterations niter = 98
248s Number of states saved nsave = 1
248s Subdividing network ...Done.
248s New network:
248s Linear network with 299 vertices and 299 lines
248s Vertices are marked
248s Enclosing window: rectangle = [0, 1] x [0, 1] units
248s Constructing update matrix A ..Done.
248s alpha = 0.136043732774807
248s Building initial state ..Done.
248s finenet:
248s Linear network with 299 vertices and 299 lines
248s Vertices are marked
248s Enclosing window: rectangle = [0, 1] x [0, 1] units
248s lixelmap:
248s int [1:10] 217 218 97 98 286 287 296 297 146 147
248s lixelweight:
248s num [1:10] 4.04 99.24 63.78 39.5 96.53 ...
248s Processing 5 points ... 1, 2, 3, 4,
248s 5.
250s >
250s > reset.spatstat.options()
250s >
250s > #'
250s > #' lppmodels.R
250s > #'
250s > #' Tests of lppm and class support
250s > #'
250s > #' $Revision: 1.3 $ $Date: 2025/01/18 03:43:52 $
250s > #'
250s >
250s >
250s > local({
250s + if(ALWAYS) {
250s + fit0 <- lppm(spiders)
250s + fit1 <- lppm(spiders ~ x)
250s + summary(fit0)
250s + summary(fit1)
250s + pseudoR2(fit0)
250s + pseudoR2(fit1)
250s + }
250s + if(FULLTEST) {
250s + fit2 <- lppm(chicago ~ x+y)
250s + summary(fit2)
250s + pseudoR2(fit2)
250s + }
250s + if(ALWAYS) {
250s + X <- runiflpp(10, simplenet)
250s + Z <- distfun(runiflpp(10, simplenet))
250s + fit3 <- lppm(X ~ Z)
250s + summary(fit3)
250s + pseudoR2(fit3)
250s + }
250s +
250s + Window(fit1)
250s +
250s + if(ALWAYS) a <- model.images(fit0)
250s + if(FULLTEST) {
250s + a <- model.images(fit1)
250s + a <- model.images(fit2)
250s + a <- model.images(fit3)
250s + }
250s + if(ALWAYS)
250s + b <- model.matrix(fit0)
250s + if(FULLTEST) {
250s + b <- model.matrix(fit1)
250s + b <- model.matrix(fit2)
250s + b <- model.matrix(fit3)
250s + }
250s +
250s + if(ALWAYS)
250s + is.multitype(fit0)
250s + if(FULLTEST) {
250s + is.multitype(fit1)
250s + is.multitype(fit2)
250s + is.multitype(fit3)
250s + }
250s +
250s + if(ALWAYS) fit0e <- emend(fit0)
250s + if(FULLTEST) {
250s + fit1e <- emend(fit1)
250s + fit2e <- emend(fit2)
250s + fit3e <- emend(fit3)
250s + }
250s +
250s + if(FULLTEST) {
250s + #' handling of lintess covariates
250s + df <- data.frame(seg=1:10, t0=0, t1=1, tile=rep(c("A", "B"), 5))
250s + V <- lintess(simplenet, df)
250s + X <- runiflpp(20, simplenet)
250s + mod <- lppm(X ~ V)
250s + Lam <- predict(mod)
250s + }
250s +
250s + #' fundamental utilities:
250s + #' spatialCovariateEvidence (was: evalCovar)
250s + ycoord <- function(x,y) { y }
250s + if(ALWAYS) YS <- as.linim(ycoord, L=domain(spiders))
250s + if(FULLTEST) YC <- as.linim(ycoord, L=domain(chicago))
250s +
250s + if(ALWAYS) aT <- spatialCovariateEvidence(fit1, YS, interpolate=TRUE)
250s + if(FULLTEST) {
250s + aF <- spatialCovariateEvidence(fit1, YS, interpolate=FALSE)
250s + dT <- spatialCovariateEvidence(fit1, ycoord, interpolate=TRUE)
250s + dF <- spatialCovariateEvidence(fit1, ycoord, interpolate=FALSE)
250s + bT <- spatialCovariateEvidence(fit2, YC, interpolate=TRUE)
250s + bF <- spatialCovariateEvidence(fit2, YC, interpolate=FALSE)
250s + cT <- spatialCovariateEvidence(fit2, ycoord, interpolate=TRUE)
250s + cF <- spatialCovariateEvidence(fit2, ycoord, interpolate=FALSE)
250s + }
250s +
250s + })
250s Point process model on linear network
250s Fitted to point pattern dataset ‘spiders’
250s Internal fit: Point process model
250s Fitted to data: linequad(spiders, eps = NULL, nd = 1000, random = FALSE)
250s Fitting method: maximum likelihood (Berman-Turner approximation)
250s Model was fitted using glm()
250s Algorithm converged
250s Call:
250s ppm.quad(Q = linequad(spiders, eps = NULL, nd = 1000, random = FALSE),
250s method = "mpl", forcefit = TRUE)
250s Edge correction: “border”
250s [border correction distance r = 0 ]
250s --------------------------------------------------------------------------------
250s Quadrature scheme (Berman-Turner) = data + dummy + weights
250s
250s Data pattern:
250s Planar point pattern: 48 points
250s Average intensity 3.79e-05 points per square mm
250s Window: rectangle = [0, 1125] x [0, 1125] mm
250s Window area = 1265620 square mm
250s Unit of length: 1 mm
250s
250s Dummy quadrature points:
250s Equally spaced along each segment at spacing eps = 20.22 mm
250s Original parameter nd = 1000
250s
250s Planar point pattern: 1198 points
250s Average intensity 0.000947 points per square mm
250s Window: rectangle = [0, 1125] x [0, 1125] mm
250s Window area = 1265620 square mm
250s Unit of length: 1 mm
250s Quadrature weights:
250s Counting weights based on segment length
250s All weights:
250s range: [3.12, 20.2] total: 20200
250s Weights on data points:
250s range: [4.78, 10.1] total: 466
250s Weights on dummy points:
250s range: [3.12, 20.2] total: 19800
250s --------------------------------------------------------------------------------
250s FITTED :
250s
250s Stationary Poisson process
250s
250s ---- Intensity: ----
250s
250s
250s Uniform intensity:
250s [1] 0.002374034
250s
250s Estimate S.E. CI95.lo CI95.hi Ztest Zval
250s (Intercept) -6.043165 0.1443376 -6.326061 -5.760268 *** -41.86827
250s
250s ----------- gory details -----
250s
250s Fitted regular parameters (theta):
250s (Intercept)
250s -6.043165
250s
250s Fitted exp(theta):
250s (Intercept)
250s 0.002374034
250s
250s Original data: spiders
250s Domain: Linear network with 156 vertices and 203 lines
250s Total length 20218.75 mm
250s Maximum vertex degree: 3
250s [Non-sparse matrix representation]
250s Network is connected
250s Diameter: 2575 mm
250s Bounding radius: 1306.25 mm
250s Numerical tolerance: 0.00625 mm
