0s autopkgtest [14:40:59]: starting date and time: 2025-01-11 14:40:59+0000
  0s autopkgtest [14:40:59]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [14:40:59]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.mnxjmi46/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-spacetime --apt-upgrade r-cran-spacetime --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-spacetime/1.3-2-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-1.secgroup --name adt-plucky-amd64-r-cran-spacetime-20250111-132824-juju-7f2275-prod-proposed-migration-environment-20-d091f1d5-e512-48ab-9484-525a0ea59fbc --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
123s autopkgtest [14:43:02]: testbed dpkg architecture: amd64
123s autopkgtest [14:43:02]: testbed apt version: 2.9.18
124s autopkgtest [14:43:03]: @@@@@@@@@@@@@@@@@@@@ test bed setup
124s autopkgtest [14:43:03]: testbed release detected to be: None
125s autopkgtest [14:43:04]: updating testbed package index (apt update)
125s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
125s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
125s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
126s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
126s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.7 kB]
126s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [749 kB]
126s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [129 kB]
126s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B]
126s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [294 kB]
126s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [162 kB]
126s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2408 B]
126s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [40.1 kB]
126s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [365 kB]
126s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [946 kB]
126s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [3516 B]
126s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [13.0 kB]
126s Fetched 2801 kB in 1s (2441 kB/s)
127s Reading package lists...
127s Reading package lists...
127s Building dependency tree...
127s Reading state information...
128s Calculating upgrade...
128s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
128s Reading package lists...
128s Building dependency tree...
128s Reading state information...
128s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
128s autopkgtest [14:43:07]: upgrading testbed (apt dist-upgrade and autopurge)
128s Reading package lists...
128s Building dependency tree...
128s Reading state information...
129s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
129s Starting 2 pkgProblemResolver with broken count: 0
129s Done
129s Entering ResolveByKeep
129s 
129s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
130s Reading package lists...
130s Building dependency tree...
130s Reading state information...
130s Starting pkgProblemResolver with broken count: 0
130s Starting 2 pkgProblemResolver with broken count: 0
130s Done
130s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
133s autopkgtest [14:43:12]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024
133s autopkgtest [14:43:12]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-spacetime
134s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/universe r-cran-spacetime 1.3-2-1 (dsc) [2400 B]
134s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe r-cran-spacetime 1.3-2-1 (tar) [2319 kB]
134s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe r-cran-spacetime 1.3-2-1 (diff) [3240 B]
135s gpgv: Signature made Tue Oct  1 00:22:51 2024 UTC
135s gpgv:                using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502
135s gpgv:                issuer "plessy@debian.org"
135s gpgv: Can't check signature: No public key
135s dpkg-source: warning: cannot verify inline signature for ./r-cran-spacetime_1.3-2-1.dsc: no acceptable signature found
135s autopkgtest [14:43:14]: testing package r-cran-spacetime version 1.3-2-1
135s autopkgtest [14:43:14]: build not needed
136s autopkgtest [14:43:15]: test run-unit-test: preparing testbed
137s Reading package lists...
137s Building dependency tree...
137s Reading state information...
137s Starting pkgProblemResolver with broken count: 0
137s Starting 2 pkgProblemResolver with broken count: 0
137s Done
138s The following NEW packages will be installed:
138s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
138s   fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gdal-data
138s   gdal-plugins javascript-common libabsl20230802 libaec0 libaom3
138s   libarmadillo14 libarpack2t64 libavif16 libblas3 libblosc1 libcairo2
138s   libcfitsio10t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libfontconfig1
138s   libfreexl1 libfyba0t64 libgav1-1 libgdal36 libgeos-c1t64 libgeos3.13.0
138s   libgeotiff5 libgfortran5 libgif7 libgomp1 libgpgmepp6t64 libgraphite2-3
138s   libharfbuzz0b libhdf4-0-alt libhdf5-103-1t64 libhdf5-hl-100t64
138s   libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libice6 libjbig0
138s   libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3
138s   libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables
138s   libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax
138s   libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify
138s   libjs-sifter.js libjs-twitter-bootstrap-datepicker libkmlbase1t64
138s   libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 libltdl7
138s   liblua5.4-0 libminizip1t64 libmysqlclient24 libnetcdf19t64 libodbc2
138s   libodbcinst2 libogdi4.1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0
138s   libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libpoppler140
138s   libpq5 libproj25 libqhull-r8.0 librav1e0.7 librttopo1 libsharpyuv0 libsm6
138s   libsnappy1v5 libspatialite8t64 libsvtav1enc2 libsz2 libtcl8.6 libthai-data
138s   libthai0 libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1
138s   libwebp7 libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1
138s   libxss1 libxt6t64 libyuv0 littler mysql-common node-bootstrap-sass
138s   node-html5shiv node-normalize.css pandoc pandoc-data proj-data r-base-core
138s   r-cran-abind r-cran-base64enc r-cran-bdsmatrix r-cran-bslib r-cran-cachem
138s   r-cran-class r-cran-classint r-cran-cli r-cran-collapse r-cran-commonmark
138s   r-cran-crayon r-cran-dbi r-cran-digest r-cran-e1071 r-cran-evaluate
138s   r-cran-fastmap r-cran-fnn r-cran-fontawesome r-cran-foreign r-cran-formula
138s   r-cran-fs r-cran-generics r-cran-glue r-cran-gstat r-cran-highr
138s   r-cran-htmltools r-cran-httpuv r-cran-intervals r-cran-isocodes
138s   r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-later
138s   r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-lmtest r-cran-magrittr
138s   r-cran-mapdata r-cran-maps r-cran-markdown r-cran-mass r-cran-maxlik
138s   r-cran-memoise r-cran-mime r-cran-misctools r-cran-nlme r-cran-pkgkitten
138s   r-cran-plm r-cran-promises r-cran-proxy r-cran-r6 r-cran-rappdirs
138s   r-cran-raster r-cran-rbibutils r-cran-rcolorbrewer r-cran-rcpp r-cran-rdpack
138s   r-cran-rlang r-cran-rmarkdown r-cran-rpostgresql r-cran-s2 r-cran-sandwich
138s   r-cran-sass r-cran-sf r-cran-sftime r-cran-shiny r-cran-sourcetools
138s   r-cran-sp r-cran-spacetime r-cran-stars r-cran-terra r-cran-tinytex
138s   r-cran-units r-cran-withr r-cran-wk r-cran-xfun r-cran-xtable r-cran-xts
138s   r-cran-yaml r-cran-zoo unixodbc-common unzip x11-common xdg-utils zip
138s 0 upgraded, 211 newly installed, 0 to remove and 0 not upgraded.
138s Need to get 216 MB of archives.
138s After this operation, 656 MB of additional disk space will be used.
138s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
138s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
138s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB]
138s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB]
138s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB]
138s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
138s Get:7 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
138s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
138s Get:9 http://ftpmaster.internal/ubuntu plucky/universe amd64 gdal-data all 3.10.0+dfsg-1 [269 kB]
138s Get:10 http://ftpmaster.internal/ubuntu plucky/universe amd64 gdal-plugins amd64 3.10.0+dfsg-1 [25.4 kB]
138s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 11+nmu1 [5936 B]
138s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libabsl20230802 amd64 20230802.1-4ubuntu2 [563 kB]
138s Get:13 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB]
138s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libaom3 amd64 3.11.0-1 [2761 kB]
138s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-4 [332 kB]
138s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-12ubuntu1 [909 kB]
138s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-4 [3177 kB]
138s Get:18 http://ftpmaster.internal/ubuntu plucky/universe amd64 libarpack2t64 amd64 3.9.1-4 [120 kB]
138s Get:19 http://ftpmaster.internal/ubuntu plucky/universe amd64 libarmadillo14 amd64 1:14.2.1+dfsg-1 [105 kB]
138s Get:20 http://ftpmaster.internal/ubuntu plucky/universe amd64 libdav1d7 amd64 1.5.0-1 [732 kB]
138s Get:21 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgav1-1 amd64 0.19.0-3 [697 kB]
139s Get:22 http://ftpmaster.internal/ubuntu plucky/universe amd64 librav1e0.7 amd64 0.7.1-9 [1025 kB]
139s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2686 kB]
139s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB]
139s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
139s Get:26 http://ftpmaster.internal/ubuntu plucky/universe amd64 libyuv0 amd64 0.0.1899.20250103-1 [352 kB]
139s Get:27 http://ftpmaster.internal/ubuntu plucky/universe amd64 libavif16 amd64 1.1.1-1ubuntu1 [113 kB]
139s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libsnappy1v5 amd64 1.2.1-1 [30.4 kB]
139s Get:29 http://ftpmaster.internal/ubuntu plucky/universe amd64 libblosc1 amd64 1.21.5+ds-1build1 [36.2 kB]
139s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB]
139s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB]
139s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B]
139s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB]
139s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB]
139s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcfitsio10t64 amd64 4.5.0-5 [629 kB]
139s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB]
139s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libde265-0 amd64 1.0.15-1build4 [168 kB]
139s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.22-1 [64.5 kB]
139s Get:39 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfyba0t64 amd64 4.1.1-11build1 [119 kB]
139s Get:40 http://ftpmaster.internal/ubuntu plucky/universe amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [22.9 kB]
139s Get:41 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfreexl1 amd64 2.0.0-1build2 [41.7 kB]
139s Get:42 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeos3.13.0 amd64 3.13.0-1 [1017 kB]
139s Get:43 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeos-c1t64 amd64 3.13.0-1 [103 kB]
139s Get:44 http://ftpmaster.internal/ubuntu plucky/universe amd64 proj-data all 9.5.1-1 [7924 kB]
139s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB]
139s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB]
139s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB]
139s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.4.0-0.1 [231 kB]
139s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB]
139s Get:50 http://ftpmaster.internal/ubuntu plucky/universe amd64 libproj25 amd64 9.5.1-1 [1499 kB]
139s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeotiff5 amd64 1.7.3-1 [63.0 kB]
139s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libgif7 amd64 5.2.2-1ubuntu1 [35.2 kB]
139s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B]
139s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf4-0-alt amd64 4.3.0-1 [285 kB]
139s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-5ubuntu1 [1367 kB]
139s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-aomdec amd64 1.19.3-1 [11.5 kB]
139s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-libde265 amd64 1.19.3-1 [8968 B]
139s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif1 amd64 1.19.3-1 [415 kB]
139s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 liburiparser1 amd64 0.9.8+dfsg-2 [46.8 kB]
139s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmlbase1t64 amd64 1.3.0-12build1 [49.9 kB]
139s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmldom1t64 amd64 1.3.0-12build1 [156 kB]
139s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmlengine1t64 amd64 1.3.0-12build1 [71.4 kB]
139s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 mysql-common all 5.8+1.1.1 [6800 B]
139s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libmysqlclient24 amd64 8.4.3-0ubuntu1 [1255 kB]
139s Get:65 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-5ubuntu1 [59.5 kB]
139s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf19t64 amd64 1:4.9.2-6ubuntu1 [472 kB]
139s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libltdl7 amd64 2.4.7-8 [43.9 kB]
139s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libodbc2 amd64 2.3.12-1ubuntu1 [158 kB]
139s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 unixodbc-common all 2.3.12-1ubuntu1 [8796 B]
139s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libodbcinst2 amd64 2.3.12-1ubuntu1 [30.7 kB]
139s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libogdi4.1 amd64 4.1.1+ds-5 [219 kB]
139s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu2 [217 kB]
139s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgmepp6t64 amd64 1.24.1-2ubuntu1 [126 kB]
139s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB]
139s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libpoppler140 amd64 24.08.0-3 [1262 kB]
139s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libpq5 amd64 17.2-1 [153 kB]
139s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB]
139s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 librttopo1 amd64 1.1.0-3build2 [191 kB]
139s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libspatialite8t64 amd64 5.1.0-3build1 [1919 kB]
139s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3 [917 kB]
139s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgdal36 amd64 3.10.0+dfsg-1 [10.2 MB]
140s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-12ubuntu1 [148 kB]
140s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB]
140s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.1.0-1 [541 kB]
140s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
140s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB]
140s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
140s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
140s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
140s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB]
140s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
140s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
140s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
140s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
140s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
140s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
140s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
140s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
140s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
140s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
140s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB]
140s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB]
140s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB]
140s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.55.0+ds-3 [255 kB]
140s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.55.0+ds-3 [51.9 kB]
140s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.55.0+ds-3 [29.1 kB]
140s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB]
140s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB]
140s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB]
140s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1085 kB]
140s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB]
140s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B]
140s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.15-1 [862 kB]
140s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 libudunits2-data all 2.2.28-7build1 [19.4 kB]
140s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 libudunits2-0 amd64 2.2.28-7build1 [54.1 kB]
140s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB]
141s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu1 [185 kB]
141s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB]
141s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-0ubuntu1 [67.5 kB]
141s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.2-1 [28.9 MB]
142s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB]
142s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B]
142s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB]
142s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
142s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB]
142s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB]
142s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB]
143s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB]
143s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB]
143s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bdsmatrix amd64 1.3-7-1 [299 kB]
143s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.4-1 [1708 kB]
143s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB]
143s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB]
143s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB]
143s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB]
143s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
143s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.8.9+dfsg-1 [445 kB]
143s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.3-1 [1348 kB]
143s Get:139 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB]
143s Get:140 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
143s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB]
143s Get:142 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB]
143s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.4+dfsg-1 [245 kB]
143s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB]
143s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB]
143s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB]
143s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.7.0+dfsg-1 [4255 kB]
143s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-63-1 [1114 kB]
143s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB]
143s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB]
143s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-e1071 amd64 1.7-16-1 [565 kB]
143s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernsmooth amd64 2.23-26-1 [94.5 kB]
143s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-classint amd64 0.4-10+dfsg-1 [106 kB]
143s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
143s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.13-1-1 [1993 kB]
143s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-collapse amd64 2.0.16-1 [3351 kB]
143s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB]
143s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB]
143s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB]
143s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.0-1 [111 kB]
143s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB]
143s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB]
143s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-foreign amd64 0.8.87-1 [245 kB]
143s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formula all 1.2-5-1 [158 kB]
143s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB]
143s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB]
143s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sp amd64 1:2.1-4+dfsg-1 [1472 kB]
143s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-zoo amd64 1.8-12-2 [984 kB]
144s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
144s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-wk amd64 0.9.4-1 [1791 kB]
144s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-s2 amd64 1.1.7-1 [2023 kB]
144s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-units amd64 0.8-5+dfsg-1 [275 kB]
144s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sf amd64 1.0-17+dfsg-1build1 [3297 kB]
144s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sftime all 0.2-0-6 [168 kB]
144s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xts amd64 0.14.0-1 [760 kB]
144s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-intervals amd64 0.15.5-1 [602 kB]
144s Get:177 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-spacetime all 1.3-2-1 [2776 kB]
144s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stars all 0.6-6-1 [4105 kB]
144s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gstat amd64 2.1-2-1 [2335 kB]
144s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.49+dfsg-1 [545 kB]
144s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB]
144s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB]
144s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.0+dfsg-1 [287 kB]
144s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB]
144s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isocodes all 2024.02.12-1 [312 kB]
144s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB]
144s Get:187 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
144s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB]
144s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lmtest amd64 0.9.40-1 [396 kB]
145s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-maps amd64 3.4.2-1 [2359 kB]
145s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mapdata amd64 2.3.1-1 [23.5 MB]
145s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-markdown all 1.12+dfsg-2 [179 kB]
145s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-misctools all 0.6-28-1 [99.9 kB]
145s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sandwich all 3.1-1-1 [1483 kB]
146s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-maxlik all 1.5-2.1-1 [1083 kB]
146s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.166-1 [2314 kB]
146s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rbibutils amd64 2.3-1 [1023 kB]
146s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rdpack all 2.6.2-1 [757 kB]
146s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plm all 2.6-4-1 [2161 kB]
146s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-terra amd64 1.7-78-1build1 [3955 kB]
146s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-raster amd64 3.6-30-1 [3145 kB]
146s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
146s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.53-1 [145 kB]
146s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB]
146s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB]
147s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB]
147s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
147s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
147s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.9.1+dfsg-1 [3111 kB]
147s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.28+dfsg-1 [1501 kB]
147s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rpostgresql amd64 0.7-7+dfsg-1 [365 kB]
147s Preconfiguring packages ...
147s Fetched 216 MB in 9s (23.2 MB/s)
147s Selecting previously unselected package fonts-dejavu-mono.
148s (Reading database ... 
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(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
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(Reading database ... 75820 files and directories currently installed.)
148s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8_all.deb ...
148s Unpacking fonts-dejavu-mono (2.37-8) ...
148s Selecting previously unselected package fonts-dejavu-core.
148s Preparing to unpack .../001-fonts-dejavu-core_2.37-8_all.deb ...
148s Unpacking fonts-dejavu-core (2.37-8) ...
148s Selecting previously unselected package fontconfig-config.
148s Preparing to unpack .../002-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ...
148s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ...
148s Selecting previously unselected package libfontconfig1:amd64.
148s Preparing to unpack .../003-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ...
148s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ...
148s Selecting previously unselected package fontconfig.
148s Preparing to unpack .../004-fontconfig_2.15.0-1.1ubuntu2_amd64.deb ...
148s Unpacking fontconfig (2.15.0-1.1ubuntu2) ...
148s Selecting previously unselected package fonts-font-awesome.
148s Preparing to unpack .../005-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
148s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
148s Selecting previously unselected package fonts-glyphicons-halflings.
148s Preparing to unpack .../006-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
148s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
148s Selecting previously unselected package fonts-mathjax.
148s Preparing to unpack .../007-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
148s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
148s Selecting previously unselected package gdal-data.
148s Preparing to unpack .../008-gdal-data_3.10.0+dfsg-1_all.deb ...
148s Unpacking gdal-data (3.10.0+dfsg-1) ...
148s Selecting previously unselected package gdal-plugins:amd64.
148s Preparing to unpack .../009-gdal-plugins_3.10.0+dfsg-1_amd64.deb ...
148s Unpacking gdal-plugins:amd64 (3.10.0+dfsg-1) ...
148s Selecting previously unselected package javascript-common.
148s Preparing to unpack .../010-javascript-common_11+nmu1_all.deb ...
148s Unpacking javascript-common (11+nmu1) ...
148s Selecting previously unselected package libabsl20230802:amd64.
148s Preparing to unpack .../011-libabsl20230802_20230802.1-4ubuntu2_amd64.deb ...
148s Unpacking libabsl20230802:amd64 (20230802.1-4ubuntu2) ...
148s Selecting previously unselected package libaec0:amd64.
148s Preparing to unpack .../012-libaec0_1.1.3-1_amd64.deb ...
148s Unpacking libaec0:amd64 (1.1.3-1) ...
148s Selecting previously unselected package libaom3:amd64.
148s Preparing to unpack .../013-libaom3_3.11.0-1_amd64.deb ...
148s Unpacking libaom3:amd64 (3.11.0-1) ...
148s Selecting previously unselected package libblas3:amd64.
148s Preparing to unpack .../014-libblas3_3.12.0-4_amd64.deb ...
148s Unpacking libblas3:amd64 (3.12.0-4) ...
148s Selecting previously unselected package libgfortran5:amd64.
148s Preparing to unpack .../015-libgfortran5_14.2.0-12ubuntu1_amd64.deb ...
148s Unpacking libgfortran5:amd64 (14.2.0-12ubuntu1) ...
148s Selecting previously unselected package liblapack3:amd64.
148s Preparing to unpack .../016-liblapack3_3.12.0-4_amd64.deb ...
148s Unpacking liblapack3:amd64 (3.12.0-4) ...
148s Selecting previously unselected package libarpack2t64:amd64.
148s Preparing to unpack .../017-libarpack2t64_3.9.1-4_amd64.deb ...
148s Unpacking libarpack2t64:amd64 (3.9.1-4) ...
148s Selecting previously unselected package libarmadillo14.
148s Preparing to unpack .../018-libarmadillo14_1%3a14.2.1+dfsg-1_amd64.deb ...
