0s autopkgtest [22:29:35]: starting date and time: 2025-03-15 22:29:35+0000 0s autopkgtest [22:29:35]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [22:29:35]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.vf9v4nl9/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-sf --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-32.secgroup --name adt-plucky-amd64-r-cran-sf-20250315-222935-juju-7f2275-prod-proposed-migration-environment-20-4d2dcf9e-3538-4704-aa28-77bbce03a0a5 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 46s autopkgtest [22:30:21]: testbed dpkg architecture: amd64 46s autopkgtest [22:30:21]: testbed apt version: 2.9.31ubuntu1 47s autopkgtest [22:30:22]: @@@@@@@@@@@@@@@@@@@@ test bed setup 47s autopkgtest [22:30:22]: testbed release detected to be: None 47s autopkgtest [22:30:22]: updating testbed package index (apt update) 48s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 48s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 48s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 48s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 48s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 48s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 48s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 48s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 48s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 48s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 48s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 48s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 49s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 49s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 49s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 49s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 49s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 49s Fetched 1265 kB in 1s (1409 kB/s) 50s Reading package lists... 51s Reading package lists... 51s Building dependency tree... 51s Reading state information... 51s Calculating upgrade... 52s Calculating upgrade... 52s The following package was automatically installed and is no longer required: 52s libnl-genl-3-200 52s Use 'sudo apt autoremove' to remove it. 52s The following NEW packages will be installed: 52s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 52s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 52s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 52s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 52s The following packages will be upgraded: 52s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 52s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base 52s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools 52s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0 52s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 52s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0 52s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1 52s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64 52s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6 52s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200 52s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib 52s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2 52s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 52s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 52s linux-firmware linux-generic linux-headers-generic linux-headers-virtual 52s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 52s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 52s parted pci.ids pciutils pinentry-curses python-apt-common python3 52s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi 52s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal 52s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13 52s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd 52s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd 52s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail 52s xz-utils 52s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 52s Need to get 829 MB of archives. 52s After this operation, 325 MB of additional disk space will be used. 52s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 52s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 52s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 53s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 53s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 53s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 53s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 53s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 53s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 53s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 53s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 53s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 53s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 53s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 53s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 53s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 53s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 53s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 53s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 53s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 53s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 53s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 53s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 53s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 53s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 53s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 53s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 53s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 53s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 53s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 53s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 53s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 53s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 53s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 53s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 53s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 53s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 53s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 53s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 53s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 53s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 54s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 54s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 54s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 54s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 54s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 54s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 54s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 54s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 54s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 54s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 54s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 54s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 54s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 54s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 54s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 54s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 54s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 54s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 54s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 54s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 54s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 54s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 54s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 54s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 54s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 54s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 54s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 54s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 54s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 54s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 54s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 54s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 54s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 54s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 54s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 54s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 54s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 54s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 54s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 54s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 54s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 54s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 54s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 54s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 54s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 54s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 54s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 54s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 54s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 54s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 54s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 54s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 54s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 54s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 54s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 54s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 54s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 