250s Enclosing window: rectangle = [0, 1125] x [0, 1125] mm
250s Point process model on linear network
250s Fitted to point pattern dataset ‘spiders’
250s Internal fit: Point process model
250s Fitted to data: linequad(spiders, eps = NULL, nd = 1000, random = FALSE)
250s Fitting method: maximum likelihood (Berman-Turner approximation)
250s Model was fitted using glm()
250s Algorithm converged
250s Call:
250s ppm.quad(Q = linequad(spiders, eps = NULL, nd = 1000, random = FALSE),
250s trend = ~x, interaction = NULL, data = NULL, method = "mpl",
250s forcefit = TRUE)
250s Edge correction: “border”
250s [border correction distance r = 0 ]
250s --------------------------------------------------------------------------------
250s Quadrature scheme (Berman-Turner) = data + dummy + weights
250s
250s Data pattern:
250s Planar point pattern: 48 points
250s Average intensity 3.79e-05 points per square mm
250s Window: rectangle = [0, 1125] x [0, 1125] mm
250s Window area = 1265620 square mm
250s Unit of length: 1 mm
250s
250s Dummy quadrature points:
250s Equally spaced along each segment at spacing eps = 20.22 mm
250s Original parameter nd = 1000
250s
250s Planar point pattern: 1198 points
250s Average intensity 0.000947 points per square mm
250s Window: rectangle = [0, 1125] x [0, 1125] mm
250s Window area = 1265620 square mm
250s Unit of length: 1 mm
250s Quadrature weights:
250s Counting weights based on segment length
250s All weights:
250s range: [3.12, 20.2] total: 20200
250s Weights on data points:
250s range: [4.78, 10.1] total: 466
250s Weights on dummy points:
250s range: [3.12, 20.2] total: 19800
250s --------------------------------------------------------------------------------
250s FITTED :
250s
250s Nonstationary Poisson process
250s
250s ---- Intensity: ----
250s
250s Log intensity: ~x
250s
250s Fitted trend coefficients:
250s (Intercept) x
250s -6.4845961867 0.0007423366
250s
250s Estimate S.E. CI95.lo CI95.hi Ztest
250s (Intercept) -6.4845961867 0.3179208001 -7.1077095048 -5.861482869 ***
250s x 0.0007423366 0.0004467129 -0.0001332047 0.001617878
250s Zval
250s (Intercept) -20.396892
250s x 1.661775
250s
250s ----------- gory details -----
250s
250s Fitted regular parameters (theta):
250s (Intercept) x
250s -6.4845961867 0.0007423366
250s
250s Fitted exp(theta):
250s (Intercept) x
250s 0.001526777 1.000742612
250s
250s Original data: spiders
250s Domain: Linear network with 156 vertices and 203 lines
250s Total length 20218.75 mm
250s Maximum vertex degree: 3
250s [Non-sparse matrix representation]
250s Network is connected
250s Diameter: 2575 mm
250s Bounding radius: 1306.25 mm
250s Numerical tolerance: 0.00625 mm
250s Enclosing window: rectangle = [0, 1125] x [0, 1125] mm
250s Point process model on linear network
250s Fitted to point pattern dataset ‘X’
250s Internal fit: Point process model
250s Fitted to data: linequad(X, eps = NULL, nd = 1000, random = FALSE)
250s Fitting method: maximum likelihood (Berman-Turner approximation)
250s Model was fitted using glm()
250s Algorithm converged
250s Call:
250s ppm.quad(Q = linequad(X, eps = NULL, nd = 1000, random = FALSE),
250s trend = ~Z, interaction = NULL, data = NULL, method = "mpl",
250s forcefit = TRUE)
250s Edge correction: “border”
250s [border correction distance r = 0 ]
250s --------------------------------------------------------------------------------
250s Quadrature scheme (Berman-Turner) = data + dummy + weights
250s
250s Data pattern:
250s Planar point pattern: 10 points
250s Average intensity 10 points per square unit
250s Window: rectangle = [0, 1] x [0, 1] units
250s Window area = 1 square unit
250s
250s Dummy quadrature points:
250s Equally spaced along each segment at spacing eps = 0.002905 units
250s Original parameter nd = 1000
250s
250s Planar point pattern: 1010 points
250s Average intensity 1010 points per square unit
250s Window: rectangle = [0, 1] x [0, 1] units
250s Window area = 1 square unit
250s Quadrature weights:
250s Counting weights based on segment length
250s All weights:
250s range: [0.000763, 0.0029] total: 2.9
250s Weights on data points:
250s range: [0.000967, 0.00145] total: 0.014
250s Weights on dummy points:
250s range: [0.000763, 0.0029] total: 2.89
250s --------------------------------------------------------------------------------
250s FITTED :
250s
250s Nonstationary Poisson process
250s
250s ---- Intensity: ----
250s
250s Log intensity: ~Z
250s Model depends on external covariate ‘Z’
250s Covariates provided:
250s Z: function(...)
250s
250s Fitted trend coefficients:
250s (Intercept) Z
250s 0.4826918 5.4484762
250s
250s Estimate S.E. CI95.lo CI95.hi Ztest Zval
250s (Intercept) 0.4826918 0.634517 -0.7609386 1.726322 0.7607233
250s Z 5.4484762 3.430992 -1.2761437 12.173096 1.5880180
250s
250s ----------- gory details -----
250s
250s Fitted regular parameters (theta):
250s (Intercept) Z
250s 0.4826918 5.4484762
250s
250s Fitted exp(theta):
250s (Intercept) Z
250s 1.62043 232.40375
250s
250s Original data: X
250s Domain: Linear network with 10 vertices and 10 lines
250s Total length 2.904852 units
250s Maximum vertex degree: 4
250s [Non-sparse matrix representation]
250s Network is connected
250s Diameter: 1.248943 units
250s Bounding radius: 0.7793609 units
250s Numerical tolerance: 0.0001501466 units
250s Enclosing window: rectangle = [0, 1] x [0, 1] units
250s >
250s >
250s BEGIN TEST testsMtoZ.R
250s
250s R version 4.4.3 (2025-02-28) -- "Trophy Case"
250s Copyright (C) 2025 The R Foundation for Statistical Computing
250s Platform: x86_64-pc-linux-gnu
250s
250s R is free software and comes with ABSOLUTELY NO WARRANTY.