148s Unpacking libarmadillo14 (1:14.2.1+dfsg-1) ...
148s Selecting previously unselected package libdav1d7:amd64.
148s Preparing to unpack .../019-libdav1d7_1.5.0-1_amd64.deb ...
148s Unpacking libdav1d7:amd64 (1.5.0-1) ...
148s Selecting previously unselected package libgav1-1:amd64.
149s Preparing to unpack .../020-libgav1-1_0.19.0-3_amd64.deb ...
149s Unpacking libgav1-1:amd64 (0.19.0-3) ...
149s Selecting previously unselected package librav1e0.7:amd64.
149s Preparing to unpack .../021-librav1e0.7_0.7.1-9_amd64.deb ...
149s Unpacking librav1e0.7:amd64 (0.7.1-9) ...
149s Selecting previously unselected package libsvtav1enc2:amd64.
149s Preparing to unpack .../022-libsvtav1enc2_2.3.0+dfsg-1_amd64.deb ...
149s Unpacking libsvtav1enc2:amd64 (2.3.0+dfsg-1) ...
149s Selecting previously unselected package libjpeg-turbo8:amd64.
149s Preparing to unpack .../023-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ...
149s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ...
149s Selecting previously unselected package libjpeg8:amd64.
149s Preparing to unpack .../024-libjpeg8_8c-2ubuntu11_amd64.deb ...
149s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ...
149s Selecting previously unselected package libyuv0:amd64.
149s Preparing to unpack .../025-libyuv0_0.0.1899.20250103-1_amd64.deb ...
149s Unpacking libyuv0:amd64 (0.0.1899.20250103-1) ...
149s Selecting previously unselected package libavif16:amd64.
149s Preparing to unpack .../026-libavif16_1.1.1-1ubuntu1_amd64.deb ...
149s Unpacking libavif16:amd64 (1.1.1-1ubuntu1) ...
149s Selecting previously unselected package libsnappy1v5:amd64.
149s Preparing to unpack .../027-libsnappy1v5_1.2.1-1_amd64.deb ...
149s Unpacking libsnappy1v5:amd64 (1.2.1-1) ...
149s Selecting previously unselected package libblosc1:amd64.
149s Preparing to unpack .../028-libblosc1_1.21.5+ds-1build1_amd64.deb ...
149s Unpacking libblosc1:amd64 (1.21.5+ds-1build1) ...
149s Selecting previously unselected package libpixman-1-0:amd64.
149s Preparing to unpack .../029-libpixman-1-0_0.44.0-3_amd64.deb ...
149s Unpacking libpixman-1-0:amd64 (0.44.0-3) ...
149s Selecting previously unselected package libxcb-render0:amd64.
149s Preparing to unpack .../030-libxcb-render0_1.17.0-2_amd64.deb ...
149s Unpacking libxcb-render0:amd64 (1.17.0-2) ...
149s Selecting previously unselected package libxcb-shm0:amd64.
149s Preparing to unpack .../031-libxcb-shm0_1.17.0-2_amd64.deb ...
149s Unpacking libxcb-shm0:amd64 (1.17.0-2) ...
149s Selecting previously unselected package libxrender1:amd64.
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157s Setting up libodbcinst2:amd64 (2.3.12-1ubuntu1) ...
157s Setting up liblapack3:amd64 (3.12.0-4) ...
157s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
157s Setting up libudunits2-0 (2.2.28-7build1) ...
157s Setting up libarpack2t64:amd64 (3.9.1-4) ...
157s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ...
157s Setting up libgeos-c1t64:amd64 (3.13.0-1) ...
157s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
157s Setting up libpaper-utils (2.2.5-0.3) ...
157s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ...
157s Setting up libkmldom1t64:amd64 (1.3.0-12build1) ...
157s Setting up libthai0:amd64 (0.1.29-2build1) ...
157s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
157s Setting up pandoc (3.1.11.1+ds-2) ...
157s Setting up libgav1-1:amd64 (0.19.0-3) ...
157s Setting up libhdf4-0-alt:amd64 (4.3.0-1) ...
157s Setting up librttopo1:amd64 (1.1.0-3build2) ...
157s Setting up libfreexl1:amd64 (2.0.0-1build2) ...
157s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ...
157s Setting up libarmadillo14 (1:14.2.1+dfsg-1) ...
157s Setting up libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ...
157s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-5ubuntu1) ...
157s Setting up libyuv0:amd64 (0.0.1899.20250103-1) ...
157s Setting up libsm6:amd64 (2:1.2.4-1) ...
157s Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-5ubuntu1) ...
157s Setting up fontconfig (2.15.0-1.1ubuntu2) ...
159s Regenerating fonts cache... done.
159s Setting up libavif16:amd64 (1.1.1-1ubuntu1) ...
159s Setting up libnetcdf19t64:amd64 (1:4.9.2-6ubuntu1) ...
159s Setting up libxft2:amd64 (2.3.6-1build1) ...
159s Setting up libproj25:amd64 (9.5.1-1) ...
159s Setting up libtk8.6:amd64 (8.6.15-1) ...
159s Setting up libpango-1.0-0:amd64 (1.55.0+ds-3) ...
159s Setting up libkmlengine1t64:amd64 (1.3.0-12build1) ...
159s Setting up libcairo2:amd64 (1.18.2-2) ...
159s Setting up libgeotiff5:amd64 (1.7.3-1) ...
159s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ...
159s Setting up libpoppler140:amd64 (24.08.0-3) ...
159s Setting up libpangoft2-1.0-0:amd64 (1.55.0+ds-3) ...
159s Setting up libpangocairo-1.0-0:amd64 (1.55.0+ds-3) ...
159s Setting up libspatialite8t64:amd64 (5.1.0-3build1) ...
159s Setting up r-base-core (4.4.2-1) ...
160s Creating config file /etc/R/Renviron with new version
160s Setting up r-cran-crayon (1.5.2-1) ...
160s Setting up r-cran-sourcetools (0.1.7-1-1) ...
160s Setting up r-cran-lattice (0.22-6-1) ...
160s Setting up r-cran-nlme (3.1.166-1) ...
160s Setting up r-cran-formula (1.2-5-1) ...
160s Setting up r-cran-intervals (0.15.5-1) ...
160s Setting up r-cran-isocodes (2024.02.12-1) ...
160s Setting up r-cran-wk (0.9.4-1) ...
160s Setting up r-cran-commonmark (1.9.2-2) ...
160s Setting up r-cran-proxy (0.4-27-1) ...
160s Setting up r-cran-r6 (2.5.1-1) ...
160s Setting up r-cran-pkgkitten (0.2.4-1) ...
160s Setting up r-cran-magrittr (2.0.3-1) ...
160s Setting up r-cran-rappdirs (0.3.3-1) ...
160s Setting up r-cran-littler (0.3.20-2) ...
160s Setting up r-cran-fs (1.6.4+dfsg-1) ...
160s Setting up r-cran-rcpp (1.0.13-1-1) ...
160s Setting up r-cran-maps (3.4.2-1) ...
160s Setting up r-cran-rlang (1.1.4-1) ...
160s Setting up littler (0.3.20-2) ...
160s Setting up r-cran-xfun (0.49+dfsg-1) ...
160s Setting up r-cran-withr (3.0.2+dfsg-1) ...
160s Setting up r-cran-mime (0.12-2) ...
160s Setting up r-cran-generics (0.1.3-1) ...
160s Setting up r-cran-base64enc (0.1-3-3) ...
160s Setting up r-cran-abind (1.4-8-1) ...
160s Setting up r-cran-s2 (1.1.7-1) ...
160s Setting up r-cran-digest (0.6.37-1) ...
160s Setting up r-cran-yaml (2.3.10-1) ...
160s Setting up r-cran-evaluate (1.0.0-1) ...
160s Setting up r-cran-dbi (1.2.3-1) ...
160s Setting up r-cran-highr (0.11+dfsg-1) ...
160s Setting up r-cran-mass (7.3-63-1) ...
160s Setting up r-cran-mapdata (2.3.1-1) ...
160s Setting up r-cran-collapse (2.0.16-1) ...
160s Setting up r-cran-bdsmatrix (1.3-7-1) ...
160s Setting up r-cran-glue (1.8.0-1) ...
160s Setting up r-cran-foreign (0.8.87-1) ...
160s Setting up r-cran-xtable (1:1.8-4-2) ...
160s Setting up r-cran-cli (3.6.3-1) ...
160s Setting up r-cran-rbibutils (2.3-1) ...
160s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
160s Setting up r-cran-fnn (1.1.4.1-1) ...
160s Setting up r-cran-fastmap (1.2.0-1) ...
160s Setting up r-cran-jsonlite (1.8.9+dfsg-1) ...
160s Setting up r-cran-sp (1:2.1-4+dfsg-1) ...
160s Setting up r-cran-markdown (1.12+dfsg-2) ...
160s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
160s Setting up r-cran-zoo (1.8-12-2) ...
160s Setting up r-cran-units (0.8-5+dfsg-1) ...
160s Setting up r-cran-later (1.3.2+dfsg-1) ...
160s Setting up r-cran-htmltools (0.5.8.1-1) ...
160s Setting up r-cran-tinytex (0.53-1) ...
160s Setting up r-cran-kernsmooth (2.23-26-1) ...
160s Setting up r-cran-knitr (1.49+dfsg-1) ...
160s Setting up r-cran-rpostgresql (0.7-7+dfsg-1) ...
160s Setting up r-cran-cachem (1.1.0-1) ...
160s Setting up r-cran-lmtest (0.9.40-1) ...
160s Setting up r-cran-sass (0.4.9+dfsg-1) ...
160s Setting up r-cran-misctools (0.6-28-1) ...
160s Setting up r-cran-class (7.3-23-1) ...
160s Setting up r-cran-sandwich (3.1-1-1) ...
160s Setting up r-cran-fontawesome (0.5.2-1) ...
160s Setting up r-cran-xts (0.14.0-1) ...
160s Setting up r-cran-rdpack (2.6.2-1) ...
160s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
160s Setting up r-cran-memoise (2.0.1-1) ...
160s Setting up r-cran-promises (1.3.0+dfsg-1) ...
160s Setting up r-cran-e1071 (1.7-16-1) ...
160s Setting up r-cran-maxlik (1.5-2.1-1) ...
160s Setting up r-cran-spacetime (1.3-2-1) ...
160s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
160s Setting up r-cran-plm (2.6-4-1) ...
160s Setting up r-cran-classint (0.4-10+dfsg-1) ...
160s Setting up r-cran-bslib (0.7.0+dfsg-1) ...
160s Setting up r-cran-shiny (1.9.1+dfsg-1) ...
160s Setting up r-cran-rmarkdown (2.28+dfsg-1) ...
160s Setting up libheif-plugin-aomdec:amd64 (1.19.3-1) ...
160s Setting up libheif-plugin-libde265:amd64 (1.19.3-1) ...
160s Setting up libheif1:amd64 (1.19.3-1) ...
160s Setting up libgdal36:amd64 (3.10.0+dfsg-1) ...
160s Setting up r-cran-sf (1.0-17+dfsg-1build1) ...
160s Setting up r-cran-stars (0.6-6-1) ...
160s Setting up r-cran-sftime (0.2-0-6) ...
160s Setting up r-cran-gstat (2.1-2-1) ...
160s Setting up r-cran-terra (1.7-78-1build1) ...
160s Setting up r-cran-raster (3.6-30-1) ...
160s Processing triggers for install-info (7.1.1-1) ...
160s Processing triggers for libc-bin (2.40-4ubuntu1) ...
160s Processing triggers for man-db (2.13.0-1) ...
162s autopkgtest [14:43:41]: test run-unit-test: [-----------------------
162s BEGIN TEST basic.R
162s 
162s R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
162s Copyright (C) 2024 The R Foundation for Statistical Computing
162s Platform: x86_64-pc-linux-gnu
162s 
162s R is free software and comes with ABSOLUTELY NO WARRANTY.
162s You are welcome to redistribute it under certain conditions.
162s Type 'license()' or 'licence()' for distribution details.
162s 
162s R is a collaborative project with many contributors.
162s Type 'contributors()' for more information and
162s 'citation()' on how to cite R or R packages in publications.
162s 
162s Type 'demo()' for some demos, 'help()' for on-line help, or
162s 'help.start()' for an HTML browser interface to help.
162s Type 'q()' to quit R.
162s 
162s > options(digits=5)
162s > options(xts_check_TZ=FALSE)
162s > ###################################################
162s > ### chunk number 4: 
162s > ###################################################
162s > library(sp)
162s > library(spacetime)
163s > set.seed(13579) # to make outcome a bit predictable!
163s > sp = cbind(x = c(0,0,1), y = c(0,1,1))
163s > row.names(sp) = paste("point", 1:nrow(sp), sep="")
163s > sp = SpatialPoints(sp)
163s > time = as.POSIXct("2010-08-05", tz="GMT")+3600*(10:13)
163s > m = c(10,20,30) # means for each of the 3 point locations
163s > mydata = rnorm(length(sp)*length(time),mean=rep(m, 4))
163s > IDs = paste("ID", 1:length(mydata), sep = "_")
163s > mydata = data.frame(values = signif(mydata,3), ID=IDs)
163s > stfdf = STFDF(sp, time, mydata)
163s > 
163s > 
163s > ###################################################
163s > ### chunk number 5: 
163s > ###################################################
163s > format(as.data.frame(stfdf, row.names = IDs), tz="GMT")
163s       x y  sp.ID                time             endTime timeIndex values    ID
163s ID_1  0 0 point1 2010-08-05 10:00:00 2010-08-05 11:00:00         1   8.77  ID_1
163s ID_2  0 1 point2 2010-08-05 10:00:00 2010-08-05 11:00:00         1  18.70  ID_2
163s ID_3  1 1 point3 2010-08-05 10:00:00 2010-08-05 11:00:00         1  29.70  ID_3
163s ID_4  0 0 point1 2010-08-05 11:00:00 2010-08-05 12:00:00         2   8.47  ID_4
163s ID_5  0 1 point2 2010-08-05 11:00:00 2010-08-05 12:00:00         2  21.10  ID_5
163s ID_6  1 1 point3 2010-08-05 11:00:00 2010-08-05 12:00:00         2  32.50  ID_6
163s ID_7  0 0 point1 2010-08-05 12:00:00 2010-08-05 13:00:00         3  10.80  ID_7
163s ID_8  0 1 point2 2010-08-05 12:00:00 2010-08-05 13:00:00         3  20.20  ID_8
163s ID_9  1 1 point3 2010-08-05 12:00:00 2010-08-05 13:00:00         3  29.00  ID_9
163s ID_10 0 0 point1 2010-08-05 13:00:00 2010-08-05 14:00:00         4   9.74 ID_10
163s ID_11 0 1 point2 2010-08-05 13:00:00 2010-08-05 14:00:00         4  20.70 ID_11
163s ID_12 1 1 point3 2010-08-05 13:00:00 2010-08-05 14:00:00         4  30.50 ID_12
163s > format(as(stfdf, "data.frame")[1:4,], tz="GMT")
163s   x y  sp.ID                time             endTime timeIndex values   ID
163s 1 0 0 point1 2010-08-05 10:00:00 2010-08-05 11:00:00         1   8.77 ID_1
163s 2 0 1 point2 2010-08-05 10:00:00 2010-08-05 11:00:00         1  18.70 ID_2
163s 3 1 1 point3 2010-08-05 10:00:00 2010-08-05 11:00:00         1  29.70 ID_3
163s 4 0 0 point1 2010-08-05 11:00:00 2010-08-05 12:00:00         2   8.47 ID_4
163s > 
163s > ###################################################
163s > ### chunk number 6: 
163s > ###################################################
163s > unstack(stfdf)
163s                     point1 point2 point3
163s 2010-08-05 10:00:00   8.77   18.7   29.7
163s 2010-08-05 11:00:00   8.47   21.1   32.5
163s 2010-08-05 12:00:00  10.80   20.2   29.0
163s 2010-08-05 13:00:00   9.74   20.7   30.5
163s > t(unstack(stfdf))
163s        2010-08-05 10:00:00 2010-08-05 11:00:00 2010-08-05 12:00:00
163s point1                8.77                8.47                10.8
163s point2               18.70               21.10                20.2
163s point3               29.70               32.50                29.0
163s        2010-08-05 13:00:00
163s point1                9.74
163s point2               20.70
163s point3               30.50
163s > unstack(stfdf, which = 2)
163s                     point1 point2 point3
163s 2010-08-05 10:00:00   ID_1   ID_2   ID_3
163s 2010-08-05 11:00:00   ID_4   ID_5   ID_6
163s 2010-08-05 12:00:00   ID_7   ID_8   ID_9
163s 2010-08-05 13:00:00  ID_10  ID_11  ID_12
163s > 
163s > ###################################################
163s > ### chunk number 7: 
163s > ###################################################
163s > as(stfdf[,,1], "xts")
163s                     point1 point2 point3
163s 2010-08-05 10:00:00   8.77   18.7   29.7
163s 2010-08-05 11:00:00   8.47   21.1   32.5
163s 2010-08-05 12:00:00  10.80   20.2   29.0
163s 2010-08-05 13:00:00   9.74   20.7   30.5
163s > as(stfdf[,,2], "xts")
163s                     point1 point2 point3
163s 2010-08-05 10:00:00   ID_1   ID_2   ID_3
163s 2010-08-05 11:00:00   ID_4   ID_5   ID_6
163s 2010-08-05 12:00:00   ID_7   ID_8   ID_9
163s 2010-08-05 13:00:00  ID_10  ID_11  ID_12
163s > 
163s > ###################################################
163s > ### chunk number 8: 
163s > ###################################################
163s > stfdf[[1]]
163s  [1]  8.77 18.70 29.70  8.47 21.10 32.50 10.80 20.20 29.00  9.74 20.70 30.50
163s > stfdf[["values"]]
163s  [1]  8.77 18.70 29.70  8.47 21.10 32.50 10.80 20.20 29.00  9.74 20.70 30.50
163s > stfdf[["newVal"]] <- rnorm(12)
163s > stfdf$ID
163s  [1] "ID_1"  "ID_2"  "ID_3"  "ID_4"  "ID_5"  "ID_6"  "ID_7"  "ID_8"  "ID_9" 
163s [10] "ID_10" "ID_11" "ID_12"
163s > stfdf$ID = paste("OldIDs", 1:12, sep="")
163s > stfdf$NewID = paste("NewIDs", 12:1, sep="")
163s > stfdf
163s An object of class "STFDF"
163s Slot "data":
163s    values       ID    newVal    NewID
163s 1    8.77  OldIDs1 -0.766670 NewIDs12
163s 2   18.70  OldIDs2 -0.437290 NewIDs11
163s 3   29.70  OldIDs3 -0.471551 NewIDs10
163s 4    8.47  OldIDs4 -0.561384  NewIDs9
163s 5   21.10  OldIDs5 -1.215165  NewIDs8
163s 6   32.50  OldIDs6  0.246818  NewIDs7
163s 7   10.80  OldIDs7 -0.861698  NewIDs6
163s 8   20.20  OldIDs8  0.659911  NewIDs5
163s 9   29.00  OldIDs9 -0.036842  NewIDs4
163s 10   9.74 OldIDs10 -0.952524  NewIDs3
