0s autopkgtest [22:32:25]: starting date and time: 2025-03-15 22:32:25+0000 0s autopkgtest [22:32:25]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [22:32:25]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1o4mt8bv/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-spatstat.explore --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-20.secgroup --name adt-plucky-amd64-r-cran-spatstat.explore-20250315-223225-juju-7f2275-prod-proposed-migration-environment-15-546be2e0-7433-4338-9d2a-713da9692d37 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 60s autopkgtest [22:33:25]: testbed dpkg architecture: amd64 61s autopkgtest [22:33:26]: testbed apt version: 2.9.31ubuntu1 61s autopkgtest [22:33:26]: @@@@@@@@@@@@@@@@@@@@ test bed setup 61s autopkgtest [22:33:26]: testbed release detected to be: None 62s autopkgtest [22:33:27]: updating testbed package index (apt update) 62s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 63s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 63s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 63s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 63s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 63s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 63s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 63s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 63s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 63s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 63s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 63s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 63s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 63s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 63s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 63s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 63s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 64s Fetched 1265 kB in 1s (1191 kB/s) 64s Reading package lists... 65s + lsb_release --codename --short 65s + RELEASE=plucky 65s + cat 65s + [ plucky != trusty ] 65s Reading package lists... 65s Building dependency tree...+ DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 65s 65s Reading state information... 66s Calculating upgrade... 66s Calculating upgrade... 66s The following package was automatically installed and is no longer required: 66s libnl-genl-3-200 66s Use 'sudo apt autoremove' to remove it. 66s The following NEW packages will be installed: 66s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 66s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 66s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 66s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 66s The following packages will be upgraded: 66s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 66s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base 66s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools 66s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0 66s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 66s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0 66s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1 66s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64 66s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6 66s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200 66s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib 66s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2 66s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 66s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 66s linux-firmware linux-generic linux-headers-generic linux-headers-virtual 66s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 66s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 66s parted pci.ids pciutils pinentry-curses python-apt-common python3 66s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi 66s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal 66s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13 66s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd 66s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd 66s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail 66s xz-utils 66s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 66s Need to get 829 MB of archives. 66s After this operation, 325 MB of additional disk space will be used. 66s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 67s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 67s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 67s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 67s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 68s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 68s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 68s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 68s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 68s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 68s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 68s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 68s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 68s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 68s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 68s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 68s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 68s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 68s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 68s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 68s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 68s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 68s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 68s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 68s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 68s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 68s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 68s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 68s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 68s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 68s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 68s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 68s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 69s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 69s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 69s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 69s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 69s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 69s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 69s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 69s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 69s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 69s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 69s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 69s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 69s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 69s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 69s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 69s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 69s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 69s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 69s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 69s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 69s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 69s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 69s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 70s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 70s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 70s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 70s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 70s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 70s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 70s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 70s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 70s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 70s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 70s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 70s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 70s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 70s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 70s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 70s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 70s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 70s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 70s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 70s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 70s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 70s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 70s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 70s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 70s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 70s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 70s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 70s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 70s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 70s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 70s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 70s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 70s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 70s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 70s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 70s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 70s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 70s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 70s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 70s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 70s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 70s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 70s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 70s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 70s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 71s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 71s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 71s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 71s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 72s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 73s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 73s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 73s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 234s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 234s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 235s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 235s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 235s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 235s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 235s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 235s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 242s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 244s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 255s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 255s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 255s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 255s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 255s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 255s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 255s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 256s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 256s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 256s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 256s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 256s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 256s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 256s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 256s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 256s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 256s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 256s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 256s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 256s Preconfiguring packages ... 257s Fetched 829 MB in 3min 10s (4365 kB/s) 257s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 264s Preparing to unpack .../0-libsqlite3-0_3.46.1-2_amd64.deb ... 264s Unpacking libsqlite3-0:amd64 (3.46.1-2) over (3.46.1-1) ... 264s Preparing to unpack .../1-python3.13_3.13.2-2_amd64.deb ... 264s Unpacking python3.13 (3.13.2-2) over (3.13.2-1) ... 264s Preparing to unpack .../2-python3.13-minimal_3.13.2-2_amd64.deb ... 264s Unpacking python3.13-minimal (3.13.2-2) over (3.13.2-1) ... 264s Preparing to unpack .../3-libpython3.13-minimal_3.13.2-2_amd64.deb ... 264s Unpacking libpython3.13-minimal:amd64 (3.13.2-2) over (3.13.2-1) ... 264s Preparing to unpack .../4-libpython3.13-stdlib_3.13.2-2_amd64.deb ... 264s Unpacking libpython3.13-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 264s Preparing to unpack .../5-libpython3-stdlib_3.13.2-2_amd64.deb ... 264s Unpacking libpython3-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 264s Preparing to unpack .../6-rsync_3.4.1+ds1-3_amd64.deb ... 264s Unpacking rsync (3.4.1+ds1-3) over (3.4.1-0syncable1) ... 264s Selecting previously unselected package libdebuginfod-common. 264s Preparing to unpack .../7-libdebuginfod-common_0.192-4_all.deb ... 264s Unpacking libdebuginfod-common (0.192-4) ... 264s Preparing to unpack .../8-libsemanage-common_3.7-2.1build1_all.deb ... 264s Unpacking libsemanage-common (3.7-2.1build1) over (3.7-2.1) ... 264s Setting up libsemanage-common (3.7-2.1build1) ... 264s (Reading database ... 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.../23-parted_3.6-5_amd64.deb ... 267s Unpacking parted (3.6-5) over (3.6-4build1) ... 267s Preparing to unpack .../24-libparted2t64_3.6-5_amd64.deb ... 267s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 267s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 267s Unpacking libparted2t64:amd64 (3.6-5) over (3.6-4build1) ... 267s Preparing to unpack .../25-pci.ids_0.0~2025.03.09-1_all.deb ... 267s Unpacking pci.ids (0.0~2025.03.09-1) over (0.0~2025.02.12-1) ... 267s Preparing to unpack .../26-pciutils_1%3a3.13.0-2_amd64.deb ... 267s Unpacking pciutils (1:3.13.0-2) over (1:3.13.0-1) ... 267s Preparing to unpack .../27-libpci3_1%3a3.13.0-2_amd64.deb ... 267s Unpacking libpci3:amd64 (1:3.13.0-2) over (1:3.13.0-1) ... 268s Preparing to unpack .../28-strace_6.13+ds-1ubuntu1_amd64.deb ... 268s Unpacking strace 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(1.0.6-6) over (1.0.6-5) ... 280s Preparing to unpack .../79-python3-rpds-py_0.21.0-2ubuntu2_amd64.deb ... 280s Unpacking python3-rpds-py (0.21.0-2ubuntu2) over (0.21.0-2ubuntu1) ... 280s Preparing to unpack .../80-python3-systemd_235-1build6_amd64.deb ... 280s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 280s Preparing to unpack .../81-python3.13-gdbm_3.13.2-2_amd64.deb ... 280s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 280s Preparing to unpack .../82-ubuntu-kernel-accessories_1.549_amd64.deb ... 280s Unpacking ubuntu-kernel-accessories (1.549) over (1.548) ... 280s Preparing to unpack .../83-cloud-init_25.1-0ubuntu3_all.deb ... 280s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 280s Preparing to unpack .../84-python3-bcrypt_4.2.0-2.1build1_amd64.deb ... 280s Unpacking python3-bcrypt (4.2.0-2.1build1) over (4.2.0-2.1) ... 280s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 280s Setting up media-types (13.0.0) ... 280s Installing new version of config file /etc/mime.types ... 280s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 280s Setting up ubuntu-kernel-accessories (1.549) ... 280s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 280s Setting up pci.ids (0.0~2025.03.09-1) ... 280s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 280s Setting up apt-utils (2.9.33) ... 280s Setting up libdebuginfod-common (0.192-4) ... 280s Setting up exfatprogs (1.2.8-1) ... 280s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 280s Setting up bpftool (7.6.0+6.14.0-10.10) ... 280s Setting up libestr0:amd64 (0.1.11-2) ... 280s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 280s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 280s Setting up dosfstools (4.2-1.2) ... 280s Setting up rsyslog (8.2412.0-2ubuntu2) ... 280s info: The user `syslog' is already a member of `adm'. 281s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 281s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 281s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 281s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 281s Setting up systemd (257.3-1ubuntu3) ... 282s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 282s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 282s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 283s Setting up libparted2t64:amd64 (3.6-5) ... 283s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 283s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 283s Setting up linux-headers-generic (6.14.0-10.10) ... 283s Setting up libjemalloc2:amd64 (5.3.0-3) ... 283s Setting up locales (2.41-1ubuntu1) ... 283s Installing new version of config file /etc/locale.alias ... 283s Generating locales (this might take a while)... 285s en_US.UTF-8... done 285s Generation complete. 285s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 285s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 285s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 285s Installing new version of config file /etc/apparmor.d/fusermount3 ... 285s Installing new version of config file /etc/apparmor.d/lsusb ... 285s Installing new version of config file /etc/apparmor.d/openvpn ... 286s Reloading AppArmor profiles 288s Setting up libftdi1-2:amd64 (1.5-8build1) ... 288s Setting up libglib2.0-data (2.84.0-1) ... 288s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 288s Setting up libncurses6:amd64 (6.5+20250216-2) ... 288s Setting up strace (6.13+ds-1ubuntu1) ... 288s Setting up xz-utils (5.6.4-1) ... 288s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 288s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 288s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 288s Setting up udev (257.3-1ubuntu3) ... 289s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 291s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 291s Setting up libpci3:amd64 (1:3.13.0-2) ... 291s Setting up whiptail (0.52.24-4ubuntu2) ... 291s Setting up python-apt-common (2.9.9build1) ... 291s Setting up pnp.ids (0.393-3) ... 291s Setting up libnl-3-200:amd64 (3.7.0-1) ... 291s Setting up python3.13-minimal (3.13.2-2) ... 292s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ... 292s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 292s Setting up libc-dev-bin (2.41-1ubuntu1) ... 292s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 292s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 292s Setting up rsync (3.4.1+ds1-3) ... 293s rsync.service is a disabled or a static unit not running, not starting it. 293s Setting up python3.13-gdbm (3.13.2-2) ... 293s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 293s Setting up systemd-resolved (257.3-1ubuntu3) ... 294s Setting up initramfs-tools-bin (0.146ubuntu1) ... 294s Setting up ncurses-term (6.5+20250216-2) ... 294s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 294s Setting up libpython3.13:amd64 (3.13.2-2) ... 294s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 294s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 294s Setting up systemd-sysv (257.3-1ubuntu3) ... 294s Setting up linux-headers-virtual (6.14.0-10.10) ... 294s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 294s Setting up python3.13 (3.13.2-2) ... 295s Setting up htop (3.4.0-2) ... 295s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 297s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 297s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 297s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 297s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 297s Setting up parted (3.6-5) ... 297s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ... 297s Setting up python3 (3.13.2-2) ... 297s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ... 297s Setting up python3-markupsafe (2.1.5-1build4) ... 297s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 299s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 299s Setting up hwdata (0.393-3) ... 299s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 300s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 300s No schema files found: doing nothing. 300s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 300s Setting up linux-perf (6.14.0-10.10) ... 300s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 300s Setting up pciutils (1:3.13.0-2) ... 300s Setting up python3-rpds-py (0.21.0-2ubuntu2) ... 300s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 300s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 300s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 300s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 300s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 300s Setting up curl (8.12.1-3ubuntu1) ... 300s Setting up linux-image-virtual (6.14.0-10.10) ... 300s Setting up initramfs-tools-core (0.146ubuntu1) ... 300s Setting up linux-tools-common (6.14.0-10.10) ... 300s Setting up python3-systemd (235-1build6) ... 300s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 300s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 300s Setting up linux-image-generic (6.14.0-10.10) ... 300s Setting up python3-dbus (1.3.2-5build5) ... 300s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 300s Setting up initramfs-tools (0.146ubuntu1) ... 300s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 300s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 300s update-initramfs: deferring update (trigger activated) 300s Setting up linux-generic (6.14.0-10.10) ... 300s Setting up ubuntu-minimal (1.549) ... 300s Setting up python3-apt (2.9.9build1) ... 300s Setting up python3-bcrypt (4.2.0-2.1build1) ... 301s Setting up python3-yaml (6.0.2-1build2) ... 301s Setting up libfwupd3:amd64 (2.0.6-4) ... 301s Setting up python3-lazr.uri (1.0.6-6) ... 301s Setting up binutils (2.44-3ubuntu1) ... 301s Setting up ubuntu-standard (1.549) ... 301s Setting up cloud-init-base (25.1-0ubuntu3) ... 302s Setting up linux-virtual (6.14.0-10.10) ... 302s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 302s Setting up python3-gi (3.50.0-4build1) ... 302s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 302s Setting up fwupd (2.0.6-4) ... 303s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 303s Setting up cloud-init (25.1-0ubuntu3) ... 303s Processing triggers for man-db (2.13.0-1) ... 305s Processing triggers for dbus (1.16.2-1ubuntu1) ... 305s Processing triggers for shared-mime-info (2.4-5) ... 305s Warning: program compiled against libxml 212 using older 209 305s Processing triggers for libc-bin (2.41-1ubuntu1) ... 305s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 305s /etc/kernel/postinst.d/initramfs-tools: 305s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 305s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 316s /etc/kernel/postinst.d/zz-update-grub: 316s Sourcing file `/etc/default/grub' 316s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 316s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 316s Generating grub configuration file ... 316s Found linux image: /boot/vmlinuz-6.14.0-10-generic 316s Found initrd image: /boot/initrd.img-6.14.0-10-generic 316s Found linux image: /boot/vmlinuz-6.12.0-16-generic 316s Found initrd image: /boot/initrd.img-6.12.0-16-generic 316s Found linux image: /boot/vmlinuz-6.11.0-8-generic 316s Found initrd image: /boot/initrd.img-6.11.0-8-generic 317s Warning: os-prober will not be executed to detect other bootable partitions. 317s Systems on them will not be added to the GRUB boot configuration. 317s Check GRUB_DISABLE_OS_PROBER documentation entry. 317s Adding boot menu entry for UEFI Firmware Settings ... 317s done 317s Processing triggers for initramfs-tools (0.146ubuntu1) ... 317s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 317s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 328s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 328s + /usr/lib/apt/apt-helper analyze-pattern ?true 328s + uname -r 328s + sed s/\./\\./g 328s + running_kernel_pattern=^linux-.*6\.12\.0-16-generic.* 328s + apt list ?obsolete 328s + tail -n+2 328s + cut -d/ -f1 328s + grep -v ^linux-.*6\.12\.0-16-generic.* 329s + obsolete_pkgs=linux-headers-6.11.0-8-generic 329s linux-headers-6.11.0-8 329s linux-headers-6.12.0-16 329s linux-image-6.11.0-8-generic 329s linux-modules-6.11.0-8-generic 329s linux-tools-6.11.0-8-generic 329s linux-tools-6.11.0-8 329s linux-tools-6.12.0-16 329s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-headers-6.12.0-16 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 linux-tools-6.12.0-16 333s Reading package lists... 335s Building dependency tree... 335s Reading state information... 335s Solving dependencies... 335s The following packages will be REMOVED: 335s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 335s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 335s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 335s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 335s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 335s linux-tools-6.12.0-16-generic* 335s 0 upgraded, 0 newly installed, 15 to remove and 5 not upgraded. 335s After this operation, 371 MB disk space will be freed. 335s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 335s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 335s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 335s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 335s Removing libpython3.12t64:amd64 (3.12.9-1) ... 335s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 335s Removing libnsl2:amd64 (1.3.0-3build3) ... 335s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 335s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 335s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 335s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 335s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 336s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 336s /etc/kernel/postrm.d/initramfs-tools: 336s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 336s /etc/kernel/postrm.d/zz-update-grub: 336s Sourcing file `/etc/default/grub' 336s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 336s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 336s Generating grub configuration file ... 336s Found linux image: /boot/vmlinuz-6.14.0-10-generic 336s Found initrd image: /boot/initrd.img-6.14.0-10-generic 336s Found linux image: /boot/vmlinuz-6.12.0-16-generic 336s Found initrd image: /boot/initrd.img-6.12.0-16-generic 336s Warning: os-prober will not be executed to detect other bootable partitions. 336s Systems on them will not be added to the GRUB boot configuration. 336s Check GRUB_DISABLE_OS_PROBER documentation entry. 336s Adding boot menu entry for UEFI Firmware Settings ... 