250s You are welcome to redistribute it under certain conditions.
250s Type 'license()' or 'licence()' for distribution details.
250s
250s R is a collaborative project with many contributors.
250s Type 'contributors()' for more information and
250s 'citation()' on how to cite R or R packages in publications.
250s
250s Type 'demo()' for some demos, 'help()' for on-line help, or
250s 'help.start()' for an HTML browser interface to help.
250s Type 'q()' to quit R.
250s
250s > #'
250s > #' Header for all (concatenated) test files
250s > #'
250s > #' Require spatstat.linnet
250s > #' Obtain environment variable controlling tests.
250s > #'
250s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $
250s >
250s > require(spatstat.linnet)
250s Loading required package: spatstat.linnet
250s Loading required package: spatstat.data
253s Loading required package: spatstat.univar
253s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0)
253s > ALWAYS <- TRUE
253s > cat(paste("--------- Executing",
253s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of",
253s + "test code -----------\n"))
253s --------- Executing **RESTRICTED** subset of test code -----------
253s > ##
253s > ## tests/segments.R
253s > ## Tests of psp class and related code
253s > ## [SEE ALSO: tests/xysegment.R]
253s > ##
253s > ## $Revision: 1.33 $ $Date: 2022/05/22 08:39:47 $
253s >
253s >
253s >
253s >
253s > if(FULLTEST) {
253s + local({
253s + ## more tests of lppm code
253s + fit <- lppm(unmark(chicago) ~ polynom(x,y,2))
253s + Z <- predict(fit)
253s + })
253s + }
253s >
253s > #
253s > # tests/undoc.R
253s > #
253s > # $Revision: 1.16 $ $Date: 2020/11/02 07:06:49 $
253s > #
253s > # Test undocumented hacks, experimental code, etc
253s >
253s >
253s > if(FULLTEST) {
253s + local({
253s + ## linim helper functions
253s + df <- pointsAlongNetwork(simplenet, 0.2)
253s + })
253s + }
253s >
253s > ##
253s > ## tests/updateppm.R
253s > ##
253s > ## Check validity of update.ppm
253s > ##
253s > ## $Revision: 1.8 $ $Date: 2022/10/23 01:19:19 $
253s >
253s > local({
253s +
253s + if(ALWAYS) {
253s + ## test update.lppm
253s + X <- runiflpp(20, simplenet)
253s + fit0 <- lppm(X ~ 1)
253s + fit1 <- update(fit0, ~ x)
253s + anova(fit0, fit1, test="LR")
253s + cat("update.lppm(fit, ~trend) is OK\n")
253s + fit2 <- update(fit0, . ~ x)
253s + anova(fit0, fit2, test="LR")
253s + cat("update.lppm(fit, . ~ trend) is OK\n")
253s + }
253s + })
253s update.lppm(fit, ~trend) is OK
253s update.lppm(fit, . ~ trend) is OK
253s > ##
253s > ## tests/xysegment.R
253s > ## [SEE ALSO tests/segments.R]
253s > ##
253s > ## Test weird problems and boundary cases for line segment code
253s > ##
253s > ## $Version$ $Date: 2022/10/23 01:21:09 $
253s > ##
253s >
253s >
253s > if(FULLTEST) local({ S <- as.psp(simplenet) })
253s >
253s >
253s spatstat.univar 3.1-1
253s Loading required package: spatstat.geom
253s spatstat.geom 3.3-5
253s Loading required package: spatstat.random
253s spatstat.random 3.3-2
253s Loading required package: spatstat.explore
253s Loading required package: nlme
253s spatstat.explore 3.3-4
253s Loading required package: spatstat.model
253s Loading required package: rpart
253s spatstat.model 3.3-4
253s spatstat.linnet 3.2-5
253s autopkgtest [23:52:47]: test run-unit-test: -----------------------]
254s autopkgtest [23:52:49]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - -
254s run-unit-test PASS
254s autopkgtest [23:52:49]: test pkg-r-autopkgtest: preparing testbed
320s autopkgtest [23:53:55]: testbed dpkg architecture: amd64
320s autopkgtest [23:53:55]: testbed apt version: 2.9.31ubuntu1
320s autopkgtest [23:53:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup
320s autopkgtest [23:53:55]: testbed release detected to be: plucky
321s autopkgtest [23:53:56]: updating testbed package index (apt update)
321s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
322s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
322s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
322s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
322s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB]
322s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB]
322s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB]
322s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB]
322s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB]
322s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B]
322s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B]
322s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB]
322s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB]
322s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB]
322s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB]
322s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B]
322s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B]
322s Fetched 1265 kB in 1s (1354 kB/s)
323s Reading package lists...
324s Reading package lists...
324s Building dependency tree...
324s Reading state information...
324s Calculating upgrade...
324s Calculating upgrade...
324s The following package was automatically installed and is no longer required:
324s libnl-genl-3-200
324s Use 'sudo apt autoremove' to remove it.
324s The following NEW packages will be installed:
324s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10
324s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic
324s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic
324s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids
324s The following packages will be upgraded:
324s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu
324s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base
324s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools
324s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0
324s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1
324s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0
324s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1
324s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64
324s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6
324s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200
324s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib
324s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2
324s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0
324s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2
324s linux-firmware linux-generic linux-headers-generic linux-headers-virtual
324s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common
324s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term
324s parted pci.ids pciutils pinentry-curses python-apt-common python3
324s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi
324s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal
324s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13
324s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd
324s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd
324s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail
324s xz-utils
324s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded.
324s Need to get 829 MB of archives.
324s After this operation, 325 MB of additional disk space will be used.