163s 11  20.70 OldIDs11 -1.699710  NewIDs2
163s 12  30.50 OldIDs12  0.899851  NewIDs1
163s 
163s Slot "sp":
163s SpatialPoints:
163s        x y
163s point1 0 0
163s point2 0 1
163s point3 1 1
163s Coordinate Reference System (CRS) arguments: NA 
163s 
163s Slot "time":
163s                     timeIndex
163s 2010-08-05 10:00:00         1
163s 2010-08-05 11:00:00         2
163s 2010-08-05 12:00:00         3
163s 2010-08-05 13:00:00         4
163s 
163s Slot "endTime":
163s [1] "2010-08-05 11:00:00 GMT" "2010-08-05 12:00:00 GMT"
163s [3] "2010-08-05 13:00:00 GMT" "2010-08-05 14:00:00 GMT"
163s 
163s > 
163s > 
163s > ###################################################
163s > ### chunk number 9: 
163s > ###################################################
163s > stfdf[,1] # SpatialPointsDataFrame:
163s   coordinates values      ID   newVal    NewID
163s 1      (0, 0)   8.77 OldIDs1 -0.76667 NewIDs12
163s 2      (0, 1)  18.70 OldIDs2 -0.43729 NewIDs11
163s 3      (1, 1)  29.70 OldIDs3 -0.47155 NewIDs10
163s > stfdf[,,1]
163s An object of class "STFDF"
163s Slot "data":
163s    values
163s 1    8.77
163s 2   18.70
163s 3   29.70
163s 4    8.47
163s 5   21.10
163s 6   32.50
163s 7   10.80
163s 8   20.20
163s 9   29.00
163s 10   9.74
163s 11  20.70
163s 12  30.50
163s 
163s Slot "sp":
163s SpatialPoints:
163s        x y
163s point1 0 0
163s point2 0 1
163s point3 1 1
163s Coordinate Reference System (CRS) arguments: NA 
163s 
163s Slot "time":
163s                     timeIndex
163s 2010-08-05 10:00:00         1
163s 2010-08-05 11:00:00         2
163s 2010-08-05 12:00:00         3
163s 2010-08-05 13:00:00         4
163s 
163s Slot "endTime":
163s [1] "2010-08-05 11:00:00 GMT" "2010-08-05 12:00:00 GMT"
163s [3] "2010-08-05 13:00:00 GMT" "2010-08-05 14:00:00 GMT"
163s 
163s > stfdf[1,,1] # xts
163s                     values timeIndex
163s 2010-08-05 10:00:00   8.77         1
163s 2010-08-05 11:00:00   8.47         2
163s 2010-08-05 12:00:00  10.80         3
163s 2010-08-05 13:00:00   9.74         4
163s > stfdf[,,"ID"]
163s An object of class "STFDF"
163s Slot "data":
163s          ID
163s 1   OldIDs1
163s 2   OldIDs2
163s 3   OldIDs3
163s 4   OldIDs4
163s 5   OldIDs5
163s 6   OldIDs6
163s 7   OldIDs7
163s 8   OldIDs8
163s 9   OldIDs9
163s 10 OldIDs10
163s 11 OldIDs11
163s 12 OldIDs12
163s 
163s Slot "sp":
163s SpatialPoints:
163s        x y
163s point1 0 0
163s point2 0 1
163s point3 1 1
163s Coordinate Reference System (CRS) arguments: NA 
163s 
163s Slot "time":
163s                     timeIndex
163s 2010-08-05 10:00:00         1
163s 2010-08-05 11:00:00         2
163s 2010-08-05 12:00:00         3
163s 2010-08-05 13:00:00         4
163s 
163s Slot "endTime":
163s [1] "2010-08-05 11:00:00 GMT" "2010-08-05 12:00:00 GMT"
163s [3] "2010-08-05 13:00:00 GMT" "2010-08-05 14:00:00 GMT"
163s 
163s > stfdf[1,,"values", drop=FALSE] # stays STFDF:
163s An object of class "STFDF"
163s Slot "data":
163s   values
163s 1   8.77
163s 2   8.47
163s 3  10.80
163s 4   9.74
163s 
163s Slot "sp":
163s SpatialPoints:
163s        x y
163s point1 0 0
163s Coordinate Reference System (CRS) arguments: NA 
163s 
163s Slot "time":
163s                     timeIndex
163s 2010-08-05 10:00:00         1
163s 2010-08-05 11:00:00         2
163s 2010-08-05 12:00:00         3
163s 2010-08-05 13:00:00         4
163s 
163s Slot "endTime":
163s [1] "2010-08-05 11:00:00 GMT" "2010-08-05 12:00:00 GMT"
163s [3] "2010-08-05 13:00:00 GMT" "2010-08-05 14:00:00 GMT"
163s 
163s > stfdf[,1, drop=FALSE] #stays STFDF
163s An object of class "STFDF"
163s Slot "data":
163s   values      ID   newVal    NewID
163s 1   8.77 OldIDs1 -0.76667 NewIDs12
163s 2  18.70 OldIDs2 -0.43729 NewIDs11
163s 3  29.70 OldIDs3 -0.47155 NewIDs10
163s 
163s Slot "sp":
163s SpatialPoints:
163s        x y
163s point1 0 0
163s point2 0 1
163s point3 1 1
163s Coordinate Reference System (CRS) arguments: NA 
163s 
163s Slot "time":
163s                     timeIndex
163s 2010-08-05 10:00:00         1
163s 
163s Slot "endTime":
163s [1] "2010-08-05 11:00:00 GMT"
163s 
163s > 
163s > ###################################################
163s > ### chunk number 10: 
163s > ###################################################
163s > showClass("STSDF")
163s Class "STSDF" [package "spacetime"]
163s 
163s Slots:
163s                                                              
163s Name:        data      index         sp       time    endTime
163s Class: data.frame     matrix    Spatial        xts    POSIXct
163s 
163s Extends: 
163s Class "STS", directly
163s Class "ST", by class "STS", distance 2
163s > 
163s > ###################################################
163s > ### chunk number 11: 
163s > ###################################################
163s > showClass("STIDF")
163s Class "STIDF" [package "spacetime"]
163s 
163s Slots:
163s                                                   
163s Name:        data         sp       time    endTime
163s Class: data.frame    Spatial        xts    POSIXct
163s 
163s Extends: 
163s Class "STI", directly
163s Class "ST", by class "STI", distance 2
163s > sp = expand.grid(x = 1:3, y = 1:3)
163s > row.names(sp) = paste("point", 1:nrow(sp), sep="")
163s > sp = SpatialPoints(sp)
163s > time = as.POSIXct("2010-08-05", tz="GMT")+3600*(11:19)
163s > m = 1:9 * 10 # means for each of the 9 point locations
163s > mydata = rnorm(length(sp), mean=m)
163s > IDs = paste("ID",1:length(mydata))
163s > mydata = data.frame(values = signif(mydata,3),ID=IDs)
163s > stidf = STIDF(sp, time, mydata)
163s > stidf
163s An object of class "STIDF"
163s Slot "data":
163s   values   ID
163s 1   10.7 ID 1
163s 2   19.8 ID 2
163s 3   29.2 ID 3
163s 4   41.8 ID 4
163s 5   50.2 ID 5
163s 6   59.9 ID 6
163s 7   70.9 ID 7
163s 8   80.0 ID 8
163s 9   90.2 ID 9
163s 
163s Slot "sp":
163s SpatialPoints:
163s        x y
163s point1 1 1
163s point2 2 1
163s point3 3 1
163s point4 1 2
163s point5 2 2
163s point6 3 2
163s point7 1 3
163s point8 2 3
163s point9 3 3
163s Coordinate Reference System (CRS) arguments: NA 
163s 
163s Slot "time":
163s                     timeIndex
163s 2010-08-05 11:00:00         1
163s 2010-08-05 12:00:00         2
163s 2010-08-05 13:00:00         3
163s 2010-08-05 14:00:00         4
163s 2010-08-05 15:00:00         5
163s 2010-08-05 16:00:00         6
163s 2010-08-05 17:00:00         7
163s 2010-08-05 18:00:00         8
163s 2010-08-05 19:00:00         9
163s 
163s Slot "endTime":
163s [1] "2010-08-05 11:00:00 GMT" "2010-08-05 12:00:00 GMT"
163s [3] "2010-08-05 13:00:00 GMT" "2010-08-05 14:00:00 GMT"
163s [5] "2010-08-05 15:00:00 GMT" "2010-08-05 16:00:00 GMT"
163s [7] "2010-08-05 17:00:00 GMT" "2010-08-05 18:00:00 GMT"
163s [9] "2010-08-05 19:00:00 GMT"
163s 
163s > 
163s > 
163s > ###################################################
163s > ### chunk number 12: 
163s > ###################################################
163s > stidf[1:2,]
163s An object of class "STIDF"
163s Slot "data":
163s   values   ID
163s 1   10.7 ID 1
163s 2   19.8 ID 2
163s 
163s Slot "sp":
163s SpatialPoints:
163s        x y
163s point1 1 1
163s point2 2 1
163s Coordinate Reference System (CRS) arguments: NA 
163s 
163s Slot "time":
163s                     timeIndex
163s 2010-08-05 11:00:00         1
163s 2010-08-05 12:00:00         2
163s 
163s Slot "endTime":
163s [1] "2010-08-05 11:00:00 GMT" "2010-08-05 12:00:00 GMT"
163s 
163s > 
163s > 
163s > ###################################################
163s > ### chunk number 13: 
163s > ###################################################
163s > stfdf[,time[3]]
163s   coordinates values       ID   newVal   NewID
163s 1      (0, 0)   9.74 OldIDs10 -0.95252 NewIDs3
163s 2      (0, 1)  20.70 OldIDs11 -1.69971 NewIDs2
163s 3      (1, 1)  30.50 OldIDs12  0.89985 NewIDs1
163s > 
163s > 
163s > ###################################################
163s > ### chunk number 14: 
163s > ###################################################
163s > class(stfdf[,time[3],drop=FALSE])
163s [1] "STFDF"
163s attr(,"package")
163s [1] "spacetime"
163s > 
163s > ###################################################
163s > ### chunk number 15: 
163s > ###################################################
163s > stfdf[1, , "values"]
163s                     values timeIndex
163s 2010-08-05 10:00:00   8.77         1
163s 2010-08-05 11:00:00   8.47         2
163s 2010-08-05 12:00:00  10.80         3
163s 2010-08-05 13:00:00   9.74         4
163s > 
163s > ###################################################
163s > ### chunk number 16: 
163s > ###################################################
163s > class(stfdf[1,drop=FALSE])
163s [1] "STFDF"
163s attr(,"package")
163s [1] "spacetime"
163s > 
163s > 
163s > ###################################################
163s > ### chunk number 17: 
163s > ###################################################
163s > class(stfdf)
163s [1] "STFDF"
163s attr(,"package")
163s [1] "spacetime"
163s > class(as(stfdf, "STSDF"))
163s [1] "STSDF"
163s attr(,"package")
163s [1] "spacetime"
163s > class(as(as(stfdf, "STSDF"), "STIDF"))
163s [1] "STIDF"
163s attr(,"package")
163s [1] "spacetime"
163s > class(as(stfdf, "STIDF"))
163s [1] "STIDF"
163s attr(,"package")
163s [1] "spacetime"
163s > 
163s > 
163s > ###################################################
163s > ### chunk number 18: 
163s > ###################################################
163s > x = as(stfdf, "STIDF")
163s > class(as(x, "STSDF"))
163s [1] "STSDF"
163s attr(,"package")
163s [1] "spacetime"
163s > class(as(as(x, "STSDF"), "STFDF"))
163s [1] "STFDF"
163s attr(,"package")
163s [1] "spacetime"
163s > class(as(x, "STFDF"))
163s [1] "STFDF"
163s attr(,"package")
163s [1] "spacetime"
163s > xx = as(x, "STFDF")
163s > identical(stfdf, xx)
163s [1] TRUE
163s > 
163s > stsdf = as(stfdf, "STSDF")
163s > stsdf[[1]]
163s  [1]  8.77 18.70 29.70  8.47 21.10 32.50 10.80 20.20 29.00  9.74 20.70 30.50
163s > stsdf[["values"]]
163s  [1]  8.77 18.70 29.70  8.47 21.10 32.50 10.80 20.20 29.00  9.74 20.70 30.50
163s > stsdf[["newVal"]] <- rnorm(12)
163s > stsdf$ID
163s  [1] "OldIDs1"  "OldIDs2"  "OldIDs3"  "OldIDs4"  "OldIDs5"  "OldIDs6" 
163s  [7] "OldIDs7"  "OldIDs8"  "OldIDs9"  "OldIDs10" "OldIDs11" "OldIDs12"
163s > stsdf$ID = paste("OldIDs", 1:12, sep="")
163s > stsdf$NewID = paste("NewIDs", 12:1, sep="")
163s > stsdf
163s An object of class "STSDF"
163s Slot "data":
163s    values       ID   newVal    NewID
163s 1    8.77  OldIDs1 -1.24345 NewIDs12
163s 2   18.70  OldIDs2 -1.47698 NewIDs11
163s 3   29.70  OldIDs3 -0.84284 NewIDs10
163s 4    8.47  OldIDs4  1.54992  NewIDs9
163s 5   21.10  OldIDs5  1.04955  NewIDs8
163s 6   32.50  OldIDs6  1.35744  NewIDs7
163s 7   10.80  OldIDs7  1.33925  NewIDs6
163s 8   20.20  OldIDs8  0.77757  NewIDs5
163s 9   29.00  OldIDs9  0.39454  NewIDs4
163s 10   9.74 OldIDs10  0.15138  NewIDs3
163s 11  20.70 OldIDs11 -0.38780  NewIDs2
163s 12  30.50 OldIDs12  0.46815  NewIDs1
163s 
163s Slot "index":
163s       [,1] [,2]
163s  [1,]    1    1
163s  [2,]    2    1
163s  [3,]    3    1
163s  [4,]    1    2
163s  [5,]    2    2
163s  [6,]    3    2
163s  [7,]    1    3
163s  [8,]    2    3
163s  [9,]    3    3
163s [10,]    1    4
163s [11,]    2    4
163s [12,]    3    4
163s 
163s Slot "sp":
163s SpatialPoints:
163s        x y
163s point1 0 0
163s point2 0 1
163s point3 1 1
163s Coordinate Reference System (CRS) arguments: NA 
163s 
163s Slot "time":
163s                     timeIndex
163s 2010-08-05 10:00:00         1
163s 2010-08-05 11:00:00         2
163s 2010-08-05 12:00:00         3
163s 2010-08-05 13:00:00         4
163s 
163s Slot "endTime":
163s [1] "2010-08-05 11:00:00 GMT" "2010-08-05 12:00:00 GMT"
163s [3] "2010-08-05 13:00:00 GMT" "2010-08-05 14:00:00 GMT"
163s 
163s > stsdf[,1] # SpatialPointsDataFrame:
163s   coordinates values      ID   newVal    NewID
163s 1      (0, 0)   8.77 OldIDs1 -1.24345 NewIDs12
163s 2      (0, 1)  18.70 OldIDs2 -1.47698 NewIDs11
163s 3      (1, 1)  29.70 OldIDs3 -0.84284 NewIDs10
163s > stsdf[,,1]
163s An object of class "STSDF"
163s Slot "data":
163s    values
163s 1    8.77
163s 2   18.70
163s 3   29.70
163s 4    8.47
163s 5   21.10
163s 6   32.50
163s 7   10.80
163s 8   20.20
163s 9   29.00
163s 10   9.74
163s 11  20.70
163s 12  30.50
163s 
163s Slot "index":
163s       [,1] [,2]
163s  [1,]    1    1
163s  [2,]    2    1
163s  [3,]    3    1
163s  [4,]    1    2
163s  [5,]    2    2
163s  [6,]    3    2
163s  [7,]    1    3
163s  [8,]    2    3
163s  [9,]    3    3
163s [10,]    1    4
163s [11,]    2    4
163s [12,]    3    4
163s 
163s Slot "sp":
163s SpatialPoints:
163s        x y
163s point1 0 0
163s point2 0 1
163s point3 1 1
163s Coordinate Reference System (CRS) arguments: NA 
163s 
163s Slot "time":
163s                     timeIndex
163s 2010-08-05 10:00:00         1
163s 2010-08-05 11:00:00         2
163s 2010-08-05 12:00:00         3
163s 2010-08-05 13:00:00         4
163s 
163s Slot "endTime":
163s [1] "2010-08-05 11:00:00 GMT" "2010-08-05 12:00:00 GMT"
163s [3] "2010-08-05 13:00:00 GMT" "2010-08-05 14:00:00 GMT"
163s 
163s > stsdf[1,,1] # xts
163s                     values timeIndex
163s 2010-08-05 10:00:00   8.77         1
163s 2010-08-05 11:00:00   8.47         2
163s 2010-08-05 12:00:00  10.80         3
163s 2010-08-05 13:00:00   9.74         4
163s > stsdf[,,"ID"]
163s An object of class "STSDF"
163s Slot "data":
163s          ID
163s 1   OldIDs1
163s 2   OldIDs2
163s 3   OldIDs3
163s 4   OldIDs4
163s 5   OldIDs5
163s 6   OldIDs6
163s 7   OldIDs7
163s 8   OldIDs8
163s 9   OldIDs9
163s 10 OldIDs10
163s 11 OldIDs11
163s 12 OldIDs12
163s 
163s Slot "index":
163s       [,1] [,2]
163s  [1,]    1    1
163s  [2,]    2    1
163s  [3,]    3    1
163s  [4,]    1    2
163s  [5,]    2    2
163s  [6,]    3    2
163s  [7,]    1    3
163s  [8,]    2    3
163s  [9,]    3    3
163s [10,]    1    4
163s [11,]    2    4
163s [12,]    3    4
163s 
163s Slot "sp":
163s SpatialPoints:
163s        x y
163s point1 0 0
163s point2 0 1
163s point3 1 1
163s Coordinate Reference System (CRS) arguments: NA 
163s 
163s Slot "time":
163s                     timeIndex
163s 2010-08-05 10:00:00         1
163s 2010-08-05 11:00:00         2
163s 2010-08-05 12:00:00         3
163s 2010-08-05 13:00:00         4
163s 
163s Slot "endTime":
163s [1] "2010-08-05 11:00:00 GMT" "2010-08-05 12:00:00 GMT"
163s [3] "2010-08-05 13:00:00 GMT" "2010-08-05 14:00:00 GMT"
163s 
163s > stsdf[1,,"values", drop=FALSE] # stays STIDF:
163s An object of class "STSDF"
163s Slot "data":
163s    values
163s 1    8.77
163s 4    8.47
163s 7   10.80
163s 10   9.74
163s 
163s Slot "index":
163s      [,1] [,2]
163s [1,]    1    1
163s [2,]    1    2
163s [3,]    1    3
163s [4,]    1    4
163s 
163s Slot "sp":
163s SpatialPoints:
163s        x y
163s point1 0 0
163s Coordinate Reference System (CRS) arguments: NA 
163s 
163s Slot "time":
163s                     timeIndex
163s 2010-08-05 10:00:00         1
163s 2010-08-05 11:00:00         2
163s 2010-08-05 12:00:00         3
163s 2010-08-05 13:00:00         4
163s 
163s Slot "endTime":
163s [1] "2010-08-05 11:00:00 GMT" "2010-08-05 12:00:00 GMT"
163s [3] "2010-08-05 13:00:00 GMT" "2010-08-05 14:00:00 GMT"
163s 
163s > stsdf[,1, drop=FALSE] #stays STIDF
163s An object of class "STSDF"
163s Slot "data":
163s   values      ID   newVal    NewID
163s 1   8.77 OldIDs1 -1.24345 NewIDs12
163s 2  18.70 OldIDs2 -1.47698 NewIDs11
163s 3  29.70 OldIDs3 -0.84284 NewIDs10
163s 
163s Slot "index":
163s      [,1] [,2]
163s [1,]    1    1
163s [2,]    2    1