336s done 336s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 337s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 337s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 337s Processing triggers for libc-bin (2.41-1ubuntu1) ... 337s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84830 files and directories currently installed.) 337s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 337s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 337s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 337s + grep -q trusty /etc/lsb-release 337s + [ ! -d /usr/share/doc/unattended-upgrades ] 337s + [ ! -d /usr/share/doc/lxd ] 337s + [ ! -d /usr/share/doc/lxd-client ] 337s + [ ! -d /usr/share/doc/snapd ] 337s + type iptables 337s + cat 337s + chmod 755 /etc/rc.local 337s + . /etc/rc.local 337s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 337s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 337s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 337s + uname -m 337s + [ x86_64 = ppc64le ] 337s + [ -d /run/systemd/system ] 337s + systemd-detect-virt --quiet --vm 337s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 337s + cat 337s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 337s + echo COMPRESS=lz4 337s autopkgtest [22:38:02]: upgrading testbed (apt dist-upgrade and autopurge) 337s Reading package lists... 338s Building dependency tree... 338s Reading state information... 338s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 338s Starting 2 pkgProblemResolver with broken count: 0 338s Done 339s Entering ResolveByKeep 339s 339s Calculating upgrade... 339s The following packages will be upgraded: 339s libc-bin libc-dev-bin libc6 libc6-dev locales 339s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 339s Need to get 10.5 MB of archives. 339s After this operation, 1024 B of additional disk space will be used. 339s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 340s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 340s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 340s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 340s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 341s Preconfiguring packages ... 341s Fetched 10.5 MB in 1s (9099 kB/s) 341s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 341s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 341s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 341s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 341s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 341s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 341s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 341s Setting up libc6:amd64 (2.41-1ubuntu2) ... 341s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 341s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 341s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 341s Setting up libc-bin (2.41-1ubuntu2) ... 342s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 342s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 342s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 342s Setting up locales (2.41-1ubuntu2) ... 343s Generating locales (this might take a while)... 344s en_US.UTF-8... done 344s Generation complete. 344s Setting up libc-dev-bin (2.41-1ubuntu2) ... 344s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 344s Processing triggers for man-db (2.13.0-1) ... 345s Processing triggers for systemd (257.3-1ubuntu3) ... 346s Reading package lists... 346s Building dependency tree... 346s Reading state information... 346s Starting pkgProblemResolver with broken count: 0 346s Starting 2 pkgProblemResolver with broken count: 0 346s Done 346s Solving dependencies... 347s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 347s autopkgtest [22:38:12]: rebooting testbed after setup commands that affected boot 361s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 368s autopkgtest [22:38:33]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 371s autopkgtest [22:38:36]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-spatstat.explore 373s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-spatstat.explore 3.3-4-1 (dsc) [2563 B] 373s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-spatstat.explore 3.3-4-1 (tar) [668 kB] 373s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-spatstat.explore 3.3-4-1 (diff) [3452 B] 373s gpgv: Signature made Fri Jan 31 07:56:43 2025 UTC 373s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 373s gpgv: issuer "plessy@debian.org" 373s gpgv: Can't check signature: No public key 373s dpkg-source: warning: cannot verify inline signature for ./r-cran-spatstat.explore_3.3-4-1.dsc: no acceptable signature found 373s autopkgtest [22:38:38]: testing package r-cran-spatstat.explore version 3.3-4-1 374s autopkgtest [22:38:39]: build not needed 381s autopkgtest [22:38:46]: test run-unit-test: preparing testbed 381s Reading package lists... 381s Building dependency tree... 381s Reading state information... 382s Starting pkgProblemResolver with broken count: 0 382s Starting 2 pkgProblemResolver with broken count: 0 382s Done 382s The following NEW packages will be installed: 382s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 382s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libgfortran5 libgomp1 382s libgraphite2-3 libgsl28 libgslcblas0 libharfbuzz0b libice6 libjbig0 382s libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libpango-1.0-0 382s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 382s libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 382s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 382s r-base-core r-cran-abind r-cran-deldir r-cran-goftest r-cran-gsl 382s r-cran-lattice r-cran-locfit r-cran-matrix r-cran-mgcv r-cran-nlme 382s r-cran-polyclip r-cran-rpart r-cran-sm r-cran-spatial r-cran-spatstat 382s r-cran-spatstat.data r-cran-spatstat.explore r-cran-spatstat.geom 382s r-cran-spatstat.linnet r-cran-spatstat.model r-cran-spatstat.random 382s r-cran-spatstat.sparse r-cran-spatstat.univar r-cran-spatstat.utils 382s r-cran-survival r-cran-tensor unzip x11-common xdg-utils zip 382s 0 upgraded, 71 newly installed, 0 to remove and 0 not upgraded. 382s Need to get 88.0 MB of archives. 382s After this operation, 147 MB of additional disk space will be used. 382s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 383s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 383s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 383s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 383s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 383s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 383s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 383s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 383s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 383s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 383s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 383s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 383s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 383s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 383s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 383s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 383s Get:17 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgslcblas0 amd64 2.8+dfsg-5 [290 kB] 383s Get:18 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgsl28 amd64 2.8+dfsg-5 [1285 kB] 383s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 383s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 383s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 383s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 383s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 383s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 383s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 383s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 383s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 383s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 383s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 383s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 383s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 383s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 383s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 383s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 383s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 383s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 383s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 383s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 383s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 383s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 383s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 383s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 383s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 383s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 383s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 383s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 384s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 384s Get:48 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 384s Get:49 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-goftest amd64 1.2-3-1 [59.5 kB] 384s Get:50 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gsl amd64 2.1-8-1build1 [486 kB] 384s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 384s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-locfit amd64 1.5-9.12-1 [552 kB] 384s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 385s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.167-1 [2320 kB] 385s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 385s Get:56 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB] 385s Get:57 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB] 385s Get:58 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB] 385s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sm amd64 2.2-6.0-1 [788 kB] 385s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatial amd64 7.3-18-1 [137 kB] 385s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.utils amd64 3.1-2-1 [383 kB] 385s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.data all 3.1-4-1 [4047 kB] 385s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.univar amd64 3.1-1-1build1 [310 kB] 385s Get:64 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.geom amd64 3.3-5-1 [3959 kB] 386s Get:65 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.random amd64 3.3-2-1 [1172 kB] 386s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tensor all 1.5-4 [15.7 kB] 386s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.sparse amd64 3.1-0-1 [221 kB] 386s Get:68 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.explore amd64 3.3-4-1 [3347 kB] 386s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.model amd64 3.3-4-1 [3397 kB] 386s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.linnet amd64 3.2-5-1 [1509 kB] 386s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat amd64 3.3-1-1 [4121 kB] 387s Preconfiguring packages ... 387s Fetched 88.0 MB in 4s (21.0 MB/s) 387s Selecting previously unselected package fonts-dejavu-mono. 387s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 387s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 387s Unpacking fonts-dejavu-mono (2.37-8) ... 387s Selecting previously unselected package fonts-dejavu-core. 387s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 387s Unpacking fonts-dejavu-core (2.37-8) ... 387s Selecting previously unselected package fontconfig-config. 387s Preparing to unpack .../02-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 387s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 387s Selecting previously unselected package libfontconfig1:amd64. 387s Preparing to unpack .../03-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 387s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 387s Selecting previously unselected package fontconfig. 387s Preparing to unpack .../04-fontconfig_2.15.0-2ubuntu1_amd64.deb ... 387s Unpacking fontconfig (2.15.0-2ubuntu1) ... 388s Selecting previously unselected package libblas3:amd64. 388s Preparing to unpack .../05-libblas3_3.12.1-2_amd64.deb ... 388s Unpacking libblas3:amd64 (3.12.1-2) ... 388s Selecting previously unselected package libpixman-1-0:amd64. 388s Preparing to unpack .../06-libpixman-1-0_0.44.0-3_amd64.deb ... 388s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 388s Selecting previously unselected package libxcb-render0:amd64. 388s Preparing to unpack .../07-libxcb-render0_1.17.0-2_amd64.deb ... 388s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 388s Selecting previously unselected package libxcb-shm0:amd64. 388s Preparing to unpack .../08-libxcb-shm0_1.17.0-2_amd64.deb ... 388s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 388s Selecting previously unselected package libxrender1:amd64. 388s Preparing to unpack .../09-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 388s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 388s Selecting previously unselected package libcairo2:amd64. 388s Preparing to unpack .../10-libcairo2_1.18.2-2_amd64.deb ... 388s Unpacking libcairo2:amd64 (1.18.2-2) ... 388s Selecting previously unselected package libdatrie1:amd64. 388s Preparing to unpack .../11-libdatrie1_0.2.13-3build1_amd64.deb ... 388s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 388s Selecting previously unselected package libdeflate0:amd64. 388s Preparing to unpack .../12-libdeflate0_1.23-1_amd64.deb ... 388s Unpacking libdeflate0:amd64 (1.23-1) ... 388s Selecting previously unselected package libgfortran5:amd64. 388s Preparing to unpack .../13-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 388s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 388s Selecting previously unselected package libgomp1:amd64. 388s Preparing to unpack .../14-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 388s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 388s Selecting previously unselected package libgraphite2-3:amd64. 388s Preparing to unpack .../15-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 388s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 388s Selecting previously unselected package libgslcblas0:amd64. 388s Preparing to unpack .../16-libgslcblas0_2.8+dfsg-5_amd64.deb ... 388s Unpacking libgslcblas0:amd64 (2.8+dfsg-5) ... 388s Selecting previously unselected package libgsl28:amd64. 388s Preparing to unpack .../17-libgsl28_2.8+dfsg-5_amd64.deb ... 388s Unpacking libgsl28:amd64 (2.8+dfsg-5) ... 388s Selecting previously unselected package libharfbuzz0b:amd64. 388s Preparing to unpack .../18-libharfbuzz0b_10.2.0-1_amd64.deb ... 388s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 388s Selecting previously unselected package x11-common. 388s Preparing to unpack .../19-x11-common_1%3a7.7+23ubuntu3_all.deb ... 388s Unpacking x11-common (1:7.7+23ubuntu3) ... 388s Selecting previously unselected package libice6:amd64. 388s Preparing to unpack .../20-libice6_2%3a1.1.1-1_amd64.deb ... 388s Unpacking libice6:amd64 (2:1.1.1-1) ... 388s Selecting previously unselected package libjpeg-turbo8:amd64. 388s Preparing to unpack .../21-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 388s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 388s Selecting previously unselected package libjpeg8:amd64. 388s Preparing to unpack .../22-libjpeg8_8c-2ubuntu11_amd64.deb ... 388s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 388s Selecting previously unselected package liblapack3:amd64. 388s Preparing to unpack .../23-liblapack3_3.12.1-2_amd64.deb ... 388s Unpacking liblapack3:amd64 (3.12.1-2) ... 388s Selecting previously unselected package liblerc4:amd64. 388s Preparing to unpack .../24-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 388s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 388s Selecting previously unselected package libthai-data. 388s Preparing to unpack .../25-libthai-data_0.1.29-2build1_all.deb ... 388s Unpacking libthai-data (0.1.29-2build1) ... 388s Selecting previously unselected package libthai0:amd64. 388s Preparing to unpack .../26-libthai0_0.1.29-2build1_amd64.deb ... 388s Unpacking libthai0:amd64 (0.1.29-2build1) ... 388s Selecting previously unselected package libpango-1.0-0:amd64. 388s Preparing to unpack .../27-libpango-1.0-0_1.56.2-1_amd64.deb ... 388s Unpacking libpango-1.0-0:amd64 (1.56.2-1) ... 388s Selecting previously unselected package libpangoft2-1.0-0:amd64. 388s Preparing to unpack .../28-libpangoft2-1.0-0_1.56.2-1_amd64.deb ... 388s Unpacking libpangoft2-1.0-0:amd64 (1.56.2-1) ... 388s Selecting previously unselected package libpangocairo-1.0-0:amd64. 388s Preparing to unpack .../29-libpangocairo-1.0-0_1.56.2-1_amd64.deb ... 388s Unpacking libpangocairo-1.0-0:amd64 (1.56.2-1) ... 388s Selecting previously unselected package libpaper2:amd64. 388s Preparing to unpack .../30-libpaper2_2.2.5-0.3_amd64.deb ... 388s Unpacking libpaper2:amd64 (2.2.5-0.3) ... 388s Selecting previously unselected package libpaper-utils. 388s Preparing to unpack .../31-libpaper-utils_2.2.5-0.3_amd64.deb ... 388s Unpacking libpaper-utils (2.2.5-0.3) ... 388s Selecting previously unselected package libsharpyuv0:amd64. 388s Preparing to unpack .../32-libsharpyuv0_1.5.0-0.1_amd64.deb ... 388s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 388s Selecting previously unselected package libsm6:amd64. 388s Preparing to unpack .../33-libsm6_2%3a1.2.4-1_amd64.deb ... 388s Unpacking libsm6:amd64 (2:1.2.4-1) ... 388s Selecting previously unselected package libtcl8.6:amd64. 388s Preparing to unpack .../34-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 388s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 389s Selecting previously unselected package libjbig0:amd64. 389s Preparing to unpack .../35-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 389s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 389s Selecting previously unselected package libwebp7:amd64. 389s Preparing to unpack .../36-libwebp7_1.5.0-0.1_amd64.deb ... 389s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 389s Selecting previously unselected package libtiff6:amd64. 389s Preparing to unpack .../37-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 389s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 389s Selecting previously unselected package libxft2:amd64. 389s Preparing to unpack .../38-libxft2_2.3.6-1build1_amd64.deb ... 389s Unpacking libxft2:amd64 (2.3.6-1build1) ... 389s Selecting previously unselected package libxss1:amd64. 389s Preparing to unpack .../39-libxss1_1%3a1.2.3-1build3_amd64.deb ... 389s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 389s Selecting previously unselected package libtk8.6:amd64. 389s Preparing to unpack .../40-libtk8.6_8.6.16-1_amd64.deb ... 389s Unpacking libtk8.6:amd64 (8.6.16-1) ... 389s Selecting previously unselected package libxt6t64:amd64. 389s Preparing to unpack .../41-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 389s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 389s Selecting previously unselected package zip. 389s Preparing to unpack .../42-zip_3.0-14ubuntu2_amd64.deb ... 389s Unpacking zip (3.0-14ubuntu2) ... 389s Selecting previously unselected package unzip. 389s Preparing to unpack .../43-unzip_6.0-28ubuntu6_amd64.deb ... 389s Unpacking unzip (6.0-28ubuntu6) ... 389s Selecting previously unselected package xdg-utils. 389s Preparing to unpack .../44-xdg-utils_1.2.1-2ubuntu1_all.deb ... 389s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 389s Selecting previously unselected package r-base-core. 389s Preparing to unpack .../45-r-base-core_4.4.3-1_amd64.deb ... 389s Unpacking r-base-core (4.4.3-1) ... 389s Selecting previously 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for Statistical Computing 396s Platform: x86_64-pc-linux-gnu 396s 396s R is free software and comes with ABSOLUTELY NO WARRANTY. 396s You are welcome to redistribute it under certain conditions. 396s Type 'license()' or 'licence()' for distribution details. 396s 396s R is a collaborative project with many contributors. 396s Type 'contributors()' for more information and 396s 'citation()' on how to cite R or R packages in publications. 396s 396s Type 'demo()' for some demos, 'help()' for on-line help, or 396s 'help.start()' for an HTML browser interface to help. 396s Type 'q()' to quit R. 396s 396s > #' 396s > #' Header for all (concatenated) test files 396s > #' 396s > #' Require spatstat.explore 396s > #' Obtain environment variable controlling tests. 396s > #' 396s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $ 396s > 396s > require(spatstat.explore) 396s Loading required package: spatstat.explore 396s Loading required package: spatstat.data 397s Loading required package: spatstat.univar 397s spatstat.univar 3.1-1 397s Loading required package: spatstat.geom 397s spatstat.geom 3.3-5 397s Loading required package: spatstat.random 397s spatstat.random 3.3-2 397s Loading required package: nlme 397s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0) 397s > ALWAYS <- TRUE 397s > cat(paste("--------- Executing", 397s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of", 397s + "test code -----------\n")) 397s --------- Executing **RESTRICTED** subset of test code ----------- 397s > ## tests/cdf.test.R 397s > 397s > 397s > local({ 397s + NSIM <- 9 397s + op <- spatstat.options(ndummy.min=16, npixel=32) 397s + AA <- split(ants, un=FALSE) 397s + AC <- AA[["Cataglyphis"]] 397s + AM <- AA[["Messor"]] 397s + DM <- distmap(AM) 397s + if(ALWAYS) { 397s + ## Check cdf.test with strange data 397s spatstat.explore 3.3-4 397s + ## Marked point patterns with some marks not represented 397s + ## should produce a warning, rather than a crash: 397s + cdf.test(AC, DM) 397s + } 397s + if(FULLTEST) { 397s + ## should be OK: 397s + cdf.test(unmark(AC), DM) 398s + cdf.test(unmark(AC), DM, "cvm") 398s + cdf.test(unmark(AC), DM, "ad") 398s + ## other code blocks 398s + cdf.test(finpines, "x") 398s + } 398s + }) 398s > 398s > 398s > #' tests/circular.R 398s > #' 398s > #' Circular data and periodic distributions 398s > #' 398s > #' $Revision: 1.4 $ $Date: 2020/04/28 12:58:26 $ 398s > 398s > 398s > local({ 398s + if(ALWAYS) { 398s + a <- pairorient(redwood, 0.05, 0.15, correction="none") 398s + rose(a) 398s + } 398s + if(FULLTEST) { 398s + b <- pairorient(redwood, 0.05, 0.15, correction="best") 398s + rose(b, start="N", clockwise=TRUE) 398s + } 398s + if(ALWAYS) { 398s + #' arcs on the circle 398s + #' (depends on numerical behaviour) 398s + set.seed(19171025) 398s + aa <- replicate(7, runif(1, 0, 2*pi) + c(0, runif(1, 0, pi)), 398s + simplify=FALSE) 398s + bb <- circunion(aa) 398s + 398s + assertsingle <- function(x, a, id) { 398s + y <- circunion(x) 398s + if(length(y) != 1 || max(abs(y[[1]] - a)) > .Machine$double.eps) 398s + stop(paste("Incorrect result from circunion in case", id), 398s + call.=FALSE) 398s + invisible(NULL) 398s + } 398s + 398s + assertsingle(list(c(pi/3, pi), c(pi/2, 3*pi/2)), 398s + c(pi/3, 3*pi/2), 398s + 1) 398s + assertsingle(list(c(0, pi/2), c(pi/4, pi)), 398s + c(0,pi), 398s + 2) 398s + assertsingle(list(c(-pi/4, pi/2), c(pi/4, pi)), 398s + c((2-1/4)*pi, pi), 398s + 3) 398s + } 398s + }) 398s Warning message: 398s In cdf.test.ppp(AC, DM) : 398s Ignoring marks, because some mark values have zero frequency 398s > 398s > 398s > #' 398s > #' tests/closecore.R 398s > #' 398s > #' check 'closepairs/crosspairs' code 398s > #' invoked in core package 398s > #' 398s > #' $Revision: 1.4 $ $Date: 2021/04/17 04:16:43 $ 398s > #' 398s > #' ------- All this code must be run on every hardware ------- 398s > #' 398s > 398s > local({ 398s + #' weightedclosepairs is in wtdclosepair.R 398s + wi <- weightedclosepairs(redwood, 0.05, "isotropic") 398s + if(FULLTEST) { 398s + wt <- weightedclosepairs(redwood, 0.05, "translate") 398s + wp <- weightedclosepairs(redwood, 0.05, "periodic") 398s + } 398s + #' markmarkscatter uses closepairs.pp3 398s + X <- runifpoint3(100) 398s + marks(X) <- runif(100) 398s + markmarkscatter(X, 0.2) 398s + if(FULLTEST) { 398s + markmarkscatter(X[FALSE], 0.2) 398s + } 398s + }) 398s > 398s > #' 398s > #' contact.R 398s > #' 398s > #' Check machinery for first contact distributions 398s > #' 398s > #' $Revision: 1.8 $ $Date: 2021/04/17 02:25:55 $ 398s > 398s > local({ 398s + if(ALWAYS) { 398s + #' reduce complexity 398s + Y <- as.mask(heather$coarse, dimyx=c(50, 25)) 398s + 398s + X <- runifpoint(100, win = complement.owin(Y)) 398s + if(FULLTEST) G <- Gfox(X, Y) 398s + J <- Jfox(X, Y) 398s + 398s + Y <- as.polygonal(Y) 398s + X <- runifpoint(100, win = complement.owin(Y)) 398s + if(FULLTEST) G <- Gfox(X, Y) 398s + J <- Jfox(X, Y) 398s + 398s + op <- spatstat.options(exactdt.checks.data=TRUE) 398s + U <- exactdt(X) 398s + spatstat.options(op) 398s + } 398s + }) 398s > 398s > reset.spatstat.options() 398s > 398s BEGIN TEST testsD.R 398s 398s R version 4.4.3 (2025-02-28) -- "Trophy Case" 398s Copyright (C) 2025 The R Foundation for Statistical Computing 398s Platform: x86_64-pc-linux-gnu 398s 398s R is free software and comes with ABSOLUTELY NO WARRANTY. 398s You are welcome to redistribute it under certain conditions. 398s Type 'license()' or 'licence()' for distribution details. 398s 398s R is a collaborative project with many contributors. 398s Type 'contributors()' for more information and 398s 'citation()' on how to cite R or R packages in publications. 398s 398s Type 'demo()' for some demos, 'help()' for on-line help, or 398s 'help.start()' for an HTML browser interface to help. 398s Type 'q()' to quit R. 398s 398s Loading required package: spatstat.explore 398s > #' 398s > #' Header for all (concatenated) test files 398s > #' 398s > #' Require spatstat.explore 398s > #' Obtain environment variable controlling tests. 398s > #' 398s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $ 398s > 398s > require(spatstat.explore) 398s Loading required package: spatstat.data 399s Loading required package: spatstat.univar 399s spatstat.univar 3.1-1 399s Loading required package: spatstat.geom 399s spatstat.geom 3.3-5 399s Loading required package: spatstat.random 399s spatstat.random 3.3-2 399s Loading required package: nlme 399s spatstat.explore 3.3-4 399s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0) 399s > ALWAYS <- TRUE 399s > cat(paste("--------- Executing", 399s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of", 399s + "test code -----------\n")) 399s --------- Executing **RESTRICTED** subset of test code ----------- 399s > #' 399s > #' tests/density.R 399s > #' 399s > #' Test behaviour of density() methods, 399s > #' relrisk(), Smooth() 399s > #' and inhomogeneous summary functions 399s > #' and idw, adaptive.density, intensity 399s > #' and SpatialMedian, SpatialQuantile 399s > #' 399s > #' $Revision: 1.67 $ $Date: 2024/01/29 07:07:16 $ 399s > #' 399s > 399s > if(!FULLTEST) 399s + spatstat.options(npixel=32, ndummy.min=16) 399s > 399s > 399s > local({ 399s + 399s + # test all cases of density.ppp and densityfun.ppp 399s + 399s + tryit <- function(..., do.fun=TRUE, badones=FALSE) { 399s + Z <- density(cells, ..., at="pixels") 399s + Z <- density(cells, ..., at="points") 399s + if(do.fun) { 399s + f <- densityfun(cells, ...) 