324s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB]
325s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB]
325s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB]
325s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB]
325s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB]
325s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB]
325s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB]
325s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB]
325s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB]
325s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB]
325s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB]
325s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB]
325s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB]
325s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB]
325s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB]
325s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB]
325s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB]
325s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB]
325s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB]
325s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB]
325s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB]
325s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB]
326s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB]
326s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB]
326s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB]
326s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB]
326s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B]
326s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB]
326s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB]
326s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB]
326s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB]
326s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB]
326s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB]
326s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB]
326s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB]
326s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB]
326s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB]
326s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB]
326s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB]
326s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB]
326s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB]
326s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB]
326s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB]
326s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB]
326s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB]
326s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB]
326s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB]
326s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB]
326s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB]
326s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB]
326s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B]
326s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB]
326s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB]
326s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB]
326s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB]
326s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB]
326s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB]
326s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B]
326s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB]
326s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB]
326s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB]
326s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB]
326s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB]
326s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB]
326s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB]
326s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB]
326s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB]
326s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB]
326s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB]
326s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB]
326s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB]
326s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB]
326s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB]
326s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB]
326s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB]
326s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB]
326s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB]
326s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB]
326s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB]
326s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB]
326s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB]
326s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB]
326s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB]
326s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB]
326s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB]
326s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB]
326s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB]
327s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB]
327s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB]
327s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB]
327s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB]
327s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB]
327s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B]
327s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB]
327s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB]
327s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB]
327s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB]
327s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
327s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB]
327s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB]
327s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB]
327s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB]
327s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB]
327s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB]
327s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB]
328s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB]
328s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB]
328s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB]
328s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB]
356s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B]
356s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB]
356s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB]
356s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB]
356s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB]
356s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB]
356s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB]
356s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB]
359s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB]
360s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB]
367s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B]
367s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB]
367s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B]
367s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB]
367s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B]
367s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB]
368s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB]
368s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB]
368s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB]
368s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB]
368s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B]
368s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB]
368s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB]
368s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB]
368s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB]
368s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB]
368s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB]
368s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B]
368s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB]
369s Preconfiguring packages ...
369s Fetched 829 MB in 44s (18.9 MB/s)
369s (Reading database ...
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369s Preparing to unpack .../ncurses-bin_6.5+20250216-2_amd64.deb ...
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379s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64'
379s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64'
379s Unpacking libparted2t64:amd64 (3.6-5) over (3.6-4build1) ...
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380s Preparing to unpack .../35-libbinutils_2.44-3ubuntu1_amd64.deb ...
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380s Preparing to unpack .../47-curl_8.12.1-3ubuntu1_amd64.deb ...
380s Unpacking curl (8.12.1-3ubuntu1) over (8.12.1-2ubuntu1) ...
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381s Preparing to unpack .../53-libmm-glib0_1.23.4-0ubuntu3_amd64.deb ...
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381s Preparing to unpack .../54-htop_3.4.0-2_amd64.deb ...
381s Unpacking htop (3.4.0-2) over (3.3.0-5) ...
381s Preparing to unpack .../55-linux-firmware_20250310.git9e1370d3-0ubuntu1_amd64.deb ...
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384s Preparing to unpack .../58-initramfs-tools-bin_0.146ubuntu1_amd64.deb ...
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384s Selecting previously unselected package libdebuginfod1t64:amd64.
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384s Unpacking libdebuginfod1t64:amd64 (0.192-4) ...
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385s Selecting previously unselected package linux-modules-6.14.0-10-generic.
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391s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ...
391s Setting up media-types (13.0.0) ...
391s Installing new version of config file /etc/mime.types ...
391s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ...
391s Setting up ubuntu-kernel-accessories (1.549) ...
391s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ...
391s Setting up pci.ids (0.0~2025.03.09-1) ...
391s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ...
391s Setting up apt-utils (2.9.33) ...
391s Setting up libdebuginfod-common (0.192-4) ...
391s Setting up exfatprogs (1.2.8-1) ...
391s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ...
391s Setting up bpftool (7.6.0+6.14.0-10.10) ...
391s Setting up libestr0:amd64 (0.1.11-2) ...
391s Setting up libbrotli1:amd64 (1.1.0-2build4) ...
391s Setting up libsqlite3-0:amd64 (3.46.1-2) ...
391s Setting up dosfstools (4.2-1.2) ...
391s Setting up rsyslog (8.2412.0-2ubuntu2) ...
391s info: The user `syslog' is already a member of `adm'.
392s Setting up binutils-common:amd64 (2.44-3ubuntu1) ...
392s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ...
392s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ...
392s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ...
392s Setting up systemd (257.3-1ubuntu3) ...
392s [0;1;39m/usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring.[0m
392s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'.
392s [0;1;39m/usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring.[0m
393s Setting up libparted2t64:amd64 (3.6-5) ...
393s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64'
393s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64'
393s Setting up linux-headers-generic (6.14.0-10.10) ...
393s Setting up libjemalloc2:amd64 (5.3.0-3) ...
393s Setting up locales (2.41-1ubuntu1) ...
393s Installing new version of config file /etc/locale.alias ...
394s Generating locales (this might take a while)...
395s en_US.UTF-8... done
395s Generation complete.
395s Setting up libsframe1:amd64 (2.44-3ubuntu1) ...
395s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ...
395s Setting up apparmor (4.1.0~beta5-0ubuntu8) ...
395s Installing new version of config file /etc/apparmor.d/fusermount3 ...
395s Installing new version of config file /etc/apparmor.d/lsusb ...
395s Installing new version of config file /etc/apparmor.d/openvpn ...
396s Reloading AppArmor profiles
397s Setting up libftdi1-2:amd64 (1.5-8build1) ...
397s Setting up libglib2.0-data (2.84.0-1) ...
397s Setting up systemd-cryptsetup (257.3-1ubuntu3) ...
397s Setting up libncurses6:amd64 (6.5+20250216-2) ...
397s Setting up strace (6.13+ds-1ubuntu1) ...
397s Setting up xz-utils (5.6.4-1) ...
397s Setting up systemd-timesyncd (257.3-1ubuntu3) ...
398s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it.
398s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ...
398s Setting up udev (257.3-1ubuntu3) ...
398s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ...
400s Setting up libncursesw6:amd64 (6.5+20250216-2) ...
400s Setting up libpci3:amd64 (1:3.13.0-2) ...
400s Setting up whiptail (0.52.24-4ubuntu2) ...
400s Setting up python-apt-common (2.9.9build1) ...
400s Setting up pnp.ids (0.393-3) ...
400s Setting up libnl-3-200:amd64 (3.7.0-1) ...