54s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 54s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 54s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 55s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 55s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 55s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 55s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 55s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 55s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 55s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 55s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 79s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 79s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 79s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 79s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 79s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 79s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 79s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 79s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 80s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 81s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 85s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 85s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 85s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 85s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 85s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 85s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 86s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 86s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 86s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 86s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 86s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 86s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 86s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 86s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 86s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 86s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 86s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 86s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 86s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 87s Preconfiguring packages ... 87s Fetched 829 MB in 34s (24.2 MB/s) 87s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 93s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 93s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 93s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 93s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 93s Setting up python3-minimal (3.13.2-2) ... 93s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 93s Preparing to unpack .../0-libsqlite3-0_3.46.1-2_amd64.deb ... 93s Unpacking libsqlite3-0:amd64 (3.46.1-2) over (3.46.1-1) ... 94s Preparing to unpack .../1-python3.13_3.13.2-2_amd64.deb ... 94s Unpacking python3.13 (3.13.2-2) over (3.13.2-1) ... 94s Preparing to unpack .../2-python3.13-minimal_3.13.2-2_amd64.deb ... 94s Unpacking python3.13-minimal (3.13.2-2) over (3.13.2-1) ... 94s Preparing to unpack .../3-libpython3.13-minimal_3.13.2-2_amd64.deb ... 94s Unpacking libpython3.13-minimal:amd64 (3.13.2-2) over (3.13.2-1) ... 94s Preparing to unpack .../4-libpython3.13-stdlib_3.13.2-2_amd64.deb ... 94s Unpacking libpython3.13-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 94s Preparing to unpack .../5-libpython3-stdlib_3.13.2-2_amd64.deb ... 94s Unpacking libpython3-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 94s Preparing to unpack .../6-rsync_3.4.1+ds1-3_amd64.deb ... 94s Unpacking rsync (3.4.1+ds1-3) over (3.4.1-0syncable1) ... 94s Selecting previously unselected package libdebuginfod-common. 94s Preparing to unpack .../7-libdebuginfod-common_0.192-4_all.deb ... 94s Unpacking libdebuginfod-common (0.192-4) ... 94s Preparing to unpack .../8-libsemanage-common_3.7-2.1build1_all.deb ... 94s Unpacking libsemanage-common (3.7-2.1build1) over (3.7-2.1) ... 94s Setting up libsemanage-common (3.7-2.1build1) ... 94s (Reading database ... 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unpack .../29-xz-utils_5.6.4-1_amd64.deb ... 97s Unpacking xz-utils (5.6.4-1) over (5.6.3-1) ... 97s Preparing to unpack .../30-ubuntu-standard_1.549_amd64.deb ... 97s Unpacking ubuntu-standard (1.549) over (1.548) ... 98s Preparing to unpack .../31-libgprofng0_2.44-3ubuntu1_amd64.deb ... 98s Unpacking libgprofng0:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 98s Preparing to unpack .../32-libctf0_2.44-3ubuntu1_amd64.deb ... 98s Unpacking libctf0:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 98s Preparing to unpack .../33-libctf-nobfd0_2.44-3ubuntu1_amd64.deb ... 98s Unpacking libctf-nobfd0:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 98s Preparing to unpack .../34-binutils-x86-64-linux-gnu_2.44-3ubuntu1_amd64.deb ... 98s Unpacking binutils-x86-64-linux-gnu (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 98s Preparing to unpack .../35-libbinutils_2.44-3ubuntu1_amd64.deb ... 98s Unpacking libbinutils:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 98s Preparing to unpack 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unpack .../63-linux-modules-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 103s Unpacking linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 103s Selecting previously unselected package linux-image-6.14.0-10-generic. 103s Preparing to unpack .../64-linux-image-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 103s Unpacking linux-image-6.14.0-10-generic (6.14.0-10.10) ... 103s Selecting previously unselected package linux-modules-extra-6.14.0-10-generic. 103s Preparing to unpack .../65-linux-modules-extra-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 103s Unpacking linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 104s Preparing to unpack .../66-linux-generic_6.14.0-10.10_amd64.deb ... 104s Unpacking linux-generic (6.14.0-10.10) over (6.12.0-16.16+2) ... 104s Preparing to unpack .../67-linux-image-generic_6.14.0-10.10_amd64.deb ... 104s Unpacking linux-image-generic (6.14.0-10.10) over (6.12.0-16.16+2) ... 104s Preparing to unpack .../68-linux-virtual_6.14.0-10.10_amd64.deb ... 104s 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previously unselected package linux-perf. 109s Preparing to unpack .../74-linux-perf_6.14.0-10.10_amd64.deb ... 109s Unpacking linux-perf (6.14.0-10.10) ... 109s Selecting previously unselected package linux-tools-6.14.0-10. 109s Preparing to unpack .../75-linux-tools-6.14.0-10_6.14.0-10.10_amd64.deb ... 109s Unpacking linux-tools-6.14.0-10 (6.14.0-10.10) ... 109s Selecting previously unselected package linux-tools-6.14.0-10-generic. 109s Preparing to unpack .../76-linux-tools-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 109s Unpacking linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 109s Preparing to unpack .../77-pinentry-curses_1.3.1-2ubuntu3_amd64.deb ... 109s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 109s Preparing to unpack .../78-python3-lazr.uri_1.0.6-6_all.deb ... 109s Unpacking python3-lazr.uri (1.0.6-6) over (1.0.6-5) ... 109s Preparing to unpack .../79-python3-rpds-py_0.21.0-2ubuntu2_amd64.deb ... 109s Unpacking python3-rpds-py (0.21.0-2ubuntu2) over (0.21.0-2ubuntu1) ... 109s Preparing to unpack .../80-python3-systemd_235-1build6_amd64.deb ... 109s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 109s Preparing to unpack .../81-python3.13-gdbm_3.13.2-2_amd64.deb ... 109s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 109s Preparing to unpack .../82-ubuntu-kernel-accessories_1.549_amd64.deb ... 109s Unpacking ubuntu-kernel-accessories (1.549) over (1.548) ... 109s Preparing to unpack .../83-cloud-init_25.1-0ubuntu3_all.deb ... 109s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 109s Preparing to unpack .../84-python3-bcrypt_4.2.0-2.1build1_amd64.deb ... 109s Unpacking python3-bcrypt (4.2.0-2.1build1) over (4.2.0-2.1) ... 109s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 109s Setting up media-types (13.0.0) ... 109s Installing new version of config file /etc/mime.types ... 109s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 109s Setting up ubuntu-kernel-accessories (1.549) ... 109s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 109s Setting up pci.ids (0.0~2025.03.09-1) ... 109s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 109s Setting up apt-utils (2.9.33) ... 109s Setting up libdebuginfod-common (0.192-4) ... 110s Setting up exfatprogs (1.2.8-1) ... 110s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 110s Setting up bpftool (7.6.0+6.14.0-10.10) ... 110s Setting up libestr0:amd64 (0.1.11-2) ... 110s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 110s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 110s Setting up dosfstools (4.2-1.2) ... 110s Setting up rsyslog (8.2412.0-2ubuntu2) ... 110s info: The user `syslog' is already a member of `adm'. 111s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 111s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 111s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 111s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 111s Setting up systemd (257.3-1ubuntu3) ... 111s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 111s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 111s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 112s Setting up libparted2t64:amd64 (3.6-5) ... 112s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 112s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 112s Setting up linux-headers-generic (6.14.0-10.10) ... 112s Setting up libjemalloc2:amd64 (5.3.0-3) ... 112s Setting up locales (2.41-1ubuntu1) ... 