163s [3,]    3    1
163s 
163s Slot "sp":
163s SpatialPoints:
163s        x y
163s point1 0 0
163s point2 0 1
163s point3 1 1
163s Coordinate Reference System (CRS) arguments: NA 
163s 
163s Slot "time":
163s                     timeIndex
163s 2010-08-05 10:00:00         1
163s 
163s Slot "endTime":
163s [1] "2010-08-05 11:00:00 GMT"
163s 
163s > format(as.data.frame(stsdf), tz="GMT")
163s    x y  sp.ID                time             endTime timeIndex values       ID
163s 1  0 0 point1 2010-08-05 10:00:00 2010-08-05 11:00:00         1   8.77  OldIDs1
163s 2  0 1 point2 2010-08-05 10:00:00 2010-08-05 11:00:00         1  18.70  OldIDs2
163s 3  1 1 point3 2010-08-05 10:00:00 2010-08-05 11:00:00         1  29.70  OldIDs3
163s 4  0 0 point1 2010-08-05 11:00:00 2010-08-05 12:00:00         2   8.47  OldIDs4
163s 5  0 1 point2 2010-08-05 11:00:00 2010-08-05 12:00:00         2  21.10  OldIDs5
163s 6  1 1 point3 2010-08-05 11:00:00 2010-08-05 12:00:00         2  32.50  OldIDs6
163s 7  0 0 point1 2010-08-05 12:00:00 2010-08-05 13:00:00         3  10.80  OldIDs7
163s 8  0 1 point2 2010-08-05 12:00:00 2010-08-05 13:00:00         3  20.20  OldIDs8
163s 9  1 1 point3 2010-08-05 12:00:00 2010-08-05 13:00:00         3  29.00  OldIDs9
163s 10 0 0 point1 2010-08-05 13:00:00 2010-08-05 14:00:00         4   9.74 OldIDs10
163s 11 0 1 point2 2010-08-05 13:00:00 2010-08-05 14:00:00         4  20.70 OldIDs11
163s 12 1 1 point3 2010-08-05 13:00:00 2010-08-05 14:00:00         4  30.50 OldIDs12
163s      newVal    NewID
163s 1  -1.24345 NewIDs12
163s 2  -1.47698 NewIDs11
163s 3  -0.84284 NewIDs10
163s 4   1.54992  NewIDs9
163s 5   1.04955  NewIDs8
163s 6   1.35744  NewIDs7
163s 7   1.33925  NewIDs6
163s 8   0.77757  NewIDs5
163s 9   0.39454  NewIDs4
163s 10  0.15138  NewIDs3
163s 11 -0.38780  NewIDs2
163s 12  0.46815  NewIDs1
163s > format(as(stsdf, "data.frame"), tz="GMT")
163s    x y  sp.ID                time             endTime timeIndex values       ID
163s 1  0 0 point1 2010-08-05 10:00:00 2010-08-05 11:00:00         1   8.77  OldIDs1
163s 2  0 1 point2 2010-08-05 10:00:00 2010-08-05 11:00:00         1  18.70  OldIDs2
163s 3  1 1 point3 2010-08-05 10:00:00 2010-08-05 11:00:00         1  29.70  OldIDs3
163s 4  0 0 point1 2010-08-05 11:00:00 2010-08-05 12:00:00         2   8.47  OldIDs4
163s 5  0 1 point2 2010-08-05 11:00:00 2010-08-05 12:00:00         2  21.10  OldIDs5
163s 6  1 1 point3 2010-08-05 11:00:00 2010-08-05 12:00:00         2  32.50  OldIDs6
163s 7  0 0 point1 2010-08-05 12:00:00 2010-08-05 13:00:00         3  10.80  OldIDs7
163s 8  0 1 point2 2010-08-05 12:00:00 2010-08-05 13:00:00         3  20.20  OldIDs8
163s 9  1 1 point3 2010-08-05 12:00:00 2010-08-05 13:00:00         3  29.00  OldIDs9
163s 10 0 0 point1 2010-08-05 13:00:00 2010-08-05 14:00:00         4   9.74 OldIDs10
163s 11 0 1 point2 2010-08-05 13:00:00 2010-08-05 14:00:00         4  20.70 OldIDs11
163s 12 1 1 point3 2010-08-05 13:00:00 2010-08-05 14:00:00         4  30.50 OldIDs12
163s      newVal    NewID
163s 1  -1.24345 NewIDs12
163s 2  -1.47698 NewIDs11
163s 3  -0.84284 NewIDs10
163s 4   1.54992  NewIDs9
163s 5   1.04955  NewIDs8
163s 6   1.35744  NewIDs7
163s 7   1.33925  NewIDs6
163s 8   0.77757  NewIDs5
163s 9   0.39454  NewIDs4
163s 10  0.15138  NewIDs3
163s 11 -0.38780  NewIDs2
163s 12  0.46815  NewIDs1
163s > 
163s > stidf = as(stfdf, "STIDF")
163s > stidf[[1]]
163s  [1]  8.77 18.70 29.70  8.47 21.10 32.50 10.80 20.20 29.00  9.74 20.70 30.50
163s > stidf[["values"]]
163s  [1]  8.77 18.70 29.70  8.47 21.10 32.50 10.80 20.20 29.00  9.74 20.70 30.50
163s > stidf[["newVal"]] <- rnorm(12)
163s > stidf$ID
163s  [1] "OldIDs1"  "OldIDs2"  "OldIDs3"  "OldIDs4"  "OldIDs5"  "OldIDs6" 
163s  [7] "OldIDs7"  "OldIDs8"  "OldIDs9"  "OldIDs10" "OldIDs11" "OldIDs12"
163s > stidf$ID = paste("OldIDs", 1:12, sep="")
163s > stidf$NewID = paste("NewIDs", 12:1, sep="")
163s > stidf
163s An object of class "STIDF"
163s Slot "data":
163s    values       ID   newVal    NewID
163s 1    8.77  OldIDs1  1.67415 NewIDs12
163s 2   18.70  OldIDs2 -1.47819 NewIDs11
163s 3   29.70  OldIDs3 -1.63290 NewIDs10
163s 4    8.47  OldIDs4 -0.97491  NewIDs9
163s 5   21.10  OldIDs5 -0.76499  NewIDs8
163s 6   32.50  OldIDs6  0.10300  NewIDs7
163s 7   10.80  OldIDs7 -1.06830  NewIDs6
163s 8   20.20  OldIDs8  0.47947  NewIDs5
163s 9   29.00  OldIDs9  1.17482  NewIDs4
163s 10   9.74 OldIDs10  1.03354  NewIDs3
163s 11  20.70 OldIDs11  0.82826  NewIDs2
163s 12  30.50 OldIDs12 -0.75862  NewIDs1
163s 
163s Slot "sp":
163s SpatialPoints:
163s          x y
163s point1   0 0
163s point2   0 1
163s point3   1 1
163s point1.1 0 0
163s point2.1 0 1
163s point3.1 1 1
163s point1.2 0 0
163s point2.2 0 1
163s point3.2 1 1
163s point1.3 0 0
163s point2.3 0 1
163s point3.3 1 1
163s Coordinate Reference System (CRS) arguments: NA 
163s 
163s Slot "time":
163s                     timeIndex
163s 2010-08-05 10:00:00         1
163s 2010-08-05 10:00:00         1
163s 2010-08-05 10:00:00         1
163s 2010-08-05 11:00:00         2
163s 2010-08-05 11:00:00         2
163s 2010-08-05 11:00:00         2
163s 2010-08-05 12:00:00         3
163s 2010-08-05 12:00:00         3
163s 2010-08-05 12:00:00         3
163s 2010-08-05 13:00:00         4
163s 2010-08-05 13:00:00         4
163s 2010-08-05 13:00:00         4
163s 
163s Slot "endTime":
163s  [1] "2010-08-05 11:00:00 GMT" "2010-08-05 11:00:00 GMT"
163s  [3] "2010-08-05 11:00:00 GMT" "2010-08-05 12:00:00 GMT"
163s  [5] "2010-08-05 12:00:00 GMT" "2010-08-05 12:00:00 GMT"
163s  [7] "2010-08-05 13:00:00 GMT" "2010-08-05 13:00:00 GMT"
163s  [9] "2010-08-05 13:00:00 GMT" "2010-08-05 14:00:00 GMT"
163s [11] "2010-08-05 14:00:00 GMT" "2010-08-05 14:00:00 GMT"
163s 
163s > stidf[,1] # SpatialPointsDataFrame:
163s An object of class "STIDF"
163s Slot "data":
163s   values      ID newVal    NewID
163s 1   8.77 OldIDs1 1.6741 NewIDs12
163s 
163s Slot "sp":
163s SpatialPoints:
163s        x y
163s point1 0 0
163s Coordinate Reference System (CRS) arguments: NA 
163s 
163s Slot "time":
163s                     timeIndex
163s 2010-08-05 10:00:00         1
163s 
163s Slot "endTime":
163s [1] "2010-08-05 11:00:00 GMT"
163s 
163s > stidf[,,1]
163s An object of class "STIDF"
163s Slot "data":
163s    values
163s 1    8.77
163s 2   18.70
163s 3   29.70
163s 4    8.47
163s 5   21.10
163s 6   32.50
163s 7   10.80
163s 8   20.20
163s 9   29.00
163s 10   9.74
163s 11  20.70
163s 12  30.50
163s 
163s Slot "sp":
163s SpatialPoints:
163s          x y
163s point1   0 0
163s point2   0 1
163s point3   1 1
163s point1.1 0 0
163s point2.1 0 1
163s point3.1 1 1
163s point1.2 0 0
163s point2.2 0 1
163s point3.2 1 1
163s point1.3 0 0
163s point2.3 0 1
163s point3.3 1 1
163s Coordinate Reference System (CRS) arguments: NA 
163s 
163s Slot "time":
163s                     timeIndex
163s 2010-08-05 10:00:00         1
163s 2010-08-05 10:00:00         1
163s 2010-08-05 10:00:00         1
163s 2010-08-05 11:00:00         2
163s 2010-08-05 11:00:00         2
163s 2010-08-05 11:00:00         2
163s 2010-08-05 12:00:00         3
163s 2010-08-05 12:00:00         3
163s 2010-08-05 12:00:00         3
163s 2010-08-05 13:00:00         4
163s 2010-08-05 13:00:00         4
163s 2010-08-05 13:00:00         4
163s 
163s Slot "endTime":
163s  [1] "2010-08-05 11:00:00 GMT" "2010-08-05 11:00:00 GMT"
163s  [3] "2010-08-05 11:00:00 GMT" "2010-08-05 12:00:00 GMT"
163s  [5] "2010-08-05 12:00:00 GMT" "2010-08-05 12:00:00 GMT"
163s  [7] "2010-08-05 13:00:00 GMT" "2010-08-05 13:00:00 GMT"
163s  [9] "2010-08-05 13:00:00 GMT" "2010-08-05 14:00:00 GMT"
163s [11] "2010-08-05 14:00:00 GMT" "2010-08-05 14:00:00 GMT"
163s 
163s > stidf[1,,1] # xts
163s An object of class "STIDF"
163s Slot "data":
163s   values
163s 1   8.77
163s 
163s Slot "sp":
163s SpatialPoints:
163s        x y
163s point1 0 0
163s Coordinate Reference System (CRS) arguments: NA 
163s 
163s Slot "time":
163s                     timeIndex
163s 2010-08-05 10:00:00         1
163s 
163s Slot "endTime":
163s [1] "2010-08-05 11:00:00 GMT"
163s 
163s > stidf[,,"ID"]
163s An object of class "STIDF"
163s Slot "data":
163s          ID
163s 1   OldIDs1
163s 2   OldIDs2
163s 3   OldIDs3
163s 4   OldIDs4
163s 5   OldIDs5
163s 6   OldIDs6
163s 7   OldIDs7
163s 8   OldIDs8
163s 9   OldIDs9
163s 10 OldIDs10
163s 11 OldIDs11
163s 12 OldIDs12
163s 
163s Slot "sp":
163s SpatialPoints:
163s          x y
163s point1   0 0
163s point2   0 1
163s point3   1 1
163s point1.1 0 0
163s point2.1 0 1
163s point3.1 1 1
163s point1.2 0 0
163s point2.2 0 1
163s point3.2 1 1
163s point1.3 0 0
163s point2.3 0 1
163s point3.3 1 1
163s Coordinate Reference System (CRS) arguments: NA 
163s 
163s Slot "time":
163s                     timeIndex
163s 2010-08-05 10:00:00         1
163s 2010-08-05 10:00:00         1
163s 2010-08-05 10:00:00         1
163s 2010-08-05 11:00:00         2
163s 2010-08-05 11:00:00         2
163s 2010-08-05 11:00:00         2
163s 2010-08-05 12:00:00         3
163s 2010-08-05 12:00:00         3
163s 2010-08-05 12:00:00         3
163s 2010-08-05 13:00:00         4
163s 2010-08-05 13:00:00         4
163s 2010-08-05 13:00:00         4
163s 
163s Slot "endTime":
163s  [1] "2010-08-05 11:00:00 GMT" "2010-08-05 11:00:00 GMT"
163s  [3] "2010-08-05 11:00:00 GMT" "2010-08-05 12:00:00 GMT"
163s  [5] "2010-08-05 12:00:00 GMT" "2010-08-05 12:00:00 GMT"
163s  [7] "2010-08-05 13:00:00 GMT" "2010-08-05 13:00:00 GMT"
163s  [9] "2010-08-05 13:00:00 GMT" "2010-08-05 14:00:00 GMT"
163s [11] "2010-08-05 14:00:00 GMT" "2010-08-05 14:00:00 GMT"
163s 
163s > stidf[1,,"values", drop=FALSE] # stays STIDF:
163s An object of class "STIDF"
163s Slot "data":
163s   values
163s 1   8.77
163s 
163s Slot "sp":
163s SpatialPoints:
163s        x y
163s point1 0 0
163s Coordinate Reference System (CRS) arguments: NA 
163s 
163s Slot "time":
163s                     timeIndex
163s 2010-08-05 10:00:00         1
163s 
163s Slot "endTime":
163s [1] "2010-08-05 11:00:00 GMT"
163s 
163s > stidf[,1, drop=FALSE] #stays STIDF
163s An object of class "STIDF"
163s Slot "data":
163s   values      ID newVal    NewID
163s 1   8.77 OldIDs1 1.6741 NewIDs12
163s 
163s Slot "sp":
163s SpatialPoints:
163s        x y
163s point1 0 0
163s Coordinate Reference System (CRS) arguments: NA 
163s 
163s Slot "time":
163s                     timeIndex
163s 2010-08-05 10:00:00         1
163s 
163s Slot "endTime":
163s [1] "2010-08-05 11:00:00 GMT"
163s 
163s > format(as.data.frame(stidf), tz="GMT")
163s    x y    sp.ID                time             endTime timeIndex values
163s 1  0 0   point1 2010-08-05 10:00:00 2010-08-05 11:00:00         1   8.77
163s 2  0 1   point2 2010-08-05 10:00:00 2010-08-05 11:00:00         1  18.70
163s 3  1 1   point3 2010-08-05 10:00:00 2010-08-05 11:00:00         1  29.70
163s 4  0 0 point1.1 2010-08-05 11:00:00 2010-08-05 12:00:00         2   8.47
163s 5  0 1 point2.1 2010-08-05 11:00:00 2010-08-05 12:00:00         2  21.10
163s 6  1 1 point3.1 2010-08-05 11:00:00 2010-08-05 12:00:00         2  32.50
163s 7  0 0 point1.2 2010-08-05 12:00:00 2010-08-05 13:00:00         3  10.80
163s 8  0 1 point2.2 2010-08-05 12:00:00 2010-08-05 13:00:00         3  20.20
163s 9  1 1 point3.2 2010-08-05 12:00:00 2010-08-05 13:00:00         3  29.00
163s 10 0 0 point1.3 2010-08-05 13:00:00 2010-08-05 14:00:00         4   9.74
163s 11 0 1 point2.3 2010-08-05 13:00:00 2010-08-05 14:00:00         4  20.70
163s 12 1 1 point3.3 2010-08-05 13:00:00 2010-08-05 14:00:00         4  30.50
163s          ID   newVal    NewID
163s 1   OldIDs1  1.67415 NewIDs12
163s 2   OldIDs2 -1.47819 NewIDs11
163s 3   OldIDs3 -1.63290 NewIDs10
163s 4   OldIDs4 -0.97491  NewIDs9
163s 5   OldIDs5 -0.76499  NewIDs8
163s 6   OldIDs6  0.10300  NewIDs7
163s 7   OldIDs7 -1.06830  NewIDs6
163s 8   OldIDs8  0.47947  NewIDs5
163s 9   OldIDs9  1.17482  NewIDs4
163s 10 OldIDs10  1.03354  NewIDs3
163s 11 OldIDs11  0.82826  NewIDs2
163s 12 OldIDs12 -0.75862  NewIDs1
163s > format(as(stidf, "data.frame"), tz="GMT")
163s    x y    sp.ID                time             endTime timeIndex values
163s 1  0 0   point1 2010-08-05 10:00:00 2010-08-05 11:00:00         1   8.77
163s 2  0 1   point2 2010-08-05 10:00:00 2010-08-05 11:00:00         1  18.70
163s 3  1 1   point3 2010-08-05 10:00:00 2010-08-05 11:00:00         1  29.70
163s 4  0 0 point1.1 2010-08-05 11:00:00 2010-08-05 12:00:00         2   8.47
163s 5  0 1 point2.1 2010-08-05 11:00:00 2010-08-05 12:00:00         2  21.10
163s 6  1 1 point3.1 2010-08-05 11:00:00 2010-08-05 12:00:00         2  32.50
163s 7  0 0 point1.2 2010-08-05 12:00:00 2010-08-05 13:00:00         3  10.80
163s 8  0 1 point2.2 2010-08-05 12:00:00 2010-08-05 13:00:00         3  20.20
163s 9  1 1 point3.2 2010-08-05 12:00:00 2010-08-05 13:00:00         3  29.00
163s 10 0 0 point1.3 2010-08-05 13:00:00 2010-08-05 14:00:00         4   9.74
163s 11 0 1 point2.3 2010-08-05 13:00:00 2010-08-05 14:00:00         4  20.70
163s 12 1 1 point3.3 2010-08-05 13:00:00 2010-08-05 14:00:00         4  30.50
163s          ID   newVal    NewID
163s 1   OldIDs1  1.67415 NewIDs12
163s 2   OldIDs2 -1.47819 NewIDs11
163s 3   OldIDs3 -1.63290 NewIDs10
163s 4   OldIDs4 -0.97491  NewIDs9
163s 5   OldIDs5 -0.76499  NewIDs8
163s 6   OldIDs6  0.10300  NewIDs7
163s 7   OldIDs7 -1.06830  NewIDs6
163s 8   OldIDs8  0.47947  NewIDs5
163s 9   OldIDs9  1.17482  NewIDs4
163s 10 OldIDs10  1.03354  NewIDs3
163s 11 OldIDs11  0.82826  NewIDs2
163s 12 OldIDs12 -0.75862  NewIDs1
163s > 
163s > sp = cbind(x = c(0,0,1), y = c(0,1,1))
163s > row.names(sp) = paste("point", 1:nrow(sp), sep="")
163s > sp = SpatialPoints(sp)
163s > library(xts)
163s > time = xts(1:4, as.POSIXct("2010-08-05", tz="GMT")+3600*(10:13))
163s > mydata = rnorm(length(sp)*length(time),mean=rep(m, 4))
163s > IDs = paste("ID", 1:length(mydata), sep = "_")
163s > mydata = data.frame(values = signif(mydata,3), ID=IDs)
163s > spx = SpatialPointsDataFrame(sp, data.frame(values = c("a", "b", "c")))
163s > try(stfdf <- STFDF(spx, time, mydata))
163s > timex = time
163s > names(timex) = "values"
163s > try(stfdf <- STFDF(sp, timex, mydata))
163s > mydatax = mydata
163s > names(mydatax) = "x"
163s > try(stfdf <- STFDF(spx, timex, mydatax))
163s > stfdf = STFDF(sp, timex, mydatax)
163s Loading required package: zoo
163s 
163s Attaching package: ‘zoo’
163s 
163s The following objects are masked from ‘package:base’:
163s 
163s     as.Date, as.Date.numeric
163s 
163s Error in .checkAttrIsUnique(object@sp, object@time, object@data) : 
163s   name conflict: attribute name(s) in data already present in sp slot of ST object
163s Error in .checkAttrIsUnique(object@sp, object@time, object@data) : 
163s   name conflict: attribute name(s) in data already present in time slot of ST object
163s Error in validityMethod(object) : 
163s   name conflict: attribute names in sp and time slot must differ
163s > try(stfdf[["values"]] <- 1:12)
163s Error in .checkAttrIsUnique(x@sp, x@time, x@data) : 
163s   name conflict: attribute name(s) in data already present in time slot of ST object
163s > stfdf = STFDF(spx, time, mydatax)
163s > try(stfdf[["values"]] <- 1:12)
163s > 
163s Error in .checkAttrIsUnique(x@sp, x@time, x@data) : 
163s   name conflict: attribute name(s) in data already present in sp slot of ST object
163s BEGIN TEST over.R
163s 
163s R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
163s Copyright (C) 2024 The R Foundation for Statistical Computing
163s Platform: x86_64-pc-linux-gnu
163s 
163s R is free software and comes with ABSOLUTELY NO WARRANTY.