399s + U <- f(0.1, 0.3) 399s + if(badones) { 399s + U2 <- f(1.1, 0.3) 399s + U3 <- f(1.1, 0.3, drop=FALSE) 399s + } 399s + } 399s + return(invisible(NULL)) 399s + } 399s + 399s + if(ALWAYS) { 400s + tryit(0.05) 400s + tryit(0.05, diggle=TRUE) 400s + tryit(0.05, se=TRUE) 400s + tryit(0.05, weights=expression(x)) 400s + tryit(0.07, kernel="epa") 400s + tryit(sigma=Inf) 400s + tryit(0.05, badones=TRUE) 400s + } 400s + if(FULLTEST) { 400s + tryit(0.07, kernel="quartic") 400s + tryit(0.07, kernel="disc") 400s + tryit(0.07, kernel="epa", weights=expression(x)) 400s + tryit(sigma=Inf, weights=expression(x)) 400s + } 400s + 400s + V <- diag(c(0.05^2, 0.07^2)) 400s + 400s + if(ALWAYS) { 400s + tryit(varcov=V) 400s + } 400s + if(FULLTEST) { 400s + tryit(varcov=V, diggle=TRUE) 400s + tryit(varcov=V, weights=expression(x)) 400s + tryit(varcov=V, weights=expression(x), diggle=TRUE) 400s + Z <- distmap(runifpoint(5, Window(cells))) 400s + tryit(0.05, weights=Z) 400s + tryit(0.05, weights=Z, diggle=TRUE) 400s + } 400s + 400s + trymost <- function(...) tryit(..., do.fun=FALSE) 400s + wdf <- data.frame(a=1:42,b=42:1) 400s + if(ALWAYS) { 400s + trymost(0.05, weights=wdf) 400s + trymost(sigma=Inf, weights=wdf) 400s + } 400s + if(FULLTEST) { 400s + trymost(0.05, weights=wdf, diggle=TRUE) 400s + trymost(varcov=V, weights=wdf) 400s + trymost(varcov=V, weights=expression(cbind(x,y))) 400s + } 400s + 400s + ## check conservation of mass 400s + checkconserve <- function(X, xname, sigma, toler=0.01) { 400s + veritas <- npoints(X) 400s + vino <- integral(density(X, sigma, diggle=TRUE)) 400s + relerr <- abs(vino - veritas)/veritas 400s + if(relerr > toler) 400s + stop(paste("density.ppp(diggle=TRUE) fails to conserve mass:", 400s + vino, "!=", veritas, 400s + "for", sQuote(xname)), 400s + call.=FALSE) 400s + return(relerr) 400s + } 400s + if(FULLTEST) { 400s + checkconserve(cells, "cells", 0.15) 400s + } 400s + if(ALWAYS) { 400s + checkconserve(split(chorley)[["lung"]], "lung", 2) 400s + } 400s + 400s + ## run C algorithm 'denspt' 400s + opa <- spatstat.options(densityC=TRUE, densityTransform=FALSE) 400s + if(ALWAYS) { 400s + tryit(varcov=V) 400s + } 400s + if(FULLTEST) { 400s + tryit(varcov=V, weights=expression(x)) 400s + trymost(varcov=V, weights=wdf) 400s + } 400s + spatstat.options(opa) 400s + 400s + crossit <- function(..., sigma=NULL) { 400s + U <- runifpoint(20, Window(cells)) 400s + a <- densitycrossEngine(cells, U, ..., sigma=sigma) 400s + a <- densitycrossEngine(cells, U, ..., sigma=sigma, diggle=TRUE) 400s + invisible(NULL) 400s + } 400s + if(ALWAYS) { 400s + crossit(varcov=V, weights=cells$x) 400s + crossit(sigma=Inf) 400s + } 400s + if(FULLTEST) { 400s + crossit(varcov=V, weights=wdf) 400s + crossit(sigma=0.1, weights=wdf) 400s + crossit(sigma=0.1, kernel="epa", weights=wdf) 400s + } 400s + 400s + ## apply different discretisation rules 400s + if(ALWAYS) { 400s + Z <- density(cells, 0.05, fractional=TRUE) 400s + } 400s + if(FULLTEST) { 400s + Z <- density(cells, 0.05, preserve=TRUE) 400s + Z <- density(cells, 0.05, fractional=TRUE, preserve=TRUE) 400s + } 400s + 400s + ## compare results with different algorithms 400s + crosscheque <- function(expr) { 400s + e <- as.expression(substitute(expr)) 400s + ename <- sQuote(deparse(substitute(expr))) 400s + ## interpreted R 400s + opa <- spatstat.options(densityC=FALSE, densityTransform=FALSE) 400s + val.interpreted <- eval(e) 400s + ## established C algorithm 'denspt' 400s + spatstat.options(densityC=TRUE, densityTransform=FALSE) 400s + val.C <- eval(e) 400s + ## new C algorithm 'Gdenspt' using transformed coordinates 400s + spatstat.options(densityC=TRUE, densityTransform=TRUE) 400s + val.Transform <- eval(e) 400s + spatstat.options(opa) 400s + if(max(abs(val.interpreted - val.C)) > 0.001) 400s + stop(paste("Numerical discrepancy between R and C algorithms in", 400s + ename)) 400s + if(max(abs(val.C - val.Transform)) > 0.001) 400s + stop(paste("Numerical discrepancy between C algorithms", 400s + "using transformed and untransformed coordinates in", 400s + ename)) 400s + invisible(NULL) 400s + } 400s + 400s + ## execute & compare results of density(at="points") with different algorithms 400s + wdfr <- cbind(1:npoints(redwood), 2) 400s + if(ALWAYS) { 400s + crosscheque(density(redwood, at="points", sigma=0.13, edge=FALSE)) 400s + crosscheque(density(redwood, at="points", sigma=0.13, edge=FALSE, 400s + weights=wdfr[,1])) 400s + crosscheque(density(redwood, at="points", sigma=0.13, edge=FALSE, 400s + weights=wdfr)) 400s + } 400s + 400s + ## correctness of non-Gaussian kernel calculation 400s + leavein <- function(ker, maxd=0.025) { 400s + ZI <- density(redwood, 0.12, kernel=ker, edge=FALSE, 400s + dimyx=256)[redwood] 400s + ZP <- density(redwood, 0.12, kernel=ker, edge=FALSE, 400s + at="points", leaveoneout=FALSE) 400s + discrep <- max(abs(ZP - ZI))/npoints(redwood) 400s + if(discrep > maxd) 400s + stop(paste("Discrepancy", 400s + signif(discrep, 3), 400s + "in calculation for", ker, "kernel")) 400s + return(invisible(NULL)) 400s + } 400s + if(ALWAYS) { 400s + leavein("epanechnikov", 0.015) 400s + } 400s + if(FULLTEST) { 400s + leavein("quartic", 0.010) 400s + leavein("disc", 0.100) 400s + } 400s + 400s + ## bandwidth selection code blocks 400s + sigvec <- 0.01 * 2:15 400s + sigran <- range(sigvec) 400s + if(ALWAYS) { 400s + bw.ppl(redwood, sigma=sigvec) 400s + bw.CvL(redwood, sigma=sigvec) 400s + } 400s + if(FULLTEST) { 400s + bw.ppl(redwood, srange=sigran, ns=5) 400s + bw.CvL(redwood, srange=sigran, ns=5) 400s + } 400s + ## adaptive bandwidth 400s + if(ALWAYS) { 400s + a <- bw.abram(redwood) 400s + } 400s + if(FULLTEST) { 400s + a <- bw.abram(redwood, pilot=density(redwood, 0.2)) 400s + a <- bw.abram(redwood, smoother="densityVoronoi", at="pixels") 400s + } 400s + 400s + ## Kinhom 400s + if(ALWAYS) { 400s + lam <- density(redwood) 400s + K <- Kinhom(redwood, lam) 400s + 400s + lamX <- density(redwood, at="points") 400s + KX <- Kinhom(redwood, lamX) 400s + } 400s + 400s + ## test all code cases of new 'relrisk.ppp' algorithm 400s + pants <- function(..., X=ants, sigma=100, se=TRUE) { 400s + a <- relrisk(X, sigma=sigma, se=se, ...) 400s + return(TRUE) 400s + } 400s + if(ALWAYS) { 400s + pants() 400s + pants(diggle=TRUE) 400s + pants(edge=FALSE) 400s + pants(at="points") 400s + pants(casecontrol=FALSE) 400s + pants(relative=TRUE) 400s + pants(sigma=Inf) 400s + pants(sigma=NULL, varcov=diag(c(100,100)^2)) 400s + f <- 1/area(Window(ants)) 400s + pants(fudge=f) 400s + } 400s + if(FULLTEST) { 400s + pants(diggle=TRUE, at="points") 400s + pants(edge=FALSE, at="points", fudge=f) 400s + pants(casecontrol=FALSE, relative=TRUE) 400s + pants(casecontrol=FALSE,at="points") 400s + pants(relative=TRUE,at="points", fudge=f) 400s + pants(casecontrol=FALSE, relative=TRUE,at="points") 400s + pants(relative=TRUE, control="Cataglyphis", case="Messor", fudge=f) 400s + pants(relative=TRUE, control="Cataglyphis", case="Messor", at="points") 400s + pants(casecontrol=FALSE, case="Messor", se=FALSE) 400s + pants(case=2, at="pixels", relative=TRUE) 400s + pants(case=2, at="points", relative=TRUE) 400s + pants(case=2, at="pixels", relative=FALSE) 400s + pants(case=2, at="points", relative=FALSE) 400s + } 400s + if(ALWAYS) { 400s + ## underflow example from stackoverflow! 400s + funky <- scanpp("funky.tab", owin(c(4, 38), c(0.3, 17))) 400s + P <- relrisk(funky, 0.5) 400s + R <- relrisk(funky, 0.5, relative=TRUE) 400s + } 400s + ## more than 2 types 400s + if(ALWAYS) { 400s + pants(X=sporophores) 400s + pants(X=sporophores, sigma=20, at="points") 400s + pants(X=sporophores, sigma=20, at="points", fudge=f) 400s + bw.relrisk(sporophores, method="leastsquares") 400s + } 400s + if(FULLTEST) { 400s + pants(X=sporophores, sigma=20, relative=TRUE, at="points", fudge=f) 400s + pants(X=sporophores, sigma=20, at="pixels", se=FALSE) 400s + pants(X=sporophores, sigma=20, relative=TRUE, at="pixels", se=FALSE) 400s + bw.relrisk(sporophores, method="weightedleastsquares") 400s + } 400s + 400s + ## execute Smooth.ppp and Smoothfun.ppp in all cases 400s + stroke <- function(..., Y = longleaf, FUN=TRUE) { 400s + Z <- Smooth(Y, ..., at="pixels") 400s + Z <- Smooth(Y, ..., at="points", leaveoneout=TRUE) 400s + Z <- Smooth(Y, ..., at="points", leaveoneout=FALSE) 400s + if(FUN) { 400s + f <- Smoothfun(Y, ...) 400s + f(120, 80) 400s + f(Y[1:2]) 400s + f(Y[FALSE]) 400s + U <- as.im(f) 400s + } 400s + return(invisible(NULL)) 400s + } 400s + if(ALWAYS) { 400s + stroke() 400s + stroke(5, diggle=TRUE) 400s + stroke(5, geometric=TRUE) 400s + stroke(1e-6) # generates warning about small bandwidth 400s + stroke(5, weights=expression(x)) 400s + stroke(5, kernel="epa") 400s + stroke(sigma=Inf) 400s + stroke(varcov1=diag(c(1,1))) # 'anisotropic' code 400s + } 400s + if(FULLTEST) { 400s + Z <- as.im(function(x,y){abs(x)+1}, Window(longleaf)) 400s + stroke(5, weights=Z) 400s + stroke(5, weights=runif(npoints(longleaf))) 400s + stroke(varcov=diag(c(25, 36))) 400s + stroke(varcov=diag(c(25, 36)), weights=runif(npoints(longleaf))) 400s + stroke(5, Y=longleaf %mark% 1) 400s + stroke(5, Y=cut(longleaf,breaks=3)) 400s + stroke(5, weights=Z, geometric=TRUE) 400s + g <- function(x,y) { dnorm(x, sd=10) * dnorm(y, sd=10) } 400s + stroke(kernel=g, cutoff=30, FUN=FALSE) 400s + stroke(kernel=g, cutoff=30, scalekernel=TRUE, sigma=1, FUN=FALSE) 400s + } 400s + if(FULLTEST) { 400s + ## standard errors - single column of marks 400s + stroke(sigma=5, se=TRUE) 400s + stroke(sigma=5, se=TRUE, loctype="f") 400s + w <- runif(npoints(longleaf)) 400s + stroke(sigma=5, se=TRUE, weights=w, loctype="r", wtype="i") 400s + stroke(sigma=5, se=TRUE, weights=w, loctype="r", wtype="m") 400s + stroke(sigma=5, se=TRUE, weights=w, loctype="f", wtype="i") 400s + stroke(sigma=5, se=TRUE, weights=w, loctype="f", wtype="m") 400s + } 400s + 400s + niets <- markmean(longleaf, 9) 400s + 400s + strike <- function(..., Y=finpines) { 400s + Z <- Smooth(Y, ..., at="pixels") 400s + Z <- Smooth(Y, ..., at="points", leaveoneout=TRUE) 400s + Z <- Smooth(Y, ..., at="points", leaveoneout=FALSE) 400s + f <- Smoothfun(Y, ...) 400s + f(4, 1) 400s + f(Y[1:2]) 400s + f(Y[FALSE]) 400s + U <- as.im(f) 400s + return(invisible(NULL)) 400s + } 400s + if(ALWAYS) { 400s + strike() 400s + strike(sigma=1.5, kernel="epa") 400s + strike(varcov=diag(c(1.2, 2.1))) 400s + strike(sigma=1e-6) 400s + strike(sigma=Inf) 400s + } 400s + if(FULLTEST) { 400s + strike(sigma=1e-6, kernel="epa") 400s + strike(1.5, weights=runif(npoints(finpines))) 400s + strike(1.5, weights=expression(y)) 400s + strike(1.5, geometric=TRUE) 400s + strike(1.5, Y=finpines[FALSE]) 400s + flatfin <- finpines %mark% data.frame(a=rep(1, npoints(finpines)), b=2) 400s + strike(1.5, Y=flatfin) 400s + strike(1.5, Y=flatfin, geometric=TRUE) 400s + } 400s + if(FULLTEST) { 400s + ## standard errors - multivariate marks 400s + strike(sigma=1.5, se=TRUE) 400s + strike(sigma=1.5, se=TRUE, loctype="f") 400s + w <- runif(npoints(finpines)) 400s + strike(sigma=1.5, se=TRUE, weights=w, loctype="r", wtype="i") 400s + strike(sigma=1.5, se=TRUE, weights=w, loctype="r", wtype="m") 400s + strike(sigma=1.5, se=TRUE, weights=w, loctype="f", wtype="i") 400s + strike(sigma=1.5, se=TRUE, weights=w, loctype="f", wtype="m") 400s + } 400s + opx <- spatstat.options(densityTransform=FALSE) 400s + if(ALWAYS) { 400s + stroke(5, Y=longleaf[order(longleaf$x)], sorted=TRUE) 400s + } 400s + if(FULLTEST) { 400s + strike(1.5, Y=finpines[order(finpines$x)], sorted=TRUE) 400s + } 400s + spatstat.options(opx) 400s + 400s + ## detect special cases 400s + if(ALWAYS) { 400s + Smooth(longleaf[FALSE]) 400s + Smooth(longleaf, minnndist(longleaf)) 400s + Xconst <- cells %mark% 1 400s + Smooth(Xconst, 0.1) 400s + Smooth(Xconst, 0.1, at="points") 400s + Smooth(cells %mark% runif(42), sigma=Inf) 400s + Smooth(cells %mark% runif(42), sigma=Inf, at="points") 400s + Smooth(cells %mark% runif(42), sigma=Inf, at="points", leaveoneout=FALSE) 400s + Smooth(cut(longleaf, breaks=4)) 400s + } 400s + 400s + ## code not otherwise reached 400s + if(ALWAYS) { 400s + smoothpointsEngine(cells, values=rep(1, npoints(cells)), sigma=0.2) 400s + } 400s + if(FULLTEST) { 400s + smoothpointsEngine(cells, values=runif(npoints(cells)), sigma=Inf) 400s + smoothpointsEngine(cells, values=runif(npoints(cells)), sigma=1e-16) 400s + } 400s + 400s + ## validity of Smooth.ppp(at='points') 400s + Y <- longleaf %mark% runif(npoints(longleaf), min=41, max=43) 400s + Z <- Smooth(Y, 5, at="points", leaveoneout=TRUE) 400s + rZ <- range(Z) 400s + if(rZ[1] < 40 || rZ[2] > 44) 400s + stop("Implausible results from Smooth.ppp(at=points, leaveoneout=TRUE)") 400s + 400s + Z <- Smooth(Y, 5, at="points", leaveoneout=FALSE) 400s + rZ <- range(Z) 400s + if(rZ[1] < 40 || rZ[2] > 44) 400s + stop("Implausible results from Smooth.ppp(at=points, leaveoneout=FALSE)") 400s + 400s + ## compare Smooth.ppp results with different algorithms 400s + if(ALWAYS) { 400s + crosscheque(Smooth(longleaf, at="points", sigma=6)) 400s + wt <- runif(npoints(longleaf)) 400s + crosscheque(Smooth(longleaf, at="points", sigma=6, weights=wt)) 400s + } 400s + if(FULLTEST) { 400s + vc <- diag(c(25,36)) 400s + crosscheque(Smooth(longleaf, at="points", varcov=vc)) 400s + crosscheque(Smooth(longleaf, at="points", varcov=vc, weights=wt)) 400s + } 400s + ## drop-dimension coding errors 400s + if(FULLTEST) { 400s + X <- longleaf 400s + marks(X) <- cbind(marks(X), 1) 400s + Z <- Smooth(X, 5) 400s + 400s + ZZ <- bw.smoothppp(finpines, hmin=0.01, hmax=0.012, nh=2) # reshaping problem 400s + } 400s + 400s + ## geometric-mean smoothing 400s + if(ALWAYS) { 400s + U <- Smooth(longleaf, 5, geometric=TRUE) 400s + } 400s + if(FULLTEST) { 400s + UU <- Smooth(X, 5, geometric=TRUE) 400s + V <- Smooth(longleaf, 5, geometric=TRUE, at="points") 400s + VV <- Smooth(X, 5, geometric=TRUE, at="points") 400s + } 400s + 400s + if(FULLTEST) { 400s + ## isotropic and anisotropic cases of bw.smoothppp 400s + bi <- bw.smoothppp(longleaf) 400s + ba <- bw.smoothppp(longleaf, varcov1=diag(c(1,1))) 400s + ## should be equal 400s + if(abs(bi-ba) > 0.001) 400s + stop(paste("Inconsistency in bw.smoothppp: isotropic =", bi, 400s + "!=", ba, "= anisotropic")) 400s + } 400s + }) 403s > 403s > reset.spatstat.options() 403s > 403s > local({ 403s + if(ALWAYS) { 403s + #' Kmeasure, second.moment.engine 403s + #' Expansion of window 403s + Zno <- Kmeasure(redwood, sigma=0.2, expand=FALSE) 403s + Zyes <- Kmeasure(redwood, sigma=0.2, expand=TRUE) 403s + #' All code blocks 403s + sigmadouble <- rep(0.1, 2) 403s + diagmat <- diag(sigmadouble^2) 403s + generalmat <- matrix(c(1, 0.5, 0.5, 1)/100, 2, 2) 403s + Z <- Kmeasure(redwood, sigma=sigmadouble) 403s + Z <- Kmeasure(redwood, varcov=diagmat) 403s + Z <- Kmeasure(redwood, varcov=generalmat) 403s + A <- second.moment.calc(redwood, 0.1, what="all", debug=TRUE) 403s + B <- second.moment.calc(redwood, varcov=diagmat, what="all") 403s + B <- second.moment.calc(redwood, varcov=diagmat, what="all") 403s + D <- second.moment.calc(redwood, varcov=generalmat, what="all") 403s + PR <- pixellate(redwood) 403s + DRno <- second.moment.calc(PR, 0.2, debug=TRUE, expand=FALSE, 403s + npts=npoints(redwood), obswin=Window(redwood)) 403s There were 22 warnings (use warnings() to see them) 403s + DRyes <- second.moment.calc(PR, 0.2, debug=TRUE, expand=TRUE, 403s + npts=npoints(redwood), obswin=Window(redwood)) 403s + DR2 <- second.moment.calc(solist(PR, PR), 0.2, debug=TRUE, expand=TRUE, 403s + npts=npoints(redwood), obswin=Window(redwood)) 403s + Gmat <- generalmat * 100 403s + isoGauss <- function(x,y) {dnorm(x) * dnorm(y)} 403s + ee <- evaluate2Dkernel(isoGauss, runif(10), runif(10), 403s + varcov=Gmat, scalekernel=TRUE) 403s + isoGaussIm <- as.im(isoGauss, square(c(-3,3))) 403s + gg <- evaluate2Dkernel(isoGaussIm, runif(10), runif(10), 403s + varcov=Gmat, scalekernel=TRUE) 403s + ## experimental code 403s + op <- spatstat.options(developer=TRUE) 403s + DR <- density(redwood, 0.1) 403s + spatstat.options(op) 403s + } 403s + }) 403s smooth: maximum imaginary part= 4.97e-18 403s smooth: mass error= 0 403s 2nd moment measure: maximum imaginary part= 1.22e-16 403s 2nd moment measure: mass error= 0 403s smooth: maximum imaginary part= 2.39e-18 403s smooth: mass error= 0 403s 2nd moment measure: maximum imaginary part= 9.09e-17 403s 2nd moment measure: mass error= 0 403s smooth: maximum imaginary part= 6.82e-18 403s smooth: mass error= -2.13e-14 403s 2nd moment measure: maximum imaginary part= 4.07e-16 403s 2nd moment measure: mass error= 1.82e-12 403s smooth component 1 : maximum imaginary part= 6.82e-18 403s smooth component 1 : mass error= -2.13e-14 403s smooth component 2 : maximum imaginary part= 6.82e-18 403s smooth component 2 : mass error= -2.13e-14 403s 2nd moment measure: maximum imaginary part= 4.07e-16 403s 2nd moment measure: mass error= 1.82e-12 403s 2nd moment measure: maximum imaginary part= 4.07e-16 403s 2nd moment measure: mass error= 1.82e-12 404s > 404s > local({ 404s + if(FULLTEST) { 404s + #' bandwidth selection 404s + op <- spatstat.options(n.bandwidth=8) 404s + bw.diggle(cells) 404s + bw.diggle(cells, method="interpreted") # undocumented test 404s + ## bw.relrisk(urkiola, hmax=20) is tested in man/bw.relrisk.Rd 404s + bw.relrisk(urkiola, hmax=20, method="leastsquares") 404s + bw.relrisk(urkiola, hmax=20, method="weightedleastsquares") 404s + ZX <- density(swedishpines, at="points") 404s + bw.pcf(swedishpines, lambda=ZX) 404s + bw.pcf(swedishpines, lambda=ZX, 404s + bias.correct=FALSE, simple=FALSE, cv.method="leastSQ") 404s + spatstat.options(op) 404s + } 404s + }) 404s > 404s > local({ 404s + if(FULLTEST) { 404s + ## idw 404s + Z <- idw(longleaf, power=4) 404s + Z <- idw(longleaf, power=4, se=TRUE) 404s + ZX <- idw(longleaf, power=4, at="points") 404s + ZX <- idw(longleaf, power=4, at="points", se=TRUE) 404s + } 404s + if(ALWAYS) { 404s + ## former bug in densityVoronoi.ppp 404s + X <- redwood[1:2] 404s + A <- densityVoronoi(X, f=0.51, counting=FALSE, fixed=FALSE, nrep=50, verbose=FALSE) 404s + ## dodgy code blocks in densityVoronoi.R 404s + A <- adaptive.density(nztrees, nrep=2, f=0.5, counting=TRUE) 404s + B <- adaptive.density(nztrees, nrep=2, f=0.5, counting=TRUE, fixed=TRUE) 404s + D <- adaptive.density(nztrees, nrep=2, f=0.5, counting=FALSE) 404s + E <- adaptive.density(nztrees, nrep=2, f=0.5, counting=FALSE, fixed=TRUE) 404s + } 404s + if(FULLTEST) { 404s + #' adaptive kernel estimation 404s + d10 <- nndist(nztrees, k=10) 404s + d10fun <- distfun(nztrees, k=10) 404s + d10im <- as.im(d10fun) 404s + uN <- 2 * runif(npoints(nztrees)) 404s + AA <- densityAdaptiveKernel(nztrees, bw=d10) 404s + BB <- densityAdaptiveKernel(nztrees, bw=d10, weights=uN) 404s + DD <- densityAdaptiveKernel(nztrees, bw=d10fun, weights=uN) 404s + EE <- densityAdaptiveKernel(nztrees, bw=d10im, weights=uN) 404s + } 404s + }) 404s Computing 2 intensity estimates...1, 404s 2. 404s Done. 404s Computing 2 intensity estimates...1, 404s 2. 404s Done. 404s Computing 2 intensity estimates...1, 404s 2. 404s Done. 404s Computing 2 intensity estimates...1, 404s 2. 404s Done. 404s > 404s > local({ 404s + if(FULLTEST) { 404s + ## cases of 'intensity' etc 404s + a <- intensity(amacrine, weights=expression(x)) 404s + SA <- split(amacrine) 404s + a <- intensity(SA, weights=expression(x)) 404s + a <- intensity(SA, weights=amacrine$x) 404s + 404s + ## check infrastructure for 'densityfun' 404s + f <- densityfun(cells, 0.05) 404s + Z <- as.im(f) 404s + Z <- as.im(f, W=square(0.5)) 404s + } 404s + }) 404s > 404s > local({ 404s + if(FULLTEST) { 404s + ## other cases of SpatialQuantile.ppp 404s + X <- longleaf 404s + marks(X) <- round(marks(X), -1) 404s + Z <- SpatialMedian(X, 30, type=4) 404s + ZX <- SpatialMedian(X, 30, type=4, at="points") 404s + ZXP <- SpatialMedian(X, 30, at="points", leaveoneout=FALSE) 404s + } 404s + }) 404s > 404s > 404s > 404s > reset.spatstat.options() 404s > 404s > 404s BEGIN TEST testsEtoF.R 404s 404s R version 4.4.3 (2025-02-28) -- "Trophy Case" 404s Copyright (C) 2025 The R Foundation for Statistical Computing 404s Platform: x86_64-pc-linux-gnu 404s 404s R is free software and comes with ABSOLUTELY NO WARRANTY. 404s You are welcome to redistribute it under certain conditions. 404s Type 'license()' or 'licence()' for distribution details. 404s 404s R is a collaborative project with many contributors. 404s Type 'contributors()' for more information and 404s 'citation()' on how to cite R or R packages in publications. 404s 404s Type 'demo()' for some demos, 'help()' for on-line help, or 404s 'help.start()' for an HTML browser interface to help. 404s Type 'q()' to quit R. 404s 404s > #' 404s > #' Header for all (concatenated) test files 404s > #' 404s > #' Require spatstat.explore 404s > #' Obtain environment variable controlling tests. 404s > #' 404s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $ 404s > 404s > require(spatstat.explore) 404s Loading required package: spatstat.explore 404s Loading required package: spatstat.data 405s Loading required package: spatstat.univar 405s spatstat.univar 3.1-1 405s Loading required package: spatstat.geom 405s spatstat.geom 3.3-5 405s Loading required package: spatstat.random 405s spatstat.random 3.3-2 405s Loading required package: nlme 405s spatstat.explore 3.3-4 405s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0) 405s > ALWAYS <- TRUE 405s > cat(paste("--------- Executing", 405s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of", 405s + "test code -----------\n")) 405s --------- Executing **RESTRICTED** subset of test code ----------- 405s > # 405s > # tests/envelopes.R 405s > # 405s > # Test validity of envelope data 406s > # 406s > # $Revision: 1.29 $ $Date: 2024/01/10 13:45:29 $ 406s > # 406s > 406s > local({ 406s + 406s + 406s + 406s + ## check envelope calls from 'alltypes' 406s + if(ALWAYS) a <- alltypes(demopat, Kcross, nsim=4, envelope=TRUE) 406s + if(FULLTEST) b <- alltypes(demopat, Kcross, nsim=4, envelope=TRUE, global=TRUE) 406s + ## check 'transform' idioms 406s + if(ALWAYS) A <- envelope(cells, Kest, nsim=4, transform=expression(. - .x)) 406s + if(FULLTEST) B <- envelope(cells, Kest, nsim=4, transform=expression(sqrt(./pi) - .x)) 406s + 406s + 406s + # check conditional simulation 406s + if(FULLTEST) { 406s + e1 <- envelope(cells, Kest, nsim=4, fix.n=TRUE) 406s + e2 <- envelope(amacrine, Kest, nsim=4, fix.n=TRUE) 406s + e3 <- envelope(amacrine, Kcross, nsim=4, fix.marks=TRUE) 406s + e4 <- envelope(finpines, Kest, nsim=4, fix.n=TRUE) # multiple columns of marks 406s + e5 <- envelope(finpines, Kest, nsim=4, fix.marks=TRUE) 406s + } 406s + 406s + 406s + ## check pooling of envelopes in global case 406s + E1 <- envelope(cells, Kest, nsim=5, savefuns=TRUE, global=TRUE) 406s + E2 <- envelope(cells, Kest, nsim=12, savefuns=TRUE, global=TRUE) 406s + p12 <- pool(E1, E2) 406s + p12 <- pool(E1, E2, savefuns=TRUE) 406s + if(FULLTEST) { 406s + F1 <- envelope(cells, Kest, nsim=5, 406s + savefuns=TRUE, savepatterns=TRUE, global=TRUE) 406s + F2 <- envelope(cells, Kest, nsim=12, 406s + savefuns=TRUE, savepatterns=TRUE, global=TRUE) 406s + p12 <- pool(F1, F2) 406s + p12 <- pool(F1, F2, savefuns=TRUE, savepatterns=TRUE) 406s + E1r <- envelope(cells, Kest, nsim=5, savefuns=TRUE, global=TRUE, 406s + ginterval=c(0.05, 0.15)) 406s + E2r <- envelope(cells, Kest, nsim=12, savefuns=TRUE, global=TRUE, 406s + ginterval=c(0.05, 0.15)) 406s + p12r <- pool(E1r, E2r) 406s + } 406s + 406s + if(FULLTEST) { 406s + #' as.data.frame.envelope 406s + Nsim <- 5 406s + E <- envelope(cells, nsim=Nsim, savefuns=TRUE) 406s + A <- as.data.frame(E) 406s + B <- as.data.frame(E, simfuns=TRUE) 406s + stopifnot(ncol(B) - ncol(A) == Nsim) 406s + } 406s + 406s + if(FULLTEST) { 406s + #' cases not covered elsewhere 406s + A <- envelope(cells, nsim=5, alternative="less", 406s + do.pwrong=TRUE, use.theory=FALSE, 406s + savepatterns=TRUE, savefuns=TRUE) 406s + print(A) 406s + B <- envelope(A, nsim=5, savefuns=TRUE) 406s + D <- envelope(cells, "Lest", nsim=5) 406s + 406s + UU <- envelope(cells, nsim=5, foreignclass="ppp", clipdata=TRUE) 406s + 406s + AA <- envelope(cells, nsim=5, jsim=5, alternative="greater", global=TRUE) 406s + AA <- envelope(cells, nsim=5, jsim=5, alternative="less", global=TRUE) 406s + AA <- envelope(cells, nsim=5, jsim=5, alternative="greater", VARIANCE=TRUE) 406s + AA <- envelope(cells, nsim=5, jsim=5, alternative="greater", VARIANCE=TRUE) 406s + 406s + #' spotted by Art Stock - bugs in ratfv class support 406s + BB <- envelope(redwood, Kinhom, nsim=5, sigma=bw.scott, ratio=TRUE, correction="border") 406s + CC <- envelope(redwood, Kinhom, nsim=5, sigma=bw.scott, global=TRUE, ratio=TRUE, correction="border") 406s + DD <- envelope(redwood, Finhom, nsim=5, sigma=bw.scott, ratio=TRUE, correction="trans") 406s + EE <- envelope(redwood, Finhom, nsim=5, sigma=bw.scott, global=TRUE, ratio=TRUE, correction="trans") 406s + 406s + #' envelopes based on sample variance 406s + E <- envelope(cells, nsim=8, VARIANCE=TRUE) 406s + G <- envelope(cells, nsim=8, VARIANCE=TRUE, 406s + use.theory=FALSE, do.pwrong=TRUE) 406s + print(G) 406s + #' summary method 406s + summary(E) 406s + summary(envelope(cells, nsim=5, simulate=expression(runifpoint(42)))) 406s + #' weights argument 406s + H1 <- envelope(cells, nsim=4, weights=npoints, savefuns=TRUE) 406s + H2 <- envelope(cells, nsim=4, weights=npoints, savefuns=TRUE) 406s + J1 <- envelope(cells, nsim=4, weights=npoints, VARIANCE=TRUE) 406s + J2 <- envelope(cells, nsim=4, weights=npoints, VARIANCE=TRUE) 406s + #' pooling with weights 406s + H <- pool(H1, H2) 406s + J <- pool(J1, J2) 406s + #' pooling envelopes with non-identical attributes 406s + H0 <- envelope(cells, nsim=4, savefuns=TRUE) 406s + HH <- pool(H0, H1) 406s + #' malformed argument 'simulate' 406s + A <- replicate(3, list(list(runifpoint(ex=cells)))) # list(list(ppp), list(ppp), list(ppp)) 406s + E <- envelope(cells, simulate=A, nsim=3) 406s + #' undocumented/secret 406s + K <- envelope(cells, nsim=4, saveresultof=npoints, collectrubbish=TRUE) 406s + #' so secret I've even forgotten how to do it 406s + M <- envelope(cells, nsim=4, internal=list(eject="patterns")) 406s + } 406s + 406s + 406s + if(ALWAYS) { 406s + #' Test robustness of envelope() sorting procedure when NA's are present 406s + #' Fails with spatstat.utils 1.12-0 406s + set.seed(42) 406s + EP <- envelope(longleaf, pcf, nsim=10, nrank=2) 406s + 406s + #' Test case when the maximum permitted number of failures is exceeded 406s + X <- amacrine[1:153] # contains exactly one point with mark='off' 406s + #' High probability of generating a pattern with no marks = 'off' 406s + E <- envelope(X, Kcross, nsim=39, maxnerr=2, maxerr.action="warn") 406s + A <- alltypes(X, Kcross, envelope=TRUE, nsim=39, maxnerr=2) 406s + } 406s + 406s + if(ALWAYS) { 406s + #' Internals: envelope.matrix 406s + Y <- matrix(rnorm(200), 10, 20) 406s + rr <- 1:10 406s + oo <- rnorm(10) 406s + zz <- numeric(10) 406s + E <- envelope(Y, rvals=rr, observed=oo, nsim=10) 406s + E <- envelope(Y, rvals=rr, observed=oo, jsim=1:10) 406s + E <- envelope(Y, rvals=rr, observed=oo, theory=zz, 406s + type="global", use.theory=TRUE) 406s + E <- envelope(Y, rvals=rr, observed=oo, theory=zz, 406s + type="global", use.theory=TRUE, nsim=10) 406s + E <- envelope(Y, rvals=rr, observed=oo, theory=zz, 406s + type="global", use.theory=FALSE, nsim=10) 406s + E <- envelope(Y, rvals=rr, observed=oo, type="global", 406s + nsim=10, nsim2=10) 406s + E <- envelope(Y, rvals=rr, observed=oo, type="global", 406s + jsim=1:10, jsim.mean=11:20) 406s + if(FULLTEST) print(E) 406s + E <- envelope(Y, rvals=rr, observed=oo, type="global", 406s + nsim=10, jsim.mean=11:20) 406s + E <- envelope(Y, rvals=rr, observed=oo, type="global", 406s + jsim=1:10, nsim2=10) 406s + } 406s + 406s + if(ALWAYS) { 406s + #' quirk with handmade summary functions ('conserve' attribute) 406s + Kdif <- function(X, r=NULL) { # note no ellipsis 406s + Y <- split(X) 406s + K1 <- Kest(Y[[1]], r=r) 406s + K2 <- Kest(Y[[2]], r=r) 406s + D <- eval.fv(K1-K2) 406s + return(D) 406s + } 406s + envelope(amacrine, Kdif, nsim=3) 406s + } 406s + 406s + 406s + ## close 'local' 406s + }) 406s Generating 4 simulations of CSR ... 