112s Installing new version of config file /etc/locale.alias ... 112s Generating locales (this might take a while)... 114s en_US.UTF-8... done 114s Generation complete. 114s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 114s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 114s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 114s Installing new version of config file /etc/apparmor.d/fusermount3 ... 114s Installing new version of config file /etc/apparmor.d/lsusb ... 114s Installing new version of config file /etc/apparmor.d/openvpn ... 115s Reloading AppArmor profiles 116s Setting up libftdi1-2:amd64 (1.5-8build1) ... 116s Setting up libglib2.0-data (2.84.0-1) ... 116s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 116s Setting up libncurses6:amd64 (6.5+20250216-2) ... 116s Setting up strace (6.13+ds-1ubuntu1) ... 116s Setting up xz-utils (5.6.4-1) ... 116s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 117s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 117s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 117s Setting up udev (257.3-1ubuntu3) ... 118s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 120s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 120s Setting up libpci3:amd64 (1:3.13.0-2) ... 120s Setting up whiptail (0.52.24-4ubuntu2) ... 120s Setting up python-apt-common (2.9.9build1) ... 120s Setting up pnp.ids (0.393-3) ... 120s Setting up libnl-3-200:amd64 (3.7.0-1) ... 120s Setting up python3.13-minimal (3.13.2-2) ... 121s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ... 121s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 121s Setting up libc-dev-bin (2.41-1ubuntu1) ... 121s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 121s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 121s Setting up rsync (3.4.1+ds1-3) ... 122s rsync.service is a disabled or a static unit not running, not starting it. 122s Setting up python3.13-gdbm (3.13.2-2) ... 122s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 122s Setting up systemd-resolved (257.3-1ubuntu3) ... 122s Setting up initramfs-tools-bin (0.146ubuntu1) ... 122s Setting up ncurses-term (6.5+20250216-2) ... 122s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 122s Setting up libpython3.13:amd64 (3.13.2-2) ... 122s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 122s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 122s Setting up systemd-sysv (257.3-1ubuntu3) ... 122s Setting up linux-headers-virtual (6.14.0-10.10) ... 122s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 122s Setting up python3.13 (3.13.2-2) ... 123s Setting up htop (3.4.0-2) ... 123s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 125s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 125s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 125s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 125s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 125s Setting up parted (3.6-5) ... 125s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ... 125s Setting up python3 (3.13.2-2) ... 125s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ... 126s Setting up python3-markupsafe (2.1.5-1build4) ... 126s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 128s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 128s Setting up hwdata (0.393-3) ... 128s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 128s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 128s No schema files found: doing nothing. 128s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 128s Setting up linux-perf (6.14.0-10.10) ... 128s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 128s Setting up pciutils (1:3.13.0-2) ... 128s Setting up python3-rpds-py (0.21.0-2ubuntu2) ... 128s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 128s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 128s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 128s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 128s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 128s Setting up curl (8.12.1-3ubuntu1) ... 128s Setting up linux-image-virtual (6.14.0-10.10) ... 128s Setting up initramfs-tools-core (0.146ubuntu1) ... 128s Setting up linux-tools-common (6.14.0-10.10) ... 128s Setting up python3-systemd (235-1build6) ... 128s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 128s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 128s Setting up linux-image-generic (6.14.0-10.10) ... 128s Setting up python3-dbus (1.3.2-5build5) ... 129s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 129s Setting up initramfs-tools (0.146ubuntu1) ... 129s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 129s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 129s update-initramfs: deferring update (trigger activated) 129s Setting up linux-generic (6.14.0-10.10) ... 129s Setting up ubuntu-minimal (1.549) ... 129s Setting up python3-apt (2.9.9build1) ... 129s Setting up python3-bcrypt (4.2.0-2.1build1) ... 129s Setting up python3-yaml (6.0.2-1build2) ... 129s Setting up libfwupd3:amd64 (2.0.6-4) ... 129s Setting up python3-lazr.uri (1.0.6-6) ... 129s Setting up binutils (2.44-3ubuntu1) ... 129s Setting up ubuntu-standard (1.549) ... 129s Setting up cloud-init-base (25.1-0ubuntu3) ... 131s Setting up linux-virtual (6.14.0-10.10) ... 131s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 131s Setting up python3-gi (3.50.0-4build1) ... 131s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 131s Setting up fwupd (2.0.6-4) ... 131s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 132s Setting up cloud-init (25.1-0ubuntu3) ... 132s Processing triggers for man-db (2.13.0-1) ... 133s Processing triggers for dbus (1.16.2-1ubuntu1) ... 133s Processing triggers for shared-mime-info (2.4-5) ... 133s Warning: program compiled against libxml 212 using older 209 134s Processing triggers for libc-bin (2.41-1ubuntu1) ... 134s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 134s /etc/kernel/postinst.d/initramfs-tools: 134s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 134s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 145s /etc/kernel/postinst.d/zz-update-grub: 145s Sourcing file `/etc/default/grub' 145s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 145s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 145s Generating grub configuration file ... 145s Found linux image: /boot/vmlinuz-6.14.0-10-generic 145s Found initrd image: /boot/initrd.img-6.14.0-10-generic 145s Found linux image: /boot/vmlinuz-6.12.0-16-generic 145s Found initrd image: /boot/initrd.img-6.12.0-16-generic 145s Found linux image: /boot/vmlinuz-6.11.0-8-generic 145s Found initrd image: /boot/initrd.img-6.11.0-8-generic 145s Warning: os-prober will not be executed to detect other bootable partitions. 145s Systems on them will not be added to the GRUB boot configuration. 145s Check GRUB_DISABLE_OS_PROBER documentation entry. 145s Adding boot menu entry for UEFI Firmware Settings ... 145s done 146s Processing triggers for initramfs-tools (0.146ubuntu1) ... 146s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 146s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 157s Reading package lists... 158s Building dependency tree... 158s Reading state information... 158s Solving dependencies... 158s The following packages will be REMOVED: 158s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 158s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 158s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 158s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic* 158s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic* 158s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8* 158s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 158s linux-tools-6.12.0-16-generic* 158s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded. 158s After this operation, 545 MB disk space will be freed. 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 158s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 158s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 159s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 159s Removing libpython3.12t64:amd64 (3.12.9-1) ... 159s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 159s Removing libnsl2:amd64 (1.3.0-3build3) ... 159s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 159s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 159s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 161s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 162s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 164s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 164s /etc/kernel/postrm.d/initramfs-tools: 164s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 164s /etc/kernel/postrm.d/zz-update-grub: 164s Sourcing file `/etc/default/grub' 164s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 164s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 164s Generating grub configuration file ... 164s Found linux image: /boot/vmlinuz-6.14.0-10-generic 164s Found initrd image: /boot/initrd.img-6.14.0-10-generic 165s Found linux image: /boot/vmlinuz-6.12.0-16-generic 165s Found initrd image: /boot/initrd.img-6.12.0-16-generic 165s Warning: os-prober will not be executed to detect other bootable partitions. 165s Systems on them will not be added to the GRUB boot configuration. 165s Check GRUB_DISABLE_OS_PROBER documentation entry. 165s Adding boot menu entry for UEFI Firmware Settings ... 165s done 165s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ... 