400s Setting up python3.13-minimal (3.13.2-2) ...
401s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ...
401s Setting up libbinutils:amd64 (2.44-3ubuntu1) ...
401s Setting up libc-dev-bin (2.41-1ubuntu1) ...
401s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ...
401s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ...
401s Setting up rsync (3.4.1+ds1-3) ...
401s rsync.service is a disabled or a static unit not running, not starting it.
401s Setting up python3.13-gdbm (3.13.2-2) ...
401s Setting up libpython3-stdlib:amd64 (3.13.2-2) ...
401s Setting up systemd-resolved (257.3-1ubuntu3) ...
402s Setting up initramfs-tools-bin (0.146ubuntu1) ...
402s Setting up ncurses-term (6.5+20250216-2) ...
402s Setting up libctf0:amd64 (2.44-3ubuntu1) ...
402s Setting up libpython3.13:amd64 (3.13.2-2) ...
402s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
402s Setting up libdebuginfod1t64:amd64 (0.192-4) ...
402s Setting up systemd-sysv (257.3-1ubuntu3) ...
402s Setting up linux-headers-virtual (6.14.0-10.10) ...
402s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ...
402s Setting up python3.13 (3.13.2-2) ...
403s Setting up htop (3.4.0-2) ...
403s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ...
404s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic
404s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic
404s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic
404s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic
404s Setting up parted (3.6-5) ...
404s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ...
404s Setting up python3 (3.13.2-2) ...
405s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ...
405s Setting up python3-markupsafe (2.1.5-1build4) ...
405s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ...
407s Setting up libnl-route-3-200:amd64 (3.7.0-1) ...
407s Setting up hwdata (0.393-3) ...
407s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
407s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ...
407s No schema files found: doing nothing.
407s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ...
407s Setting up linux-perf (6.14.0-10.10) ...
407s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ...
407s Setting up pciutils (1:3.13.0-2) ...
407s Setting up python3-rpds-py (0.21.0-2ubuntu2) ...
407s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ...
407s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ...
407s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ...
407s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ...
407s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ...
407s Setting up curl (8.12.1-3ubuntu1) ...
407s Setting up linux-image-virtual (6.14.0-10.10) ...
407s Setting up initramfs-tools-core (0.146ubuntu1) ...
407s Setting up linux-tools-common (6.14.0-10.10) ...
407s Setting up python3-systemd (235-1build6) ...
407s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ...
407s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ...
407s Setting up linux-image-generic (6.14.0-10.10) ...
407s Setting up python3-dbus (1.3.2-5build5) ...
407s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ...
407s Setting up initramfs-tools (0.146ubuntu1) ...
407s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ...
407s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ...
407s update-initramfs: deferring update (trigger activated)
407s Setting up linux-generic (6.14.0-10.10) ...
407s Setting up ubuntu-minimal (1.549) ...
407s Setting up python3-apt (2.9.9build1) ...
407s Setting up python3-bcrypt (4.2.0-2.1build1) ...
407s Setting up python3-yaml (6.0.2-1build2) ...
408s Setting up libfwupd3:amd64 (2.0.6-4) ...
408s Setting up python3-lazr.uri (1.0.6-6) ...
408s Setting up binutils (2.44-3ubuntu1) ...
408s Setting up ubuntu-standard (1.549) ...
408s Setting up cloud-init-base (25.1-0ubuntu3) ...
409s Setting up linux-virtual (6.14.0-10.10) ...
409s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ...
409s Setting up python3-gi (3.50.0-4build1) ...
409s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ...
409s Setting up fwupd (2.0.6-4) ...
410s fwupd-refresh.service is a disabled or a static unit not running, not starting it.
410s fwupd.service is a disabled or a static unit not running, not starting it.
410s Setting up cloud-init (25.1-0ubuntu3) ...
410s Processing triggers for man-db (2.13.0-1) ...
411s Processing triggers for dbus (1.16.2-1ubuntu1) ...
411s Processing triggers for shared-mime-info (2.4-5) ...
411s Warning: program compiled against libxml 212 using older 209
412s Processing triggers for libc-bin (2.41-1ubuntu1) ...
412s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ...
412s /etc/kernel/postinst.d/initramfs-tools:
412s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic
412s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
421s /etc/kernel/postinst.d/zz-update-grub:
421s Sourcing file `/etc/default/grub'
421s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
421s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
421s Generating grub configuration file ...
421s Found linux image: /boot/vmlinuz-6.14.0-10-generic
421s Found initrd image: /boot/initrd.img-6.14.0-10-generic
421s Found linux image: /boot/vmlinuz-6.12.0-16-generic
421s Found initrd image: /boot/initrd.img-6.12.0-16-generic
421s Found linux image: /boot/vmlinuz-6.11.0-8-generic
421s Found initrd image: /boot/initrd.img-6.11.0-8-generic
422s Warning: os-prober will not be executed to detect other bootable partitions.
422s Systems on them will not be added to the GRUB boot configuration.
422s Check GRUB_DISABLE_OS_PROBER documentation entry.
422s Adding boot menu entry for UEFI Firmware Settings ...
422s done
422s Processing triggers for initramfs-tools (0.146ubuntu1) ...
422s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic
422s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
432s Reading package lists...
433s Building dependency tree...
433s Reading state information...
433s Solving dependencies...
433s The following packages will be REMOVED:
433s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib*
433s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
433s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic*
433s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic*
433s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic*
433s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8*
433s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16*
433s linux-tools-6.12.0-16-generic*
433s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded.
433s After this operation, 545 MB disk space will be freed.
433s (Reading database ...
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 148643 files and directories currently installed.)
433s Removing libnl-genl-3-200:amd64 (3.7.0-1) ...
433s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
433s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
433s Removing libpython3.12t64:amd64 (3.12.9-1) ...
433s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ...
433s Removing libnsl2:amd64 (1.3.0-3build3) ...
433s Removing libpython3.12-minimal:amd64 (3.12.9-1) ...
433s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
434s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
436s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ...
436s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ...
438s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ...
439s /etc/kernel/postrm.d/initramfs-tools:
439s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic
439s /etc/kernel/postrm.d/zz-update-grub:
439s Sourcing file `/etc/default/grub'
439s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
439s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
439s Generating grub configuration file ...
439s Found linux image: /boot/vmlinuz-6.14.0-10-generic
439s Found initrd image: /boot/initrd.img-6.14.0-10-generic
439s Found linux image: /boot/vmlinuz-6.12.0-16-generic
439s Found initrd image: /boot/initrd.img-6.12.0-16-generic
439s Warning: os-prober will not be executed to detect other bootable partitions.