406s 1, 2, 3, 406s 4. 406s 406s Done. 406s Generating 5 simulations of CSR ... 406s 1, 2, 3, 4, 406s 5. 406s 406s Done. 406s Generating 12 simulations of CSR ... 406s 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 406s 12. 406s 406s Done. 406s Generating 10 simulations of CSR ... 406s 1, 2, 3, 4, 5, 6, 7, 8, 9, 406s 10. 406s 406s Done. 406s Error in (function (X, i, j, r = NULL, breaks = NULL, correction = c("border", : 406s No points have mark i = off 406s Generating 39 simulations of CSR ... 406s [retrying] 407s 1, 2, 3, Error in (function (X, i, j, r = NULL, breaks = NULL, correction = c("border", : 407s No points have mark i = off 407s 4, [retrying] 407s 5, 6, Error in (function (X, i, j, r = NULL, breaks = NULL, correction = c("border", : 407s No points have mark i = off 407s 407s Done. 407s Generating 3 simulations of CSR ... 407s 1, 2, 407s 3. 407s 407s Done. 407s Pointwise critical envelopes for K1(r)-K2(r) 407s and observed value for ‘amacrine’ 407s Edge correction: “iso” 407s Obtained from 3 simulations of CSR 407s Alternative: two.sided 407s Significance level of pointwise Monte Carlo test: 2/4 = 0.5 407s ................................................................................ 407s Math.label 407s r r 407s obs hat((K1-K2))[obs](r) 407s theo (K1-K2)[theo](r) 407s lo hat((K1-K2))[lo](r) 407s hi hat((K1-K2))[hi](r) 407s Description 407s r distance argument r 407s obs observed value of K1(r)-K2(r) for data pattern 407s theo theoretical value of K1(r)-K2(r) for CSR 407s lo lower pointwise envelope of K1(r)-K2(r) from simulations 407s hi upper pointwise envelope of K1(r)-K2(r) from simulations 407s ................................................................................ 407s Default plot formula: .~r 407s where “.” stands for ‘obs’, ‘theo’, ‘hi’, ‘lo’ 407s Columns ‘lo’ and ‘hi’ will be plotted as shading (by default) 407s Recommended range of argument r: [0, 0.25] 407s Available range of argument r: [0, 0.25] 407s Unit of length: 662 microns 407s > # 407s > # tests/fastK.R 407s > # 407s > # check fast and slow code for Kest 407s > # and options not tested elsewhere 407s > # 407s > # $Revision: 1.5 $ $Date: 2020/04/28 12:58:26 $ 407s > # 407s > if(ALWAYS) { 407s + local({ 407s + ## fast code 407s + Kb <- Kest(cells, nlarge=0) 407s + Ku <- Kest(cells, correction="none") 407s + Kbu <- Kest(cells, correction=c("none", "border")) 407s + ## slow code, full set of corrections, sqrt transformation, ratios 407s + Ldd <- Lest(unmark(demopat), correction="all", var.approx=TRUE, ratio=TRUE) 407s + ## Lotwick-Silverman var approx (rectangular window) 407s + Loo <- Lest(cells, correction="all", var.approx=TRUE, ratio=TRUE) 407s + ## Code for large dataset 407s + nbig <- .Machine$integer.max 407s + if(!is.null(nbig)) { 407s + nn <- ceiling(sqrt(nbig)) 407s + if(nn < 1e6) Kbig <- Kest(runifpoint(nn), 407s + correction=c("border", "bord.modif", "none"), 407s + ratio=TRUE) 407s + } 407s + 407s + ## Kinhom 407s + lam <- density(cells, at="points", leaveoneout=TRUE) 407s + ## fast code 407s + Kib <- Kinhom(cells, lam, nlarge=0) 407s + Kiu <- Kest(cells, lam, correction="none") 407s + Kibu <- Kest(cells, lam, correction=c("none", "border")) 407s + ## slow code 407s + Lidd <- Linhom(unmark(demopat), sigma=bw.scott) 407s + }) 407s + 407s + } 407s Warning messages: 407s 1: Exceeded maximum permissible number of (maxnerr = 2) when evaluating summary function for simulated point patterns 407s 2: In alltypes(X, Kcross, envelope = TRUE, nsim = 39, maxnerr = 2) : 407s 3 out of 4 envelopes were not computed, due to errors in evaluating the summary functions for simulated patterns 407s number of data points exceeds 0 - computing border correction estimate only 410s number of data points exceeds 0 - computing border correction estimate only 411s > ## 411s > ## tests/fvproblems.R 411s > ## 411s > ## problems with fv, ratfv and fasp code 411s > ## 411s > ## $Revision: 1.15 $ $Date: 2020/04/28 12:58:26 $ 411s > 411s > #' This appears in the workshop notes 411s > #' Problem detected by Martin Bratschi 411s > 411s > if(FULLTEST) { 411s + Warning message: 411s Periodic correction is not defined for non-rectangular windows 411s local({ 411s + Jdif <- function(X, ..., i) { 411s + Jidot <- Jdot(X, ..., i=i) 411s + J <- Jest(X, ...) 411s + dif <- eval.fv(Jidot - J) 411s + return(dif) 411s + } 411s + Z <- Jdif(amacrine, i="on") 411s + }) 411s + } 411s > #' 411s > #' Test mathlegend code 411s > #' 411s > local({ 411s + K <- Kest(cells) 411s + if(FULLTEST) { 411s + plot(K) 411s + plot(K, . ~ r) 411s + plot(K, . - theo ~ r) 411s + } 411s + if(ALWAYS) { 411s + plot(K, sqrt(./pi) ~ r) 411s + } 411s + if(FULLTEST) { 411s + plot(K, cbind(iso, theo) ~ r) 411s + plot(K, cbind(iso, theo) - theo ~ r) 411s + plot(K, sqrt(cbind(iso, theo)/pi) ~ r) 411s + plot(K, cbind(iso/2, -theo) ~ r) 411s + plot(K, cbind(iso/2, trans/2) - theo ~ r) 411s + } 411s + if(FULLTEST) { 411s + ## test expansion of .x and .y 411s + plot(K, . ~ .x) 411s + plot(K, . - theo ~ .x) 411s + plot(K, .y - theo ~ .x) 411s + } 411s + if(ALWAYS) { 411s + plot(K, sqrt(.y) - sqrt(theo) ~ .x) 411s + } 411s + 411s + # problems with parsing weird strings in levels(marks(X)) 411s + # noted by Ulf Mehlig 411s + if(ALWAYS) { 411s + levels(marks(amacrine)) <- c("Nasticreechia krorluppia", "Homo habilis") 411s + plot(Kcross(amacrine)) 411s + plot(alltypes(amacrine, "K")) 411s + } 411s + if(FULLTEST) { 411s + plot(alltypes(amacrine, "J")) 411s + plot(alltypes(amacrine, pcfcross)) 411s + } 411s + }) 411s > 411s > #' 411s > #' Test quirks related to 'alim' attribute 411s > 411s > if(FULLTEST) { 411s + local({ 411s + K <- Kest(cells) 411s + attr(K, "alim") <- NULL 411s + plot(K) 411s + attr(K, "alim") <- c(0, 0.1) 411s + plot(tail(K)) 411s + }) 411s + } 411s > 411s > #' 411s > #' Check that default 'r' vector passes the test for fine spacing 411s > 411s > if(ALWAYS) { 411s + local({ 411s + a <- Fest(cells) 411s + A <- Fest(cells, r=a$r) 411s + b <- Hest(heather$coarse) 411s + B <- Hest(heather$coarse, r=b$r) 411s + # from Cenk Icos 411s + X <- runifpoint(100, owin(c(0,3), c(0,10))) 411s + FX <- Fest(X) 411s + FXr <- Fest(X, r=FX$r) 411s + JX <- Jest(X) 411s + }) 411s + } 411s > 411s > ##' various functionality in fv.R 411s > 411s > if(ALWAYS) { 411s + local({ 411s + M <- cbind(1:20, matrix(runif(100), 20, 5)) 411s + A <- as.fv(M) 411s + fvlabels(A) <- c("r","%s(r)", "%s[A](r)", "%s[B](r)", "%s[C](r)", "%s[D](r)") 411s + A <- rename.fv(A, "M", quote(M(r))) 411s + A <- tweak.fv.entry(A, "V1", new.tag="r") 411s + A[,3] <- NULL 411s + A$hogwash <- runif(nrow(A)) 411s + fvnames(A, ".") <- NULL 411s + #' bind.fv with qualitatively different functions 411s + GK <- harmonise(G=Gest(cells), K=Kest(cells)) 411s + G <- GK$G 411s + K <- GK$K 411s + ss <- c(rep(TRUE, nrow(K)-10), rep(FALSE, 10)) 411s + U <- bind.fv(G, K[ss, ], clip=TRUE) 411s + #' 411s + H <- rebadge.as.crossfun(K, "H", "inhom", 1, 2) 411s + H <- rebadge.as.dotfun(K, "H", "inhom", 3) 411s + #' text layout 411s + op <- options(width=27) 411s + print(K) 411s + options(width=18) 411s + print(K) 411s + options(op) 411s + #' collapse.fv 411s + Kb <- Kest(cells, correction="border") 411s + Ki <- Kest(cells, correction="isotropic") 411s + collapse.fv(Kb, Ki, same="theo") 411s + collapse.fv(anylist(B=Kb, I=Ki), same="theo") 411s + collapse.fv(anylist(B=Kb), I=Ki, same="theo") 411s + Xlist <- replicate(3, runifpoint(30), simplify=FALSE) 411s + Klist <- anylapply(Xlist, Kest) 411s + collapse.fv(Klist, same="theo", different=c("iso", "border")) 411s + names(Klist) <- LETTERS[24:26] 411s + collapse.fv(Klist, same="theo", different=c("iso", "border")) 411s + }) 411s + } 411s Function value object 411s (class ‘fv’) 411s for the function r -> K(r) 411s ........................... 411s Math.label 411s r r 411s theo K[pois](r) 411s border hat(K)[bord](r) 411s trans hat(K)[trans](r) 411s iso hat(K)[iso](r) 411s Description 411s r distance argument r 411s theo theoretical [..] 411s border [..] 411s trans [..] 411s iso [..] 411s ........................... 411s Default plot formula: .~r 411s where “.” stands for 411s ‘iso’, ‘trans’, 411s ‘border’, ‘theo’ 411s Recommended range of 411s argument r: [0, 0.25] 411s Available range of 411s argument r: [0, 0.25] 411s Function value 411s object (class 411s ‘fv’) 411s for the function 411s r -> K(r) 411s .................. 411s Math.label 411s r r 411s theo K[pois](r) 411s border hat(K)[bord](r) 411s trans hat(K)[trans](r) 411s iso hat(K)[iso](r) 411s Description 411s r [..] 411s theo [..] 411s border [..] 411s trans [..] 411s iso [..] 411s .................. 411s Default plot 411s formula: .~r 411s where “.” 411s stands for 411s ‘iso’, 411s ‘trans’, 411s ‘border’, 411s ‘theo’ 411s Recommended range 411s of argument r: 411s [0, 0.25] 411s Available range 411s of argument r: 411s [0, 0.25] 411s Function value object (class ‘fv’) 411s for the function r -> K(r) 411s ................................................................ 411s Math.label Description 411s r r distance argument r 411s theo K[pois](r) theoretical Poisson K(r) 411s Xborder X~hat(K)[bord](r) X border-corrected estimate of K(r) 411s Xiso X~hat(K)[iso](r) X isotropic-corrected estimate of K(r) 411s Yborder Y~hat(K)[bord](r) Y border-corrected estimate of K(r) 411s Yiso Y~hat(K)[iso](r) Y isotropic-corrected estimate of K(r) 411s Zborder Z~hat(K)[bord](r) Z border-corrected estimate of K(r) 411s Ziso Z~hat(K)[iso](r) Z isotropic-corrected estimate of K(r) 411s ................................................................ 411s Default plot formula: .~.x 411s where “.” stands for ‘theo’, ‘Xborder’, ‘Xiso’, ‘Yborder’, 411s ‘Yiso’, ‘Zborder’, ‘Ziso’ 411s Recommended range of argument r: [0, 0.25] 411s Available range of argument r: [0, 0.25] 411s > 411s > if(FULLTEST) { 411s + local({ 411s + ## rat 411s + K <- Kest(cells, ratio=TRUE) 411s + G <- Gest(cells, ratio=TRUE) 411s + print(K) 411s + compatible(K, K) 411s + compatible(K, G) 411s + H <- rat(K, attr(K, "numerator"), attr(K, "denominator"), check=TRUE) 411s + }) 411s + } 411s > 411s > if(FULLTEST) { 411s + local({ 411s + ## bug in Jmulti.R colliding with breakpts.R 411s + B <- owin(c(0,3), c(0,10)) 411s + Y <- superimpose(A=runifpoint(1212, B), B=runifpoint(496, B)) 411s + JDX <- Jdot(Y) 411s + JCX <- Jcross(Y) 411s + Jdif <- function(X, ..., i) { 411s + Jidot <- Jdot(X, ..., i=i) 411s + J <- Jest(X, ...) 411s + dif <- eval.fv(Jidot - J) 411s + return(dif) 411s + } 411s + E <- envelope(Y, Jdif, nsim=19, i="A", simulate=expression(rlabel(Y))) 411s + }) 411s + } 411s > 411s > if(FULLTEST) { 411s + local({ 411s + #' fasp axes, title, dimnames 411s + a <- alltypes(amacrine) 411s + a$title <- NULL 411s + plot(a, samex=TRUE, samey=TRUE) 411s + dimnames(a) <- lapply(dimnames(a), toupper) 411s + 411s + b <- as.fv(a) 411s + }) 411s + } 411s > 411s > if(FULLTEST) { 411s + local({ 411s + ## plot.anylist (fv) 411s + b <- anylist(A=Kcross(amacrine), B=Kest(amacrine)) 411s + plot(b, equal.scales=TRUE, main=expression(sqrt(pi))) 411s + plot(b, arrange=FALSE) 411s + }) 411s + } 411s > 411s Warning message: 411s In bind.fv(G, K[ss, ], clip = TRUE) : 411s The column name ‘theo’ was duplicated. Unique names were generated 411s BEGIN TEST testsGtoJ.R 411s 411s R version 4.4.3 (2025-02-28) -- "Trophy Case" 411s Copyright (C) 2025 The R Foundation for Statistical Computing 411s Platform: x86_64-pc-linux-gnu 411s 411s R is free software and comes with ABSOLUTELY NO WARRANTY. 411s You are welcome to redistribute it under certain conditions. 411s Type 'license()' or 'licence()' for distribution details. 411s 411s R is a collaborative project with many contributors. 411s Type 'contributors()' for more information and 411s 'citation()' on how to cite R or R packages in publications. 411s 411s Type 'demo()' for some demos, 'help()' for on-line help, or 411s 'help.start()' for an HTML browser interface to help. 411s Type 'q()' to quit R. 411s 411s > #' 411s > #' Header for all (concatenated) test files 411s > #' 411s > #' Require spatstat.explore 411s > #' Obtain environment variable controlling tests. 411s > #' 411s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $ 411s > 411s > require(spatstat.explore) 411s Loading required package: spatstat.explore 411s Loading required package: spatstat.data 412s Loading required package: spatstat.univar 412s spatstat.univar 3.1-1 412s Loading required package: spatstat.geom 412s spatstat.geom 3.3-5 412s Loading required package: spatstat.random 412s spatstat.random 3.3-2 412s Loading required package: nlme 412s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0) 412s > ALWAYS <- TRUE 412s > cat(paste("--------- Executing", 412s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of", 412s + "test code -----------\n")) 412s --------- Executing **RESTRICTED** subset of test code ----------- 412s > ## 412s > ## tests/gcc323.R 412s > ## 412s spatstat.explore 3.3-4 412s > ## $Revision: 1.3 $ $Date: 2020/04/28 12:58:26 $ 412s > ## 412s > if(ALWAYS) { # depends on hardware 412s + local({ 412s + # critical R values that provoke GCC bug #323 412s + a <- marktable(lansing, R=0.25) 412s + a <- marktable(lansing, R=0.21) 412s + a <- marktable(lansing, R=0.20) 412s + a <- marktable(lansing, R=0.10) 412s + }) 412s + } 413s > #' tests/hypotests.R 413s > #' Hypothesis tests 413s > #' 413s > #' $Revision: 1.10 $ $Date: 2023/07/17 07:30:48 $ 413s > 413s > if(FULLTEST) { 413s + local({ 413s + 413s + hopskel.test(redwood, method="MonteCarlo", nsim=5) 413s + 413s + #' quadrat test - spatial methods 413s + a <- quadrat.test(redwood, 3) 413s + domain(a) 413s + shift(a, c(1,1)) 413s + 413s + #' quadrat test - correctness of mapping from table to quadrats 413s + Q2 <- quadratcount(humberside, 2, 3) 413s + T2 <- suppressWarnings(quadrat.test(Q2)) 413s + R2 <- cbind(as.numeric(t(Q2)), round(10 * residuals(T2))) 413s + R2correct <- cbind(c(2, 20, 13, 11, 34, 123), 413s + c(-46, -12, -62, -41, 50, 134)) 413s + if(!all(R2 == R2correct)) 413s + stop("Incorrect count-residual map for quadrat.test(2,3)") 413s + 413s + Q5 <- quadratcount(humberside, 5, 3) 413s + T5 <- suppressWarnings(quadrat.test(Q5)) 413s + R5 <- cbind(as.numeric(t(Q5)), round(10 * residuals(T5))) 413s + R5correct <- cbind( 413s + c( 0, 0, 3, 19, 3, 2, 14, 5, 0, 2, 117, 35, 3), 413s + c(-19, -33, -42, 16, -37, -49, -28, -35, -5, -21, 295, 40, -32)) 413s + if(!all(R5 == R5correct)) 413s + stop("Incorrect count-residual map for quadrat.test(5,3)") 413s + 413s + #' cases of studpermu.test 413s + #' X is a hyperframe 413s + b <- studpermu.test(pyramidal, nperm=9) 413s + b <- studpermu.test(pyramidal, nperm=9, use.Tbar=TRUE) 413s + #' X is a list of lists of ppp 413s + ZZ <- split(pyramidal$Neurons, pyramidal$group) 413s + bb <- studpermu.test(ZZ, nperm=9) 413s + 413s + #' Issue #115 413s + X <- runifpoint(50, nsim = 3) 413s + Y <- runifpoint(3000, nsim = 3) 413s + h <- hyperframe(ppp = c(X, Y), group = rep(1:2, 3)) 413s + studpermu.test(h, ppp ~ group) 413s + 413s + #' scan test 413s + Z <- scanmeasure(cells, 0.1, method="fft") 413s + rr <- c(0.05, 1) 413s + scan.test(amacrine, rr, nsim=5, 413s + method="binomial", alternative="less") 413s + }) 413s + } 413s > # 413s > # tests/imageops.R 413s > # 413s > # $Revision: 1.43 $ $Date: 2023/08/29 01:03:59 $ 413s > # 413s > 413s > 413s > if(FULLTEST) { 413s + local({ 413s + #' case of "[.im" and "[<-.im" where index is an ssf 413s + d <- distmap(cells, dimyx=32) 413s + Empty <- cells[FALSE] 413s + EmptyFun <- ssf(Empty, numeric(0)) 413s + ff <- d[EmptyFun] 413s + d[EmptyFun] <- 42 413s + 413s + #' Smooth.im -> blur.im with sigma=NULL 413s + Z <- as.im(function(x,y) { x - y }, letterR, dimyx=32) 413s + ZS <- Smooth(Z) 413s + 413s + #' deprecated -> im.apply(DA, which.max) 413s + Z <- which.max.im(bei.extra) 413s + 413s + #' rotmean 413s + U <- rotmean(Z, origin="midpoint", result="im", padzero=FALSE) 413s + 413s + #' cases of distcdf 413s + distcdf(cells[1:5]) 413s + distcdf(W=cells[1:5], dW=1:5) 413s + distcdf(W=Window(cells), V=cells[1:5]) 413s + distcdf(W=Window(cells), V=cells[1:5], dV=1:5) 413s + }) 413s + } 413s > 413s > 413s BEGIN TEST testsK.R 413s 413s R version 4.4.3 (2025-02-28) -- "Trophy Case" 413s Copyright (C) 2025 The R Foundation for Statistical Computing 413s Platform: x86_64-pc-linux-gnu 413s 413s R is free software and comes with ABSOLUTELY NO WARRANTY. 413s You are welcome to redistribute it under certain conditions. 413s Type 'license()' or 'licence()' for distribution details. 413s 413s R is a collaborative project with many contributors. 413s Type 'contributors()' for more information and 413s 'citation()' on how to cite R or R packages in publications. 413s 413s Type 'demo()' for some demos, 'help()' for on-line help, or 413s 'help.start()' for an HTML browser interface to help. 413s Type 'q()' to quit R. 413s 413s > #' 413s > #' Header for all (concatenated) test files 413s > #' 413s > #' Require spatstat.explore 413s > #' Obtain environment variable controlling tests. 413s > #' 413s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $ 413s > 413s > require(spatstat.explore) 413s Loading required package: spatstat.explore 413s Loading required package: spatstat.data 414s Loading required package: spatstat.univar 415s spatstat.univar 3.1-1 415s Loading required package: spatstat.geom 415s spatstat.geom 3.3-5 415s Loading required package: spatstat.random 415s spatstat.random 3.3-2 415s Loading required package: nlme 415s spatstat.explore 3.3-4 415s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0) 415s > ALWAYS <- TRUE 415s > cat(paste("--------- Executing", 415s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of", 415s + "test code -----------\n")) 415s --------- Executing **RESTRICTED** subset of test code ----------- 415s > #' 415s > #' tests/kernelstuff.R 415s > #' 415s > #' $Revision: 1.2 $ $Date: 2023/11/05 01:49:45 $ 415s > 415s > local({ 415s + if(FULLTEST) { 415s + #' test all cases in kernels.R 415s + kernames <- c("gaussian", "rectangular", "triangular", 415s + "epanechnikov", "biweight", "cosine", "optcosine") 415s + X <- rnorm(20) 415s + U <- runif(20) 415s + for(ker in kernames) { 415s + dX <- dkernel(X, ker) 415s + fX <- pkernel(X, ker) 415s + qU <- qkernel(U, ker) 415s + m0 <- kernel.moment(0, 0, ker) 415s + m1 <- kernel.moment(1, 0, ker) 415s + m2 <- kernel.moment(2, 0, ker) 415s + m3 <- kernel.moment(3, 0, ker) 415s + } 415s + } 415s + }) 415s > 415s > #' 415s > #' tests/Kfuns.R 415s > #' 415s > #' Various K and L functions and pcf 415s > #' 415s > #' $Revision: 1.43 $ $Date: 2022/06/17 01:47:08 $ 415s > #' 415s > #' Assumes 'EveryStart.R' was run 415s > 415s > if(FULLTEST) { 415s + Cells <- cells 415s + Amacrine <- amacrine 415s + Redwood <- redwood 415s + } else { 415s + ## reduce numbers of data + dummy points 415s + spatstat.options(npixel=32, ndummy.min=16) 415s + Cells <- cells[c(FALSE, TRUE)] 415s + Amacrine <- amacrine[c(FALSE, TRUE)] 415s + Redwood <- redwood[c(FALSE, TRUE)] 415s + } 415s > 415s > 415s > myfun <- function(x,y){(x+1) * y } # must be outside 415s > 415s > local({ 415s + if(FULLTEST) { 415s + #' supporting code 415s + rmax.rule("Kscaled", owin(), 42) 415s + implemented.for.K(c("border", "bord.modif", "translate", "good", "best"), 415s + "polygonal", TRUE) 415s + implemented.for.K(c("border", "bord.modif", "translate", "good", "best"), 415s + "mask", TRUE) 415s + implemented.for.K(c("border", "isotropic"), "mask", TRUE) 415s + implemented.for.K(c("border", "isotropic"), "mask", FALSE) 415s + #' shortcuts 415s + D <- density(Cells) 415s + K <- Kborder.engine(Cells, rmax=0.4, weights=D, ratio=TRUE) 415s + K <- Knone.engine(Cells, rmax=0.4, weights=D, ratio=TRUE) 415s + allcor <- c("none", "border", "bord.modif","isotropic", "translate") 415s + K <- Krect.engine(Cells, rmax=0.4, ratio=TRUE, correction=allcor) 415s + K <- Krect.engine(Cells, rmax=0.4, ratio=TRUE, correction=allcor, 415s + weights=D) 415s + K <- Krect.engine(Cells, rmax=0.4, ratio=TRUE, correction=allcor, 415s + use.integers=FALSE) 415s + #' Kest special code blocks 415s + K <- Kest(Cells, var.approx=TRUE, ratio=FALSE) 415s + Z <- distmap(Cells) + 1 415s + Kb <- Kest(Cells, correction=c("border","bord.modif"), 415s + weights=Z, ratio=TRUE) 415s + Kn <- Kest(Cells, correction="none", 415s + weights=Z, ratio=TRUE) 415s + Knb <- Kest(Cells, correction=c("border","bord.modif","none"), 415s + weights=Z, ratio=TRUE) 415s + } 415s + if(ALWAYS) { 415s + bigint <- 50000 # This is only "big" on a 32-bit system where 415s + # sqrt(.Machine$integer.max) = 46340.9 415s + X <- runifpoint(bigint) 415s + Z <- as.im(1/bigint, owin()) 415s + Kb <- Kest(X, correction=c("border","bord.modif"), 415s + rmax=0.02, weights=Z, ratio=TRUE) 415s + } 415s + if(FULLTEST) { 415s + Kn <- Kest(X, correction="none", 415s + rmax=0.02, weights=Z, ratio=TRUE) 415s + Knb <- Kest(X, correction=c("border","bord.modif","none"), 415s + rmax=0.02, weights=Z, ratio=TRUE) 415s + #' pcf.ppp special code blocks 415s + pr <- pcf(Cells, ratio=TRUE, var.approx=TRUE) 415s + pc <- pcf(Cells, domain=square(0.5)) 415s + pcr <- pcf(Cells, domain=square(0.5), ratio=TRUE) 415s + pw <- pcf(Redwood, correction="none") 415s + pwr <- pcf(Redwood, correction="none", ratio=TRUE) 415s + pv <- pcf(Redwood, kernel="rectangular") 415s + p1 <- pcf(Redwood[1]) 415s + #' pcf.fv 415s + K <- Kest(Redwood) 415s + g <- pcf(K, method="a") 415s + g <- pcf(K, method="c") 415s + g <- pcf(K, method="d") 415s + #' Kinhom code blocks 415s + X <- rpoispp(function(x,y) { 100 * x }, 100, square(1)) 415s + lambda <- 100 * X$x 415s + Kin <- Kinhom(X, lambda, correction=c("none", "border")) 415s + lambda2 <- outer(lambda, lambda, "*") 415s + Ki2 <- Kinhom(X, lambda2=lambda2, diagonal=FALSE, 415s + correction=c("translate", "isotropic")) 415s + } 415s + if(ALWAYS) { 415s + #' edge corrections 415s + rr <- rep(0.1, npoints(Cells)) 415s + eC <- edge.Ripley(Cells, rr) 415s + eI <- edge.Ripley(Cells, rr, method="interpreted") 415s + if(max(abs(eC-eI)) > 0.1) 415s + stop("Ripley edge correction results do not match") 415s + } 415s + if(FULLTEST) { 415s + a <- rmax.Ripley(square(1)) 415s + a <- rmax.Rigid(square(1)) 415s + a <- rmax.Ripley(as.polygonal(square(1))) 415s + a <- rmax.Rigid(as.polygonal(square(1))) 415s + a <- rmax.Ripley(letterR) 415s + a <- rmax.Rigid(letterR) 415s + } 415s + if(ALWAYS) { 415s + #' run slow code for edge correction and compare results 415s + op <- spatstat.options(npixel=128) 415s + X <- Redwood[c(TRUE, FALSE, FALSE, FALSE)] 415s + Window(X) <- as.polygonal(Window(X)) 415s + Eapprox <- edge.Trans(X) 415s + Eexact <- edge.Trans(X, exact=TRUE) 415s + maxrelerr <- max(abs(1 - range(Eapprox/Eexact))) 415s + if(maxrelerr > 0.1) 415s + stop(paste("Exact and approximate algorithms for edge.Trans disagree by", 415s + paste0(round(100*maxrelerr), "%")), 415s + call.=FALSE) 415s + spatstat.options(op) 415s + } 415s + }) 415s > 415s > local({ 415s + if(FULLTEST) { 415s + #' ---- multitype ------ 415s + K <- Kcross(Amacrine, correction=c("none", "bord.modif")) 415s + K <- Kcross(Amacrine, correction=c("none", "bord", "bord.modif"), 415s + ratio=TRUE) 415s + #' inhomogeneous multitype 415s + K2 <- Kcross.inhom(Amacrine, lambdaX=densityfun(Amacrine)) 415s + K3 <- Kcross.inhom(Amacrine, lambdaX=density(Amacrine, at="points")) 415s + K5 <- Kcross.inhom(Amacrine, correction="bord.modif") 415s + #' markconnect, markcorr 415s + M <- markconnect(Amacrine, "on", "off", normalise=TRUE) 415s + M <- markcorr(longleaf, normalise=TRUE, 415s + correction=c("isotropic", "translate", "border", "none")) 415s + M <- markcorr(longleaf, normalise=TRUE, fargs=list()) 415s + #' Kmark (=markcorrint) 415s + X <- runifpoint(100) %mark% runif(100) 415s + km <- Kmark(X, f=atan2) 415s + km <- Kmark(X, f1=sin) 415s + km <- Kmark(X, f="myfun") 415s + aa <- Kmark(X, normalise=FALSE, returnL=FALSE) 415s + aa <- Kmark(X, normalise=FALSE, returnL=TRUE) 415s + aa <- Kmark(X, normalise=TRUE, returnL=FALSE) 415s + aa <- Kmark(X, normalise=TRUE, returnL=TRUE) 415s + } 415s + }) 415s > 415s > local({ 415s + if(FULLTEST) { 415s + #' various modified K functions 415s + #' 415s + #' directional K functions 415s + #' 415s + a <- Ksector(swedishpines, 415s + -pi/2, pi/2, units="radians", 415s + correction=c("none", "border", "bord.modif", 415s + "Ripley", "translate"), 415s + ratio=TRUE) 415s + plot(a) 415s + #' 415s + #' local K functions 415s + #' 415s + Z <- as.im(intensity(swedishpines), W=Window(swedishpines)) 415s + ZX <- Z[swedishpines] 415s + a <- localLinhom(swedishpines, lambda=Z) 415s + a <- localLinhom(swedishpines, lambda=ZX) 415s + a <- localLinhom(swedishpines, lambda=Z, correction="none") 415s + a <- localLinhom(swedishpines, lambda=Z, correction="translate") 415s + a <- localLcross(Amacrine) 415s + a <- localLcross(Amacrine, from="off", to="off") 415s + a <- localKdot(Amacrine) 415s + a <- localLdot(Amacrine) 415s + a <- localKcross.inhom(Amacrine) 415s + a <- localLcross.inhom(Amacrine) 415s + Zed <- solapply(intensity(amacrine), as.im, W=Window(amacrine)) 415s + Lum <- evaluateCovariateAtPoints(Zed, Amacrine) 415s + moff <- (marks(Amacrine) == "off") 415s + a <- localLcross.inhom(Amacrine, from="off", to="on", lambdaX=Zed) 415s + a <- localLcross.inhom(Amacrine, from="off", to="on", lambdaX=Lum) 415s + a <- localLcross.inhom(Amacrine, from="off", to="on", 415s + lambdaFrom=Lum[moff], lambdaTo=Lum[!moff]) 415s + a <- localLcross.inhom(Amacrine, from="off", to="on", lambdaX=Zed, 415s + correction="none") 415s + a <- localLcross.inhom(Amacrine, from="off", to="on", lambdaX=Zed, 415s + correction="translate") 415s + #' 415s + #' cases of resolve.lambdacross 415s + #' 415s + h <- resolve.lambdacross(Amacrine, moff, !moff) 415s + h <- resolve.lambdacross(Amacrine, moff, !moff, lambdaX=Zed) 415s + h <- resolve.lambdacross(Amacrine, moff, !moff, lambdaX=Lum) 415s + h <- resolve.lambdacross(Amacrine, moff, !moff, 415s + lambdaI=Zed[["off"]], lambdaJ=Zed[["on"]]) 415s + h <- resolve.lambdacross(Amacrine, moff, !moff, 415s + lambdaI=Lum[moff], lambdaJ=Lum[!moff]) 415s + d <- densityfun(unmark(Amacrine), sigma=0.1) 415s + dm <- lapply(split(Amacrine), densityfun, sigma=0.1) 415s + h <- resolve.lambdacross(Amacrine, moff, !moff, lambdaX=d) 415s + h <- resolve.lambdacross(Amacrine, moff, !moff, 415s + lambdaI=dm[["off"]], lambdaJ=dm[["on"]]) 415s + h <- resolve.lambdacross(Amacrine, moff, !moff, 415s + lambdaX=function(x,y,m){ d(x,y) }) 415s + #' 415s + #' multitype inhomogeneous pcf 415s + #' 415s + g <- pcfcross.inhom(Amacrine, 415s + lambdaI=dm[["off"]], lambdaJ=dm[["on"]]) 415s + 415s + #' 415s + #' lohboot code blocks 415s + #' 415s + Ared <- lohboot(Redwood, fun="Kest", block=TRUE, 415s + Vcorrection=TRUE, global=FALSE, correction="none") 415s + Bred <- lohboot(Redwood, block=TRUE, basicboot=TRUE, global=FALSE) 415s + Cred <- lohboot(Redwood, fun=Kest, block=TRUE, global=TRUE, 415s + correction="translate") 415s + Dred <- lohboot(Redwood, Lest) 415s + Kred <- lohboot(Redwood, Kinhom) 415s + Lred <- lohboot(Redwood, Linhom) 415s + gred <- lohboot(Redwood, pcfinhom, sigma=0.1) 415s + #' 415s + X <- runifpoint(100, letterR) 415s + AX <- lohboot(X, block=TRUE, nx=7, ny=10) 415s + #' multitype 415s + b <- lohboot(Amacrine, Kcross) 415s + b <- lohboot(Amacrine, Lcross) 415s + b <- lohboot(Amacrine, Kdot) 415s + b <- lohboot(Amacrine, Ldot) 415s + b <- lohboot(Amacrine, Kcross.inhom) 415s + b <- lohboot(Amacrine, Lcross.inhom) 415s + 415s + ## Kscaled 415s + A <- Lscaled(japanesepines, renormalise=TRUE, correction="all") 415s + } 415s + }) 415s > 415s > local({ 415s + if(ALWAYS) { 415s + #' From Ege, in response to a stackoverflow question. 