165s W: Removing the running kernel 165s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 165s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 165s /etc/kernel/postrm.d/initramfs-tools: 165s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic 165s /etc/kernel/postrm.d/zz-update-grub: 165s Sourcing file `/etc/default/grub' 165s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 165s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 165s Generating grub configuration file ... 165s Found linux image: /boot/vmlinuz-6.14.0-10-generic 165s Found initrd image: /boot/initrd.img-6.14.0-10-generic 166s Warning: os-prober will not be executed to detect other bootable partitions. 166s Systems on them will not be added to the GRUB boot configuration. 166s Check GRUB_DISABLE_OS_PROBER documentation entry. 166s Adding boot menu entry for UEFI Firmware Settings ... 166s done 166s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 166s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 167s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 167s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 167s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 167s Processing triggers for libc-bin (2.41-1ubuntu1) ... 167s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76972 files and directories currently installed.) 167s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 167s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 167s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 167s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 168s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed 168s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 168s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ... 168s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty 168s autopkgtest [22:32:23]: upgrading testbed (apt dist-upgrade and autopurge) 168s Reading package lists... 168s Building dependency tree... 168s Reading state information... 169s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 169s Starting 2 pkgProblemResolver with broken count: 0 169s Done 169s Entering ResolveByKeep 169s 169s Calculating upgrade... 169s The following packages will be upgraded: 169s libc-bin libc-dev-bin libc6 libc6-dev locales 170s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 170s Need to get 10.5 MB of archives. 170s After this operation, 1024 B of additional disk space will be used. 170s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 170s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 170s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 170s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 170s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 171s Preconfiguring packages ... 171s Fetched 10.5 MB in 1s (9707 kB/s) 171s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 171s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 171s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 171s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 171s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 171s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 171s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 171s Setting up libc6:amd64 (2.41-1ubuntu2) ... 172s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 172s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 172s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 172s Setting up libc-bin (2.41-1ubuntu2) ... 172s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 172s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 172s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 172s Setting up locales (2.41-1ubuntu2) ... 173s Generating locales (this might take a while)... 174s en_US.UTF-8... done 174s Generation complete. 174s Setting up libc-dev-bin (2.41-1ubuntu2) ... 174s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 174s Processing triggers for man-db (2.13.0-1) ... 175s Processing triggers for systemd (257.3-1ubuntu3) ... 176s Reading package lists... 176s Building dependency tree... 176s Reading state information... 176s Starting pkgProblemResolver with broken count: 0 177s Starting 2 pkgProblemResolver with broken count: 0 177s Done 177s Solving dependencies... 177s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 177s autopkgtest [22:32:32]: rebooting testbed after setup commands that affected boot 200s autopkgtest [22:32:55]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 203s autopkgtest [22:32:58]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-sf 206s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-sf 1.0-19+dfsg-1 (dsc) [2696 B] 206s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-sf 1.0-19+dfsg-1 (tar) [2143 kB] 206s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-sf 1.0-19+dfsg-1 (diff) [5172 B] 207s gpgv: Signature made Sun Jan 19 23:46:18 2025 UTC 207s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 207s gpgv: issuer "plessy@debian.org" 207s gpgv: Can't check signature: No public key 207s dpkg-source: warning: cannot verify inline signature for ./r-cran-sf_1.0-19+dfsg-1.dsc: no acceptable signature found 207s autopkgtest [22:33:02]: testing package r-cran-sf version 1.0-19+dfsg-1 208s autopkgtest [22:33:03]: build not needed 218s autopkgtest [22:33:13]: test run-unit-test: preparing testbed 218s Reading package lists... 218s Building dependency tree... 218s Reading state information... 219s Starting pkgProblemResolver with broken count: 0 219s Starting 2 pkgProblemResolver with broken count: 0 219s Done 219s The following NEW packages will be installed: 219s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 219s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gdal-data 219s gdal-plugins javascript-common libabsl20230802 libaec0 libaom3 219s libarmadillo14 libarpack2t64 libavif16 libblas3 libblosc1 libcairo2 219s libcfitsio10t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libfontconfig1 219s libfreexl1 libfyba0t64 libgav1-1 libgdal36 libgeos-c1t64 libgeos3.13.1 219s libgeotiff5 libgfortran5 libgif7 libgomp1 libgpgmepp6t64 libgraphite2-3 219s libharfbuzz0b libhdf4-0-alt libhdf5-310 libhdf5-hl-310 libheif-plugin-aomdec 219s libheif-plugin-libde265 libheif1 libice6 libjbig0 libjpeg-turbo8 libjpeg8 219s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 219s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 219s libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js 219s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 219s libjs-twitter-bootstrap-datepicker libkmlbase1t64 libkmldom1t64 219s libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 libltdl7 liblua5.4-0 219s libminizip1t64 libmysqlclient24 libnetcdf22 libodbc2 libodbcinst2 libogdi4.1 220s libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 220s libpaper-utils libpaper2 libpixman-1-0 libpoppler147 libpq5 libproj25 220s libqhull-r8.0 librav1e0.7 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 220s libspatialite8t64 libsvtav1enc2 libsz2 libtcl8.6 libthai-data libthai0 220s libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 libwebp7 220s libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 220s libxt6t64 libyuv0 littler mysql-common node-bootstrap-sass node-html5shiv 220s node-normalize.css pandoc pandoc-data proj-data r-base-core r-cran-abind 220s r-cran-askpass r-cran-base64enc r-cran-bit r-cran-bit64 r-cran-blob 220s r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr r-cran-class 220s r-cran-classint r-cran-cli r-cran-colorspace r-cran-commonmark r-cran-covr 220s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-deldir r-cran-desc 220s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-evaluate 220s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome r-cran-fs 220s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-goftest r-cran-gtable 220s r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-isoband 220s r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth r-cran-knitr 220s r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle 220s r-cran-littler r-cran-lwgeom r-cran-magrittr r-cran-maps r-cran-mass 220s r-cran-matrix r-cran-memoise r-cran-mgcv r-cran-microbenchmark r-cran-mime 220s r-cran-munsell r-cran-nanoarrow r-cran-nlme r-cran-openssl r-cran-pbapply 220s r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 220s r-cran-pkgload r-cran-plogr r-cran-polyclip r-cran-praise r-cran-processx 220s r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr r-cran-r6 220s r-cran-rappdirs r-cran-raster r-cran-rcolorbrewer r-cran-rcpp r-cran-rex 220s r-cran-rlang r-cran-rmarkdown r-cran-rpart r-cran-rpostgresql 220s r-cran-rprojroot r-cran-rsqlite r-cran-s2 r-cran-sass r-cran-scales 220s r-cran-sf r-cran-shiny r-cran-sourcetools r-cran-sp r-cran-spatstat 220s r-cran-spatstat.data r-cran-spatstat.explore r-cran-spatstat.geom 220s r-cran-spatstat.linnet r-cran-spatstat.model r-cran-spatstat.random 220s r-cran-spatstat.sparse r-cran-spatstat.univar r-cran-spatstat.utils 220s r-cran-stars r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 220s r-cran-tensor r-cran-terra r-cran-testthat r-cran-tibble r-cran-tidyr 220s r-cran-tidyselect r-cran-tinytex r-cran-units r-cran-utf8 r-cran-vctrs 220s r-cran-viridislite r-cran-waldo r-cran-withr r-cran-wk r-cran-xfun 220s r-cran-xtable r-cran-yaml unixodbc-common unzip x11-common xdg-utils zip 220s 0 upgraded, 259 newly installed, 0 to remove and 0 not upgraded. 220s Need to get 243 MB of archives. 