163s You are welcome to redistribute it under certain conditions.
163s Type 'license()' or 'licence()' for distribution details.
163s 
163s R is a collaborative project with many contributors.
163s Type 'contributors()' for more information and
163s 'citation()' on how to cite R or R packages in publications.
163s 
163s Type 'demo()' for some demos, 'help()' for on-line help, or
163s 'help.start()' for an HTML browser interface to help.
163s Type 'q()' to quit R.
163s 
163s > require(sp)
163s Loading required package: sp
163s > require(spacetime)
163s Loading required package: spacetime
163s > options(xts_check_TZ=FALSE)
163s > 
163s > # go through time matching first:
163s > x = as.POSIXct("2000-01-01", tz="GMT") + (0:9) * 3600
163s > y = x + 1
163s > y[1] = y[2]
163s > format(x, tz="GMT")
163s  [1] "2000-01-01 00:00:00" "2000-01-01 01:00:00" "2000-01-01 02:00:00"
163s  [4] "2000-01-01 03:00:00" "2000-01-01 04:00:00" "2000-01-01 05:00:00"
163s  [7] "2000-01-01 06:00:00" "2000-01-01 07:00:00" "2000-01-01 08:00:00"
163s [10] "2000-01-01 09:00:00"
163s > format(y, tz="GMT")
163s  [1] "2000-01-01 01:00:01" "2000-01-01 01:00:01" "2000-01-01 02:00:01"
163s  [4] "2000-01-01 03:00:01" "2000-01-01 04:00:01" "2000-01-01 05:00:01"
163s  [7] "2000-01-01 06:00:01" "2000-01-01 07:00:01" "2000-01-01 08:00:01"
163s [10] "2000-01-01 09:00:01"
163s > end.x = delta(x)
163s > end.y = delta(y)
163s > timeMatch(y, y)
163s  [1]  1  1  3  4  5  6  7  8  9 10
163s > timeMatch(y, y, end.x = end.y, end.y = end.y)
163s  [1] NA  2  3  4  5  6  7  8  9 10
163s > 
163s > timeMatch(x, y)
163s  [1] NA NA NA NA NA NA NA NA NA NA
163s > timeMatch(x, y, end.y = end.y)
163s Warning messages:
163s 1: Some empty 'to' intervals encountered. Setting to NA... 
163s 2: Some empty 'from' intervals encountered. Setting to NA... 
163s  [1] NA NA  2  3  4  5  6  7  8  9
163s > timeMatch(x, y, end.x = end.x)
163s Warning message:
163s Some empty 'to' intervals encountered. Setting to NA... 
163s  [1] NA  1  3  4  5  6  7  8  9 10
163s > timeMatch(x, y, end.x = end.x, end.y = end.y)
163s  [1] NA  2  2  3  4  5  6  7  8  9
163s > 
163s > timeMatch(x, y, returnList = TRUE)
163s Warning message:
163s Some empty 'to' intervals encountered. Setting to NA... 
163s [[1]]
163s integer(0)
163s 
163s [[2]]
163s integer(0)
163s 
163s [[3]]
163s integer(0)
163s 
163s [[4]]
163s integer(0)
163s 
163s [[5]]
163s integer(0)
163s 
163s [[6]]
163s integer(0)
163s 
163s [[7]]
163s integer(0)
163s 
163s [[8]]
163s integer(0)
163s 
163s [[9]]
163s integer(0)
163s 
163s [[10]]
163s integer(0)
163s 
163s > timeMatch(x, y, returnList = TRUE, end.y = end.y)
163s Warning message:
163s Some empty 'to' intervals encountered. Setting to NA... 
163s [[1]]
163s integer(0)
163s 
163s [[2]]
163s integer(0)
163s 
163s [[3]]
163s [1] 2
163s 
163s [[4]]
163s [1] 3
163s 
163s [[5]]
163s [1] 4
163s 
163s [[6]]
163s [1] 5
163s 
163s [[7]]
163s [1] 6
163s 
163s [[8]]
163s [1] 7
163s 
163s [[9]]
163s [1] 8
163s 
163s [[10]]
163s [1] 9
163s 
163s > timeMatch(x, y, returnList = TRUE, end.x = end.x)
163s [[1]]
163s integer(0)
163s 
163s [[2]]
163s [1] 1 2
163s 
163s [[3]]
163s [1] 3
163s 
163s [[4]]
163s [1] 4
163s 
163s [[5]]
163s [1] 5
163s 
163s [[6]]
163s [1] 6
163s 
163s [[7]]
163s [1] 7
163s 
163s [[8]]
163s [1] 8
163s 
163s [[9]]
163s [1] 9
163s 
163s [[10]]
163s [1] 10
163s 
163s > timeMatch(x, y, returnList = TRUE, end.x = end.x, end.y = end.y)
163s [[1]]
163s integer(0)
163s 
163s [[2]]
163s [1] 2
163s 
163s [[3]]
163s [1] 2 3
163s 
163s [[4]]
163s [1] 3 4
163s 
163s [[5]]
163s [1] 4 5
163s 
163s [[6]]
163s [1] 5 6
163s 
163s [[7]]
163s [1] 6 7
163s 
163s [[8]]
163s [1] 7 8
163s 
163s [[9]]
163s [1] 8 9
163s 
163s [[10]]
163s [1]  9 10
163s 
163s > 
163s > end.x = delta(x)
163s Warning message:
163s Some empty 'to' intervals encountered. Setting to NA... 
163s > y = x + 1 # don't replicate the first
163s > end.y = delta(y)
163s > 
163s > a = timeMatch(x, y, end.x = end.x, end.y = end.y)
163s > library(intervals)
163s > b = timeMatch(x, y, end.x = end.x, end.y = end.y)
163s > detach()
163s > all.equal(a, b)
163s [1] TRUE
163s > 
163s > a = timeMatch(x, y, end.y = end.y)
163s > library(intervals)
163s > b = timeMatch(x, y, end.y = end.y)
163s > detach()
163s > all.equal(a, b)
163s [1] TRUE
163s > 
163s > a = timeMatch(x, y, end.x = end.x)
163s > library(intervals)
163s > b = timeMatch(x, y, end.x = end.x)
163s > detach()
163s > all.equal(a, b)
163s [1] TRUE
163s > 
163s > # with end points:
163s > 
163s > # next, try ST?DF objects:
163s > t = as.POSIXct("2010-05-01", tz="GMT")+3600*1:10
163s > xy = SpatialPixels(SpatialPoints(expand.grid(1:10,1:10)))
163s > y = STFDF(xy, t, data.frame(a = 1:1000))
163s > stplot(y)
164s > x = y
164s > all(over(x, y) == 1:1000)
164s [1] TRUE
164s > 
164s > t0 = c(t[1]-1,t[c(2,4,10)]) # c() drops TZ?
164s > attr(t0, "tzone") = attr(t, "tzone")
164s > x = c(4,5,6,8)
164s > xy = SpatialPixels(SpatialPoints(expand.grid(x,rep(1,4))))
164s > x = STFDF(xy, t0, data.frame(a = 1:64))
164s Warning messages:
164s 1: In points2grid(points, tolerance, round) :
164s   grid has empty column/rows in dimension 1
164s 2: In points2grid(points, tolerance, round) :
164s   cell size from constant coordinate 2 possibly taken from other coordinate
164s > over(x, y)
164s      a
164s 1    4
164s 2    5
164s 3    6
164s 4    8
164s 5    4
164s 6    5
164s 7    6
164s 8    8
164s 9    4
164s 10   5
164s 11   6
164s 12   8
164s 13   4
164s 14   5
164s 15   6
164s 16   8
164s 17 104
164s 18 105
164s 19 106
164s 20 108
164s 21 104
164s 22 105
164s 23 106
164s 24 108
164s 25 104
164s 26 105
164s 27 106
164s 28 108
164s 29 104
164s 30 105
164s 31 106
164s 32 108
164s 33 304
164s 34 305
164s 35 306
164s 36 308
164s 37 304
164s 38 305
164s 39 306
164s 40 308
164s 41 304
164s 42 305
164s 43 306
164s 44 308
164s 45 304
164s 46 305
164s 47 306
164s 48 308
164s 49 904
164s 50 905
164s 51 906
164s 52 908
164s 53 904
164s 54 905
164s 55 906
164s 56 908
164s 57 904
164s 58 905
164s 59 906
164s 60 908
164s 61 904
164s 62 905
164s 63 906
164s 64 908
164s > 
164s > x = as(x, "STSDF")
164s > over(x, y)
164s      a
164s 1    4
164s 2    5
164s 3    6
164s 4    8
164s 5    4
164s 6    5
164s 7    6
164s 8    8
164s 9    4
164s 10   5
164s 11   6
164s 12   8
164s 13   4
164s 14   5
164s 15   6
164s 16   8
164s 17 104
164s 18 105
164s 19 106
164s 20 108
164s 21 104
164s 22 105
164s 23 106
164s 24 108
164s 25 104
164s 26 105
164s 27 106
164s 28 108
164s 29 104
164s 30 105
164s 31 106
164s 32 108
164s 33 304
164s 34 305
164s 35 306
164s 36 308
164s 37 304
164s 38 305
164s 39 306
164s 40 308
164s 41 304
164s 42 305
164s 43 306
164s 44 308
164s 45 304
164s 46 305
164s 47 306
164s 48 308
164s 49 904
164s 50 905
164s 51 906
164s 52 908
164s 53 904
164s 54 905
164s 55 906
164s 56 908
164s 57 904
164s 58 905
164s 59 906
164s 60 908
164s 61 904
164s 62 905
164s 63 906
164s 64 908
164s > 
164s > xy = SpatialPoints(cbind(c(1,3,5,10),c(5, 3, 8, 2)))
164s > x = STIDF(xy, t0, data.frame(a = 1:4))
164s > over(x,y)
164s     a
164s 1  NA
164s 2 123
164s 3 375
164s 4 920
164s > 
164s > t1 = c(t[1]-1,t[c(2,2,10)])
164s > attr(t1, "tzone") = attr(t, "tzone")
164s > x1 = STIDF(xy[c(1,2,2,4)], t1, data.frame(a = 1:4))
164s > 
164s > over(x1, x)
164s   a
164s 1 1
164s 2 2
164s 3 2
164s 4 4
164s > over(x, x1)
164s    a
164s 1  1
164s 2  2
164s 3 NA
164s 4  4
164s > over(x1, x, returnList = TRUE)
164s [[1]]
164s   a
164s 1 1
164s 
164s [[2]]
164s   a
164s 2 2
164s 
164s [[3]]
164s   a
164s 2 2
164s 
164s [[4]]
164s   a
164s 4 4
164s 
164s > over(x, x1, returnList = TRUE)
164s [[1]]
164s   a
164s 1 1
164s 
164s [[2]]
164s   a
164s 2 2
164s 4 4
164s 
164s [[3]]
164s [1] a
164s <0 rows> (or 0-length row.names)
164s 
164s [[4]]
164s   a
164s 4 4
164s 
164s > 
164s BEGIN TEST raster.R
164s 
164s R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
164s Copyright (C) 2024 The R Foundation for Statistical Computing
164s Platform: x86_64-pc-linux-gnu
164s 
164s R is free software and comes with ABSOLUTELY NO WARRANTY.
164s You are welcome to redistribute it under certain conditions.
164s Type 'license()' or 'licence()' for distribution details.
164s 
164s R is a collaborative project with many contributors.
164s Type 'contributors()' for more information and
164s 'citation()' on how to cite R or R packages in publications.
164s 
164s Type 'demo()' for some demos, 'help()' for on-line help, or
164s 'help.start()' for an HTML browser interface to help.
164s Type 'q()' to quit R.
164s 
164s > library(spacetime)
164s > if (require(raster, quietly = TRUE)) {
164s +  x <- brick(system.file("external/rlogo.grd", package="raster"))
164s +  x <- setZ(x, as.Date(1:nlayers(x), origin = "1970-01-01"))
164s +  stplot(x)
164s + }
165s code for methods in class “Rcpp_SpatCategories” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
165s code for methods in class “Rcpp_SpatCategories” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
165s code for methods in class “Rcpp_SpatDataFrame” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
165s code for methods in class “Rcpp_SpatDataFrame” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
165s code for methods in class “Rcpp_SpatExtent” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
165s code for methods in class “Rcpp_SpatExtent” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
165s code for methods in class “Rcpp_SpatFactor” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
165s code for methods in class “Rcpp_SpatFactor” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
165s code for methods in class “Rcpp_SpatGraph” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
165s code for methods in class “Rcpp_SpatGraph” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
165s code for methods in class “Rcpp_SpatMessages” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
165s code for methods in class “Rcpp_SpatMessages” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
165s code for methods in class “Rcpp_SpatOptions” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
165s code for methods in class “Rcpp_SpatOptions” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
165s code for methods in class “Rcpp_SpatRaster” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
166s code for methods in class “Rcpp_SpatRaster” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
166s code for methods in class “Rcpp_SpatRasterCollection” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
166s code for methods in class “Rcpp_SpatRasterCollection” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
166s code for methods in class “Rcpp_SpatRasterStack” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
166s code for methods in class “Rcpp_SpatRasterStack” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
166s code for methods in class “Rcpp_SpatSRS” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
166s code for methods in class “Rcpp_SpatSRS” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
166s code for methods in class “Rcpp_SpatTime_v” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
166s code for methods in class “Rcpp_SpatTime_v” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
166s code for methods in class “Rcpp_SpatVector” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
166s code for methods in class “Rcpp_SpatVector” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
166s code for methods in class “Rcpp_SpatVectorCollection” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
166s code for methods in class “Rcpp_SpatVectorCollection” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
166s code for methods in class “Rcpp_SpatVectorProxy” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
166s code for methods in class “Rcpp_SpatVectorProxy” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
167s code for methods in class “Rcpp_SpExtent” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
167s code for methods in class “Rcpp_SpExtent” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
167s code for methods in class “Rcpp_SpPoly” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
167s code for methods in class “Rcpp_SpPoly” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
167s code for methods in class “Rcpp_SpPolyPart” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
167s code for methods in class “Rcpp_SpPolyPart” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
167s code for methods in class “Rcpp_SpPolygons” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
167s code for methods in class “Rcpp_SpPolygons” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
168s > 
168s BEGIN TEST rw.R
168s 
168s R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
168s Copyright (C) 2024 The R Foundation for Statistical Computing
168s Platform: x86_64-pc-linux-gnu
168s 
168s R is free software and comes with ABSOLUTELY NO WARRANTY.
168s You are welcome to redistribute it under certain conditions.
168s Type 'license()' or 'licence()' for distribution details.
168s 
168s R is a collaborative project with many contributors.
168s Type 'contributors()' for more information and
168s 'citation()' on how to cite R or R packages in publications.
168s 
168s Type 'demo()' for some demos, 'help()' for on-line help, or
168s 'help.start()' for an HTML browser interface to help.
168s Type 'q()' to quit R.
168s 
168s > suppressPackageStartupMessages(library(sp))
168s > suppressPackageStartupMessages(library(spacetime))
168s > 
168s > m = 3# nr of trajectories
168s > n = 100 # length of each
168s > l = vector("list", m)
168s > t0 = as.POSIXct("2013-05-05",tz="GMT")
168s > set.seed(1331)
168s > for (i in 1:m) {
168s +     x = cumsum(rnorm(n))
168s +     y = cumsum(rnorm(n))
168s +     sp = SpatialPoints(cbind(x,y))
168s +     #t = t0 + (0:(n-1) + (i-1)*n) * 60
168s +     t = t0 + (0:(n-1) + (i-1)*n/2) * 60
168s +     l[[i]] = STI(sp, t)
168s + }
168s > stt= STT(l)
168s > sttdf = STTDF(stt, data.frame(attr = rnorm(n*m), id = paste("ID", rep(1:m, each=n))))
168s > x = as(stt, "STI")
168s > stplot(sttdf, col=1:m, scales=list(draw=TRUE))
168s > stplot(sttdf, by = "id")
168s > stplot(sttdf[1])
168s > stplot(sttdf[1])
168s > 
168s > p = Polygon(cbind(x=c(-20,-15,-15,-20,-20),y=c(10,10,15,15,10)))
168s > pol=SpatialPolygons(list(Polygons(list(p), "ID")))
168s > #if (require(rgeos, quietly = TRUE)) {
168s > #  stplot(sttdf[pol])
168s > #  names(sttdf[pol]@traj)
168s > #  stplot(sttdf[1:2],col=1:2)
168s > #  stplot(sttdf[,t0])
168s > #  stplot(sttdf[,"2013"])
168s > #  stplot(sttdf[pol,"2013"])
168s > #  is.null(sttdf[pol,t0])
168s > #}
168s > 
168s BEGIN TEST stconstruct.R
169s 
169s R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
169s Copyright (C) 2024 The R Foundation for Statistical Computing
169s Platform: x86_64-pc-linux-gnu
169s 
169s R is free software and comes with ABSOLUTELY NO WARRANTY.
169s You are welcome to redistribute it under certain conditions.
169s Type 'license()' or 'licence()' for distribution details.
169s 
169s R is a collaborative project with many contributors.
169s Type 'contributors()' for more information and
169s 'citation()' on how to cite R or R packages in publications.
169s 
169s Type 'demo()' for some demos, 'help()' for on-line help, or
169s 'help.start()' for an HTML browser interface to help.
169s Type 'q()' to quit R.
169s 
169s > suppressPackageStartupMessages(library(sp))
169s > suppressPackageStartupMessages(library(spacetime))
169s > suppressPackageStartupMessages(library(xts))
169s > 
169s > # example 0: construction with STFDF:
169s > 
169s > ## IGNORE_RDIFF_BEGIN
169s > if (require(maps, quietly = TRUE)) {
169s + states.m = map('state', plot=FALSE, fill=TRUE)
169s + IDs <- sapply(strsplit(states.m$names, ":"), function(x) x[1])
169s +     
169s + if (require(sf, quietly = TRUE)) {
169s + sta = st_as_sf(states.m)
169s + row.names(sta) = unique(IDs)
169s + states = geometry(as(sta, "Spatial"))
169s + 
169s + if (require(plm, quietly = TRUE)) {
169s + data(Produc)
169s + 
169s + yrs = 1970:1986
169s + time = xts(1:17, as.POSIXct(paste(yrs, "-01-01", sep=""), tz = "GMT"))
169s + # deselect District of Columbia, polygon 8, which is not present in Produc:
169s + Produc.st = STFDF(states[-8], time, Produc[(order(Produc[,2], Produc[,1])),])
169s + #stplot(Produc.st[,,"unemp"], yrs)
169s + 
169s + # example 1: st from long table, with states as Spatial object:
169s + # use Date format for time:
169s + Produc$time = as.Date(paste(yrs, "01", "01", sep = "-"))
169s + xy = coordinates(states[-8])
169s + Produc$x = xy[,1]
169s + Produc$y = xy[,2]
169s + #using stConstruct, use polygon centroids for location:
169s + x = stConstruct(Produc, c("x", "y"), "time")
169s + class(x)
169s + stplot(x[,,"unemp"])
169s + 
169s + # alternatively, pass states:
169s + Produc$state = gsub("TENNESSE", "TENNESSEE", Produc$state)
169s + Produc$State = gsub("_", " ", tolower(Produc$state))
169s + x = stConstruct(Produc, "State", "time", states[-8])
169s + class(x)
169s + #stplot(x[,,"unemp"], yrs)
169s + 
169s + if (require(sf, quietly = TRUE)) {
169s + # stConstruct multivariable, time-wide
169s + fname = system.file("shape/nc.shp", package="sf")[1]
169s + nc = as(read_sf(fname), "Spatial")
169s + timesList = list(
169s + 	BIR=c("BIR74", "BIR79"), 
169s + 	NWBIR=c("NWBIR74", "NWBIR79"), 
169s + 	SID=c("SID74", "SID79")
169s + )
169s + t = xts(1:2, as.Date(c("1974-01-01","1979-01-01")))
169s + nc.st = stConstruct(as(nc, "data.frame"), geometry(nc), timesList,
169s + 	TimeObj = t)
169s + }
169s + }}}
169s Linking to GEOS 3.13.0, GDAL 3.10.0, PROJ 9.5.1; sf_use_s2() is TRUE
170s Error in process_cpl_read_ogr(x, quiet, check_ring_dir = check_ring_dir,  : 
170s   package tibble not available: install first?