415s + #' The following example has two points separated by r = 1 with 1/4 of the 415s + #' circumference outside the 10x10 window (i.e. area 100). 415s + #' Thus the value of K^(r) should jump from 0 to 415s + #' 100/(2\cdot 1)\cdot ((3/4)^{-1} + (3/4)^{-1}) = 100 \cdot 4/3 = 133.333. 415s + x <- c(4.5,5.5) 415s + y <- c(10,10)-sqrt(2)/2 415s + W <- square(10) 415s + X <- ppp(x, y, W) 415s + discrepancy in isotropic edge correction at interior point of rectangle is 2.22e-16, within tolerance of 1e-06 415s discrepancy in isotropic edge correction near corner of rectangle is 8.882e-16, within tolerance of 1e-06 415s compere <- function(a, b, where, tol=1e-6) { 415s + descrip <- paste("discrepancy in isotropic edge correction", where) 415s + err <- as.numeric(a) - as.numeric(b) 415s + maxerr <- max(abs(err)) 415s + blurb <- paste(descrip, "is", paste0(signif(maxerr, 4), ","), 415s + if(maxerr > tol) "exceeding" else "within", 415s + "tolerance of", tol) 415s + message(blurb) 415s + if(maxerr > tol) { 415s + message(paste("Discrepancies:", paste(err, collapse=", "))) 415s + stop(paste("excessive", descrip), call.=FALSE) 415s + } 415s + invisible(TRUE) 415s + } 415s + ## Testing: 415s + eX <- edge.Ripley(X, c(1,1)) 415s + compere(eX, c(4/3,4/3), "at interior point of rectangle") 415s + ## Corner case: 415s + Y <- X 415s + Y$x <- X$x-4.5+sqrt(2)/2 415s + eY <- edge.Ripley(Y, c(1,1)) 415s + compere(eY, c(2,4/3), "near corner of rectangle") 415s + ## Invoke polygonal code 415s + Z <- rotate(Y, pi/4) 415s + eZdebug <- edge.Ripley(Z, c(1,1), internal=list(debug=TRUE)) 415s + compere(eZdebug, c(2,4/3), "at interior point of polygon (debug on)") 415s + ## test validity without debugger,in case of quirks of compiler optimisation 415s + eZ <- edge.Ripley(Z, c(1,1)) 415s + compere(eZ, c(2,4/3), "at interior point of polygon (debug off)") 415s + } 415s + }) 415s /// Debug level 3 /// 415s ------- centre[0] = (-6.071068, 7.071068) ------ 415s boundary distance 0.707107 415s radius[0] = 1.000000 415s ... Edge[0] = (0.000000,0.000000) to (7.071068,7.071068) 415s Left: det = -35.857864 415s Right: det = -171.715729 415s Top: det = -34143.145751 415s Finished cutting; ncut = 0 415s contrib = -0.000000 415s ... Edge[1] = (7.071068,7.071068) to (0.000000,14.142136) 415s Left: det = -171.715729 415s Right: det = -35.857864 415s Top: det = -34143.145751 415s Finished cutting; ncut = 0 415s contrib = 0.000000 415s ... Edge[2] = (0.000000,14.142136) to (-7.071068,7.071068) 415s Left: det = -35.857864 415s Right: det = 0.000000 415s det = 0 415s Top: det = 200.000000 415s det > 0 415s hits + segment: t = 1.000000, theta = 3.141593 415s hits - segment: t = 0.858579, theta = 1.570796 415s Finished cutting; ncut = 2 415s theta[0] = 1.570796 415s theta[1] = 3.141593 415s Interval 0, width 1.570796:inside 415s Interval 1, width 1.570796:outside 415s Interval 2, width 3.141593:inside 415s contrib = 4.712389 415s ... Edge[3] = (-7.071068,7.071068) to (0.000000,0.000000) 415s Left: det = 0.000000 415s det = 0 415s discrepancy in isotropic edge correction at interior point of polygon (debug on) is 7.55e-15, within tolerance of 1e-06 415s discrepancy in isotropic edge correction at interior point of polygon (debug off) is 7.55e-15, within tolerance of 1e-06 415s Right: det = -35.857864 415s Top: det = 200.000000 415s det > 0 415s hits + segment: t = 0.141421, theta = -1.570796 415s hits - segment: t = 0.000000, theta = 3.141593 415s Finished cutting; ncut = 2 415s theta[0] = 3.141593 415s theta[1] = 4.712389 415s Interval 0, width 3.141593:outside 415s Interval 1, width 1.570796:inside 415s Interval 2, width 1.570796:outside 415s contrib = -1.570796 415s 415s Total = 3.141593 = 0.500000 * (2 * pi) 415s ------- centre[1] = (-5.363961, 7.778175) ------ 415s boundary distance 0.707107 415s radius[0] = 1.000000 415s ... Edge[0] = (0.000000,0.000000) to (7.071068,7.071068) 415s Left: det = -27.772078 415s Right: det = -153.629942 415s Top: det = -34143.145751 415s Finished cutting; ncut = 0 415s contrib = -0.000000 415s ... Edge[1] = (7.071068,7.071068) to (0.000000,14.142136) 415s Left: det = -153.629942 415s Right: det = -27.772078 415s Top: det = -27108.831175 415s Finished cutting; ncut = 0 415s contrib = 0.000000 415s ... Edge[2] = (0.000000,14.142136) to (-7.071068,7.071068) 415s Left: det = -27.772078 415s Right: det = -1.914214 415s Top: det = 200.000000 415s det > 0 415s hits + segment: t = 0.900000, theta = 3.141593 415s hits - segment: t = 0.758579, theta = 1.570796 415s Finished cutting; ncut = 2 415s theta[0] = 1.570796 415s theta[1] = 3.141593 415s Interval 0, width 1.570796:inside 415s Interval 1, width 1.570796:outside 415s Interval 2, width 3.141593:inside 415s contrib = 4.712389 415s ... Edge[3] = (-7.071068,7.071068) to (0.000000,0.000000) 415s Left: det = -1.914214 415s Right: det = -27.772078 415s Top: det = -765.685425 415s Finished cutting; ncut = 0 415s contrib = -0.000000 415s 415s Total = 4.712389 = 0.750000 * (2 * pi) 415s > 415s > 415s > 415s > reset.spatstat.options() 415s > 415s BEGIN TEST testsL.R 415s 415s R version 4.4.3 (2025-02-28) -- "Trophy Case" 415s Copyright (C) 2025 The R Foundation for Statistical Computing 415s Platform: x86_64-pc-linux-gnu 415s 415s R is free software and comes with ABSOLUTELY NO WARRANTY. 415s You are welcome to redistribute it under certain conditions. 415s Type 'license()' or 'licence()' for distribution details. 415s 415s R is a collaborative project with many contributors. 415s Type 'contributors()' for more information and 415s 'citation()' on how to cite R or R packages in publications. 415s 415s Type 'demo()' for some demos, 'help()' for on-line help, or 415s 'help.start()' for an HTML browser interface to help. 415s Type 'q()' to quit R. 415s 415s > Loading required package: spatstat.explore 415s #' 415s > #' Header for all (concatenated) test files 415s > #' 415s > #' Require spatstat.explore 415s > #' Obtain environment variable controlling tests. 415s > #' 415s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $ 415s > 415s > require(spatstat.explore) 415s Loading required package: spatstat.data 416s Loading required package: spatstat.univar 416s spatstat.univar 3.1-1 416s Loading required package: spatstat.geom 416s spatstat.geom 3.3-5 416s Loading required package: spatstat.random 416s spatstat.random 3.3-2 416s Loading required package: nlme 416s spatstat.explore 3.3-4 416s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0) 416s > ALWAYS <- TRUE 416s > cat(paste("--------- Executing", 416s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of", 416s + "test code -----------\n")) 416s --------- Executing **RESTRICTED** subset of test code ----------- 416s > ## 416s > ## tests/localpcf.R 416s > ## 416s > ## temporary test file for localpcfmatrix 416s > ## $Revision: 1.2 $ $Date: 2015/12/29 08:54:49 $ 416s > 416s > local({ 416s + a <- localpcfmatrix(redwood) 416s + if(FULLTEST) { 416s + a 416s + plot(a) 416s + a[, 3:5] 416s + } 416s + }) 416s > 416s BEGIN TEST testsM.R 416s 416s R version 4.4.3 (2025-02-28) -- "Trophy Case" 416s Copyright (C) 2025 The R Foundation for Statistical Computing 416s Platform: x86_64-pc-linux-gnu 416s 416s R is free software and comes with ABSOLUTELY NO WARRANTY. 416s You are welcome to redistribute it under certain conditions. 416s Type 'license()' or 'licence()' for distribution details. 416s 416s R is a collaborative project with many contributors. 416s Type 'contributors()' for more information and 416s 'citation()' on how to cite R or R packages in publications. 416s 416s Type 'demo()' for some demos, 'help()' for on-line help, or 416s 'help.start()' for an HTML browser interface to help. 416s Type 'q()' to quit R. 416s 416s > #' 416s > #' Header for all (concatenated) test files 416s > #' 416s > #' Require spatstat.explore 416s > #' Obtain environment variable controlling tests. 416s > #' 416s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $ 416s > 416s > require(spatstat.explore) 416s Loading required package: spatstat.explore 416s Loading required package: spatstat.data 417s Loading required package: spatstat.univar 417s spatstat.univar 3.1-1 417s Loading required package: spatstat.geom 417s spatstat.geom 3.3-5 417s Loading required package: spatstat.random 417s spatstat.random 3.3-2 417s Loading required package: nlme 417s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0) 417s > ALWAYS <- TRUE 417s > cat(paste("--------- Executing", 417s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of", 417s + "test code -----------\n")) 417s --------- Executing **RESTRICTED** subset of test code ----------- 417s > ## 417s > ## tests/markcor.R 417s > ## 417s > ## Tests of mark correlation code (etc) 417s > ## 417s > ## $Revision: 1.7 $ $Date: 2020/11/25 01:23:32 $ 417s > 417s spatstat.explore 3.3-4 417s > local({ 417s + if(ALWAYS) { 417s + ## check.testfun checks equality of functions 417s + ## and is liable to break if the behaviour of all.equal is changed 417s + fe <- function(m1, m2) {m1 == m2} 417s + fm <- function(m1, m2) {m1 * m2} 417s + fs <- function(m1, m2) {sqrt(m1)} 417s + if(check.testfun(fe, X=amacrine)$ftype != "equ") 417s + warning("check.testfun fails to recognise mark equality function") 417s + if(check.testfun(fm, X=longleaf)$ftype != "mul") 417s + warning("check.testfun fails to recognise mark product function") 417s + check.testfun(fs, X=longleaf) 417s + check.testfun("mul") 417s + check.testfun("equ") 417s + } 417s + 417s + if(FULLTEST) { 417s + ## test all is well in Kmark -> Kinhom 417s + MA <- Kmark(amacrine,function(m1,m2){m1==m2}) 417s + set.seed(42) 417s + AR <- rlabel(amacrine) 417s + MR <- Kmark(AR,function(m1,m2){m1==m2}) 417s + if(isTRUE(all.equal(MA,MR))) 417s + stop("Kmark unexpectedly ignores marks") 417s + 417s + ## cover code blocks in markcorr() 417s + X <- runifpoint(100) %mark% runif(100) 417s + Y <- X %mark% data.frame(u=runif(100), v=runif(100)) 417s + ww <- runif(100) 417s + fone <- function(x) { x/2 } 417s + ffff <- function(x,y) { fone(x) * fone(y) } 417s + aa <- markcorr(Y) 417s + bb <- markcorr(Y, ffff, weights=ww, normalise=TRUE) 417s + bb <- markcorr(Y, ffff, weights=ww, normalise=FALSE) 417s + bb <- markcorr(Y, f1=fone, weights=ww, normalise=TRUE) 417s + bb <- markcorr(Y, f1=fone, weights=ww, normalise=FALSE) 417s + 417s + ## markcrosscorr 417s + a <- markcrosscorr(betacells, normalise=FALSE) 417s + if(require(sm)) { 417s + b <- markcrosscorr(betacells, method="sm") 417s + } 417s + 417s + ## Vmark with normalisation 417s + v <- Vmark(spruces, normalise=TRUE) 417s + v <- Vmark(finpines, normalise=TRUE) 417s + } 417s + }) 417s > #' tests/mctests.R 417s > #' Monte Carlo tests 417s > #' (mad.test, dclf.test, envelopeTest, hasenvelope) 417s > #' $Revision: 1.5 $ $Date: 2022/05/23 04:09:49 $ 417s > 417s > local({ 417s + if(FULLTEST) { 417s + envelopeTest(cells, Lest, exponent=1, nsim=9, savepatterns=TRUE) 417s + (a3 <- envelopeTest(cells, Lest, exponent=3, nsim=9, savepatterns=TRUE)) 417s + 417s + envelopeTest(a3, Lest, exponent=3, nsim=9, alternative="less") 417s + 417s + envelopeTest(redwood, Lest, exponent=1, nsim=19, 417s + rinterval=c(0, 0.1), alternative="greater", clamp=TRUE) 417s + envelopeTest(redwood, pcf, exponent=Inf, nsim=19, 417s + rinterval=c(0, 0.1), alternative="greater", clamp=TRUE) 417s + } 417s + }) 417s > 417s > 417s > 417s BEGIN TEST testsNtoO.R 417s Warning messages: 417s 1: In eval(quote({ : 417s check.testfun fails to recognise mark equality function 417s 2: In eval(quote({ : 417s check.testfun fails to recognise mark product function 417s 417s R version 4.4.3 (2025-02-28) -- "Trophy Case" 417s Copyright (C) 2025 The R Foundation for Statistical Computing 417s Platform: x86_64-pc-linux-gnu 417s 417s R is free software and comes with ABSOLUTELY NO WARRANTY. 417s You are welcome to redistribute it under certain conditions. 417s Type 'license()' or 'licence()' for distribution details. 417s 417s R is a collaborative project with many contributors. 417s Type 'contributors()' for more information and 417s 'citation()' on how to cite R or R packages in publications. 417s 417s Type 'demo()' for some demos, 'help()' for on-line help, or 417s 'help.start()' for an HTML browser interface to help. 417s Type 'q()' to quit R. 417s 417s Loading required package: spatstat.explore 417s > #' 417s > #' Header for all (concatenated) test files 417s > #' 417s > #' Require spatstat.explore 417s > #' Obtain environment variable controlling tests. 417s > #' 417s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $ 417s > 417s > require(spatstat.explore) 417s Loading required package: spatstat.data 418s Loading required package: spatstat.univar 418s spatstat.univar 3.1-1 418s Loading required package: spatstat.geom 418s spatstat.geom 3.3-5 418s Loading required package: spatstat.random 418s spatstat.random 3.3-2 418s Loading required package: nlme 418s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0) 418s > ALWAYS <- TRUE 418s > cat(paste("--------- Executing", 418s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of", 418s + "test code -----------\n")) 418s --------- Executing **RESTRICTED** subset of test code ----------- 418s > # 418s > # tests/nnstat.R 418s > # 418s > # Check code that uses nndist/nnwhich 418s > spatstat.explore 3.3-4 418s # 418s > # nnorient() 418s > # stienen() 418s > # 418s > # $Revision: 1.1 $ $Date: 2020/12/04 03:45:44 $ 418s > # 418s > 418s > 418s > local({ 418s + if(FULLTEST) { 418s + #' test nnorient 418s + nnorient(cells, domain=erosion(Window(cells), 0.1)) 418s + #' degenerate case 418s + X <- cells[nndist(cells) > bdist.points(cells)] 418s + f <- nnorient(X) 418s + #' nnclean 418s + A <- nnclean(shapley, k=17, edge.correct=TRUE) 418s + B <- nnclean(runifpoint3(300), 3) 418s + #' stienen set 418s + #' bug when disc radius is zero 418s + Y <- unmark(humberside)[40:100] # contains duplicated points 418s + stienen(Y) 418s + Z <- stienenSet(Y) 418s + #' other cases 418s + U <- stienen(cells[1]) 418s + V <- stienenSet(cells, edge=FALSE) 418s + } 418s + }) 418s > 418s > 418s > 418s > 418s BEGIN TEST testsP1.R 419s 419s R version 4.4.3 (2025-02-28) -- "Trophy Case" 419s Copyright (C) 2025 The R Foundation for Statistical Computing 419s Platform: x86_64-pc-linux-gnu 419s 419s R is free software and comes with ABSOLUTELY NO WARRANTY. 419s You are welcome to redistribute it under certain conditions. 419s Type 'license()' or 'licence()' for distribution details. 419s 419s R is a collaborative project with many contributors. 419s Type 'contributors()' for more information and 419s 'citation()' on how to cite R or R packages in publications. 419s 419s Type 'demo()' for some demos, 'help()' for on-line help, or 419s 'help.start()' for an HTML browser interface to help. 419s Type 'q()' to quit R. 419s 419s > Loading required package: spatstat.explore 419s #' 419s > #' Header for all (concatenated) test files 419s > #' 419s > #' Require spatstat.explore 419s > #' Obtain environment variable controlling tests. 419s > #' 419s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $ 419s > 419s > require(spatstat.explore) 419s Loading required package: spatstat.data 420s Loading required package: spatstat.univar 420s spatstat.univar 3.1-1 420s Loading required package: spatstat.geom 420s spatstat.geom 3.3-5 420s Loading required package: spatstat.random 420s spatstat.random 3.3-2 420s Loading required package: nlme 420s spatstat.explore 3.3-4 420s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0) 420s > ALWAYS <- TRUE 420s > cat(paste("--------- Executing", 420s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of", 420s + "test code -----------\n")) 420s --------- Executing **RESTRICTED** subset of test code ----------- 420s > ## 420s > ## tests/pixelgripes.R 420s > ## Problems related to pixellation of windows 420s > ## 420s > ## $Revision: 1.8 $ $Date: 2022/10/23 06:21:10 $ 420s > 420s > if(FULLTEST) { 420s + local({ 420s + 420s + 420s + }) 420s + } 420s > 420s BEGIN TEST testsP2.R 420s 420s R version 4.4.3 (2025-02-28) -- "Trophy Case" 420s Copyright (C) 2025 The R Foundation for Statistical Computing 420s Platform: x86_64-pc-linux-gnu 420s 420s R is free software and comes with ABSOLUTELY NO WARRANTY. 420s You are welcome to redistribute it under certain conditions. 420s Type 'license()' or 'licence()' for distribution details. 420s 420s R is a collaborative project with many contributors. 420s Type 'contributors()' for more information and 420s 'citation()' on how to cite R or R packages in publications. 420s 420s Type 'demo()' for some demos, 'help()' for on-line help, or 420s 'help.start()' for an HTML browser interface to help. 420s Type 'q()' to quit R. 420s 420s > #' 420s > #' Header for all (concatenated) test files 420s > #' 420s > #' Require spatstat.explore 420s > #' Obtain environment variable controlling tests. 420s > #' 420s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $ 420s > 420s > require(spatstat.explore) 420s Loading required package: spatstat.explore 420s Loading required package: spatstat.data 421s Loading required package: spatstat.univar 421s spatstat.univar 3.1-1 421s Loading required package: spatstat.geom 421s spatstat.geom 3.3-5 421s Loading required package: spatstat.random 421s spatstat.random 3.3-2 421s Loading required package: nlme 421s spatstat.explore 3.3-4 421s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0) 421s > ALWAYS <- TRUE 421s > cat(paste("--------- Executing", 421s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of", 421s + "test code -----------\n")) 421s --------- Executing **RESTRICTED** subset of test code ----------- 421s > 421s BEGIN TEST testsQ.R 421s 421s R version 4.4.3 (2025-02-28) -- "Trophy Case" 421s Copyright (C) 2025 The R Foundation for Statistical Computing 421s Platform: x86_64-pc-linux-gnu 421s 421s R is free software and comes with ABSOLUTELY NO WARRANTY. 421s You are welcome to redistribute it under certain conditions. 421s Type 'license()' or 'licence()' for distribution details. 421s 421s R is a collaborative project with many contributors. 421s Type 'contributors()' for more information and 421s 'citation()' on how to cite R or R packages in publications. 421s 421s Type 'demo()' for some demos, 'help()' for on-line help, or 421s 'help.start()' for an HTML browser interface to help. 421s Type 'q()' to quit R. 421s 421s > #' 421s > #' Header for all (concatenated) test files 421s > #' 421s > #' Require spatstat.explore 421s Loading required package: spatstat.explore 421s > #' Obtain environment variable controlling tests. 421s > #' 421s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $ 421s > 421s > require(spatstat.explore) 421s Loading required package: spatstat.data 422s Loading required package: spatstat.univar 422s spatstat.univar 3.1-1 422s Loading required package: spatstat.geom 422s spatstat.geom 3.3-5 422s Loading required package: spatstat.random 422s spatstat.random 3.3-2 422s Loading required package: nlme 422s spatstat.explore 3.3-4 422s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0) 422s > ALWAYS <- TRUE 422s > cat(paste("--------- Executing", 422s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of", 422s + "test code -----------\n")) 422s --------- Executing **RESTRICTED** subset of test code ----------- 422s > 422s BEGIN TEST testsR1.R 422s 422s R version 4.4.3 (2025-02-28) -- "Trophy Case" 422s Copyright (C) 2025 The R Foundation for Statistical Computing 422s Platform: x86_64-pc-linux-gnu 422s 422s R is free software and comes with ABSOLUTELY NO WARRANTY. 422s You are welcome to redistribute it under certain conditions. 422s Type 'license()' or 'licence()' for distribution details. 422s 422s R is a collaborative project with many contributors. 422s Type 'contributors()' for more information and 422s 'citation()' on how to cite R or R packages in publications. 422s 422s Type 'demo()' for some demos, 'help()' for on-line help, or 422s 'help.start()' for an HTML browser interface to help. 422s Type 'q()' to quit R. 422s 422s > #' 422s > #' Header for all (concatenated) test files 422s > #' 422s > #' Require spatstat.explore 422s > #' Obtain environment variable controlling tests. 422s > #' 422s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $ 422s > 422s > require(spatstat.explore) 422s Loading required package: spatstat.explore 422s Loading required package: spatstat.data 423s Loading required package: spatstat.univar 423s spatstat.univar 3.1-1 423s Loading required package: spatstat.geom 424s spatstat.geom 3.3-5 424s Loading required package: spatstat.random 424s spatstat.random 3.3-2 424s Loading required package: nlme 424s spatstat.explore 3.3-4 424s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0) 424s > ALWAYS <- TRUE 424s > cat(paste("--------- Executing", 424s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of", 424s + "test code -----------\n")) 424s --------- Executing **RESTRICTED** subset of test code ----------- 424s > ## 424s > ## tests/rhohat.R 424s > ## 424s > ## Test all combinations of options for rhohatCalc 424s > ## 424s > ## $Revision: 1.6 $ $Date: 2022/05/22 08:03:48 $ 424s > 424s > local({ 424s + if(FULLTEST) { 424s + X <- rpoispp(function(x,y){exp(3+3*x)}) 424s + Z <- as.im(function(x,y) { x }, Window(X)) 424s + f <- funxy(function(x,y) { y + 1 }, Window(X)) 424s + 424s + ## rhohat.ppp 424s + ## done in example(rhohat): 424s + ## rhoA <- rhohat(X, "x") 424s + ## rhoB <- rhohat(X, "x", method="reweight") 424s + ## rhoC <- rhohat(X, "x", method="transform") 424s + ## alternative smoother (if package locfit available) 424s + rhoA <- rhohat(X, "x", smoother="local") 424s + rhoB <- rhohat(X, "x", smoother="local", method="reweight") 424s + rhoC <- rhohat(X, "x", smoother="local", method="transform") 424s + 424s + #' code blocks 424s + rhoD <- rhohat(X, "y", positiveCI=TRUE) 424s + rhoE <- rhohat(X, Z, positiveCI=TRUE) 424s + #' weights 424s + rhoF <- rhohat(X, Z, weights=f(X)) 424s + rhoG <- rhohat(X, Z, weights=f) 424s + rhoH <- rhohat(X, Z, weights=as.im(f)) 424s + 424s + lam <- as.im(function(x,y) {exp(3+2*x)}, W=Window(Z)) 424s + 424s + ## Baseline 424s + rhoAb <- rhohat(X, "x", baseline=lam) 424s + rhoBb <- rhohat(X, "x", method="reweight", baseline=lam) 424s + rhoCb <- rhohat(X, "x", method="transform", baseline=lam) 424s + 424s + ## Horvitz-Thompson 424s + rhoAH <- rhohat(X, "x", horvitz=TRUE) 424s + rhoBH <- rhohat(X, "x", method="reweight", horvitz=TRUE) 424s + rhoCH <- rhohat(X, "x", method="transform", horvitz=TRUE) 424s + 424s + ## class support 424s + plot(rhoA) 424s + plot(rhoA, rho ~ x, shade=NULL) 424s + plot(rhoA, log(rho) ~ x, shade=NULL) 424s + plot(rhoA, log(.) ~ x) 424s + 424s + ## rho2hat 424s + r2xy <- rho2hat(X, "x", "y") 424s + r2xyw <- rho2hat(X, "x", "y", method="reweight") 424s + print(r2xyw) 424s + plot(r2xy, do.points=TRUE) 424s + xcoord <- function(x,y) x 424s + ycoord <- function(x,y) y 424s + xim <- as.im(xcoord, W=Window(X)) 424s + r2fi <- rho2hat(X, ycoord, xim) 424s + r2if <- rho2hat(X, xim, ycoord) 424s + } 424s + }) 424s > 424s BEGIN TEST testsR2.R 424s 424s R version 4.4.3 (2025-02-28) -- "Trophy Case" 424s Copyright (C) 2025 The R Foundation for Statistical Computing 424s Platform: x86_64-pc-linux-gnu 424s 424s R is free software and comes with ABSOLUTELY NO WARRANTY. 424s You are welcome to redistribute it under certain conditions. 424s Type 'license()' or 'licence()' for distribution details. 424s 424s R is a collaborative project with many contributors. 424s Type 'contributors()' for more information and 424s 'citation()' on how to cite R or R packages in publications. 424s 424s Type 'demo()' for some demos, 'help()' for on-line help, or 424s 'help.start()' for an HTML browser interface to help. 424s Type 'q()' to quit R. 424s 424s > #' 424s > #' Header for all (concatenated) test files 424s > #' 424s > #' Require spatstat.explore 424s > #' Obtain environment variable controlling tests. 424s > #' 424s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $ 424s > 424s > require(spatstat.explore) 424s Loading required package: spatstat.explore 424s Loading required package: spatstat.data 425s Loading required package: spatstat.univar 425s spatstat.univar 3.1-1 425s Loading required package: spatstat.geom 425s spatstat.geom 3.3-5 425s Loading required package: spatstat.random 425s spatstat.random 3.3-2 425s Loading required package: nlme 425s spatstat.explore 3.3-4 425s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0) 425s > ALWAYS <- TRUE 425s > cat(paste("--------- Executing", 425s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of", 425s + "test code -----------\n")) 425s --------- Executing **RESTRICTED** subset of test code ----------- 425s > 425s BEGIN TEST testsS.R 425s 425s R version 4.4.3 (2025-02-28) -- "Trophy Case" 425s Copyright (C) 2025 The R Foundation for Statistical Computing 425s Platform: x86_64-pc-linux-gnu 425s 425s R is free software and comes with ABSOLUTELY NO WARRANTY. 425s You are welcome to redistribute it under certain conditions. 425s Type 'license()' or 'licence()' for distribution details. 425s 425s R is a collaborative project with many contributors. 425s Type 'contributors()' for more information and 425s 'citation()' on how to cite R or R packages in publications. 425s 425s Type 'demo()' for some demos, 'help()' for on-line help, or 425s 'help.start()' for an HTML browser interface to help. 425s Type 'q()' to quit R. 425s 425s > #' 425s > #' Header for all (concatenated) test files 425s > #' 425s > #' Require spatstat.explore 425s > #' Obtain environment variable controlling tests. 