220s After this operation, 696 MB of additional disk space will be used. 220s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 220s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 220s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 220s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 221s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 221s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 221s Get:7 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 221s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 221s Get:9 http://ftpmaster.internal/ubuntu plucky/universe amd64 gdal-data all 3.10.2+dfsg-1build3 [269 kB] 221s Get:10 http://ftpmaster.internal/ubuntu plucky/universe amd64 gdal-plugins amd64 3.10.2+dfsg-1build3 [25.7 kB] 221s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B] 221s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libabsl20230802 amd64 20230802.1-4.2 [567 kB] 221s Get:13 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 221s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libaom3 amd64 3.12.0-1 [2742 kB] 221s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 221s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 221s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 221s Get:18 http://ftpmaster.internal/ubuntu plucky/universe amd64 libarpack2t64 amd64 3.9.1-4 [120 kB] 221s Get:19 http://ftpmaster.internal/ubuntu plucky/universe amd64 libarmadillo14 amd64 1:14.2.3+dfsg-1 [105 kB] 221s Get:20 http://ftpmaster.internal/ubuntu plucky/universe amd64 libdav1d7 amd64 1.5.1-1 [743 kB] 221s Get:21 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgav1-1 amd64 0.19.0-3 [697 kB] 222s Get:22 http://ftpmaster.internal/ubuntu plucky/universe amd64 librav1e0.7 amd64 0.7.1-9 [1025 kB] 222s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2686 kB] 222s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 222s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 222s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libyuv0 amd64 0.0.1904.20250204-1 [354 kB] 222s Get:27 http://ftpmaster.internal/ubuntu plucky/universe amd64 libavif16 amd64 1.2.0-1ubuntu1 [140 kB] 222s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libsnappy1v5 amd64 1.2.1-1 [30.4 kB] 222s Get:29 http://ftpmaster.internal/ubuntu plucky/universe amd64 libblosc1 amd64 1.21.5+ds-1build1 [36.2 kB] 222s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 222s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 222s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 222s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 222s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 222s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcfitsio10t64 amd64 4.5.0-5 [629 kB] 222s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 222s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libde265-0 amd64 1.0.15-1build5 [285 kB] 222s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 222s Get:39 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfyba0t64 amd64 4.1.1-11build1 [119 kB] 222s Get:40 http://ftpmaster.internal/ubuntu plucky/universe amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [22.9 kB] 222s Get:41 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfreexl1 amd64 2.0.0-1build2 [41.7 kB] 222s Get:42 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeos3.13.1 amd64 3.13.1-1 [1017 kB] 222s Get:43 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeos-c1t64 amd64 3.13.1-1 [103 kB] 222s Get:44 http://ftpmaster.internal/ubuntu plucky/universe amd64 proj-data all 9.5.1-1 [7924 kB] 223s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 223s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 223s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 223s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 223s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 223s Get:50 http://ftpmaster.internal/ubuntu plucky/universe amd64 libproj25 amd64 9.5.1-1 [1499 kB] 223s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeotiff5 amd64 1.7.4-1 [60.2 kB] 223s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libgif7 amd64 5.2.2-1ubuntu2 [36.0 kB] 223s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 223s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf4-0-alt amd64 4.3.0-1 [285 kB] 223s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 223s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-aomdec amd64 1.19.7-1 [11.6 kB] 223s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-libde265 amd64 1.19.7-1 [9060 B] 223s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif1 amd64 1.19.7-1 [428 kB] 223s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 liburiparser1 amd64 0.9.8+dfsg-2 [46.8 kB] 223s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmlbase1t64 amd64 1.3.0-12build1 [49.9 kB] 223s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmldom1t64 amd64 1.3.0-12build1 [156 kB] 223s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmlengine1t64 amd64 1.3.0-12build1 [71.4 kB] 223s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 mysql-common all 5.8+1.1.1ubuntu1 [6922 B] 223s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libmysqlclient24 amd64 8.4.4-0ubuntu2 [1257 kB] 223s Get:65 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 223s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf22 amd64 1:4.9.3-1 [574 kB] 223s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libltdl7 amd64 2.5.4-4 [46.5 kB] 223s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libodbc2 amd64 2.3.12-2ubuntu1 [186 kB] 223s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 unixodbc-common all 2.3.12-2ubuntu1 [9044 B] 223s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libodbcinst2 amd64 2.3.12-2ubuntu1 [34.1 kB] 223s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libogdi4.1 amd64 4.1.1+ds-5 [219 kB] 223s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.3-2 [218 kB] 223s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgmepp6t64 amd64 1.24.2-1ubuntu2 [126 kB] 223s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 223s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libpoppler147 amd64 25.03.0-2 [1295 kB] 224s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libpq5 amd64 17.4-1 [155 kB] 224s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 224s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 librttopo1 amd64 1.1.0-4 [205 kB] 224s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libspatialite8t64 amd64 5.1.0-3build1 [1919 kB] 224s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3build1 [1028 kB] 224s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgdal36 amd64 3.10.2+dfsg-1build3 [10.3 MB] 225s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 225s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 225s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 225s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 225s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 225s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 225s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 225s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 225s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 225s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 225s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 225s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 225s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 225s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 225s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 225s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 225s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 225s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 225s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 225s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 225s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 225s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 225s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 225s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 225s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 225s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 225s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 226s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 226s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 226s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 226s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 226s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 226s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 libudunits2-data all 2.2.28-7build1 [19.4 kB] 226s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 libudunits2-0 amd64 2.2.28-7build1 [54.1 kB] 226s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 226s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 226s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 226s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 226s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 228s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 228s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 228s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 228s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 228s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 228s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 228s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 230s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 230s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 230s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 230s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 230s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB] 230s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit64 amd64 4.6.0-1-1ubuntu2 [501 kB] 230s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 231s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 231s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 231s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 