439s Systems on them will not be added to the GRUB boot configuration.
439s Check GRUB_DISABLE_OS_PROBER documentation entry.
439s Adding boot menu entry for UEFI Firmware Settings ...
439s done
439s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ...
439s W: Removing the running kernel
439s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic
439s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic
440s /etc/kernel/postrm.d/initramfs-tools:
440s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic
440s /etc/kernel/postrm.d/zz-update-grub:
440s Sourcing file `/etc/default/grub'
440s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
440s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
440s Generating grub configuration file ...
440s Found linux image: /boot/vmlinuz-6.14.0-10-generic
440s Found initrd image: /boot/initrd.img-6.14.0-10-generic
440s Warning: os-prober will not be executed to detect other bootable partitions.
440s Systems on them will not be added to the GRUB boot configuration.
440s Check GRUB_DISABLE_OS_PROBER documentation entry.
440s Adding boot menu entry for UEFI Firmware Settings ...
440s done
440s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
440s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ...
442s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ...
442s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ...
442s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ...
442s Processing triggers for libc-bin (2.41-1ubuntu1) ...
442s (Reading database ...
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 76972 files and directories currently installed.)
442s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ...
442s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ...
442s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ...
442s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ...
442s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed
442s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
442s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ...
442s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty
442s autopkgtest [23:55:57]: upgrading testbed (apt dist-upgrade and autopurge)
443s Reading package lists...
443s Building dependency tree...
443s Reading state information...
443s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
443s Starting 2 pkgProblemResolver with broken count: 0
443s Done
444s Entering ResolveByKeep
444s
444s Calculating upgrade...
444s The following packages will be upgraded:
444s libc-bin libc-dev-bin libc6 libc6-dev locales
444s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
444s Need to get 10.5 MB of archives.
444s After this operation, 1024 B of additional disk space will be used.
444s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB]
445s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB]
445s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB]
445s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB]
445s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB]
446s Preconfiguring packages ...
446s Fetched 10.5 MB in 1s (7781 kB/s)
446s (Reading database ...
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(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 76968 files and directories currently installed.)
446s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ...
446s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
446s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ...
446s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
446s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ...
446s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
447s Setting up libc6:amd64 (2.41-1ubuntu2) ...
447s (Reading database ...
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(Reading database ... 80%
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 76968 files and directories currently installed.)
447s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ...
447s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
447s Setting up libc-bin (2.41-1ubuntu2) ...
447s (Reading database ...
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 76968 files and directories currently installed.)
447s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
447s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
447s Setting up locales (2.41-1ubuntu2) ...
448s Generating locales (this might take a while)...
449s en_US.UTF-8... done
449s Generation complete.
449s Setting up libc-dev-bin (2.41-1ubuntu2) ...
449s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ...
449s Processing triggers for man-db (2.13.0-1) ...
450s Processing triggers for systemd (257.3-1ubuntu3) ...
450s Reading package lists...
451s Building dependency tree...
451s Reading state information...
451s Starting pkgProblemResolver with broken count: 0
451s Starting 2 pkgProblemResolver with broken count: 0
451s Done
451s Solving dependencies...
451s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
452s autopkgtest [23:56:07]: rebooting testbed after setup commands that affected boot
477s Reading package lists...
477s Building dependency tree...
477s Reading state information...
478s Starting pkgProblemResolver with broken count: 0
478s Starting 2 pkgProblemResolver with broken count: 0
478s Done
478s The following NEW packages will be installed:
478s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu
478s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
478s g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14
478s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14
478s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8
478s libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev
478s libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev libgfortran5
478s libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23
478s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8
478s libjpeg8-dev liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3
478s libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
478s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
478s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libquadmath0
478s libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data
478s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7
478s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64
478s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-cran-abind
478s r-cran-deldir r-cran-goftest r-cran-lattice r-cran-matrix r-cran-mgcv
478s r-cran-nlme r-cran-polyclip r-cran-rpart r-cran-spatstat
478s r-cran-spatstat.data r-cran-spatstat.explore r-cran-spatstat.geom
478s r-cran-spatstat.linnet r-cran-spatstat.model r-cran-spatstat.random
478s r-cran-spatstat.sparse r-cran-spatstat.univar r-cran-spatstat.utils
478s r-cran-survival r-cran-tensor unzip x11-common xdg-utils zip zlib1g-dev
478s 0 upgraded, 120 newly installed, 0 to remove and 0 not upgraded.
478s Need to get 187 MB of archives.
478s After this operation, 503 MB of additional disk space will be used.
478s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB]
479s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB]
479s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB]
480s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B]
480s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B]
480s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB]
480s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB]
480s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB]
480s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB]
480s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB]
480s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB]
480s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB]
481s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB]
481s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB]
481s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB]
481s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB]
481s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB]
484s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB]
484s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B]
484s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B]
484s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB]
484s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB]
485s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB]
485s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B]
485s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B]
485s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
485s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB]
485s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
485s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
485s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB]
485s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB]
485s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB]
485s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB]
485s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB]
486s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB]
487s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB]
487s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B]
487s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B]
487s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB]
487s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB]
487s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB]
487s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB]
487s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB]
487s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB]
487s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B]
487s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB]
487s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB]
487s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB]
487s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB]
487s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB]
487s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB]
487s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB]
487s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
487s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB]
487s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB]
488s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB]
488s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB]
488s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
488s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B]
488s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B]
488s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB]
489s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB]
489s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB]
489s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB]
489s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB]
489s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB]
489s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB]
489s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB]
489s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB]
489s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB]
489s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB]
489s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB]
489s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB]
489s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B]
489s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB]
489s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB]
489s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB]
489s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB]
489s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB]
489s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB]
489s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB]
489s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB]
489s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB]
489s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB]
489s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB]
490s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB]
490s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B]
490s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB]
490s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB]
490s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB]
490s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB]
490s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
490s Get:93 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB]
491s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB]
491s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB]
491s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB]
491s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB]
491s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B]
491s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
491s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB]
491s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB]
491s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-goftest amd64 1.2-3-1 [59.5 kB]
491s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB]
491s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB]
492s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.167-1 [2320 kB]
492s Get:106 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB]
492s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB]
492s Get:108 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB]
492s Get:109 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB]
492s Get:110 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.utils amd64 3.1-2-1 [383 kB]
492s Get:111 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.data all 3.1-4-1 [4047 kB]
492s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.univar amd64 3.1-1-1build1 [310 kB]
492s Get:113 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.geom amd64 3.3-5-1 [3959 kB]
493s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.random amd64 3.3-2-1 [1172 kB]
493s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tensor all 1.5-4 [15.7 kB]
493s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.sparse amd64 3.1-0-1 [221 kB]
493s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.explore amd64 3.3-4-1 [3347 kB]
493s Get:118 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.model amd64 3.3-4-1 [3397 kB]
493s Get:119 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.linnet amd64 3.2-5-1 [1509 kB]
493s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat amd64 3.3-1-1 [4121 kB]
493s Preconfiguring packages ...