170s Calls: as ... st_read -> st_read.character -> process_cpl_read_ogr
170s Execution halted
170s autopkgtest [14:43:49]: test run-unit-test: -----------------------]
170s run-unit-test        FAIL non-zero exit status 1
170s autopkgtest [14:43:49]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
171s autopkgtest [14:43:50]: test pkg-r-autopkgtest: preparing testbed
397s autopkgtest [14:47:36]: testbed dpkg architecture: amd64
398s autopkgtest [14:47:37]: testbed apt version: 2.9.18
398s autopkgtest [14:47:37]: @@@@@@@@@@@@@@@@@@@@ test bed setup
398s autopkgtest [14:47:37]: testbed release detected to be: plucky
399s autopkgtest [14:47:38]: updating testbed package index (apt update)
400s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
401s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
401s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
401s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
401s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [129 kB]
401s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.7 kB]
401s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B]
401s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [749 kB]
401s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [294 kB]
401s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [162 kB]
401s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [40.1 kB]
401s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2408 B]
401s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [365 kB]
401s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [946 kB]
401s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [13.0 kB]
401s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [3516 B]
401s Fetched 2801 kB in 2s (1278 kB/s)
402s Reading package lists...
402s Reading package lists...
403s Building dependency tree...
403s Reading state information...
403s Calculating upgrade...
403s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
403s Reading package lists...
403s Building dependency tree...
403s Reading state information...
403s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
403s autopkgtest [14:47:42]: upgrading testbed (apt dist-upgrade and autopurge)
404s Reading package lists...
404s Building dependency tree...
404s Reading state information...
404s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
404s Starting 2 pkgProblemResolver with broken count: 0
404s Done
404s Entering ResolveByKeep
405s 
405s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
405s Reading package lists...
405s Building dependency tree...
405s Reading state information...
405s Starting pkgProblemResolver with broken count: 0
405s Starting 2 pkgProblemResolver with broken count: 0
405s Done
406s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
408s Reading package lists...
408s Building dependency tree...
408s Reading state information...
409s Starting pkgProblemResolver with broken count: 0
409s Starting 2 pkgProblemResolver with broken count: 0
409s Done
409s The following NEW packages will be installed:
409s   build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu
409s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
409s   fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-14
409s   g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14
409s   gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gdal-data gdal-plugins gfortran
409s   gfortran-14 gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu
409s   icu-devtools javascript-common libabsl20230802 libaec0 libaom3
409s   libarmadillo14 libarpack2t64 libasan8 libavif16 libblas-dev libblas3
409s   libblosc1 libbz2-dev libcairo2 libcc1-0 libcfitsio10t64 libdatrie1 libdav1d7
409s   libde265-0 libdeflate-dev libdeflate0 libfontconfig1 libfreexl1 libfyba0t64
409s   libgav1-1 libgcc-14-dev libgdal36 libgeos-c1t64 libgeos3.13.0 libgeotiff5
409s   libgfortran-14-dev libgfortran5 libgif7 libgomp1 libgpgmepp6t64
409s   libgraphite2-3 libharfbuzz0b libhdf4-0-alt libhdf5-103-1t64
409s   libhdf5-hl-100t64 libheif-plugin-aomdec libheif-plugin-libde265 libheif1
409s   libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev
409s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap
409s   libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
409s   libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json
409s   libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js
409s   libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker
409s   libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack-dev liblapack3
409s   liblcms2-2 liblerc4 liblsan0 libltdl7 liblua5.4-0 liblzma-dev libminizip1t64
409s   libmpc3 libmysqlclient24 libncurses-dev libnetcdf19t64 libodbc2 libodbcinst2
409s   libogdi4.1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
409s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
409s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpoppler140 libpq5
409s   libproj25 libqhull-r8.0 libquadmath0 librav1e0.7 libreadline-dev librttopo1
409s   libsharpyuv0 libsm6 libsnappy1v5 libspatialite8t64 libstdc++-14-dev
409s   libsvtav1enc2 libsz2 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev
409s   libtk8.6 libtsan2 libubsan1 libudunits2-0 libudunits2-data liburiparser1
409s   libwebp7 libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1
409s   libxss1 libxt6t64 libyuv0 littler mysql-common node-bootstrap-sass
409s   node-html5shiv node-normalize.css pandoc pandoc-data pkg-r-autopkgtest
409s   pkgconf pkgconf-bin proj-data r-base-core r-base-dev r-cran-base64enc
409s   r-cran-bdsmatrix r-cran-bslib r-cran-cachem r-cran-class r-cran-classint
409s   r-cran-cli r-cran-collapse r-cran-commonmark r-cran-crayon r-cran-dbi
409s   r-cran-digest r-cran-e1071 r-cran-evaluate r-cran-fastmap r-cran-fontawesome
409s   r-cran-foreign r-cran-formula r-cran-fs r-cran-generics r-cran-glue
409s   r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-intervals r-cran-isocodes
409s   r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-later
409s   r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-lmtest r-cran-magrittr
409s   r-cran-mapdata r-cran-maps r-cran-markdown r-cran-mass r-cran-maxlik
409s   r-cran-memoise r-cran-mime r-cran-misctools r-cran-nlme r-cran-pkgkitten
409s   r-cran-plm r-cran-promises r-cran-proxy r-cran-r6 r-cran-rappdirs
409s   r-cran-raster r-cran-rbibutils r-cran-rcolorbrewer r-cran-rcpp r-cran-rdpack
409s   r-cran-rlang r-cran-rmarkdown r-cran-rpostgresql r-cran-s2 r-cran-sandwich
409s   r-cran-sass r-cran-sf r-cran-shiny r-cran-sourcetools r-cran-sp
409s   r-cran-spacetime r-cran-terra r-cran-tinytex r-cran-units r-cran-withr
409s   r-cran-wk r-cran-xfun r-cran-xtable r-cran-xts r-cran-yaml r-cran-zoo
409s   unixodbc-common unzip x11-common xdg-utils zip zlib1g-dev
409s 0 upgraded, 261 newly installed, 0 to remove and 0 not upgraded.
409s Need to get 311 MB of archives.
409s After this operation, 1008 MB of additional disk space will be used.
409s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB]
410s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB]
410s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-12ubuntu1 [11.9 MB]
410s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-12ubuntu1 [1036 B]
410s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B]
410s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB]
410s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-12ubuntu1 [47.6 kB]
410s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-12ubuntu1 [148 kB]
410s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-12ubuntu1 [28.9 kB]
410s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-12ubuntu1 [2998 kB]
410s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-12ubuntu1 [1317 kB]
410s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-12ubuntu1 [2732 kB]
410s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-12ubuntu1 [1177 kB]
410s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-12ubuntu1 [1634 kB]
410s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-12ubuntu1 [153 kB]
410s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-12ubuntu1 [2815 kB]
410s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-12ubuntu1 [23.3 MB]
411s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-12ubuntu1 [533 kB]
411s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B]
411s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B]
411s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-12ubuntu1 [2506 kB]
411s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-12ubuntu1 [13.3 MB]
411s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-12ubuntu1 [20.2 kB]
411s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B]
411s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B]
411s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
411s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB]
411s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
411s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
411s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB]
411s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB]
411s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB]
411s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
411s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
411s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
411s Get:36 http://ftpmaster.internal/ubuntu plucky/universe amd64 gdal-data all 3.10.0+dfsg-1 [269 kB]
411s Get:37 http://ftpmaster.internal/ubuntu plucky/universe amd64 gdal-plugins amd64 3.10.0+dfsg-1 [25.4 kB]
411s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-12ubuntu1 [909 kB]
411s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-12ubuntu1 [965 kB]
412s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-12ubuntu1 [12.5 MB]
412s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-12ubuntu1 [13.1 kB]
412s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1022 B]
412s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.1.0-2ubuntu1 [1172 B]
412s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB]
412s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 11+nmu1 [5936 B]
412s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libabsl20230802 amd64 20230802.1-4ubuntu2 [563 kB]
412s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB]
412s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libaom3 amd64 3.11.0-1 [2761 kB]
412s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-4 [332 kB]
412s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-4 [3177 kB]
412s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 libarpack2t64 amd64 3.9.1-4 [120 kB]
412s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 libarmadillo14 amd64 1:14.2.1+dfsg-1 [105 kB]
412s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 libdav1d7 amd64 1.5.0-1 [732 kB]
412s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgav1-1 amd64 0.19.0-3 [697 kB]
412s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 librav1e0.7 amd64 0.7.1-9 [1025 kB]
412s Get:56 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2686 kB]
412s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB]
412s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
412s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 libyuv0 amd64 0.0.1899.20250103-1 [352 kB]
412s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 libavif16 amd64 1.1.1-1ubuntu1 [113 kB]
412s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.0-4 [307 kB]
412s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libsnappy1v5 amd64 1.2.1-1 [30.4 kB]
412s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 libblosc1 amd64 1.21.5+ds-1build1 [36.2 kB]
412s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB]
412s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB]
412s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB]
412s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B]
412s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB]
412s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB]
412s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcfitsio10t64 amd64 4.5.0-5 [629 kB]
412s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB]
412s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libde265-0 amd64 1.0.15-1build4 [168 kB]
412s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.22-1 [64.5 kB]
412s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.22-1 [72.2 kB]
412s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfyba0t64 amd64 4.1.1-11build1 [119 kB]
412s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [22.9 kB]
412s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfreexl1 amd64 2.0.0-1build2 [41.7 kB]
412s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeos3.13.0 amd64 3.13.0-1 [1017 kB]
412s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeos-c1t64 amd64 3.13.0-1 [103 kB]
412s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 proj-data all 9.5.1-1 [7924 kB]
412s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB]
412s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB]
412s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB]
412s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.4.0-0.1 [231 kB]
412s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB]
412s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 libproj25 amd64 9.5.1-1 [1499 kB]
413s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeotiff5 amd64 1.7.3-1 [63.0 kB]
413s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libgif7 amd64 5.2.2-1ubuntu1 [35.2 kB]
413s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B]
413s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf4-0-alt amd64 4.3.0-1 [285 kB]
413s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-5ubuntu1 [1367 kB]
413s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-aomdec amd64 1.19.3-1 [11.5 kB]
413s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-libde265 amd64 1.19.3-1 [8968 B]
413s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif1 amd64 1.19.3-1 [415 kB]
413s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 liburiparser1 amd64 0.9.8+dfsg-2 [46.8 kB]
413s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmlbase1t64 amd64 1.3.0-12build1 [49.9 kB]
413s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmldom1t64 amd64 1.3.0-12build1 [156 kB]
413s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmlengine1t64 amd64 1.3.0-12build1 [71.4 kB]
413s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 mysql-common all 5.8+1.1.1 [6800 B]
413s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libmysqlclient24 amd64 8.4.3-0ubuntu1 [1255 kB]
413s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-5ubuntu1 [59.5 kB]
413s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf19t64 amd64 1:4.9.2-6ubuntu1 [472 kB]
413s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libltdl7 amd64 2.4.7-8 [43.9 kB]
413s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libodbc2 amd64 2.3.12-1ubuntu1 [158 kB]
413s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 unixodbc-common all 2.3.12-1ubuntu1 [8796 B]
413s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libodbcinst2 amd64 2.3.12-1ubuntu1 [30.7 kB]
413s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 libogdi4.1 amd64 4.1.1+ds-5 [219 kB]
413s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu2 [217 kB]
413s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgmepp6t64 amd64 1.24.1-2ubuntu1 [126 kB]
413s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB]
413s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libpoppler140 amd64 24.08.0-3 [1262 kB]
413s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libpq5 amd64 17.2-1 [153 kB]
413s Get:113 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB]
413s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 librttopo1 amd64 1.1.0-3build2 [191 kB]
413s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 libspatialite8t64 amd64 5.1.0-3build1 [1919 kB]
413s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3 [917 kB]
413s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgdal36 amd64 3.10.0+dfsg-1 [10.2 MB]
414s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB]
414s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.1.0-1 [541 kB]
414s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
414s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB]
414s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB]
414s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB]
414s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B]
414s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B]
414s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
414s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
414s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
414s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB]
414s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
414s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
414s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
414s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
414s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
414s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
414s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
414s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
414s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
414s Get:139 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
414s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.0-4 [6486 kB]
415s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB]
415s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5-2 [384 kB]
415s Get:143 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB]
415s Get:144 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB]
415s Get:145 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.55.0+ds-3 [255 kB]
415s Get:146 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.55.0+ds-3 [51.9 kB]
415s Get:147 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.55.0+ds-3 [29.1 kB]
415s Get:148 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB]
415s Get:149 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB]
415s Get:150 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu3 [214 kB]
415s Get:151 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu3 [201 kB]
415s Get:152 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu3 [6768 B]
415s Get:153 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.42-4ubuntu3 [747 kB]
415s Get:154 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB]
415s Get:155 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB]
415s Get:156 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.44-3 [300 kB]
415s Get:157 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB]
415s Get:158 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB]
415s Get:159 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1085 kB]
415s Get:160 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB]
415s Get:161 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B]
415s Get:162 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.15-1 [862 kB]
415s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 libudunits2-data all 2.2.28-7build1 [19.4 kB]
415s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 libudunits2-0 amd64 2.2.28-7build1 [54.1 kB]
415s Get:165 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB]
415s Get:166 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu1 [185 kB]
415s Get:167 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB]
415s Get:168 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-0ubuntu1 [67.5 kB]
415s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.2-1 [28.9 MB]
416s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB]
416s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B]
416s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB]
416s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
416s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB]
416s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB]
416s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB]
417s Get:177 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.3-1 [189 kB]
417s Get:178 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB]
417s Get:179 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB]
417s Get:180 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB]
417s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.2-1 [4340 B]
417s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
417s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB]
417s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bdsmatrix amd64 1.3-7-1 [299 kB]
417s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.4-1 [1708 kB]
417s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB]
417s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB]
417s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB]
417s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB]
417s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
417s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.8.9+dfsg-1 [445 kB]
417s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.3-1 [1348 kB]
417s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB]
417s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
417s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB]
417s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB]
417s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.4+dfsg-1 [245 kB]
417s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB]
417s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB]
417s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB]
417s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.7.0+dfsg-1 [4255 kB]
417s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-63-1 [1114 kB]
418s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB]
418s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB]
418s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-e1071 amd64 1.7-16-1 [565 kB]
418s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernsmooth amd64 2.23-26-1 [94.5 kB]
418s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-classint amd64 0.4-10+dfsg-1 [106 kB]
418s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
418s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.13-1-1 [1993 kB]
418s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-collapse amd64 2.0.16-1 [3351 kB]
418s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB]
418s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB]
418s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB]
418s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.0-1 [111 kB]
418s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB]
418s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-foreign amd64 0.8.87-1 [245 kB]
418s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formula all 1.2-5-1 [158 kB]
418s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB]
418s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.49+dfsg-1 [545 kB]
418s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB]
418s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB]
418s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
418s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.0+dfsg-1 [287 kB]
418s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB]
418s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-intervals amd64 0.15.5-1 [602 kB]
418s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isocodes all 2024.02.12-1 [312 kB]
418s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB]
418s Get:228 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
419s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB]
419s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB]
419s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-zoo amd64 1.8-12-2 [984 kB]
419s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lmtest amd64 0.9.40-1 [396 kB]
419s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-maps amd64 3.4.2-1 [2359 kB]
419s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mapdata amd64 2.3.1-1 [23.5 MB]
419s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-markdown all 1.12+dfsg-2 [179 kB]
419s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-misctools all 0.6-28-1 [99.9 kB]
419s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sandwich all 3.1-1-1 [1483 kB]
419s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-maxlik all 1.5-2.1-1 [1083 kB]
419s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.166-1 [2314 kB]
419s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rbibutils amd64 2.3-1 [1023 kB]
419s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rdpack all 2.6.2-1 [757 kB]
419s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plm all 2.6-4-1 [2161 kB]
420s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sp amd64 1:2.1-4+dfsg-1 [1472 kB]
420s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-terra amd64 1.7-78-1build1 [3955 kB]
420s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-raster amd64 3.6-30-1 [3145 kB]
420s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
420s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.53-1 [145 kB]
420s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB]
420s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB]
420s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB]
420s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
420s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
420s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.9.1+dfsg-1 [3111 kB]
420s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.28+dfsg-1 [1501 kB]
420s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rpostgresql amd64 0.7-7+dfsg-1 [365 kB]
420s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-wk amd64 0.9.4-1 [1791 kB]
420s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-s2 amd64 1.1.7-1 [2023 kB]
420s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-units amd64 0.8-5+dfsg-1 [275 kB]
420s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sf amd64 1.0-17+dfsg-1build1 [3297 kB]
420s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xts amd64 0.14.0-1 [760 kB]
420s Get:261 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-spacetime all 1.3-2-1 [2776 kB]
421s Preconfiguring packages ...
421s Fetched 311 MB in 11s (27.9 MB/s)
421s Selecting previously unselected package libisl23:amd64.
421s (Reading database ... 
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(Reading database ... 75820 files and directories currently installed.)
421s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ...
421s Unpacking libisl23:amd64 (0.27-1) ...
421s Selecting previously unselected package libmpc3:amd64.
421s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ...
421s Unpacking libmpc3:amd64 (1.3.1-1build2) ...
421s Selecting previously unselected package cpp-14-x86-64-linux-gnu.
421s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-12ubuntu1_amd64.deb ...
421s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-12ubuntu1) ...
421s Selecting previously unselected package cpp-14.
421s Preparing to unpack .../003-cpp-14_14.2.0-12ubuntu1_amd64.deb ...
421s Unpacking cpp-14 (14.2.0-12ubuntu1) ...
421s Selecting previously unselected package cpp-x86-64-linux-gnu.
421s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ...
421s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ...
421s Selecting previously unselected package cpp.
421s Preparing to unpack .../005-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ...
421s Unpacking cpp (4:14.1.0-2ubuntu1) ...
421s Selecting previously unselected package libcc1-0:amd64.
421s Preparing to unpack .../006-libcc1-0_14.2.0-12ubuntu1_amd64.deb ...
421s Unpacking libcc1-0:amd64 (14.2.0-12ubuntu1) ...
421s Selecting previously unselected package libgomp1:amd64.
421s Preparing to unpack .../007-libgomp1_14.2.0-12ubuntu1_amd64.deb ...
421s Unpacking libgomp1:amd64 (14.2.0-12ubuntu1) ...
421s Selecting previously unselected package libitm1:amd64.
421s Preparing to unpack .../008-libitm1_14.2.0-12ubuntu1_amd64.deb ...
421s Unpacking libitm1:amd64 (14.2.0-12ubuntu1) ...
422s Selecting previously unselected package libasan8:amd64.
422s Preparing to unpack .../009-libasan8_14.2.0-12ubuntu1_amd64.deb ...
422s Unpacking libasan8:amd64 (14.2.0-12ubuntu1) ...
422s Selecting previously unselected package liblsan0:amd64.
422s Preparing to unpack .../010-liblsan0_14.2.0-12ubuntu1_amd64.deb ...
422s Unpacking liblsan0:amd64 (14.2.0-12ubuntu1) ...
422s Selecting previously unselected package libtsan2:amd64.
422s Preparing to unpack .../011-libtsan2_14.2.0-12ubuntu1_amd64.deb ...