425s > #' 425s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $ 425s > 425s > require(spatstat.explore) 425s Loading required package: spatstat.explore 425s Loading required package: spatstat.data 426s Loading required package: spatstat.univar 426s spatstat.univar 3.1-1 426s Loading required package: spatstat.geom 426s spatstat.geom 3.3-5 426s Loading required package: spatstat.random 426s spatstat.random 3.3-2 426s Loading required package: nlme 426s spatstat.explore 3.3-4 426s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0) 426s > ALWAYS <- TRUE 426s > cat(paste("--------- Executing", 426s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of", 426s + "test code -----------\n")) 426s --------- Executing **RESTRICTED** subset of test code ----------- 426s > #' tests/sdr.R 426s > #' 426s > #' $Revision: 1.2 $ $Date: 2020/05/01 09:59:59 $ 426s > 426s > if(FULLTEST) { 426s + local({ 426s + AN <- sdr(bei, bei.extra, method="NNIR") 426s + AV <- sdr(bei, bei.extra, method="SAVE") 426s + AI <- sdr(bei, bei.extra, method="SIR") 426s + AT <- sdr(bei, bei.extra, method="TSE") 426s + subspaceDistance(AN$B, AV$B) 426s + dimhat(AN$M) 426s + }) 426s + } 426s > ## 426s > ## tests/segments.R 426s > ## Tests of psp class and related code 426s > ## [SEE ALSO: tests/xysegment.R] 426s > ## 426s > ## $Revision: 1.33 $ $Date: 2022/05/22 08:39:47 $ 426s > 426s > 426s > local({ 426s + if(ALWAYS) { # C code 426s + #' tests of density.psp 426s + Y <- edges(letterR) 426s + Window(Y) <- grow.rectangle(Frame(Y), 0.4) 426s + YC <- density(Y, 0.2, method="C", edge=FALSE, dimyx=64) 426s + YI <- density(Y, 0.2, method="interpreted", edge=FALSE, dimyx=64) 426s + YF <- density(Y, 0.2, method="FFT", edge=FALSE, dimyx=64) 426s + xCI <- max(abs(YC/YI - 1)) 426s + xFI <- max(abs(YF/YI - 1)) 426s + cat(paste("xCI =", xCI, "\txFI =", signif(xFI, 5)), fill=TRUE) 426s + if(xCI > 0.01) stop(paste("density.psp C algorithm relative error =", xCI)) 426s + if(xFI > 0.1) stop(paste("density.psp FFT algorithm relative error =", xFI)) 426s + 426s + B <- square(0.3) 426s + density(Y, 0.2, at=B) 426s + density(Y, 0.2, at=B, edge=TRUE, method="C") 426s + Z <- runifrect(3, B) 426s + density(Y, 0.2, at=Z) 426s + density(Y, 0.2, at=Z, edge=TRUE, method="C") 426s + } 426s + 426s + if(FULLTEST) { 426s + #' segment clipping in window (bug found by Rolf) 426s + set.seed(42) 426s + X <- runifpoint(50, letterR) 426s + SP <- dirichletEdges(X) #' clip to polygonal window 426s + Window(X) <- as.mask(Window(X)) 426s + SM <- dirichletEdges(X) #' clip to mask window 426s + } 426s + 426s + if(FULLTEST) { 426s + #' test rshift.psp and append.psp with marks (Ute Hahn) 426s + m <- data.frame(A=1:10, B=letters[1:10]) 426s + g <- gl(3, 3, length=10) 426s + X <- psp(runif(10), runif(10), runif(10), runif(10), window=owin(), marks=m) 426s + Y <- rshift(X, radius = 0.1) 426s + Y <- rshift(X, radius = 0.1, group=g) 426s + #' mark management 426s + b <- data.frame(A=1:10) 426s + X <- psp(runif(10), runif(10), runif(10), runif(10), window=owin(), marks=b) 426s + stopifnot(is.data.frame(marks(X))) 426s + Y <- rshift(X, radius = 0.1) 426s + Y <- rshift(X, radius = 0.1, group=g) 426s + } 426s + 426s + }) 426s xCI = 0 xFI = 0.073128 428s > 428s > 428s > 428s > # 428s Warning message: 428s the images ‘dens’ and ‘edg’ were not compatible 428s > ## tests/sigtraceprogress.R 428s > # 428s > ## Tests of *.sigtrace and *.progress 428s > # 428s > ## $Revision: 1.5 $ $Date: 2020/05/01 09:59:59 $ 428s > 428s > if(FULLTEST) { 428s + local({ 428s + plot(dclf.sigtrace(redwood, nsim=19, alternative="greater", rmin=0.02, 428s + verbose=FALSE)) 428s + plot(dclf.progress(redwood, nsim=19, alternative="greater", rmin=0.02, 428s + verbose=FALSE)) 428s + plot(dg.sigtrace(redwood, nsim=5, alternative="greater", rmin=0.02, 428s + verbose=FALSE)) 428s + plot(dg.progress(redwood, nsim=5, alternative="greater", rmin=0.02, 428s + verbose=FALSE)) 428s + ## test 'leave-two-out' algorithm 428s + a <- dclf.sigtrace(redwood, Lest, nsim=9, use.theory=FALSE, leaveout=2, 428s + verbose=FALSE) 428s + aa <- dclf.progress(redwood, Lest, nsim=9, use.theory=FALSE, leaveout=2, 428s + verbose=FALSE) 428s + b <- dg.sigtrace(redwood, Lest, nsim=5, use.theory=FALSE, leaveout=2) 428s + bb <- dg.progress(redwood, Lest, nsim=5, use.theory=FALSE, leaveout=2, 428s + verbose=FALSE) 428s + ## other code blocks 428s + e <- mad.progress(redwood, nsim=5) 428s + e <- mad.progress(redwood, nsim=19, alpha=0.05) 428s + f <- dclf.progress(redwood, nsim=5, scale=function(x) x^2) 428s + f <- dclf.progress(redwood, nsim=5, normalize=TRUE, deflate=TRUE) 428s + g <- dg.progress(redwood, nsim=5, scale=function(x) x^2) 428s + g <- dg.progress(redwood, nsim=5, normalize=TRUE, deflate=TRUE) 428s + }) 428s + } 428s > #' 428s > #' tests/ssf.R 428s > #' 428s > #' Tests of 'ssf' class 428s > #' 428s > #' $Revision: 1.5 $ $Date: 2020/12/04 08:02:25 $ 428s > #' 428s > 428s > if(FULLTEST) { 428s + local({ 428s + Y <- cells[1:5] 428s + X <- rsyst(Window(Y), 5) 428s + Z <- runifpoint(3, Window(Y)) 428s + f1 <- ssf(X, nncross(X,Y,what="dist")) 428s + f2 <- ssf(X, nncross(X,Y,what="dist", k=1:2)) 428s + image(f1) 428s + g1 <- as.function(f1) 428s + g1(Z) 428s + g2 <- as.function(f2) 428s + g2(Z) 428s + plot(f1, style="contour") 428s + plot(f1, style="imagecontour") 428s + contour(f1) 428s + apply.ssf(f2, 1, sum) 428s + range(f1) 428s + min(f1) 428s + max(f1) 428s + integral(f1, weights=tile.areas(dirichlet(X))) 428s + }) 428s + } 428s > #' 428s > #' tests/sumfun.R 428s > #' 428s > #' Tests of code for summary functions 428s > #' 428s > #' $Revision: 1.9 $ $Date: 2022/05/22 08:45:23 $ 428s > 428s > if(ALWAYS) { # involves C code 428s + local({ 428s + W <- owin(c(0,1), c(-1/2, 0)) 428s + Gr <- Gest(redwood, correction="all",domain=W) 428s + Fr <- Fest(redwood, correction="all",domain=W) 428s + Jr <- Jest(redwood, correction="all",domain=W) 428s + 428s + F0 <- Fest(redwood[FALSE], correction="all") 428s + Fh <- Fest(humberside, domain=erosion(Window(humberside), 100)) 428s + 428s + FIr <- Finhom(redwood, savelambda=TRUE, ratio=TRUE) 428s + JIr <- Jinhom(redwood, savelambda=TRUE, ratio=TRUE) 428s + 428s + Ga <- Gcross(amacrine, correction="all") 428s + Ia <- Iest(amacrine, correction="all") 428s + lam <- intensity(amacrine) 428s + lmin <- 0.9 * min(lam) 428s + nJ <- sum(marks(amacrine) == "off") 428s + FM <- FmultiInhom(amacrine, marks(amacrine) == "off", 428s + lambdaJ=rep(lam["off"], nJ), 428s + lambdamin = lmin) 428s + GM <- GmultiInhom(amacrine, marks(amacrine) == "on", 428s + marks(amacrine) == "off", 428s + lambda=lam[marks(amacrine)], 428s + lambdamin=lmin, 428s + ReferenceMeasureMarkSetI=42) 428s + 428s + a <- compileCDF(D=nndist(redwood), 428s + B=bdist.points(redwood), 428s + r=seq(0, 1, length=256)) 428s + 428s + #' Tstat (triplet) function, all code blocks 428s + a <- Tstat(redwood, ratio=TRUE, 428s + correction=c("none", "border", "bord.modif", "translate")) 428s + 428s + ## distance argument spacing and breakpoints 428s + e <- check.finespacing(c(0,1,2), eps=0.1, action="silent") 428s + b <- as.breakpts(pi, 20) 428s + b <- as.breakpts(42, max=pi, npos=20) 428s + b <- even.breaks.owin(letterR) 428s + }) 428s + } 430s Searching 59340 potential triangles; estimated time 0.000426 sec 430s > 430s BEGIN TEST testsT.R 430s 430s R version 4.4.3 (2025-02-28) -- "Trophy Case" 430s Copyright (C) 2025 The R Foundation for Statistical Computing 430s Platform: x86_64-pc-linux-gnu 430s 430s R is free software and comes with ABSOLUTELY NO WARRANTY. 430s You are welcome to redistribute it under certain conditions. 430s Type 'license()' or 'licence()' for distribution details. 430s 430s R is a collaborative project with many contributors. 430s Type 'contributors()' for more information and 430s 'citation()' on how to cite R or R packages in publications. 430s 430s Type 'demo()' for some demos, 'help()' for on-line help, or 430s 'help.start()' for an HTML browser interface to help. 430s Type 'q()' to quit R. 430s 430s > #' 430s > #' Header for all (concatenated) test files 430s > #' 430s > #' Require spatstat.explore 430s > #' Obtain environment variable controlling tests. 430s > #' 430s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $ 430s > 430s > require(spatstat.explore) 430s Loading required package: spatstat.explore 430s Loading required package: spatstat.data 431s Loading required package: spatstat.univar 431s spatstat.univar 3.1-1 431s Loading required package: spatstat.geom 431s spatstat.geom 3.3-5 431s Loading required package: spatstat.random 431s spatstat.random 3.3-2 431s Loading required package: nlme 432s spatstat.explore 3.3-4 432s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0) 432s > ALWAYS <- TRUE 432s > cat(paste("--------- Executing", 432s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of", 432s + "test code -----------\n")) 432s --------- Executing **RESTRICTED** subset of test code ----------- 432s > #' 432s > #' tests/threedee.R 432s > #' 432s > #' Tests of 3D code 432s > #' 432s > #' $Revision: 1.8 $ $Date: 2020/05/02 01:32:58 $ 432s > #' 432s > 432s > local({ 432s + X <- runifpoint3(30) 432s + Y <- runifpoint3(20) 432s + if(FULLTEST) { 432s + A <- runifpoint3(10, nsim=2) 432s + Z <- ppsubset(X, 2:4) 432s + } 432s + ## 432s + if(ALWAYS) { # includes C code 432s + d <- pairdist(X, periodic=TRUE, squared=TRUE) 432s + d <- crossdist(X, Y, squared=TRUE) 432s + d <- crossdist(X, Y, squared=TRUE, periodic=TRUE) 432s + #' 432s + h <- has.close(X, 0.2) 432s + h <- has.close(X, 0.2, periodic=TRUE) 432s + h <- has.close(X, 0.2, Y=Y) 432s + h <- has.close(X, 0.2, Y=Y, periodic=TRUE) 432s + #' code blocks not otherwise reached 432s + rmax <- 0.6 * max(nndist(X)) 432s + g <- G3est(X, rmax=rmax, correction="rs") 432s + g <- G3est(X, rmax=rmax, correction="km") 432s + g <- G3est(X, rmax=rmax, correction="Hanisch") 432s + g <- G3est(X, rmax=rmax, sphere="ideal") 432s + g <- G3est(X, rmax=rmax, sphere="digital") 432s + v <- sphere.volume() 432s + v <- digital.volume() 432s + #' older code 432s + co <- coords(X) 432s + xx <- co$x 432s + yy <- co$y 432s + zz <- co$z 432s + gg1 <- g3engine(xx, yy, zz, correction="Hanisch G3") 432s + gg2 <- g3engine(xx, yy, zz, correction="minus sampling") 432s + ff1 <- f3engine(xx, yy, zz, correction="no") 432s + ff2 <- f3engine(xx, yy, zz, correction="minus sampling") 432s + } 432s + ## 432s + if(ALWAYS) { 432s + #'class support 432s + X <- runifpoint3(10) 432s + print(X) 432s + print(X %mark% runif(10)) 432s + print(X %mark% factor(letters[c(1:5,5:1)])) 432s + print(X %mark% data.frame(a=1:10, b=runif(10))) 432s + da <- as.Date(paste0("2020-01-0", c(1:5,5:1))) 432s + print(X %mark% da) 432s + print(X %mark% data.frame(a=1:10, b=da)) 432s + } 432s + }) 432s Three-dimensional point pattern: 10 points 432s Box: [0, 1] x [0, 1] x [0, 1] units 432s Marked three-dimensional point pattern: 10 points 432s marks are numeric, of storage type ‘double’ 432s Box: [0, 1] x [0, 1] x [0, 1] units 432s Marked three-dimensional point pattern: 10 points 432s Multitype, with levels = a, b, c, d, e 432s Box: [0, 1] x [0, 1] x [0, 1] units 432s Marked three-dimensional point pattern: 10 points 432s Mark variables: a, b 432s Box: [0, 1] x [0, 1] x [0, 1] units 432s Marked three-dimensional point pattern: 10 points 432s marks are dates, of class ‘Date’ 432s Box: [0, 1] x [0, 1] x [0, 1] units 432s Marked three-dimensional point pattern: 10 points 432s Mark variables: a, b 432s Box: [0, 1] x [0, 1] x [0, 1] units 432s > 432s Warning messages: 432s 1: In G3est: unrecognised argument ‘sphere’ was ignored 432s 2: In G3est: unrecognised argument ‘sphere’ was ignored 432s BEGIN TEST testsUtoZ.R 432s 432s R version 4.4.3 (2025-02-28) -- "Trophy Case" 432s Copyright (C) 2025 The R Foundation for Statistical Computing 432s Platform: x86_64-pc-linux-gnu 432s 432s R is free software and comes with ABSOLUTELY NO WARRANTY. 432s You are welcome to redistribute it under certain conditions. 432s Type 'license()' or 'licence()' for distribution details. 432s 432s R is a collaborative project with many contributors. 432s Type 'contributors()' for more information and 432s 'citation()' on how to cite R or R packages in publications. 432s 432s Type 'demo()' for some demos, 'help()' for on-line help, or 432s 'help.start()' for an HTML browser interface to help. 432s Type 'q()' to quit R. 432s 432s > #' 432s > #' Header for all (concatenated) test files 432s > #' 432s > #' Require spatstat.explore 432s > #' Obtain environment variable controlling tests. 432s > #' 432s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $ 432s > 432s > require(spatstat.explore) 432s Loading required package: spatstat.explore 432s Loading required package: spatstat.data 433s Loading required package: spatstat.univar 433s spatstat.univar 3.1-1 433s Loading required package: spatstat.geom 433s spatstat.geom 3.3-5 433s Loading required package: spatstat.random 433s spatstat.random 3.3-2 433s Loading required package: nlme 433s spatstat.explore 3.3-4 433s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0) 433s > ALWAYS <- TRUE 433s > cat(paste("--------- Executing", 433s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of", 433s + "test code -----------\n")) 433s --------- Executing **RESTRICTED** subset of test code ----------- 433s > 433s autopkgtest [22:39:38]: test run-unit-test: -----------------------] 434s autopkgtest [22:39:39]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 434s run-unit-test PASS 434s autopkgtest [22:39:39]: test pkg-r-autopkgtest: preparing testbed 506s autopkgtest [22:40:51]: testbed dpkg architecture: amd64 506s autopkgtest [22:40:51]: testbed apt version: 2.9.31ubuntu1 506s autopkgtest [22:40:51]: @@@@@@@@@@@@@@@@@@@@ test bed setup 506s autopkgtest [22:40:51]: testbed release detected to be: plucky 507s autopkgtest [22:40:52]: updating testbed package index (apt update) 508s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 508s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 508s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 508s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 508s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 508s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 508s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 508s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 508s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 508s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 508s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 508s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 508s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 508s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 508s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 508s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 508s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 509s Fetched 1265 kB in 1s (1344 kB/s) 510s Reading package lists... 510s + lsb_release --codename --short 510s + RELEASE=plucky 510s + cat 510s + [ plucky != trusty ] 511s + DEBIAN_FRONTEND=noninteractive eatmydata apt-getReading package lists... 511s -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 511s Building dependency tree... 511s Reading state information... 511s Calculating upgrade... 511s Calculating upgrade... 512s The following package was automatically installed and is no longer required: 512s libnl-genl-3-200 512s Use 'sudo apt autoremove' to remove it. 512s The following NEW packages will be installed: 512s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 512s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 512s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 512s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 512s The following packages will be upgraded: 512s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 512s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base 512s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools 512s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0 512s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 512s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0 512s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1 512s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64 512s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6 512s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200 512s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib 512s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2 512s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 512s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 512s linux-firmware linux-generic linux-headers-generic linux-headers-virtual 512s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 512s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 512s parted pci.ids pciutils pinentry-curses python-apt-common python3 512s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi 512s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal 512s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13 512s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd 512s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd 512s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail 512s xz-utils 512s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 512s Need to get 829 MB of archives. 512s After this operation, 325 MB of additional disk space will be used. 512s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 512s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 512s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 512s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 513s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 513s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 513s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 513s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 513s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 513s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 513s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 513s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 513s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 513s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 513s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 513s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 513s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 513s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 513s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 513s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 513s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 513s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 513s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 513s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 513s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 513s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 513s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 513s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 513s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 513s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 513s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 513s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 513s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 514s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 514s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 514s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 514s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 514s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 514s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 514s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 514s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 514s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 514s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 514s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 514s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 514s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 514s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 514s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 514s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 514s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 514s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 514s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 514s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 514s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 514s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 514s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 514s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 514s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 514s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 514s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 514s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 514s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 514s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 514s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 514s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 514s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 514s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 514s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 514s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 514s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 514s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 514s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 514s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 514s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 514s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 514s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 514s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 514s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 514s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 514s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 514s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 514s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 514s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 514s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 514s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 514s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 514s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 514s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 514s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 514s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 514s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 514s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 514s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 514s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 514s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 514s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 514s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 514s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 514s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 515s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 515s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 515s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 515s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 515s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 515s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 518s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 518s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 518s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 518s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 534s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 534s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 534s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 534s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 534s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 534s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 534s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 534s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 535s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 535s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 538s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 538s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 538s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 538s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 538s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 538s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 539s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 539s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 539s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 539s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 539s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 539s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 539s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 539s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 539s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 539s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 539s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 539s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 539s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 539s Preconfiguring packages ... 540s Fetched 829 MB in 27s (30.6 MB/s) 540s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109140 files and directories currently installed.) 540s Preparing to unpack .../ncurses-bin_6.5+20250216-2_amd64.deb ... 540s Unpacking ncurses-bin (6.5+20250216-2) over (6.5+20250216-1) ... 540s Setting up ncurses-bin (6.5+20250216-2) ... 540s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109140 files and directories currently installed.) 540s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu1_amd64.deb ... 540s Unpacking libc-dev-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 540s Preparing to unpack .../libc6-dev_2.41-1ubuntu1_amd64.deb ... 540s Unpacking libc6-dev:amd64 (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 540s Preparing to unpack .../locales_2.41-1ubuntu1_all.deb ... 540s Unpacking locales (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 541s Preparing to unpack .../libc6_2.41-1ubuntu1_amd64.deb ... 541s Checking for services that may need to be restarted... 541s Checking init scripts... 541s Checking for services that may need to be restarted... 541s Checking init scripts... 541s Stopping some services possibly affected by the upgrade (will be restarted later): 541s cron: stopping...done. 541s 541s Unpacking libc6:amd64 (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 541s Setting up libc6:amd64 (2.41-1ubuntu1) ... 541s Checking for services that may need to be restarted... 541s Checking init scripts... 541s Restarting services possibly affected by the upgrade: 541s cron: restarting...done. 541s 541s Services restarted successfully. 541s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109141 files and directories currently installed.) 541s Preparing to unpack .../libc-bin_2.41-1ubuntu1_amd64.deb ... 541s Unpacking libc-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 541s Setting up libc-bin (2.41-1ubuntu1) ... 542s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109141 files and directories currently installed.) 542s Preparing to unpack .../linux-libc-dev_6.14.0-10.10_amd64.deb ... 542s Unpacking linux-libc-dev:amd64 (6.14.0-10.10) over (6.12.0-16.16) ... 542s Preparing to unpack .../libatomic1_15-20250222-0ubuntu1_amd64.deb ... 542s Unpacking libatomic1:amd64 (15-20250222-0ubuntu1) over (15-20250213-1ubuntu1) ... 542s Preparing to unpack .../gcc-15-base_15-20250222-0ubuntu1_amd64.deb ... 542s Unpacking gcc-15-base:amd64 (15-20250222-0ubuntu1) over (15-20250213-1ubuntu1) ... 542s Setting up gcc-15-base:amd64 (15-20250222-0ubuntu1) ... 542s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 542s Preparing to unpack .../libgcc-s1_15-20250222-0ubuntu1_amd64.deb ... 