493s Fetched 187 MB in 15s (12.6 MB/s)
493s Selecting previously unselected package libisl23:amd64.
494s (Reading database ...
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(Reading database ... 65%
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 76968 files and directories currently installed.)
494s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ...
494s Unpacking libisl23:amd64 (0.27-1) ...
494s Selecting previously unselected package libmpc3:amd64.
494s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ...
494s Unpacking libmpc3:amd64 (1.3.1-1build2) ...
494s Selecting previously unselected package cpp-14-x86-64-linux-gnu.
494s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ...
494s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
494s Selecting previously unselected package cpp-14.
494s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ...
494s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
494s Selecting previously unselected package cpp-x86-64-linux-gnu.
494s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
494s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
494s Selecting previously unselected package cpp.
494s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ...
494s Unpacking cpp (4:14.2.0-1ubuntu1) ...
494s Selecting previously unselected package libcc1-0:amd64.
494s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ...
494s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ...
494s Selecting previously unselected package libgomp1:amd64.
494s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ...
494s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ...
494s Selecting previously unselected package libitm1:amd64.
494s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ...
494s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ...
494s Selecting previously unselected package libasan8:amd64.
494s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ...
494s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ...
494s Selecting previously unselected package liblsan0:amd64.
494s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ...
494s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ...
494s Selecting previously unselected package libtsan2:amd64.
494s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ...
494s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ...
494s Selecting previously unselected package libubsan1:amd64.
494s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_amd64.deb ...
494s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ...
494s Selecting previously unselected package libhwasan0:amd64.
494s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_amd64.deb ...
494s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ...
494s Selecting previously unselected package libquadmath0:amd64.
494s Preparing to unpack .../014-libquadmath0_15-20250222-0ubuntu1_amd64.deb ...
494s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ...
494s Selecting previously unselected package libgcc-14-dev:amd64.
494s Preparing to unpack .../015-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ...
494s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ...
495s Selecting previously unselected package gcc-14-x86-64-linux-gnu.
495s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ...
495s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
495s Selecting previously unselected package gcc-14.
495s Preparing to unpack .../017-gcc-14_14.2.0-17ubuntu3_amd64.deb ...
495s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
495s Selecting previously unselected package gcc-x86-64-linux-gnu.
495s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
495s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
495s Selecting previously unselected package gcc.
495s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ...
495s Unpacking gcc (4:14.2.0-1ubuntu1) ...
495s Selecting previously unselected package libstdc++-14-dev:amd64.
495s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ...
495s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ...
495s Selecting previously unselected package g++-14-x86-64-linux-gnu.
495s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ...
495s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
495s Selecting previously unselected package g++-14.
495s Preparing to unpack .../022-g++-14_14.2.0-17ubuntu3_amd64.deb ...
495s Unpacking g++-14 (14.2.0-17ubuntu3) ...
495s Selecting previously unselected package g++-x86-64-linux-gnu.
495s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
495s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
495s Selecting previously unselected package g++.
495s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ...
495s Unpacking g++ (4:14.2.0-1ubuntu1) ...
495s Selecting previously unselected package build-essential.
495s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ...
495s Unpacking build-essential (12.10ubuntu1) ...
495s Selecting previously unselected package dctrl-tools.
495s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ...
495s Unpacking dctrl-tools (2.24-3build3) ...
495s Selecting previously unselected package fonts-dejavu-mono.
495s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ...
495s Unpacking fonts-dejavu-mono (2.37-8) ...
495s Selecting previously unselected package fonts-dejavu-core.
495s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ...
495s Unpacking fonts-dejavu-core (2.37-8) ...
496s Selecting previously unselected package fontconfig-config.
496s Preparing to unpack .../029-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ...
496s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
496s Selecting previously unselected package libfontconfig1:amd64.
496s Preparing to unpack .../030-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ...
496s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ...
496s Selecting previously unselected package fontconfig.
496s Preparing to unpack .../031-fontconfig_2.15.0-2ubuntu1_amd64.deb ...
496s Unpacking fontconfig (2.15.0-2ubuntu1) ...
496s Selecting previously unselected package libgfortran5:amd64.
496s Preparing to unpack .../032-libgfortran5_15-20250222-0ubuntu1_amd64.deb ...
496s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ...
496s Selecting previously unselected package libgfortran-14-dev:amd64.
496s Preparing to unpack .../033-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ...
496s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ...
496s Selecting previously unselected package gfortran-14-x86-64-linux-gnu.
496s Preparing to unpack .../034-gfortran-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ...
496s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
496s Selecting previously unselected package gfortran-14.
496s Preparing to unpack .../035-gfortran-14_14.2.0-17ubuntu3_amd64.deb ...
496s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
496s Selecting previously unselected package gfortran-x86-64-linux-gnu.
496s Preparing to unpack .../036-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
496s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
496s Selecting previously unselected package gfortran.
496s Preparing to unpack .../037-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ...
496s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
496s Selecting previously unselected package icu-devtools.
496s Preparing to unpack .../038-icu-devtools_76.1-1ubuntu2_amd64.deb ...
496s Unpacking icu-devtools (76.1-1ubuntu2) ...
496s Selecting previously unselected package libblas3:amd64.
496s Preparing to unpack .../039-libblas3_3.12.1-2_amd64.deb ...
496s Unpacking libblas3:amd64 (3.12.1-2) ...
496s Selecting previously unselected package libblas-dev:amd64.
496s Preparing to unpack .../040-libblas-dev_3.12.1-2_amd64.deb ...
496s Unpacking libblas-dev:amd64 (3.12.1-2) ...
496s Selecting previously unselected package libbz2-dev:amd64.
496s Preparing to unpack .../041-libbz2-dev_1.0.8-6_amd64.deb ...