422s Unpacking libtsan2:amd64 (14.2.0-12ubuntu1) ...
422s Selecting previously unselected package libubsan1:amd64.
422s Preparing to unpack .../012-libubsan1_14.2.0-12ubuntu1_amd64.deb ...
422s Unpacking libubsan1:amd64 (14.2.0-12ubuntu1) ...
422s Selecting previously unselected package libhwasan0:amd64.
422s Preparing to unpack .../013-libhwasan0_14.2.0-12ubuntu1_amd64.deb ...
422s Unpacking libhwasan0:amd64 (14.2.0-12ubuntu1) ...
422s Selecting previously unselected package libquadmath0:amd64.
422s Preparing to unpack .../014-libquadmath0_14.2.0-12ubuntu1_amd64.deb ...
422s Unpacking libquadmath0:amd64 (14.2.0-12ubuntu1) ...
422s Selecting previously unselected package libgcc-14-dev:amd64.
422s Preparing to unpack .../015-libgcc-14-dev_14.2.0-12ubuntu1_amd64.deb ...
422s Unpacking libgcc-14-dev:amd64 (14.2.0-12ubuntu1) ...
422s Selecting previously unselected package gcc-14-x86-64-linux-gnu.
422s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-12ubuntu1_amd64.deb ...
422s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-12ubuntu1) ...
422s Selecting previously unselected package gcc-14.
422s Preparing to unpack .../017-gcc-14_14.2.0-12ubuntu1_amd64.deb ...
422s Unpacking gcc-14 (14.2.0-12ubuntu1) ...
422s Selecting previously unselected package gcc-x86-64-linux-gnu.
422s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ...
422s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ...
422s Selecting previously unselected package gcc.
422s Preparing to unpack .../019-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ...
422s Unpacking gcc (4:14.1.0-2ubuntu1) ...
422s Selecting previously unselected package libstdc++-14-dev:amd64.
422s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-12ubuntu1_amd64.deb ...
422s Unpacking libstdc++-14-dev:amd64 (14.2.0-12ubuntu1) ...
422s Selecting previously unselected package g++-14-x86-64-linux-gnu.
422s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-12ubuntu1_amd64.deb ...
422s Unpacking g++-14-x86-64-linux-gnu (14.2.0-12ubuntu1) ...
423s Selecting previously unselected package g++-14.
423s Preparing to unpack .../022-g++-14_14.2.0-12ubuntu1_amd64.deb ...
423s Unpacking g++-14 (14.2.0-12ubuntu1) ...
423s Selecting previously unselected package g++-x86-64-linux-gnu.
423s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ...
423s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ...
423s Selecting previously unselected package g++.
423s Preparing to unpack .../024-g++_4%3a14.1.0-2ubuntu1_amd64.deb ...
423s Unpacking g++ (4:14.1.0-2ubuntu1) ...
423s Selecting previously unselected package build-essential.
423s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ...
423s Unpacking build-essential (12.10ubuntu1) ...
423s Selecting previously unselected package dctrl-tools.
423s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ...
423s Unpacking dctrl-tools (2.24-3build3) ...
423s Selecting previously unselected package fonts-dejavu-mono.
423s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ...
423s Unpacking fonts-dejavu-mono (2.37-8) ...
423s Selecting previously unselected package fonts-dejavu-core.
423s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ...
423s Unpacking fonts-dejavu-core (2.37-8) ...
423s Selecting previously unselected package fontconfig-config.
423s Preparing to unpack .../029-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ...
423s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ...
423s Selecting previously unselected package libfontconfig1:amd64.
423s Preparing to unpack .../030-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ...
423s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ...
423s Selecting previously unselected package fontconfig.
423s Preparing to unpack .../031-fontconfig_2.15.0-1.1ubuntu2_amd64.deb ...
423s Unpacking fontconfig (2.15.0-1.1ubuntu2) ...
423s Selecting previously unselected package fonts-font-awesome.
423s Preparing to unpack .../032-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
423s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
423s Selecting previously unselected package fonts-glyphicons-halflings.
423s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
423s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
423s Selecting previously unselected package fonts-mathjax.
423s Preparing to unpack .../034-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
423s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
423s Selecting previously unselected package gdal-data.
423s Preparing to unpack .../035-gdal-data_3.10.0+dfsg-1_all.deb ...
423s Unpacking gdal-data (3.10.0+dfsg-1) ...
423s Selecting previously unselected package gdal-plugins:amd64.
423s Preparing to unpack .../036-gdal-plugins_3.10.0+dfsg-1_amd64.deb ...
423s Unpacking gdal-plugins:amd64 (3.10.0+dfsg-1) ...
423s Selecting previously unselected package libgfortran5:amd64.
423s Preparing to unpack .../037-libgfortran5_14.2.0-12ubuntu1_amd64.deb ...
423s Unpacking libgfortran5:amd64 (14.2.0-12ubuntu1) ...
423s Selecting previously unselected package libgfortran-14-dev:amd64.
423s Preparing to unpack .../038-libgfortran-14-dev_14.2.0-12ubuntu1_amd64.deb ...
423s Unpacking libgfortran-14-dev:amd64 (14.2.0-12ubuntu1) ...
423s Selecting previously unselected package gfortran-14-x86-64-linux-gnu.
423s Preparing to unpack .../039-gfortran-14-x86-64-linux-gnu_14.2.0-12ubuntu1_amd64.deb ...
423s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-12ubuntu1) ...
424s Selecting previously unselected package gfortran-14.
424s Preparing to unpack .../040-gfortran-14_14.2.0-12ubuntu1_amd64.deb ...
424s Unpacking gfortran-14 (14.2.0-12ubuntu1) ...
424s Selecting previously unselected package gfortran-x86-64-linux-gnu.
424s Preparing to unpack .../041-gfortran-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ...
424s Unpacking gfortran-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ...
424s Selecting previously unselected package gfortran.
424s Preparing to unpack .../042-gfortran_4%3a14.1.0-2ubuntu1_amd64.deb ...
424s Unpacking gfortran (4:14.1.0-2ubuntu1) ...
424s Selecting previously unselected package icu-devtools.
424s Preparing to unpack .../043-icu-devtools_76.1-1ubuntu2_amd64.deb ...
424s Unpacking icu-devtools (76.1-1ubuntu2) ...
424s Selecting previously unselected package javascript-common.
424s Preparing to unpack .../044-javascript-common_11+nmu1_all.deb ...
424s Unpacking javascript-common (11+nmu1) ...
424s Selecting previously unselected package libabsl20230802:amd64.
424s Preparing to unpack .../045-libabsl20230802_20230802.1-4ubuntu2_amd64.deb ...
424s Unpacking libabsl20230802:amd64 (20230802.1-4ubuntu2) ...
424s Selecting previously unselected package libaec0:amd64.
424s Preparing to unpack .../046-libaec0_1.1.3-1_amd64.deb ...
424s Unpacking libaec0:amd64 (1.1.3-1) ...
424s Selecting previously unselected package libaom3:amd64.
424s Preparing to unpack .../047-libaom3_3.11.0-1_amd64.deb ...
424s Unpacking libaom3:amd64 (3.11.0-1) ...
424s Selecting previously unselected package libblas3:amd64.
424s Preparing to unpack .../048-libblas3_3.12.0-4_amd64.deb ...
424s Unpacking libblas3:amd64 (3.12.0-4) ...
424s Selecting previously unselected package liblapack3:amd64.
424s Preparing to unpack .../049-liblapack3_3.12.0-4_amd64.deb ...
424s Unpacking liblapack3:amd64 (3.12.0-4) ...
424s Selecting previously unselected package libarpack2t64:amd64.
424s Preparing to unpack .../050-libarpack2t64_3.9.1-4_amd64.deb ...
424s Unpacking libarpack2t64:amd64 (3.9.1-4) ...
424s Selecting previously unselected package libarmadillo14.
424s Preparing to unpack .../051-libarmadillo14_1%3a14.2.1+dfsg-1_amd64.deb ...
424s Unpacking libarmadillo14 (1:14.2.1+dfsg-1) ...
424s Selecting previously unselected package libdav1d7:amd64.
424s Preparing to unpack .../052-libdav1d7_1.5.0-1_amd64.deb ...
424s Unpacking libdav1d7:amd64 (1.5.0-1) ...
424s Selecting previously unselected package libgav1-1:amd64.
424s Preparing to unpack .../053-libgav1-1_0.19.0-3_amd64.deb ...
424s Unpacking libgav1-1:amd64 (0.19.0-3) ...
424s Selecting previously unselected package librav1e0.7:amd64.
424s Preparing to unpack .../054-librav1e0.7_0.7.1-9_amd64.deb ...
424s Unpacking librav1e0.7:amd64 (0.7.1-9) ...
424s Selecting previously unselected package libsvtav1enc2:amd64.
424s Preparing to unpack .../055-libsvtav1enc2_2.3.0+dfsg-1_amd64.deb ...
424s Unpacking libsvtav1enc2:amd64 (2.3.0+dfsg-1) ...
424s Selecting previously unselected package libjpeg-turbo8:amd64.
424s Preparing to unpack .../056-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ...
424s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ...
424s Selecting previously unselected package libjpeg8:amd64.
424s Preparing to unpack .../057-libjpeg8_8c-2ubuntu11_amd64.deb ...
424s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ...
424s Selecting previously unselected package libyuv0:amd64.
424s Preparing to unpack .../058-libyuv0_0.0.1899.20250103-1_amd64.deb ...
424s Unpacking libyuv0:amd64 (0.0.1899.20250103-1) ...
424s Selecting previously unselected package libavif16:amd64.
424s Preparing to unpack .../059-libavif16_1.1.1-1ubuntu1_amd64.deb ...
424s Unpacking libavif16:amd64 (1.1.1-1ubuntu1) ...
424s Selecting previously unselected package libblas-dev:amd64.
424s Preparing to unpack .../060-libblas-dev_3.12.0-4_amd64.deb ...
424s Unpacking libblas-dev:amd64 (3.12.0-4) ...
424s Selecting previously unselected package libsnappy1v5:amd64.
424s Preparing to unpack .../061-libsnappy1v5_1.2.1-1_amd64.deb ...
424s Unpacking libsnappy1v5:amd64 (1.2.1-1) ...
424s Selecting previously unselected package libblosc1:amd64.
424s Preparing to unpack .../062-libblosc1_1.21.5+ds-1build1_amd64.deb ...
424s Unpacking libblosc1:amd64 (1.21.5+ds-1build1) ...
424s Selecting previously unselected package libbz2-dev:amd64.
424s Preparing to unpack .../063-libbz2-dev_1.0.8-6_amd64.deb ...
424s Unpacking libbz2-dev:amd64 (1.0.8-6) ...
424s Selecting previously unselected package libpixman-1-0:amd64.
424s Preparing to unpack .../064-libpixman-1-0_0.44.0-3_amd64.deb ...
424s Unpacking libpixman-1-0:amd64 (0.44.0-3) ...
424s Selecting previously unselected package libxcb-render0:amd64.
424s Preparing to unpack .../065-libxcb-render0_1.17.0-2_amd64.deb ...
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425s Selecting previously unselected package libhdf5-hl-100t64:amd64.
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425s Selecting previously unselected package libodbc2:amd64.
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425s Selecting previously unselected package libodbcinst2:amd64.
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425s Selecting previously unselected package libogdi4.1:amd64.
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426s Selecting previously unselected package libopenjp2-7:amd64.
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426s Selecting previously unselected package libpoppler140:amd64.
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426s Selecting previously unselected package libspatialite8t64:amd64.
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426s Selecting previously unselected package libxerces-c3.2t64:amd64.
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426s Selecting previously unselected package libgdal36:amd64.
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426s Selecting previously unselected package libgraphite2-3:amd64.
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426s Selecting previously unselected package libharfbuzz0b:amd64.
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426s Selecting previously unselected package libice6:amd64.
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426s Selecting previously unselected package libjpeg-turbo8-dev:amd64.
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426s Selecting previously unselected package libjs-d3.
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427s Selecting previously unselected package libjs-highlight.js.
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427s Selecting previously unselected package liblapack-dev:amd64.
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427s Selecting previously unselected package liblua5.4-0:amd64.
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427s Selecting previously unselected package libpango-1.0-0:amd64.
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427s Selecting previously unselected package libpangoft2-1.0-0:amd64.
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427s Selecting previously unselected package libpangocairo-1.0-0:amd64.
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427s Selecting previously unselected package zlib1g-dev:amd64.
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427s Selecting previously unselected package libpng-dev:amd64.
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427s Selecting previously unselected package libreadline-dev:amd64.
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427s Selecting previously unselected package libxft2:amd64.
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427s Selecting previously unselected package libxss1:amd64.
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427s Selecting previously unselected package libtk8.6:amd64.
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428s Selecting previously unselected package libudunits2-0.
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428s Selecting previously unselected package libxt6t64:amd64.
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428s Selecting previously unselected package xdg-utils.
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428s Unpacking xdg-utils (1.2.1-0ubuntu1) ...
428s Selecting previously unselected package r-base-core.
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428s Unpacking r-base-core (4.4.2-1) ...
428s Selecting previously unselected package r-cran-littler.
428s Preparing to unpack .../169-r-cran-littler_0.3.20-2_amd64.deb ...
428s Unpacking r-cran-littler (0.3.20-2) ...
428s Selecting previously unselected package littler.
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428s Unpacking littler (0.3.20-2) ...
428s Selecting previously unselected package node-bootstrap-sass.
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428s Selecting previously unselected package node-html5shiv.
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428s Unpacking node-html5shiv (3.7.3+dfsg-5) ...
428s Selecting previously unselected package node-normalize.css.
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428s Selecting previously unselected package pandoc-data.
428s Preparing to unpack .../174-pandoc-data_3.1.11.1-3build1_all.deb ...
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428s Selecting previously unselected package pandoc.
428s Preparing to unpack .../175-pandoc_3.1.11.1+ds-2_amd64.deb ...
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429s Selecting previously unselected package liblzma-dev:amd64.
429s Preparing to unpack .../176-liblzma-dev_5.6.3-1_amd64.deb ...
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429s Selecting previously unselected package pkgconf-bin.
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429s Unpacking pkgconf-bin (1.8.1-4) ...
429s Selecting previously unselected package pkgconf:amd64.
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429s Unpacking pkgconf:amd64 (1.8.1-4) ...
429s Selecting previously unselected package libtirpc-dev:amd64.
429s Preparing to unpack .../179-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ...
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429s Selecting previously unselected package r-base-dev.
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429s Selecting previously unselected package pkg-r-autopkgtest.
429s Preparing to unpack .../181-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
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429s Selecting previously unselected package r-cran-base64enc.
429s Preparing to unpack .../182-r-cran-base64enc_0.1-3-3_amd64.deb ...
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429s Selecting previously unselected package r-cran-bdsmatrix.
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429s Selecting previously unselected package r-cran-rlang.
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429s Selecting previously unselected package r-cran-fastmap.
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429s Selecting previously unselected package r-cran-cachem.
429s Preparing to unpack .../186-r-cran-cachem_1.1.0-1_amd64.deb ...
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429s Selecting previously unselected package r-cran-digest.
429s Preparing to unpack .../187-r-cran-digest_0.6.37-1_amd64.deb ...
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429s Selecting previously unselected package r-cran-htmltools.
429s Preparing to unpack .../188-r-cran-htmltools_0.5.8.1-1_amd64.deb ...
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429s Selecting previously unselected package r-cran-jquerylib.
429s Preparing to unpack .../189-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ...
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429s Selecting previously unselected package r-cran-jsonlite.
429s Preparing to unpack .../190-r-cran-jsonlite_1.8.9+dfsg-1_amd64.deb ...
429s Unpacking r-cran-jsonlite (1.8.9+dfsg-1) ...
429s Selecting previously unselected package r-cran-cli.
429s Preparing to unpack .../191-r-cran-cli_3.6.3-1_amd64.deb ...
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429s Selecting previously unselected package r-cran-glue.
429s Preparing to unpack .../192-r-cran-glue_1.8.0-1_amd64.deb ...
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429s Selecting previously unselected package r-cran-lifecycle.
429s Preparing to unpack .../193-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
429s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
429s Selecting previously unselected package r-cran-memoise.
429s Preparing to unpack .../194-r-cran-memoise_2.0.1-1_all.deb ...
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429s Selecting previously unselected package r-cran-mime.
429s Preparing to unpack .../195-r-cran-mime_0.12-2_amd64.deb ...
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429s Selecting previously unselected package r-cran-fs.
429s Preparing to unpack .../196-r-cran-fs_1.6.4+dfsg-1_amd64.deb ...
429s Unpacking r-cran-fs (1.6.4+dfsg-1) ...
429s Selecting previously unselected package r-cran-r6.
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429s Selecting previously unselected package r-cran-rappdirs.
429s Preparing to unpack .../198-r-cran-rappdirs_0.3.3-1_amd64.deb ...
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429s Selecting previously unselected package r-cran-sass.
429s Preparing to unpack .../199-r-cran-sass_0.4.9+dfsg-1_amd64.deb ...
429s Unpacking r-cran-sass (0.4.9+dfsg-1) ...
429s Selecting previously unselected package r-cran-bslib.
429s Preparing to unpack .../200-r-cran-bslib_0.7.0+dfsg-1_all.deb ...
429s Unpacking r-cran-bslib (0.7.0+dfsg-1) ...
430s Selecting previously unselected package r-cran-mass.
430s Preparing to unpack .../201-r-cran-mass_7.3-63-1_amd64.deb ...
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430s Selecting previously unselected package r-cran-class.
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430s Selecting previously unselected package r-cran-proxy.
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430s Selecting previously unselected package r-cran-e1071.
430s Preparing to unpack .../204-r-cran-e1071_1.7-16-1_amd64.deb ...
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430s Selecting previously unselected package r-cran-kernsmooth.
430s Preparing to unpack .../205-r-cran-kernsmooth_2.23-26-1_amd64.deb ...
430s Unpacking r-cran-kernsmooth (2.23-26-1) ...
430s Selecting previously unselected package r-cran-classint.
430s Preparing to unpack .../206-r-cran-classint_0.4-10+dfsg-1_amd64.deb ...
430s Unpacking r-cran-classint (0.4-10+dfsg-1) ...
430s Selecting previously unselected package r-cran-pkgkitten.
430s Preparing to unpack .../207-r-cran-pkgkitten_0.2.4-1_all.deb ...
430s Unpacking r-cran-pkgkitten (0.2.4-1) ...
430s Selecting previously unselected package r-cran-rcpp.
430s Preparing to unpack .../208-r-cran-rcpp_1.0.13-1-1_amd64.deb ...
430s Unpacking r-cran-rcpp (1.0.13-1-1) ...
430s Selecting previously unselected package r-cran-collapse.
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430s Selecting previously unselected package r-cran-commonmark.
430s Preparing to unpack .../210-r-cran-commonmark_1.9.2-2_amd64.deb ...
430s Unpacking r-cran-commonmark (1.9.2-2) ...
430s Selecting previously unselected package r-cran-crayon.
430s Preparing to unpack .../211-r-cran-crayon_1.5.2-1_all.deb ...
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430s Selecting previously unselected package r-cran-dbi.
430s Preparing to unpack .../212-r-cran-dbi_1.2.3-1_all.deb ...
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430s Selecting previously unselected package r-cran-evaluate.
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430s Selecting previously unselected package r-cran-fontawesome.
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430s Selecting previously unselected package r-cran-foreign.
430s Preparing to unpack .../215-r-cran-foreign_0.8.87-1_amd64.deb ...
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430s Selecting previously unselected package r-cran-formula.
430s Preparing to unpack .../216-r-cran-formula_1.2-5-1_all.deb ...
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430s Selecting previously unselected package r-cran-generics.
430s Preparing to unpack .../217-r-cran-generics_0.1.3-1_all.deb ...
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430s Selecting previously unselected package r-cran-xfun.
430s Preparing to unpack .../218-r-cran-xfun_0.49+dfsg-1_amd64.deb ...
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430s Selecting previously unselected package r-cran-highr.