231s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 231s Get:139 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 231s Get:140 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 231s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 231s Get:142 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 231s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 231s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 231s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 231s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 231s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 231s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 231s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 231s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 231s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 231s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 231s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 231s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB] 231s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 231s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 232s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 232s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 232s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 232s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-e1071 amd64 1.7-16-1 [565 kB] 232s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernsmooth amd64 2.23-26-1 [94.5 kB] 232s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-classint amd64 0.4-11+dfsg-1 [108 kB] 232s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 232s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 232s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 232s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rex all 1.2.1-1 [129 kB] 232s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 6.2.1+dfsg-1ubuntu1 [197 kB] 232s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 232s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 232s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 232s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 232s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 232s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-covr amd64 3.6.4+dfsg-1 [303 kB] 232s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB] 232s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 232s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 232s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 232s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 232s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 232s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 232s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 232s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 232s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 232s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 232s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 232s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 232s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 232s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 232s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 233s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 233s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 233s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 233s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 233s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.167-1 [2320 kB] 233s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 233s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 234s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 234s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB] 234s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 234s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 234s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 234s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 234s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-goftest amd64 1.2-3-1 [59.5 kB] 235s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 235s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 235s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 235s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 235s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 235s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 235s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 235s Get:211 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 236s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 236s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-units amd64 0.8-5+dfsg-1 [275 kB] 236s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-wk amd64 0.9.4-1 [1791 kB] 236s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-s2 amd64 1.1.7-1 [2023 kB] 236s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sf amd64 1.0-19+dfsg-1 [3313 kB] 236s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lwgeom amd64 0.2-14-1 [463 kB] 236s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-maps amd64 3.4.2.1-1 [2352 kB] 236s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-microbenchmark amd64 1.5.0-1 [67.4 kB] 236s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nanoarrow amd64 0.6.0-1 [397 kB] 236s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 236s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 236s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-2 [125 kB] 236s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 236s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 236s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB] 236s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 236s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB] 236s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sp amd64 1:2.2-0+dfsg-1 [1444 kB] 237s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-terra amd64 1.8-29-1 [4306 kB] 237s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-raster amd64 3.6-31-1 [3176 kB] 237s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 237s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 237s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 237s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 237s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 237s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 237s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 237s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB] 238s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB] 238s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rpostgresql amd64 0.7-7+dfsg-1 [365 kB] 238s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB] 238s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.utils amd64 3.1-2-1 [383 kB] 238s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.data all 3.1-4-1 [4047 kB] 239s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.univar amd64 3.1-1-1build1 [310 kB] 239s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.geom amd64 3.3-5-1 [3959 kB] 239s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.random amd64 3.3-2-1 [1172 kB] 239s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tensor all 1.5-4 [15.7 kB] 239s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.sparse amd64 3.1-0-1 [221 kB] 239s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.explore amd64 3.3-4-1 [3347 kB] 239s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.model amd64 3.3-4-1 [3397 kB] 240s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.linnet amd64 3.2-5-1 [1509 kB] 240s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat amd64 3.3-1-1 [4121 kB] 240s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stars all 0.6-8-1 [4414 kB] 240s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB] 240s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 240s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-2 [150 kB] 240s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 240s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 241s Preconfiguring packages ... 241s Fetched 243 MB in 21s (11.4 MB/s) 241s Selecting previously unselected package fonts-dejavu-mono. 241s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 241s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8_all.deb ... 241s Unpacking fonts-dejavu-mono (2.37-8) ... 241s Selecting previously unselected package fonts-dejavu-core. 241s Preparing to unpack .../001-fonts-dejavu-core_2.37-8_all.deb ... 241s Unpacking fonts-dejavu-core (2.37-8) ... 242s Selecting previously unselected package fontconfig-config. 242s Preparing to unpack .../002-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 242s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 242s Selecting previously unselected package libfontconfig1:amd64. 242s Preparing to unpack .../003-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 242s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 242s Selecting previously unselected package fontconfig. 242s Preparing to unpack .../004-fontconfig_2.15.0-2ubuntu1_amd64.deb ... 242s Unpacking fontconfig (2.15.0-2ubuntu1) ... 242s Selecting previously unselected package fonts-font-awesome. 242s Preparing to unpack .../005-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 242s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 242s Selecting previously unselected package fonts-glyphicons-halflings. 242s Preparing to unpack .../006-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 242s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 242s Selecting previously unselected package fonts-mathjax. 