496s Unpacking libbz2-dev:amd64 (1.0.8-6) ...
496s Selecting previously unselected package libpixman-1-0:amd64.
496s Preparing to unpack .../042-libpixman-1-0_0.44.0-3_amd64.deb ...
496s Unpacking libpixman-1-0:amd64 (0.44.0-3) ...
496s Selecting previously unselected package libxcb-render0:amd64.
496s Preparing to unpack .../043-libxcb-render0_1.17.0-2_amd64.deb ...
496s Unpacking libxcb-render0:amd64 (1.17.0-2) ...
496s Selecting previously unselected package libxcb-shm0:amd64.
496s Preparing to unpack .../044-libxcb-shm0_1.17.0-2_amd64.deb ...
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499s Selecting previously unselected package r-cran-abind.
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503s Setting up libpango-1.0-0:amd64 (1.56.2-1) ...
503s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ...
503s Setting up libcairo2:amd64 (1.18.2-2) ...
503s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ...
503s Setting up cpp (4:14.2.0-1ubuntu1) ...
503s Setting up gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
503s Setting up libpangoft2-1.0-0:amd64 (1.56.2-1) ...
503s Setting up libpangocairo-1.0-0:amd64 (1.56.2-1) ...
503s Setting up gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
503s Setting up gcc-14 (14.2.0-17ubuntu3) ...
503s Setting up gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
503s Setting up r-base-core (4.4.3-1) ...
503s Creating config file /etc/R/Renviron with new version
503s Setting up r-cran-lattice (0.22-6-1) ...
503s Setting up r-cran-nlme (3.1.167-1) ...
503s Setting up g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
503s Setting up r-cran-spatstat.utils (3.1-2-1) ...
503s Setting up g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
503s Setting up r-cran-tensor (1.5-4) ...
503s Setting up g++-14 (14.2.0-17ubuntu3) ...
503s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
503s Setting up r-cran-spatstat.univar (3.1-1-1build1) ...
503s Setting up r-cran-abind (1.4-8-1) ...
503s Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
503s Setting up r-cran-polyclip (1.10-7-1) ...
503s Setting up gcc (4:14.2.0-1ubuntu1) ...
503s Setting up r-cran-deldir (2.0-4-1build1) ...
503s Setting up r-cran-goftest (1.2-3-1) ...
503s Setting up r-cran-matrix (1.7-3-1) ...
503s Setting up r-cran-spatstat.sparse (3.1-0-1) ...
503s Setting up r-cran-mgcv (1.9-1-1) ...
503s Setting up g++ (4:14.2.0-1ubuntu1) ...
503s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
503s Setting up build-essential (12.10ubuntu1) ...
503s Setting up r-cran-survival (3.8-3-1) ...
503s Setting up gfortran (4:14.2.0-1ubuntu1) ...
503s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
503s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
503s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
503s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
503s Setting up r-cran-spatstat.data (3.1-4-1) ...
503s Setting up r-cran-spatstat.geom (3.3-5-1) ...
503s Setting up r-base-dev (4.4.3-1) ...
503s Setting up r-cran-rpart (4.1.24-1) ...
503s Setting up r-cran-spatstat.random (3.3-2-1) ...
503s Setting up r-cran-spatstat.explore (3.3-4-1) ...
503s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
503s Setting up r-cran-spatstat.model (3.3-4-1) ...
503s Setting up r-cran-spatstat.linnet (3.2-5-1) ...
503s Setting up r-cran-spatstat (3.3-1-1) ...
503s Processing triggers for install-info (7.1.1-1) ...
503s Processing triggers for libc-bin (2.41-1ubuntu2) ...
503s Processing triggers for man-db (2.13.0-1) ...
507s autopkgtest [23:57:02]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
507s autopkgtest [23:57:02]: test pkg-r-autopkgtest: [-----------------------
507s Test: Try to load the R library spatstat.linnet
507s
507s R version 4.4.3 (2025-02-28) -- "Trophy Case"
507s Copyright (C) 2025 The R Foundation for Statistical Computing
507s Platform: x86_64-pc-linux-gnu
507s
507s R is free software and comes with ABSOLUTELY NO WARRANTY.
507s You are welcome to redistribute it under certain conditions.
507s Type 'license()' or 'licence()' for distribution details.
507s
507s R is a collaborative project with many contributors.
507s Type 'contributors()' for more information and
507s 'citation()' on how to cite R or R packages in publications.
507s
507s Type 'demo()' for some demos, 'help()' for on-line help, or
507s 'help.start()' for an HTML browser interface to help.
507s Type 'q()' to quit R.
507s
507s > library('spatstat.linnet')
507s Loading required package: spatstat.data
508s Loading required package: spatstat.univar
508s spatstat.univar 3.1-1
508s Loading required package: spatstat.geom
508s spatstat.geom 3.3-5
508s Loading required package: spatstat.random
508s spatstat.random 3.3-2
508s Loading required package: spatstat.explore
508s Loading required package: nlme
508s spatstat.explore 3.3-4
508s Loading required package: spatstat.model
508s Loading required package: rpart
508s spatstat.model 3.3-4
508s spatstat.linnet 3.2-5
508s >
508s >
508s Other tests are currently unsupported!
508s They will be progressively added.
509s autopkgtest [23:57:04]: test pkg-r-autopkgtest: -----------------------]
509s pkg-r-autopkgtest PASS
509s autopkgtest [23:57:04]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - -
509s autopkgtest [23:57:04]: @@@@@@@@@@@@@@@@@@@@ summary
509s run-unit-test PASS
509s pkg-r-autopkgtest PASS
526s nova [W] Skipping flock for amd64
526s Creating nova instance adt-plucky-amd64-r-cran-spatstat.linnet-20250315-234835-juju-7f2275-prod-proposed-migration-environment-20-dbb22161-f227-4502-91a9-d417da9fdaa9 from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)...
526s nova [W] Timed out waiting for 9d9621e9-90f5-4ead-984c-fda278c27329 to get deleted.
526s nova [W] Skipping flock for amd64
526s Creating nova instance adt-plucky-amd64-r-cran-spatstat.linnet-20250315-234835-juju-7f2275-prod-proposed-migration-environment-20-dbb22161-f227-4502-91a9-d417da9fdaa9 from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)...
526s nova [W] Timed out waiting for 81da8647-88d1-4ab2-818f-3558f3b88716 to get deleted.