430s Preparing to unpack .../219-r-cran-highr_0.11+dfsg-1_all.deb ...
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430s Selecting previously unselected package r-cran-later.
430s Preparing to unpack .../220-r-cran-later_1.3.2+dfsg-1_amd64.deb ...
430s Unpacking r-cran-later (1.3.2+dfsg-1) ...
430s Selecting previously unselected package r-cran-magrittr.
430s Preparing to unpack .../221-r-cran-magrittr_2.0.3-1_amd64.deb ...
430s Unpacking r-cran-magrittr (2.0.3-1) ...
430s Selecting previously unselected package r-cran-promises.
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430s Unpacking r-cran-promises (1.3.0+dfsg-1) ...
430s Selecting previously unselected package r-cran-httpuv.
430s Preparing to unpack .../223-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ...
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430s Selecting previously unselected package r-cran-intervals.
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430s Selecting previously unselected package r-cran-isocodes.
430s Preparing to unpack .../225-r-cran-isocodes_2024.02.12-1_all.deb ...
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430s Selecting previously unselected package r-cran-yaml.
430s Preparing to unpack .../226-r-cran-yaml_2.3.10-1_amd64.deb ...
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430s Selecting previously unselected package libjs-mathjax.
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431s Selecting previously unselected package r-cran-knitr.
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431s Selecting previously unselected package r-cran-lattice.
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431s Selecting previously unselected package r-cran-zoo.
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431s Selecting previously unselected package r-cran-lmtest.
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431s Selecting previously unselected package r-cran-maps.
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431s Selecting previously unselected package r-cran-mapdata.
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431s Selecting previously unselected package r-cran-markdown.
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431s Selecting previously unselected package r-cran-misctools.
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431s Selecting previously unselected package r-cran-sandwich.
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431s Selecting previously unselected package r-cran-maxlik.
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432s Selecting previously unselected package r-cran-nlme.
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432s Selecting previously unselected package r-cran-rbibutils.
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432s Selecting previously unselected package r-cran-rdpack.
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432s Selecting previously unselected package r-cran-terra.
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432s Selecting previously unselected package r-cran-rcolorbrewer.
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432s Selecting previously unselected package r-cran-tinytex.
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432s Selecting previously unselected package r-cran-xtable.
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432s Selecting previously unselected package r-cran-withr.
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432s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
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432s Selecting previously unselected package r-cran-shiny.
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432s Selecting previously unselected package r-cran-rmarkdown.
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432s Selecting previously unselected package r-cran-rpostgresql.
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433s Setting up libjs-json (0~20221030+~1.0.8-1) ...
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433s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ...
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433s Setting up libsharpyuv0:amd64 (1.4.0-0.1) ...
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433s Setting up libaom3:amd64 (3.11.0-1) ...
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433s update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode
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433s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ...
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433s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu3) ...
433s Setting up libaec0:amd64 (1.1.3-1) ...
433s Setting up gdal-data (3.10.0+dfsg-1) ...
433s Setting up libsnappy1v5:amd64 (1.2.1-1) ...
433s Setting up libjs-es5-shim (4.6.7-2) ...
433s Setting up zip (3.0-14ubuntu1) ...
433s Setting up libpcre2-32-0:amd64 (10.42-4ubuntu3) ...
433s Setting up libblas3:amd64 (3.12.0-4) ...
433s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
433s Setting up libtirpc-dev:amd64 (1.3.4+ds-1.3) ...
433s Setting up libpkgconf3:amd64 (1.8.1-4) ...
433s Setting up libcfitsio10t64:amd64 (4.5.0-5) ...
433s Setting up libsvtav1enc2:amd64 (2.3.0+dfsg-1) ...
433s Setting up libquadmath0:amd64 (14.2.0-12ubuntu1) ...
433s Setting up libjs-d3 (3.5.17-4) ...
433s Setting up fonts-dejavu-mono (2.37-8) ...
433s Setting up libmpc3:amd64 (1.3.1-1build2) ...
433s Setting up libtcl8.6:amd64 (8.6.15+dfsg-2) ...
433s Setting up icu-devtools (76.1-1ubuntu2) ...
433s Setting up fonts-dejavu-core (2.37-8) ...
433s Setting up unixodbc-common (2.3.12-1ubuntu1) ...
433s Setting up pkgconf-bin (1.8.1-4) ...
433s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ...
433s Setting up libltdl7:amd64 (2.4.7-8) ...
433s Setting up libgfortran5:amd64 (14.2.0-12ubuntu1) ...
433s Setting up libwebp7:amd64 (1.4.0-0.1) ...
433s Setting up liblzma-dev:amd64 (5.6.3-1) ...
433s Setting up libubsan1:amd64 (14.2.0-12ubuntu1) ...
433s Setting up libgif7:amd64 (5.2.2-1ubuntu1) ...
433s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
433s Setting up libodbc2:amd64 (2.3.12-1ubuntu1) ...
433s Setting up liburiparser1:amd64 (0.9.8+dfsg-2) ...
433s Setting up libpcre2-posix3:amd64 (10.42-4ubuntu3) ...
433s Setting up libfyba0t64:amd64 (4.1.1-11build1) ...
433s Setting up libudunits2-data (2.2.28-7build1) ...
433s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ...
433s Setting up libdav1d7:amd64 (1.5.0-1) ...
433s Setting up libminizip1t64:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
433s Setting up libhwasan0:amd64 (14.2.0-12ubuntu1) ...
433s Setting up librav1e0.7:amd64 (0.7.1-9) ...
433s Setting up libasan8:amd64 (14.2.0-12ubuntu1) ...
433s Setting up libblosc1:amd64 (1.21.5+ds-1build1) ...
433s Setting up liblua5.4-0:amd64 (5.4.7-1) ...
433s Setting up libopenjp2-7:amd64 (2.5.0-2ubuntu2) ...
433s Setting up libharfbuzz0b:amd64 (10.1.0-1) ...
433s Setting up libthai-data (0.1.29-2build1) ...
433s Setting up node-bootstrap-sass (3.4.3-2) ...
433s Setting up libabsl20230802:amd64 (20230802.1-4ubuntu2) ...
433s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ...
433s Setting up libxss1:amd64 (1:1.2.3-1build3) ...
433s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ...
433s Setting up libpaper2:amd64 (2.2.5-0.3) ...
433s Setting up pandoc-data (3.1.11.1-3build1) ...
433s Setting up libtsan2:amd64 (14.2.0-12ubuntu1) ...
433s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
433s Setting up libisl23:amd64 (0.27-1) ...
433s Setting up libde265-0:amd64 (1.0.15-1build4) ...
433s Setting up libkmlbase1t64:amd64 (1.3.0-12build1) ...
433s Setting up libdeflate-dev:amd64 (1.22-1) ...
433s Setting up node-normalize.css (8.0.1-5) ...
433s Setting up libicu-dev:amd64 (76.1-1ubuntu2) ...
433s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
433s Setting up xdg-utils (1.2.1-0ubuntu1) ...
433s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
433s Setting up libcc1-0:amd64 (14.2.0-12ubuntu1) ...
433s Setting up liblsan0:amd64 (14.2.0-12ubuntu1) ...
433s Setting up libblas-dev:amd64 (3.12.0-4) ...
433s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
433s Setting up libsz2:amd64 (1.1.3-1) ...
433s Setting up dctrl-tools (2.24-3build3) ...
433s Setting up libjs-bootstrap (3.4.1+dfsg-3) ...
433s Setting up libitm1:amd64 (14.2.0-12ubuntu1) ...
433s Setting up gdal-plugins:amd64 (3.10.0+dfsg-1) ...
433s Setting up libbz2-dev:amd64 (1.0.8-6) ...
433s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ...
433s Setting up libjpeg8:amd64 (8c-2ubuntu11) ...
433s Setting up libice6:amd64 (2:1.1.1-1) ...
433s Setting up libodbcinst2:amd64 (2.3.12-1ubuntu1) ...
433s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ...
433s Setting up liblapack3:amd64 (3.12.0-4) ...
433s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
433s Setting up libudunits2-0 (2.2.28-7build1) ...
433s Setting up libarpack2t64:amd64 (3.9.1-4) ...
433s Setting up libpcre2-dev:amd64 (10.42-4ubuntu3) ...
433s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ...
433s Setting up libgeos-c1t64:amd64 (3.13.0-1) ...
433s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
433s Setting up libpng-dev:amd64 (1.6.44-3) ...
433s Setting up libpaper-utils (2.2.5-0.3) ...
433s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ...
433s Setting up pkgconf:amd64 (1.8.1-4) ...
433s Setting up libkmldom1t64:amd64 (1.3.0-12build1) ...
433s Setting up libthai0:amd64 (0.1.29-2build1) ...
433s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
433s Setting up pandoc (3.1.11.1+ds-2) ...
433s Setting up liblapack-dev:amd64 (3.12.0-4) ...
433s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
433s Setting up cpp-14-x86-64-linux-gnu (14.2.0-12ubuntu1) ...
433s Setting up libgav1-1:amd64 (0.19.0-3) ...
433s Setting up cpp-14 (14.2.0-12ubuntu1) ...
433s Setting up libhdf4-0-alt:amd64 (4.3.0-1) ...
433s Setting up librttopo1:amd64 (1.1.0-3build2) ...
433s Setting up libfreexl1:amd64 (2.0.0-1build2) ...
433s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ...
433s Setting up libarmadillo14 (1:14.2.1+dfsg-1) ...
433s Setting up libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ...
433s Setting up libgcc-14-dev:amd64 (14.2.0-12ubuntu1) ...
433s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ...
433s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-5ubuntu1) ...
433s Setting up libstdc++-14-dev:amd64 (14.2.0-12ubuntu1) ...
433s Setting up libyuv0:amd64 (0.0.1899.20250103-1) ...
433s Setting up libsm6:amd64 (2:1.2.4-1) ...
433s Setting up cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ...
433s Setting up libgfortran-14-dev:amd64 (14.2.0-12ubuntu1) ...
433s Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-5ubuntu1) ...
433s Setting up fontconfig (2.15.0-1.1ubuntu2) ...
435s Regenerating fonts cache... done.
435s Setting up libavif16:amd64 (1.1.1-1ubuntu1) ...
435s Setting up libnetcdf19t64:amd64 (1:4.9.2-6ubuntu1) ...
435s Setting up libxft2:amd64 (2.3.6-1build1) ...
435s Setting up libproj25:amd64 (9.5.1-1) ...
436s Setting up libtk8.6:amd64 (8.6.15-1) ...
436s Setting up libpango-1.0-0:amd64 (1.55.0+ds-3) ...
436s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ...
436s Setting up libkmlengine1t64:amd64 (1.3.0-12build1) ...
436s Setting up libcairo2:amd64 (1.18.2-2) ...
436s Setting up libgeotiff5:amd64 (1.7.3-1) ...
436s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ...
436s Setting up cpp (4:14.1.0-2ubuntu1) ...
436s Setting up libpoppler140:amd64 (24.08.0-3) ...
436s Setting up gcc-14-x86-64-linux-gnu (14.2.0-12ubuntu1) ...
436s Setting up libpangoft2-1.0-0:amd64 (1.55.0+ds-3) ...
436s Setting up libpangocairo-1.0-0:amd64 (1.55.0+ds-3) ...
436s Setting up libspatialite8t64:amd64 (5.1.0-3build1) ...
436s Setting up gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ...
436s Setting up gcc-14 (14.2.0-12ubuntu1) ...
436s Setting up gfortran-14-x86-64-linux-gnu (14.2.0-12ubuntu1) ...
436s Setting up r-base-core (4.4.2-1) ...
436s Creating config file /etc/R/Renviron with new version
436s Setting up r-cran-crayon (1.5.2-1) ...
436s Setting up r-cran-sourcetools (0.1.7-1-1) ...
436s Setting up r-cran-lattice (0.22-6-1) ...
436s Setting up r-cran-nlme (3.1.166-1) ...
436s Setting up g++-14-x86-64-linux-gnu (14.2.0-12ubuntu1) ...
436s Setting up r-cran-formula (1.2-5-1) ...
436s Setting up r-cran-intervals (0.15.5-1) ...
436s Setting up r-cran-isocodes (2024.02.12-1) ...
436s Setting up g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ...
436s Setting up r-cran-wk (0.9.4-1) ...
436s Setting up r-cran-commonmark (1.9.2-2) ...
436s Setting up g++-14 (14.2.0-12ubuntu1) ...
436s Setting up r-cran-proxy (0.4-27-1) ...
436s Setting up r-cran-r6 (2.5.1-1) ...
436s Setting up r-cran-pkgkitten (0.2.4-1) ...
436s Setting up gfortran-14 (14.2.0-12ubuntu1) ...
436s Setting up r-cran-magrittr (2.0.3-1) ...
436s Setting up r-cran-rappdirs (0.3.3-1) ...
436s Setting up r-cran-littler (0.3.20-2) ...
436s Setting up r-cran-fs (1.6.4+dfsg-1) ...
436s Setting up r-cran-rcpp (1.0.13-1-1) ...
436s Setting up r-cran-maps (3.4.2-1) ...
436s Setting up r-cran-rlang (1.1.4-1) ...
436s Setting up littler (0.3.20-2) ...
436s Setting up r-cran-xfun (0.49+dfsg-1) ...
436s Setting up r-cran-withr (3.0.2+dfsg-1) ...
436s Setting up r-cran-mime (0.12-2) ...
436s Setting up r-cran-generics (0.1.3-1) ...
436s Setting up r-cran-base64enc (0.1-3-3) ...
436s Setting up r-cran-s2 (1.1.7-1) ...
436s Setting up r-cran-digest (0.6.37-1) ...
436s Setting up r-cran-yaml (2.3.10-1) ...
436s Setting up r-cran-evaluate (1.0.0-1) ...
436s Setting up r-cran-dbi (1.2.3-1) ...
436s Setting up r-cran-highr (0.11+dfsg-1) ...
436s Setting up r-cran-mass (7.3-63-1) ...
436s Setting up r-cran-mapdata (2.3.1-1) ...
436s Setting up r-cran-collapse (2.0.16-1) ...
436s Setting up r-cran-bdsmatrix (1.3-7-1) ...
436s Setting up r-cran-glue (1.8.0-1) ...
436s Setting up r-cran-foreign (0.8.87-1) ...
436s Setting up gfortran-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ...
436s Setting up r-cran-xtable (1:1.8-4-2) ...
436s Setting up r-cran-cli (3.6.3-1) ...
436s Setting up r-cran-rbibutils (2.3-1) ...
436s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
436s Setting up gcc (4:14.1.0-2ubuntu1) ...
436s Setting up r-cran-fastmap (1.2.0-1) ...
436s Setting up r-cran-jsonlite (1.8.9+dfsg-1) ...
436s Setting up r-cran-sp (1:2.1-4+dfsg-1) ...
436s Setting up r-cran-markdown (1.12+dfsg-2) ...
436s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
436s Setting up r-cran-zoo (1.8-12-2) ...
436s Setting up r-cran-units (0.8-5+dfsg-1) ...
436s Setting up r-cran-later (1.3.2+dfsg-1) ...
436s Setting up r-cran-htmltools (0.5.8.1-1) ...
436s Setting up r-cran-tinytex (0.53-1) ...
436s Setting up r-cran-kernsmooth (2.23-26-1) ...
436s Setting up r-cran-knitr (1.49+dfsg-1) ...
436s Setting up g++ (4:14.1.0-2ubuntu1) ...
436s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
436s Setting up r-cran-rpostgresql (0.7-7+dfsg-1) ...
436s Setting up r-cran-cachem (1.1.0-1) ...
436s Setting up r-cran-lmtest (0.9.40-1) ...
436s Setting up r-cran-sass (0.4.9+dfsg-1) ...
436s Setting up build-essential (12.10ubuntu1) ...
436s Setting up r-cran-misctools (0.6-28-1) ...
436s Setting up r-cran-class (7.3-23-1) ...
436s Setting up r-cran-sandwich (3.1-1-1) ...
436s Setting up r-cran-fontawesome (0.5.2-1) ...
436s Setting up r-cran-xts (0.14.0-1) ...
436s Setting up r-cran-rdpack (2.6.2-1) ...
436s Setting up gfortran (4:14.1.0-2ubuntu1) ...
436s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
436s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
436s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
436s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
436s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
436s Setting up r-cran-memoise (2.0.1-1) ...
436s Setting up r-cran-promises (1.3.0+dfsg-1) ...
436s Setting up r-cran-e1071 (1.7-16-1) ...
436s Setting up r-cran-maxlik (1.5-2.1-1) ...
436s Setting up r-cran-spacetime (1.3-2-1) ...
436s Setting up r-base-dev (4.4.2-1) ...
436s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
436s Setting up r-cran-plm (2.6-4-1) ...
436s Setting up r-cran-classint (0.4-10+dfsg-1) ...
436s Setting up r-cran-bslib (0.7.0+dfsg-1) ...
436s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
436s Setting up r-cran-shiny (1.9.1+dfsg-1) ...
436s Setting up r-cran-rmarkdown (2.28+dfsg-1) ...
436s Setting up libheif-plugin-aomdec:amd64 (1.19.3-1) ...
436s Setting up libheif1:amd64 (1.19.3-1) ...
436s Setting up libgdal36:amd64 (3.10.0+dfsg-1) ...
436s Setting up r-cran-sf (1.0-17+dfsg-1build1) ...
436s Setting up libheif-plugin-libde265:amd64 (1.19.3-1) ...
436s Setting up r-cran-terra (1.7-78-1build1) ...
436s Setting up r-cran-raster (3.6-30-1) ...
436s Processing triggers for install-info (7.1.1-1) ...
436s Processing triggers for libc-bin (2.40-4ubuntu1) ...
436s Processing triggers for man-db (2.13.0-1) ...
440s autopkgtest [14:48:19]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
440s autopkgtest [14:48:19]: test pkg-r-autopkgtest: [-----------------------
440s Test: Try to load the R library spacetime
440s 
440s R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
440s Copyright (C) 2024 The R Foundation for Statistical Computing
440s Platform: x86_64-pc-linux-gnu
440s 
440s R is free software and comes with ABSOLUTELY NO WARRANTY.
440s You are welcome to redistribute it under certain conditions.
440s Type 'license()' or 'licence()' for distribution details.
440s 
440s R is a collaborative project with many contributors.
440s Type 'contributors()' for more information and
440s 'citation()' on how to cite R or R packages in publications.
440s 
440s Type 'demo()' for some demos, 'help()' for on-line help, or
440s 'help.start()' for an HTML browser interface to help.
440s Type 'q()' to quit R.
440s 
440s > library('spacetime')
440s > 
440s > 
440s Other tests are currently unsupported!
440s They will be progressively added.
441s autopkgtest [14:48:20]: test pkg-r-autopkgtest: -----------------------]
441s pkg-r-autopkgtest    PASS
441s autopkgtest [14:48:20]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
441s autopkgtest [14:48:20]: @@@@@@@@@@@@@@@@@@@@ summary
441s run-unit-test        FAIL non-zero exit status 1
441s pkg-r-autopkgtest    PASS
458s nova [W] Skipping flock for amd64
458s Creating nova instance adt-plucky-amd64-r-cran-spacetime-20250111-132824-juju-7f2275-prod-proposed-migration-environment-20-d091f1d5-e512-48ab-9484-525a0ea59fbc from image adt/ubuntu-plucky-amd64-server-20250111.img (UUID 583b1e24-63f4-4305-9a48-aa6a34658dc0)...
458s nova [W] Timed out waiting for 32d898d6-032a-4066-b4dd-8af208bd2486 to get deleted.
458s nova [W] Skipping flock for amd64
458s Creating nova instance adt-plucky-amd64-r-cran-spacetime-20250111-132824-juju-7f2275-prod-proposed-migration-environment-20-d091f1d5-e512-48ab-9484-525a0ea59fbc from image adt/ubuntu-plucky-amd64-server-20250111.img (UUID 583b1e24-63f4-4305-9a48-aa6a34658dc0)...
458s nova [W] Timed out waiting for f91b8eef-52d4-4dbc-91ec-ca1f15bbf2a6 to get deleted.