242s Preparing to unpack .../007-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 242s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 242s Selecting previously unselected package gdal-data. 242s Preparing to unpack .../008-gdal-data_3.10.2+dfsg-1build3_all.deb ... 242s Unpacking gdal-data (3.10.2+dfsg-1build3) ... 242s Selecting previously unselected package gdal-plugins:amd64. 242s Preparing to unpack .../009-gdal-plugins_3.10.2+dfsg-1build3_amd64.deb ... 242s Unpacking gdal-plugins:amd64 (3.10.2+dfsg-1build3) ... 242s Selecting previously unselected package javascript-common. 242s Preparing to unpack .../010-javascript-common_12_all.deb ... 242s Unpacking javascript-common (12) ... 242s Selecting previously unselected package libabsl20230802:amd64. 242s Preparing to unpack .../011-libabsl20230802_20230802.1-4.2_amd64.deb ... 242s Unpacking libabsl20230802:amd64 (20230802.1-4.2) ... 242s Selecting previously unselected package libaec0:amd64. 242s Preparing to unpack .../012-libaec0_1.1.3-1_amd64.deb ... 242s Unpacking libaec0:amd64 (1.1.3-1) ... 242s Selecting previously unselected package libaom3:amd64. 242s Preparing to unpack .../013-libaom3_3.12.0-1_amd64.deb ... 242s Unpacking libaom3:amd64 (3.12.0-1) ... 242s Selecting previously unselected package libblas3:amd64. 242s Preparing to unpack .../014-libblas3_3.12.1-2_amd64.deb ... 242s Unpacking libblas3:amd64 (3.12.1-2) ... 242s Selecting previously unselected package libgfortran5:amd64. 242s Preparing to unpack .../015-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 242s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 242s Selecting previously unselected package liblapack3:amd64. 242s Preparing to unpack .../016-liblapack3_3.12.1-2_amd64.deb ... 242s Unpacking liblapack3:amd64 (3.12.1-2) ... 242s Selecting previously unselected package libarpack2t64:amd64. 242s Preparing to unpack .../017-libarpack2t64_3.9.1-4_amd64.deb ... 242s Unpacking libarpack2t64:amd64 (3.9.1-4) ... 242s 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unselected package libcfitsio10t64:amd64. 243s Preparing to unpack .../034-libcfitsio10t64_4.5.0-5_amd64.deb ... 243s Unpacking libcfitsio10t64:amd64 (4.5.0-5) ... 243s Selecting previously unselected package libdatrie1:amd64. 243s Preparing to unpack .../035-libdatrie1_0.2.13-3build1_amd64.deb ... 243s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 243s Selecting previously unselected package libde265-0:amd64. 243s Preparing to unpack .../036-libde265-0_1.0.15-1build5_amd64.deb ... 243s Unpacking libde265-0:amd64 (1.0.15-1build5) ... 243s Selecting previously unselected package libdeflate0:amd64. 243s Preparing to unpack .../037-libdeflate0_1.23-1_amd64.deb ... 243s Unpacking libdeflate0:amd64 (1.23-1) ... 243s Selecting previously unselected package libfyba0t64:amd64. 243s Preparing to unpack .../038-libfyba0t64_4.1.1-11build1_amd64.deb ... 243s Unpacking libfyba0t64:amd64 (4.1.1-11build1) ... 243s Selecting previously unselected package libminizip1t64:amd64. 243s Preparing to unpack .../039-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 243s Unpacking libminizip1t64:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 243s Selecting previously unselected package libfreexl1:amd64. 243s Preparing to unpack .../040-libfreexl1_2.0.0-1build2_amd64.deb ... 243s Unpacking libfreexl1:amd64 (2.0.0-1build2) ... 243s Selecting previously unselected package libgeos3.13.1:amd64. 243s Preparing to unpack .../041-libgeos3.13.1_3.13.1-1_amd64.deb ... 243s Unpacking libgeos3.13.1:amd64 (3.13.1-1) ... 243s Selecting previously unselected package libgeos-c1t64:amd64. 243s Preparing to unpack .../042-libgeos-c1t64_3.13.1-1_amd64.deb ... 243s Unpacking libgeos-c1t64:amd64 (3.13.1-1) ... 243s Selecting previously unselected package proj-data. 243s Preparing to unpack .../043-proj-data_9.5.1-1_all.deb ... 243s Unpacking proj-data (9.5.1-1) ... 243s Selecting previously unselected package libjbig0:amd64. 243s Preparing to unpack .../044-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 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unselected package libgeotiff5:amd64. 244s Preparing to unpack .../050-libgeotiff5_1.7.4-1_amd64.deb ... 244s Unpacking libgeotiff5:amd64 (1.7.4-1) ... 244s Selecting previously unselected package libgif7:amd64. 244s Preparing to unpack .../051-libgif7_5.2.2-1ubuntu2_amd64.deb ... 244s Unpacking libgif7:amd64 (5.2.2-1ubuntu2) ... 244s Selecting previously unselected package libsz2:amd64. 244s Preparing to unpack .../052-libsz2_1.1.3-1_amd64.deb ... 244s Unpacking libsz2:amd64 (1.1.3-1) ... 244s Selecting previously unselected package libhdf4-0-alt:amd64. 244s Preparing to unpack .../053-libhdf4-0-alt_4.3.0-1_amd64.deb ... 244s Unpacking libhdf4-0-alt:amd64 (4.3.0-1) ... 244s Selecting previously unselected package libhdf5-310:amd64. 244s Preparing to unpack .../054-libhdf5-310_1.14.5+repack-3_amd64.deb ... 244s Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ... 244s Selecting previously unselected package libheif-plugin-aomdec:amd64. 244s Preparing to unpack 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libogdi4.1:amd64 (4.1.1+ds-5) ... 244s Selecting previously unselected package libopenjp2-7:amd64. 244s Preparing to unpack .../071-libopenjp2-7_2.5.3-2_amd64.deb ... 244s Unpacking libopenjp2-7:amd64 (2.5.3-2) ... 244s Selecting previously unselected package libgpgmepp6t64:amd64. 244s Preparing to unpack .../072-libgpgmepp6t64_1.24.2-1ubuntu2_amd64.deb ... 244s Unpacking libgpgmepp6t64:amd64 (1.24.2-1ubuntu2) ... 244s Selecting previously unselected package liblcms2-2:amd64. 244s Preparing to unpack .../073-liblcms2-2_2.16-2_amd64.deb ... 244s Unpacking liblcms2-2:amd64 (2.16-2) ... 244s Selecting previously unselected package libpoppler147:amd64. 244s Preparing to unpack .../074-libpoppler147_25.03.0-2_amd64.deb ... 244s Unpacking libpoppler147:amd64 (25.03.0-2) ... 244s Selecting previously unselected package libpq5:amd64. 244s Preparing to unpack .../075-libpq5_17.4-1_amd64.deb ... 244s Unpacking libpq5:amd64 (17.4-1) ... 244s Selecting previously unselected package 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package libgomp1:amd64. 245s Preparing to unpack .../081-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 245s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 245s Selecting previously unselected package libgraphite2-3:amd64. 245s Preparing to unpack .../082-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 245s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 245s Selecting previously unselected package libharfbuzz0b:amd64. 245s Preparing to unpack .../083-libharfbuzz0b_10.2.0-1_amd64.deb ... 245s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 245s Selecting previously unselected package x11-common. 245s Preparing to unpack .../084-x11-common_1%3a7.7+23ubuntu3_all.deb ... 245s Unpacking x11-common (1:7.7+23ubuntu3) ... 245s Selecting previously unselected package libice6:amd64. 245s Preparing to unpack .../085-libice6_2%3a1.1.1-1_amd64.deb ... 245s Unpacking libice6:amd64 (2:1.1.1-1) ... 245s Selecting previously unselected package libjs-bootstrap. 245s Preparing to unpack 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.../107-libpaper-utils_2.2.5-0.3_amd64.deb ... 246s Unpacking libpaper-utils (2.2.5-0.3) ... 246s Selecting previously unselected package libsm6:amd64. 246s Preparing to unpack .../108-libsm6_2%3a1.2.4-1_amd64.deb ... 246s Unpacking libsm6:amd64 (2:1.2.4-1) ... 246s Selecting previously unselected package libtcl8.6:amd64. 246s Preparing to unpack .../109-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 246s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 246s Selecting previously unselected package libxft2:amd64. 246s Preparing to unpack .../110-libxft2_2.3.6-1build1_amd64.deb ... 246s Unpacking libxft2:amd64 (2.3.6-1build1) ... 246s Selecting previously unselected package libxss1:amd64. 246s Preparing to unpack .../111-libxss1_1%3a1.2.3-1build3_amd64.deb ... 246s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 246s Selecting previously unselected package libtk8.6:amd64. 246s Preparing to unpack .../112-libtk8.6_8.6.16-1_amd64.deb ... 246s Unpacking libtk8.6:amd64 (8.6.16-1) ... 246s Selecting previously unselected package libudunits2-data. 246s Preparing to unpack .../113-libudunits2-data_2.2.28-7build1_all.deb ... 246s Unpacking libudunits2-data (2.2.28-7build1) ... 246s Selecting previously unselected package libudunits2-0. 246s Preparing to unpack .../114-libudunits2-0_2.2.28-7build1_amd64.deb ... 246s Unpacking libudunits2-0 (2.2.28-7build1) ... 246s Selecting previously unselected package libxt6t64:amd64. 246s Preparing to unpack .../115-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 246s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 246s Selecting previously unselected package zip. 246s Preparing to unpack .../116-zip_3.0-14ubuntu2_amd64.deb ... 246s Unpacking zip (3.0-14ubuntu2) ... 246s Selecting previously unselected package unzip. 246s Preparing to unpack .../117-unzip_6.0-28ubuntu6_amd64.deb ... 246s Unpacking unzip (6.0-28ubuntu6) ... 246s Selecting previously unselected package xdg-utils. 246s Preparing to unpack .../118-xdg-utils_1.2.1-2ubuntu1_all.deb ... 246s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 246s Selecting previously unselected package r-base-core. 246s Preparing to unpack .../119-r-base-core_4.4.3-1_amd64.deb ... 246s Unpacking r-base-core (4.4.3-1) ... 247s Selecting previously unselected package r-cran-littler. 247s Preparing to unpack .../120-r-cran-littler_0.3.20-2_amd64.deb ... 247s Unpacking r-cran-littler (0.3.20-2) ... 247s Selecting previously unselected package littler. 247s Preparing to unpack .../121-littler_0.3.20-2_all.deb ... 