542s Unpacking libgcc-s1:amd64 (15-20250222-0ubuntu1) over (15-20250213-1ubuntu1) ... 542s Setting up libgcc-s1:amd64 (15-20250222-0ubuntu1) ... 542s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 542s Preparing to unpack .../libstdc++6_15-20250222-0ubuntu1_amd64.deb ... 542s Unpacking libstdc++6:amd64 (15-20250222-0ubuntu1) over (15-20250213-1ubuntu1) ... 542s Setting up libstdc++6:amd64 (15-20250222-0ubuntu1) ... 543s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 543s Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ... 543s Unpacking ncurses-base (6.5+20250216-2) over (6.5+20250216-1) ... 543s Setting up ncurses-base (6.5+20250216-2) ... 543s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 543s Preparing to unpack .../ncurses-term_6.5+20250216-2_all.deb ... 543s Unpacking ncurses-term (6.5+20250216-2) over (6.5+20250216-1) ... 543s Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ... 543s Unpacking liblz4-1:amd64 (1.10.0-4) over (1.10.0-3) ... 543s Setting up liblz4-1:amd64 (1.10.0-4) ... 543s (Reading database ... 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.../23-parted_3.6-5_amd64.deb ... 551s Unpacking parted (3.6-5) over (3.6-4build1) ... 551s Preparing to unpack .../24-libparted2t64_3.6-5_amd64.deb ... 551s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 551s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 551s Unpacking libparted2t64:amd64 (3.6-5) over (3.6-4build1) ... 551s Preparing to unpack .../25-pci.ids_0.0~2025.03.09-1_all.deb ... 551s Unpacking pci.ids (0.0~2025.03.09-1) over (0.0~2025.02.12-1) ... 552s Preparing to unpack .../26-pciutils_1%3a3.13.0-2_amd64.deb ... 552s Unpacking pciutils (1:3.13.0-2) over (1:3.13.0-1) ... 552s Preparing to unpack .../27-libpci3_1%3a3.13.0-2_amd64.deb ... 552s Unpacking libpci3:amd64 (1:3.13.0-2) over (1:3.13.0-1) ... 552s Preparing to unpack .../28-strace_6.13+ds-1ubuntu1_amd64.deb ... 552s Unpacking strace 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(2.44-3ubuntu1) over (2.44-2ubuntu1) ... 552s Preparing to unpack .../36-binutils_2.44-3ubuntu1_amd64.deb ... 552s Unpacking binutils (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 552s Preparing to unpack .../37-binutils-common_2.44-3ubuntu1_amd64.deb ... 552s Unpacking binutils-common:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 552s Preparing to unpack .../38-libsframe1_2.44-3ubuntu1_amd64.deb ... 552s Unpacking libsframe1:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 552s Preparing to unpack .../39-hwdata_0.393-3_all.deb ... 552s Unpacking hwdata (0.393-3) over (0.392-1) ... 552s Selecting previously unselected package pnp.ids. 552s Preparing to unpack .../40-pnp.ids_0.393-3_all.deb ... 552s Unpacking pnp.ids (0.393-3) ... 552s Preparing to unpack .../41-linux-tools-common_6.14.0-10.10_all.deb ... 552s Unpacking linux-tools-common (6.14.0-10.10) over (6.12.0-16.16) ... 552s Selecting previously unselected package bpftool. 552s Preparing to unpack .../42-bpftool_7.6.0+6.14.0-10.10_amd64.deb ... 552s Unpacking bpftool (7.6.0+6.14.0-10.10) ... 552s Preparing to unpack .../43-python3-markupsafe_2.1.5-1build4_amd64.deb ... 552s Unpacking python3-markupsafe (2.1.5-1build4) over (2.1.5-1build3) ... 552s Preparing to unpack .../44-python3-jinja2_3.1.5-2ubuntu1_all.deb ... 553s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 553s Preparing to unpack .../45-cloud-init-base_25.1-0ubuntu3_all.deb ... 553s Unpacking cloud-init-base (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 553s Preparing to unpack .../46-libbrotli1_1.1.0-2build4_amd64.deb ... 553s Unpacking libbrotli1:amd64 (1.1.0-2build4) over (1.1.0-2build3) ... 553s Preparing to unpack .../47-curl_8.12.1-3ubuntu1_amd64.deb ... 553s Unpacking curl (8.12.1-3ubuntu1) over (8.12.1-2ubuntu1) ... 553s Preparing to unpack .../48-libcurl4t64_8.12.1-3ubuntu1_amd64.deb ... 553s Unpacking libcurl4t64:amd64 (8.12.1-3ubuntu1) over (8.12.1-2ubuntu1) ... 553s Preparing to unpack .../49-exfatprogs_1.2.8-1_amd64.deb ... 553s Unpacking exfatprogs (1.2.8-1) over (1.2.7-3) ... 553s Preparing to unpack .../50-libcurl3t64-gnutls_8.12.1-3ubuntu1_amd64.deb ... 553s Unpacking libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) over (8.12.1-2ubuntu1) ... 553s Preparing to unpack .../51-fwupd_2.0.6-4_amd64.deb ... 553s Unpacking fwupd (2.0.6-4) over (2.0.6-3) ... 554s Preparing to unpack .../52-libfwupd3_2.0.6-4_amd64.deb ... 554s Unpacking libfwupd3:amd64 (2.0.6-4) over (2.0.6-3) ... 554s Preparing to unpack .../53-libmm-glib0_1.23.4-0ubuntu3_amd64.deb ... 554s Unpacking libmm-glib0:amd64 (1.23.4-0ubuntu3) over (1.23.4-0ubuntu2) ... 554s Preparing to unpack .../54-htop_3.4.0-2_amd64.deb ... 554s Unpacking htop (3.4.0-2) over (3.3.0-5) ... 554s Preparing to unpack .../55-linux-firmware_20250310.git9e1370d3-0ubuntu1_amd64.deb ... 554s Unpacking linux-firmware (20250310.git9e1370d3-0ubuntu1) over (20250204.git0fd450ee-0ubuntu1) ... 557s Preparing to unpack .../56-initramfs-tools_0.146ubuntu1_all.deb ... 557s Unpacking initramfs-tools (0.146ubuntu1) over (0.145ubuntu3) ... 557s Preparing to unpack .../57-initramfs-tools-core_0.146ubuntu1_all.deb ... 557s Unpacking initramfs-tools-core (0.146ubuntu1) over (0.145ubuntu3) ... 557s Preparing to unpack .../58-initramfs-tools-bin_0.146ubuntu1_amd64.deb ... 557s Unpacking initramfs-tools-bin (0.146ubuntu1) over (0.145ubuntu3) ... 557s Selecting previously unselected package libdebuginfod1t64:amd64. 557s Preparing to unpack .../59-libdebuginfod1t64_0.192-4_amd64.deb ... 557s Unpacking libdebuginfod1t64:amd64 (0.192-4) ... 557s Preparing to unpack .../60-libftdi1-2_1.5-8build1_amd64.deb ... 557s Unpacking libftdi1-2:amd64 (1.5-8build1) over (1.5-8) ... 557s Preparing to unpack .../61-libgpgme11t64_1.24.2-1ubuntu2_amd64.deb ... 557s Unpacking libgpgme11t64:amd64 (1.24.2-1ubuntu2) over (1.24.2-1ubuntu1) ... 557s Preparing to unpack .../62-libjemalloc2_5.3.0-3_amd64.deb ... 557s Unpacking libjemalloc2:amd64 (5.3.0-3) over (5.3.0-2build1) ... 558s Selecting previously unselected package linux-modules-6.14.0-10-generic. 558s Preparing to unpack .../63-linux-modules-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 558s Unpacking linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 558s Selecting previously unselected package linux-image-6.14.0-10-generic. 558s Preparing to unpack .../64-linux-image-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 558s Unpacking linux-image-6.14.0-10-generic (6.14.0-10.10) ... 558s Selecting previously unselected package linux-modules-extra-6.14.0-10-generic. 558s Preparing to unpack .../65-linux-modules-extra-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 558s Unpacking linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 559s Preparing to unpack .../66-linux-generic_6.14.0-10.10_amd64.deb ... 559s Unpacking linux-generic (6.14.0-10.10) over (6.12.0-16.16+2) ... 559s Preparing to unpack .../67-linux-image-generic_6.14.0-10.10_amd64.deb ... 559s Unpacking linux-image-generic (6.14.0-10.10) over (6.12.0-16.16+2) ... 559s Preparing to unpack .../68-linux-virtual_6.14.0-10.10_amd64.deb ... 559s Unpacking linux-virtual (6.14.0-10.10) over (6.12.0-16.16+2) ... 559s Preparing to unpack .../69-linux-image-virtual_6.14.0-10.10_amd64.deb ... 559s Unpacking linux-image-virtual (6.14.0-10.10) over (6.12.0-16.16+2) ... 559s Preparing to unpack .../70-linux-headers-virtual_6.14.0-10.10_amd64.deb ... 559s Unpacking linux-headers-virtual (6.14.0-10.10) over (6.12.0-16.16+2) ... 559s Selecting previously unselected package linux-headers-6.14.0-10. 559s Preparing to unpack .../71-linux-headers-6.14.0-10_6.14.0-10.10_all.deb ... 559s Unpacking linux-headers-6.14.0-10 (6.14.0-10.10) ... 563s Selecting previously unselected package linux-headers-6.14.0-10-generic. 563s Preparing to unpack .../72-linux-headers-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 563s Unpacking linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 564s Preparing to unpack .../73-linux-headers-generic_6.14.0-10.10_amd64.deb ... 564s Unpacking linux-headers-generic (6.14.0-10.10) over (6.12.0-16.16+2) ... 564s Selecting previously unselected package linux-perf. 564s Preparing to unpack .../74-linux-perf_6.14.0-10.10_amd64.deb ... 564s Unpacking linux-perf (6.14.0-10.10) ... 565s Selecting previously unselected package linux-tools-6.14.0-10. 565s Preparing to unpack .../75-linux-tools-6.14.0-10_6.14.0-10.10_amd64.deb ... 565s Unpacking linux-tools-6.14.0-10 (6.14.0-10.10) ... 565s Selecting previously unselected package linux-tools-6.14.0-10-generic. 565s Preparing to unpack .../76-linux-tools-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 565s Unpacking linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 565s Preparing to unpack .../77-pinentry-curses_1.3.1-2ubuntu3_amd64.deb ... 565s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 565s Preparing to unpack .../78-python3-lazr.uri_1.0.6-6_all.deb ... 565s Unpacking python3-lazr.uri (1.0.6-6) over (1.0.6-5) ... 565s Preparing to unpack .../79-python3-rpds-py_0.21.0-2ubuntu2_amd64.deb ... 565s Unpacking python3-rpds-py (0.21.0-2ubuntu2) over (0.21.0-2ubuntu1) ... 565s Preparing to unpack .../80-python3-systemd_235-1build6_amd64.deb ... 565s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 565s Preparing to unpack .../81-python3.13-gdbm_3.13.2-2_amd64.deb ... 565s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 565s Preparing to unpack .../82-ubuntu-kernel-accessories_1.549_amd64.deb ... 565s Unpacking ubuntu-kernel-accessories (1.549) over (1.548) ... 565s Preparing to unpack .../83-cloud-init_25.1-0ubuntu3_all.deb ... 565s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 565s Preparing to unpack .../84-python3-bcrypt_4.2.0-2.1build1_amd64.deb ... 565s Unpacking python3-bcrypt (4.2.0-2.1build1) over (4.2.0-2.1) ... 565s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 565s Setting up media-types (13.0.0) ... 565s Installing new version of config file /etc/mime.types ... 565s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 565s Setting up ubuntu-kernel-accessories (1.549) ... 565s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 565s Setting up pci.ids (0.0~2025.03.09-1) ... 565s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 565s Setting up apt-utils (2.9.33) ... 565s Setting up libdebuginfod-common (0.192-4) ... 565s Setting up exfatprogs (1.2.8-1) ... 565s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 565s Setting up bpftool (7.6.0+6.14.0-10.10) ... 565s Setting up libestr0:amd64 (0.1.11-2) ... 565s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 565s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 565s Setting up dosfstools (4.2-1.2) ... 565s Setting up rsyslog (8.2412.0-2ubuntu2) ... 566s info: The user `syslog' is already a member of `adm'. 567s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 567s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 567s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 567s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 567s Setting up systemd (257.3-1ubuntu3) ... 567s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 567s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 567s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 568s Setting up libparted2t64:amd64 (3.6-5) ... 568s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 568s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 568s Setting up linux-headers-generic (6.14.0-10.10) ... 568s Setting up libjemalloc2:amd64 (5.3.0-3) ... 568s Setting up locales (2.41-1ubuntu1) ... 568s Installing new version of config file /etc/locale.alias ... 569s Generating locales (this might take a while)... 571s en_US.UTF-8... done 571s Generation complete. 571s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 571s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 571s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 571s Installing new version of config file /etc/apparmor.d/fusermount3 ... 571s Installing new version of config file /etc/apparmor.d/lsusb ... 571s Installing new version of config file /etc/apparmor.d/openvpn ... 572s Reloading AppArmor profiles 574s Setting up libftdi1-2:amd64 (1.5-8build1) ... 574s Setting up libglib2.0-data (2.84.0-1) ... 574s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 574s Setting up libncurses6:amd64 (6.5+20250216-2) ... 574s Setting up strace (6.13+ds-1ubuntu1) ... 574s Setting up xz-utils (5.6.4-1) ... 574s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 574s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 575s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 575s Setting up udev (257.3-1ubuntu3) ... 576s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 578s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 578s Setting up libpci3:amd64 (1:3.13.0-2) ... 578s Setting up whiptail (0.52.24-4ubuntu2) ... 578s Setting up python-apt-common (2.9.9build1) ... 578s Setting up pnp.ids (0.393-3) ... 578s Setting up libnl-3-200:amd64 (3.7.0-1) ... 578s Setting up python3.13-minimal (3.13.2-2) ... 579s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ... 579s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 579s Setting up libc-dev-bin (2.41-1ubuntu1) ... 579s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 579s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 579s Setting up rsync (3.4.1+ds1-3) ... 580s rsync.service is a disabled or a static unit not running, not starting it. 580s Setting up python3.13-gdbm (3.13.2-2) ... 580s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 580s Setting up systemd-resolved (257.3-1ubuntu3) ... 580s Setting up initramfs-tools-bin (0.146ubuntu1) ... 580s Setting up ncurses-term (6.5+20250216-2) ... 580s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 580s Setting up libpython3.13:amd64 (3.13.2-2) ... 580s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 580s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 580s Setting up systemd-sysv (257.3-1ubuntu3) ... 580s Setting up linux-headers-virtual (6.14.0-10.10) ... 580s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 580s Setting up python3.13 (3.13.2-2) ... 581s Setting up htop (3.4.0-2) ... 581s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 583s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 583s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 583s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 583s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 583s Setting up parted (3.6-5) ... 583s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ... 583s Setting up python3 (3.13.2-2) ... 584s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ... 584s Setting up python3-markupsafe (2.1.5-1build4) ... 584s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 586s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 586s Setting up hwdata (0.393-3) ... 586s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 587s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 587s No schema files found: doing nothing. 587s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 587s Setting up linux-perf (6.14.0-10.10) ... 587s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 587s Setting up pciutils (1:3.13.0-2) ... 587s Setting up python3-rpds-py (0.21.0-2ubuntu2) ... 587s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 587s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 587s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 587s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 587s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 587s Setting up curl (8.12.1-3ubuntu1) ... 587s Setting up linux-image-virtual (6.14.0-10.10) ... 587s Setting up initramfs-tools-core (0.146ubuntu1) ... 587s Setting up linux-tools-common (6.14.0-10.10) ... 587s Setting up python3-systemd (235-1build6) ... 587s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 587s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 587s Setting up linux-image-generic (6.14.0-10.10) ... 587s Setting up python3-dbus (1.3.2-5build5) ... 587s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 587s Setting up initramfs-tools (0.146ubuntu1) ... 587s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 587s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 587s update-initramfs: deferring update (trigger activated) 587s Setting up linux-generic (6.14.0-10.10) ... 587s Setting up ubuntu-minimal (1.549) ... 587s Setting up python3-apt (2.9.9build1) ... 587s Setting up python3-bcrypt (4.2.0-2.1build1) ... 588s Setting up python3-yaml (6.0.2-1build2) ... 588s Setting up libfwupd3:amd64 (2.0.6-4) ... 588s Setting up python3-lazr.uri (1.0.6-6) ... 588s Setting up binutils (2.44-3ubuntu1) ... 588s Setting up ubuntu-standard (1.549) ... 588s Setting up cloud-init-base (25.1-0ubuntu3) ... 590s Setting up linux-virtual (6.14.0-10.10) ... 590s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 590s Setting up python3-gi (3.50.0-4build1) ... 590s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 590s Setting up fwupd (2.0.6-4) ... 590s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 591s Setting up cloud-init (25.1-0ubuntu3) ... 591s Processing triggers for man-db (2.13.0-1) ... 593s Processing triggers for dbus (1.16.2-1ubuntu1) ... 593s Processing triggers for shared-mime-info (2.4-5) ... 593s Warning: program compiled against libxml 212 using older 209 593s Processing triggers for libc-bin (2.41-1ubuntu1) ... 593s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 593s /etc/kernel/postinst.d/initramfs-tools: 593s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 593s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 605s /etc/kernel/postinst.d/zz-update-grub: 605s Sourcing file `/etc/default/grub' 605s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 605s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 605s Generating grub configuration file ... 605s Found linux image: /boot/vmlinuz-6.14.0-10-generic 605s Found initrd image: /boot/initrd.img-6.14.0-10-generic 606s Found linux image: /boot/vmlinuz-6.12.0-16-generic 606s Found initrd image: /boot/initrd.img-6.12.0-16-generic 606s Found linux image: /boot/vmlinuz-6.11.0-8-generic 606s Found initrd image: /boot/initrd.img-6.11.0-8-generic 606s Warning: os-prober will not be executed to detect other bootable partitions. 606s Systems on them will not be added to the GRUB boot configuration. 606s Check GRUB_DISABLE_OS_PROBER documentation entry. 606s Adding boot menu entry for UEFI Firmware Settings ... 606s done 606s Processing triggers for initramfs-tools (0.146ubuntu1) ... 606s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 606s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 617s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 617s + /usr/lib/apt/apt-helper analyze-pattern ?true 617s + uname -r 617s + sed s/\./\\./g 617s + running_kernel_pattern=^linux-.*6\.12\.0-16-generic.* 617s + + apt list ?obsolete 617s + grep -v ^linux-.*6\.12\.0-16-generic.* 617s tail -n+2 617s + cut -d/ -f1 619s + obsolete_pkgs=linux-headers-6.11.0-8-generic 619s linux-headers-6.11.0-8 619s linux-headers-6.12.0-16 619s linux-image-6.11.0-8-generic 619s linux-modules-6.11.0-8-generic 619s linux-tools-6.11.0-8-generic 619s linux-tools-6.11.0-8 619s linux-tools-6.12.0-16 619s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-headers-6.12.0-16 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 linux-tools-6.12.0-16 619s Reading package lists... 619s Building dependency tree... 619s Reading state information... 619s Solving dependencies... 620s The following packages will be REMOVED: 620s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 620s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 620s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 620s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 620s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 620s linux-tools-6.12.0-16-generic* 620s 0 upgraded, 0 newly installed, 15 to remove and 5 not upgraded. 620s After this operation, 371 MB disk space will be freed. 620s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 620s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 620s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 620s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 620s Removing libpython3.12t64:amd64 (3.12.9-1) ... 620s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 620s Removing libnsl2:amd64 (1.3.0-3build3) ... 620s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 620s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 621s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 623s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 624s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 626s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 627s /etc/kernel/postrm.d/initramfs-tools: 627s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 627s /etc/kernel/postrm.d/zz-update-grub: 627s Sourcing file `/etc/default/grub' 627s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 627s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 627s Generating grub configuration file ... 627s Found linux image: /boot/vmlinuz-6.14.0-10-generic 627s Found initrd image: /boot/initrd.img-6.14.0-10-generic 627s Found linux image: /boot/vmlinuz-6.12.0-16-generic 627s Found initrd image: /boot/initrd.img-6.12.0-16-generic 627s Warning: os-prober will not be executed to detect other bootable partitions. 627s Systems on them will not be added to the GRUB boot configuration. 627s Check GRUB_DISABLE_OS_PROBER documentation entry. 627s Adding boot menu entry for UEFI Firmware Settings ... 627s done 627s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 628s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 628s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 628s Processing triggers for libc-bin (2.41-1ubuntu1) ... 628s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84830 files and directories currently installed.) 628s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 628s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 628s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 628s + grep -q trusty /etc/lsb-release 628s + [ ! -d /usr/share/doc/unattended-upgrades ] 628s + [ ! -d /usr/share/doc/lxd ] 628s + [ ! -d /usr/share/doc/lxd-client ] 628s + [ ! -d /usr/share/doc/snapd ] 628s + type iptables 628s + cat 628s + chmod 755 /etc/rc.local 628s + . /etc/rc.local 628s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 628s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 628s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 628s + uname -m 628s + [ x86_64 = ppc64le ] 628s + [ -d /run/systemd/system ] 628s + systemd-detect-virt --quiet --vm 628s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 628s + cat 628s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 628s + echo COMPRESS=lz4 628s autopkgtest [22:42:53]: upgrading testbed (apt dist-upgrade and autopurge) 628s Reading package lists... 629s Building dependency tree... 629s Reading state information... 629s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 629s Starting 2 pkgProblemResolver with broken count: 0 629s Done 630s Entering ResolveByKeep 630s 630s Calculating upgrade... 631s The following packages will be upgraded: 631s libc-bin libc-dev-bin libc6 libc6-dev locales 631s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 631s Need to get 10.5 MB of archives. 631s After this operation, 1024 B of additional disk space will be used. 631s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 631s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 631s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 632s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 632s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 632s Preconfiguring packages ... 632s Fetched 10.5 MB in 1s (10.2 MB/s) 632s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 632s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 632s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 632s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 632s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 633s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 633s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 633s Setting up libc6:amd64 (2.41-1ubuntu2) ... 633s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 633s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 633s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 633s Setting up libc-bin (2.41-1ubuntu2) ... 633s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 633s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 633s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 634s Setting up locales (2.41-1ubuntu2) ... 634s Generating locales (this might take a while)... 636s en_US.UTF-8... done 636s Generation complete. 636s Setting up libc-dev-bin (2.41-1ubuntu2) ... 636s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 636s Processing triggers for man-db (2.13.0-1) ... 637s Processing triggers for systemd (257.3-1ubuntu3) ... 638s Reading package lists... 638s Building dependency tree... 638s Reading state information... 638s Starting pkgProblemResolver with broken count: 0 638s Starting 2 pkgProblemResolver with broken count: 0 638s Done 639s Solving dependencies... 639s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 639s autopkgtest [22:43:04]: rebooting testbed after setup commands that affected boot 666s Reading package lists... 667s Building dependency tree... 667s Reading state information... 667s Starting pkgProblemResolver with broken count: 0 667s Starting 2 pkgProblemResolver with broken count: 0 667s Done 668s The following NEW packages will be installed: 668s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 668s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 668s g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 668s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 668s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8 668s libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev 668s libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev libgfortran5 668s libgomp1 libgraphite2-3 libgsl28 libgslcblas0 libharfbuzz0b libhwasan0 668s libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 668s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblerc4 668s liblsan0 liblzma-dev libmpc3 libncurses-dev libpango-1.0-0 668s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0 668s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 668s libpng-dev libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev 668s libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 668s libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 668s libxt6t64 pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 668s r-cran-abind r-cran-deldir r-cran-goftest r-cran-gsl r-cran-lattice 668s r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-polyclip r-cran-rpart r-cran-sm 668s r-cran-spatial r-cran-spatstat r-cran-spatstat.data r-cran-spatstat.explore 668s r-cran-spatstat.geom r-cran-spatstat.linnet r-cran-spatstat.model 668s r-cran-spatstat.random r-cran-spatstat.sparse r-cran-spatstat.univar 668s r-cran-spatstat.utils r-cran-survival r-cran-tensor unzip x11-common 668s xdg-utils zip zlib1g-dev 668s 0 upgraded, 125 newly installed, 0 to remove and 0 not upgraded. 668s Need to get 190 MB of archives. 668s After this operation, 509 MB of additional disk space will be used. 668s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 668s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 668s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 669s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 669s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 669s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 669s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 669s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 669s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 669s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 669s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 669s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 669s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 669s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 669s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 669s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 669s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 670s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 670s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 670s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 670s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 671s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 671s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 671s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 671s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 671s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 671s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 671s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 671s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 671s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 671s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 671s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 671s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 671s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 671s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 672s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 672s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 672s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 672s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 672s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 672s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 672s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 672s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 672s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 672s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 672s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 672s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 672s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 672s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 672s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 672s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 672s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgslcblas0 amd64 2.8+dfsg-5 [290 kB] 672s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgsl28 amd64 2.8+dfsg-5 [1285 kB] 672s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 672s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 672s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 672s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 672s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 672s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 672s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 672s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 672s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 672s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 672s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 673s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 673s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 673s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 673s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 673s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 673s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 673s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 673s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 673s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 673s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 673s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 673s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 673s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 673s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 673s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 673s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 673s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 673s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 673s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 673s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 673s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 673s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 673s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 673s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 673s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 673s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 673s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 673s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 673s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 673s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 673s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 674s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 674s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 674s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 674s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 674s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 674s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 674s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 674s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 674s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-goftest amd64 1.2-3-1 [59.5 kB] 674s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gsl amd64 2.1-8-1build1 [486 kB] 674s Get:106 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 674s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 675s Get:108 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.167-1 [2320 kB] 675s Get:109 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 675s Get:110 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB] 675s Get:111 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB] 675s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB] 675s Get:113 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sm amd64 2.2-6.0-1 [788 kB] 675s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatial amd64 7.3-18-1 [137 kB] 675s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.utils amd64 3.1-2-1 [383 kB] 675s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.data all 3.1-4-1 [4047 kB] 675s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.univar amd64 3.1-1-1build1 [310 kB] 675s Get:118 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.geom amd64 3.3-5-1 [3959 kB] 675s Get:119 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.random amd64 3.3-2-1 [1172 kB] 675s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tensor all 1.5-4 [15.7 kB] 675s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.sparse amd64 3.1-0-1 [221 kB] 675s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.explore amd64 3.3-4-1 [3347 kB] 676s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.model amd64 3.3-4-1 [3397 kB] 676s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.linnet amd64 3.2-5-1 [1509 kB] 676s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat amd64 3.3-1-1 [4121 kB] 677s Preconfiguring packages ... 677s Fetched 190 MB in 8s (23.0 MB/s) 677s Selecting previously unselected package libisl23:amd64. 677s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84827 files and directories currently installed.) 677s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 677s Unpacking libisl23:amd64 (0.27-1) ... 677s Selecting previously unselected package libmpc3:amd64. 677s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 677s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 677s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 677s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 677s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 677s Selecting previously unselected package cpp-14. 677s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 677s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 677s Selecting previously unselected package cpp-x86-64-linux-gnu. 677s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 677s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 677s Selecting previously unselected package cpp. 677s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 677s Unpacking cpp (4:14.2.0-1ubuntu1) ... 677s Selecting previously unselected package libcc1-0:amd64. 677s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 677s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 677s Selecting previously unselected package libgomp1:amd64. 677s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 677s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 677s Selecting previously unselected package libitm1:amd64. 677s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ... 677s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 677s Selecting previously unselected package libasan8:amd64. 677s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ... 677s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 678s Selecting previously unselected package liblsan0:amd64. 678s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 678s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 678s Selecting previously unselected package libtsan2:amd64. 678s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 678s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 678s Selecting previously unselected package libubsan1:amd64. 678s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_amd64.deb ... 678s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ... 678s Selecting previously unselected package libhwasan0:amd64. 678s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_amd64.deb ... 678s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ... 678s Selecting previously unselected package libquadmath0:amd64. 678s Preparing to unpack .../014-libquadmath0_15-20250222-0ubuntu1_amd64.deb ... 678s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ... 678s Selecting previously unselected package libgcc-14-dev:amd64. 678s Preparing to unpack .../015-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ... 678s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 678s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 678s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 678s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 678s Selecting previously unselected package gcc-14. 678s Preparing to unpack .../017-gcc-14_14.2.0-17ubuntu3_amd64.deb ... 678s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 678s Selecting previously unselected package gcc-x86-64-linux-gnu. 678s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 678s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 678s Selecting previously unselected package gcc. 678s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 678s Unpacking gcc (4:14.2.0-1ubuntu1) ... 678s Selecting previously unselected package libstdc++-14-dev:amd64. 678s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ... 678s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 679s Selecting previously unselected package g++-14-x86-64-linux-gnu. 679s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 679s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 679s Selecting previously unselected package g++-14. 679s Preparing to unpack .../022-g++-14_14.2.0-17ubuntu3_amd64.deb ... 679s Unpacking g++-14 (14.2.0-17ubuntu3) ... 679s Selecting previously unselected package g++-x86-64-linux-gnu. 679s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 679s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 679s Selecting previously unselected package g++. 679s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 679s Unpacking g++ (4:14.2.0-1ubuntu1) ... 679s Selecting previously unselected package build-essential. 679s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ... 679s Unpacking build-essential (12.10ubuntu1) ... 679s Selecting previously unselected package dctrl-tools. 679s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ... 679s Unpacking dctrl-tools (2.24-3build3) ... 679s Selecting previously unselected package fonts-dejavu-mono. 679s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ... 679s Unpacking fonts-dejavu-mono (2.37-8) ... 679s Selecting previously unselected package fonts-dejavu-core. 679s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ... 679s Unpacking fonts-dejavu-core (2.37-8) ... 679s Selecting previously unselected package fontconfig-config. 679s Preparing to unpack .../029-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 679s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 680s Selecting previously unselected package libfontconfig1:amd64. 680s Preparing to unpack .../030-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 680s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 680s Selecting previously unselected package fontconfig. 680s Preparing to unpack .../031-fontconfig_2.15.0-2ubuntu1_amd64.deb ... 680s Unpacking fontconfig (2.15.0-2ubuntu1) ... 680s Selecting previously unselected package libgfortran5:amd64. 680s Preparing to unpack .../032-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 680s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 680s Selecting previously unselected package libgfortran-14-dev:amd64. 680s Preparing to unpack .../033-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 680s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 680s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 680s Preparing to unpack .../034-gfortran-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 680s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 680s Selecting previously unselected package gfortran-14. 680s Preparing to unpack .../035-gfortran-14_14.2.0-17ubuntu3_amd64.deb ... 680s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 680s Selecting previously unselected package gfortran-x86-64-linux-gnu. 680s Preparing to unpack .../036-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 680s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 680s Selecting previously unselected package gfortran. 680s Preparing to unpack .../037-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ... 680s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 680s Selecting previously unselected package icu-devtools. 680s Preparing to unpack .../038-icu-devtools_76.1-1ubuntu2_amd64.deb ... 680s Unpacking icu-devtools (76.1-1ubuntu2) ... 680s Selecting previously unselected package libblas3:amd64. 680s Preparing to unpack .../039-libblas3_3.12.1-2_amd64.deb ... 680s Unpacking libblas3:amd64 (3.12.1-2) ... 680s Selecting previously unselected package libblas-dev:amd64. 680s Preparing to unpack .../040-libblas-dev_3.12.1-2_amd64.deb ... 680s Unpacking libblas-dev:amd64 (3.12.1-2) ... 680s Selecting previously unselected package libbz2-dev:amd64. 680s Preparing to unpack .../041-libbz2-dev_1.0.8-6_amd64.deb ... 680s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 680s Selecting previously unselected package libpixman-1-0:amd64. 680s Preparing to unpack .../042-libpixman-1-0_0.44.0-3_amd64.deb ... 680s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 680s Selecting previously unselected package libxcb-render0:amd64. 680s Preparing to unpack .../043-libxcb-render0_1.17.0-2_amd64.deb ... 680s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 680s Selecting previously unselected package libxcb-shm0:amd64. 680s Preparing to unpack .../044-libxcb-shm0_1.17.0-2_amd64.deb ... 680s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 680s Selecting previously unselected package libxrender1:amd64. 680s Preparing to unpack .../045-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 680s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 680s Selecting previously unselected package libcairo2:amd64. 680s Preparing to unpack .../046-libcairo2_1.18.2-2_amd64.deb ... 680s Unpacking libcairo2:amd64 (1.18.2-2) ... 680s Selecting previously unselected package libdatrie1:amd64. 680s Preparing to unpack .../047-libdatrie1_0.2.13-3build1_amd64.deb ... 680s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 680s Selecting previously unselected package libdeflate0:amd64. 680s Preparing to unpack .../048-libdeflate0_1.23-1_amd64.deb ... 680s Unpacking libdeflate0:amd64 (1.23-1) ... 681s Selecting previously unselected package libdeflate-dev:amd64. 681s Preparing to unpack .../049-libdeflate-dev_1.23-1_amd64.deb ... 681s Unpacking libdeflate-dev:amd64 (1.23-1) ... 681s Selecting previously unselected package libgraphite2-3:amd64. 681s Preparing to unpack .../050-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 681s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 681s Selecting previously unselected package libgslcblas0:amd64. 681s Preparing to unpack .../051-libgslcblas0_2.8+dfsg-5_amd64.deb ... 681s Unpacking libgslcblas0:amd64 (2.8+dfsg-5) ... 681s Selecting previously unselected package libgsl28:amd64. 681s Preparing to unpack .../052-libgsl28_2.8+dfsg-5_amd64.deb ... 681s Unpacking libgsl28:amd64 (2.8+dfsg-5) ... 681s Selecting previously unselected package libharfbuzz0b:amd64. 681s Preparing to unpack .../053-libharfbuzz0b_10.2.0-1_amd64.deb ... 681s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 681s Selecting 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681s Preparing to unpack .../059-libjpeg8_8c-2ubuntu11_amd64.deb ... 681s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 681s Selecting previously unselected package libjpeg8-dev:amd64. 681s Preparing to unpack .../060-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 681s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 681s Selecting previously unselected package libjpeg-dev:amd64. 681s Preparing to unpack .../061-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 681s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 681s Selecting previously unselected package liblapack3:amd64. 681s Preparing to unpack .../062-liblapack3_3.12.1-2_amd64.deb ... 681s Unpacking liblapack3:amd64 (3.12.1-2) ... 681s Selecting previously unselected package liblapack-dev:amd64. 681s Preparing to unpack .../063-liblapack-dev_3.12.1-2_amd64.deb ... 681s Unpacking liblapack-dev:amd64 (3.12.1-2) ... 682s Selecting previously unselected package liblerc4:amd64. 682s Preparing to unpack .../064-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 682s 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(15-20250222-0ubuntu1) ... 685s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 685s Setting up libpcre2-posix3:amd64 (10.45-1) ... 685s Setting up libhwasan0:amd64 (15-20250222-0ubuntu1) ... 685s Setting up libasan8:amd64 (15-20250222-0ubuntu1) ... 685s Setting up libharfbuzz0b:amd64 (10.2.0-1) ... 685s Setting up libthai-data (0.1.29-2build1) ... 685s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 685s Setting up libpaper2:amd64 (2.2.5-0.3) ... 685s Setting up libtsan2:amd64 (15-20250222-0ubuntu1) ... 685s Setting up libisl23:amd64 (0.27-1) ... 685s Setting up libgsl28:amd64 (2.8+dfsg-5) ... 685s Setting up libdeflate-dev:amd64 (1.23-1) ... 685s Setting up libicu-dev:amd64 (76.1-1ubuntu2) ... 685s Setting up xdg-utils (1.2.1-2ubuntu1) ... 685s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 685s Setting up libcc1-0:amd64 (15-20250222-0ubuntu1) ... 685s Setting up liblsan0:amd64 (15-20250222-0ubuntu1) ... 685s Setting up libblas-dev:amd64 (3.12.1-2) ... 685s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 685s Setting up dctrl-tools (2.24-3build3) ... 685s Setting up libitm1:amd64 (15-20250222-0ubuntu1) ... 685s Setting up libbz2-dev:amd64 (1.0.8-6) ... 685s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 685s Setting up libice6:amd64 (2:1.1.1-1) ... 685s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ... 685s Setting up liblapack3:amd64 (3.12.1-2) ... 685s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 685s Setting up libpcre2-dev:amd64 (10.45-1) ... 685s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 686s Setting up libpng-dev:amd64 (1.6.47-1) ... 686s Setting up libpaper-utils (2.2.5-0.3) ... 686s Setting up pkgconf:amd64 (1.8.1-4) ... 686s Setting up libthai0:amd64 (0.1.29-2build1) ... 686s Setting up liblapack-dev:amd64 (3.12.1-2) ... 686s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 686s Setting up cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 686s Setting up cpp-14 (14.2.0-17ubuntu3) ... 686s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 686s Setting up libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 686s Setting up libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 686s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 686s Setting up libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 686s Setting up libsm6:amd64 (2:1.2.4-1) ... 686s Setting up cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 686s Setting up libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 686s Setting up fontconfig (2.15.0-2ubuntu1) ... 688s Regenerating fonts cache... done. 688s Setting up libxft2:amd64 (2.3.6-1build1) ... 688s Setting up libtk8.6:amd64 (8.6.16-1) ... 688s Setting up libpango-1.0-0:amd64 (1.56.2-1) ... 688s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 688s Setting up libcairo2:amd64 (1.18.2-2) ... 688s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ... 688s Setting up cpp (4:14.2.0-1ubuntu1) ... 688s Setting up gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 688s Setting up libpangoft2-1.0-0:amd64 (1.56.2-1) ... 688s Setting up libpangocairo-1.0-0:amd64 (1.56.2-1) ... 688s Setting up gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 688s Setting up gcc-14 (14.2.0-17ubuntu3) ... 688s Setting up gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 688s Setting up r-base-core (4.4.3-1) ... 688s Creating config file /etc/R/Renviron with new version 688s Setting up r-cran-lattice (0.22-6-1) ... 688s Setting up r-cran-nlme (3.1.167-1) ... 688s Setting up g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 688s Setting up r-cran-spatstat.utils (3.1-2-1) ... 688s Setting up g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 688s Setting up r-cran-tensor (1.5-4) ... 688s Setting up g++-14 (14.2.0-17ubuntu3) ... 688s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 688s Setting up r-cran-spatstat.univar (3.1-1-1build1) ... 688s Setting up r-cran-gsl (2.1-8-1build1) ... 688s Setting up r-cran-spatial (7.3-18-1) ... 688s Setting up r-cran-abind (1.4-8-1) ... 688s Setting up r-cran-sm (2.2-6.0-1) ... 688s Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 688s Setting up r-cran-polyclip (1.10-7-1) ... 688s Setting up gcc (4:14.2.0-1ubuntu1) ... 688s Setting up r-cran-deldir (2.0-4-1build1) ... 688s Setting up r-cran-goftest (1.2-3-1) ... 688s Setting up r-cran-matrix (1.7-3-1) ... 688s Setting up r-cran-spatstat.sparse (3.1-0-1) ... 688s Setting up r-cran-mgcv (1.9-1-1) ... 688s Setting up g++ (4:14.2.0-1ubuntu1) ... 688s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 688s Setting up build-essential (12.10ubuntu1) ... 688s Setting up r-cran-survival (3.8-3-1) ... 688s Setting up gfortran (4:14.2.0-1ubuntu1) ... 688s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 688s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 688s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 688s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 688s Setting up r-cran-spatstat.data (3.1-4-1) ... 688s Setting up r-cran-spatstat.geom (3.3-5-1) ... 688s Setting up r-base-dev (4.4.3-1) ... 688s Setting up r-cran-rpart (4.1.24-1) ... 688s Setting up r-cran-spatstat.random (3.3-2-1) ... 688s Setting up r-cran-spatstat.explore (3.3-4-1) ... 688s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 688s Setting up r-cran-spatstat.model (3.3-4-1) ... 688s Setting up r-cran-spatstat.linnet (3.2-5-1) ... 688s Setting up r-cran-spatstat (3.3-1-1) ... 688s Processing triggers for install-info (7.1.1-1) ... 688s Processing triggers for libc-bin (2.41-1ubuntu2) ... 688s Processing triggers for man-db (2.13.0-1) ... 693s autopkgtest [22:43:58]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 693s autopkgtest [22:43:58]: test pkg-r-autopkgtest: [----------------------- 693s Test: Try to load the R library spatstat.explore 693s 693s R version 4.4.3 (2025-02-28) -- "Trophy Case" 693s Copyright (C) 2025 The R Foundation for Statistical Computing 693s Platform: x86_64-pc-linux-gnu 693s 693s R is free software and comes with ABSOLUTELY NO WARRANTY. 693s You are welcome to redistribute it under certain conditions. 693s Type 'license()' or 'licence()' for distribution details. 693s 693s R is a collaborative project with many contributors. 693s Type 'contributors()' for more information and 693s 'citation()' on how to cite R or R packages in publications. 693s 693s Type 'demo()' for some demos, 'help()' for on-line help, or 693s 'help.start()' for an HTML browser interface to help. 693s Type 'q()' to quit R. 693s 693s > library('spatstat.explore') 693s Loading required package: spatstat.data 694s Loading required package: spatstat.univar 694s spatstat.univar 3.1-1 694s Loading required package: spatstat.geom 694s spatstat.geom 3.3-5 694s Loading required package: spatstat.random 695s spatstat.random 3.3-2 695s Loading required package: nlme 695s spatstat.explore 3.3-4 695s > 695s > 695s Other tests are currently unsupported! 695s They will be progressively added. 695s autopkgtest [22:44:00]: test pkg-r-autopkgtest: -----------------------] 695s autopkgtest [22:44:00]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 695s pkg-r-autopkgtest PASS 696s autopkgtest [22:44:01]: @@@@@@@@@@@@@@@@@@@@ summary 696s run-unit-test PASS 696s pkg-r-autopkgtest PASS 701s nova [W] Skipping flock for amd64 701s Creating nova instance adt-plucky-amd64-r-cran-spatstat.explore-20250315-223225-juju-7f2275-prod-proposed-migration-environment-15-546be2e0-7433-4338-9d2a-713da9692d37 from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)... 701s nova [W] Timed out waiting for 83b806e3-6414-4224-bd6c-d989c826350f to get deleted. 701s nova [W] Skipping flock for amd64 701s Creating nova instance adt-plucky-amd64-r-cran-spatstat.explore-20250315-223225-juju-7f2275-prod-proposed-migration-environment-15-546be2e0-7433-4338-9d2a-713da9692d37 from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)... 701s nova [W] Timed out waiting for 5255189a-8cd1-48f7-b925-0f9aade90d23 to get deleted.