247s Unpacking littler (0.3.20-2) ... 247s Selecting previously unselected package node-bootstrap-sass. 247s Preparing to unpack .../122-node-bootstrap-sass_3.4.3-2_all.deb ... 247s Unpacking node-bootstrap-sass (3.4.3-2) ... 247s Selecting previously unselected package node-html5shiv. 247s Preparing to unpack .../123-node-html5shiv_3.7.3+dfsg-5_all.deb ... 247s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 247s Selecting previously unselected package node-normalize.css. 247s Preparing to unpack .../124-node-normalize.css_8.0.1-5_all.deb ... 247s Unpacking node-normalize.css (8.0.1-5) ... 247s Selecting previously unselected package pandoc-data. 247s Preparing to unpack .../125-pandoc-data_3.1.11.1-3build1_all.deb ... 247s Unpacking pandoc-data (3.1.11.1-3build1) ... 247s Selecting previously unselected package pandoc. 247s Preparing to unpack .../126-pandoc_3.1.11.1+ds-2_amd64.deb ... 247s Unpacking pandoc (3.1.11.1+ds-2) ... 248s Selecting previously unselected package r-cran-abind. 248s Preparing to unpack .../127-r-cran-abind_1.4-8-1_all.deb ... 248s Unpacking r-cran-abind (1.4-8-1) ... 248s Selecting previously unselected package r-cran-sys. 248s Preparing to unpack .../128-r-cran-sys_3.4.3-1_amd64.deb ... 248s Unpacking r-cran-sys (3.4.3-1) ... 248s Selecting previously unselected package r-cran-askpass. 248s Preparing to unpack .../129-r-cran-askpass_1.2.1-1_amd64.deb ... 248s Unpacking r-cran-askpass (1.2.1-1) ... 248s Selecting previously unselected package r-cran-base64enc. 248s Preparing to unpack .../130-r-cran-base64enc_0.1-3-3_amd64.deb ... 248s Unpacking r-cran-base64enc (0.1-3-3) ... 248s Selecting previously unselected package r-cran-bit. 248s Preparing to unpack .../131-r-cran-bit_4.6.0+dfsg-1_amd64.deb ... 248s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 248s Selecting previously unselected package r-cran-bit64. 248s Preparing to unpack .../132-r-cran-bit64_4.6.0-1-1ubuntu2_amd64.deb ... 248s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 248s Selecting previously unselected package r-cran-rlang. 248s Preparing to unpack .../133-r-cran-rlang_1.1.5-1_amd64.deb ... 248s Unpacking r-cran-rlang (1.1.5-1) ... 248s Selecting previously unselected package r-cran-cli. 248s Preparing to unpack .../134-r-cran-cli_3.6.4-1_amd64.deb ... 248s Unpacking r-cran-cli (3.6.4-1) ... 248s Selecting previously unselected package r-cran-glue. 248s Preparing to unpack .../135-r-cran-glue_1.8.0-1_amd64.deb ... 248s Unpacking r-cran-glue (1.8.0-1) ... 248s Selecting previously unselected package r-cran-lifecycle. 248s Preparing to unpack .../136-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 248s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 248s Selecting previously unselected package r-cran-vctrs. 248s Preparing to unpack .../137-r-cran-vctrs_0.6.5-1_amd64.deb ... 248s Unpacking r-cran-vctrs (0.6.5-1) ... 248s Selecting previously unselected package r-cran-blob. 248s Preparing to unpack .../138-r-cran-blob_1.2.4-1_all.deb ... 248s Unpacking r-cran-blob (1.2.4-1) ... 248s Selecting previously unselected package r-cran-brio. 248s Preparing to unpack .../139-r-cran-brio_1.1.5-1_amd64.deb ... 248s Unpacking r-cran-brio (1.1.5-1) ... 248s Selecting previously unselected package r-cran-fastmap. 248s Preparing to unpack .../140-r-cran-fastmap_1.2.0-1_amd64.deb ... 248s Unpacking r-cran-fastmap (1.2.0-1) ... 248s Selecting previously unselected package r-cran-cachem. 248s Preparing to unpack .../141-r-cran-cachem_1.1.0-1_amd64.deb ... 248s Unpacking r-cran-cachem (1.1.0-1) ... 248s Selecting previously unselected package r-cran-digest. 248s Preparing to unpack .../142-r-cran-digest_0.6.37-1_amd64.deb ... 248s Unpacking r-cran-digest (0.6.37-1) ... 248s Selecting previously unselected package r-cran-htmltools. 248s Preparing to unpack .../143-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 248s Unpacking r-cran-htmltools (0.5.8.1-1) ... 248s Selecting previously unselected package r-cran-jquerylib. 248s Preparing to unpack .../144-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 248s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 248s Selecting previously unselected package r-cran-jsonlite. 248s Preparing to unpack .../145-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 248s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 248s Selecting previously unselected package r-cran-memoise. 248s Preparing to unpack .../146-r-cran-memoise_2.0.1-1_all.deb ... 248s Unpacking r-cran-memoise (2.0.1-1) ... 248s Selecting previously unselected package r-cran-mime. 248s Preparing to unpack .../147-r-cran-mime_0.12-2_amd64.deb ... 248s Unpacking r-cran-mime (0.12-2) ... 248s Selecting previously unselected package r-cran-fs. 248s Preparing to unpack .../148-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 248s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 248s Selecting previously unselected package r-cran-r6. 248s Preparing to unpack .../149-r-cran-r6_2.6.1-1_all.deb ... 248s Unpacking r-cran-r6 (2.6.1-1) ... 248s Selecting previously unselected package r-cran-rappdirs. 248s Preparing to unpack .../150-r-cran-rappdirs_0.3.3-1_amd64.deb ... 248s Unpacking r-cran-rappdirs (0.3.3-1) ... 249s Selecting previously unselected package r-cran-sass. 249s Preparing to unpack .../151-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 249s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 249s Selecting previously unselected package r-cran-bslib. 249s Preparing to unpack .../152-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 249s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 249s Selecting previously unselected package r-cran-ps. 249s Preparing to unpack .../153-r-cran-ps_1.9.0-1_amd64.deb ... 249s Unpacking r-cran-ps (1.9.0-1) ... 249s Selecting previously unselected package r-cran-processx. 249s Preparing to unpack .../154-r-cran-processx_3.8.6-1_amd64.deb ... 249s Unpacking r-cran-processx (3.8.6-1) ... 249s Selecting previously unselected package r-cran-callr. 249s Preparing to unpack .../155-r-cran-callr_3.7.6-1_all.deb ... 249s Unpacking r-cran-callr (3.7.6-1) ... 249s Selecting previously unselected package r-cran-mass. 249s Preparing to unpack .../156-r-cran-mass_7.3-64-1_amd64.deb ... 249s Unpacking r-cran-mass (7.3-64-1) ... 249s Selecting previously unselected package r-cran-class. 249s Preparing to unpack .../157-r-cran-class_7.3-23-1_amd64.deb ... 249s Unpacking r-cran-class (7.3-23-1) ... 249s Selecting previously unselected package r-cran-proxy. 249s Preparing to unpack .../158-r-cran-proxy_0.4-27-1_amd64.deb ... 249s Unpacking r-cran-proxy (0.4-27-1) ... 249s Selecting previously unselected package r-cran-e1071. 249s Preparing to unpack .../159-r-cran-e1071_1.7-16-1_amd64.deb ... 249s Unpacking r-cran-e1071 (1.7-16-1) ... 249s Selecting previously unselected package r-cran-kernsmooth. 249s Preparing to unpack .../160-r-cran-kernsmooth_2.23-26-1_amd64.deb ... 249s Unpacking r-cran-kernsmooth (2.23-26-1) ... 249s Selecting previously unselected package r-cran-classint. 249s Preparing to unpack .../161-r-cran-classint_0.4-11+dfsg-1_amd64.deb ... 249s Unpacking r-cran-classint (0.4-11+dfsg-1) ... 249s Selecting previously unselected package r-cran-colorspace. 249s Preparing to unpack .../162-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ... 249s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 249s Selecting previously unselected package r-cran-commonmark. 249s Preparing to unpack .../163-r-cran-commonmark_1.9.2-2_amd64.deb ... 249s Unpacking r-cran-commonmark (1.9.2-2) ... 249s Selecting previously unselected package r-cran-lazyeval. 249s Preparing to unpack .../164-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 249s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 249s Selecting previously unselected package r-cran-rex. 249s Preparing to unpack .../165-r-cran-rex_1.2.1-1_all.deb ... 249s Unpacking r-cran-rex (1.2.1-1) ... 249s Selecting previously unselected package r-cran-curl. 249s Preparing to unpack .../166-r-cran-curl_6.2.1+dfsg-1ubuntu1_amd64.deb ... 249s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 249s Selecting previously unselected package r-cran-openssl. 249s Preparing to unpack .../167-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 249s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 249s Selecting previously unselected package r-cran-httr. 249s Preparing to unpack .../168-r-cran-httr_1.4.7+dfsg-1_all.deb ... 249s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 249s Selecting previously unselected package r-cran-crayon. 249s Preparing to unpack .../169-r-cran-crayon_1.5.3-1_all.deb ... 249s Unpacking r-cran-crayon (1.5.3-1) ... 249s Selecting previously unselected package r-cran-withr. 249s Preparing to unpack .../170-r-cran-withr_3.0.2+dfsg-1_all.deb ... 249s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 249s Selecting previously unselected package r-cran-yaml. 249s Preparing to unpack .../171-r-cran-yaml_2.3.10-1_amd64.deb ... 249s Unpacking r-cran-yaml (2.3.10-1) ... 249s Selecting previously unselected package r-cran-covr. 249s Preparing to unpack .../172-r-cran-covr_3.6.4+dfsg-1_amd64.deb ... 249s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 249s Selecting previously unselected package r-cran-cpp11. 249s Preparing to unpack .../173-r-cran-cpp11_0.5.2-1_all.deb ... 249s Unpacking r-cran-cpp11 (0.5.2-1) ... 250s Selecting previously unselected package r-cran-dbi. 250s Preparing to unpack .../174-r-cran-dbi_1.2.3-1_all.deb ... 250s Unpacking r-cran-dbi (1.2.3-1) ... 250s Selecting previously unselected package r-cran-deldir. 250s Preparing to unpack .../175-r-cran-deldir_2.0-4-1build1_amd64.deb ... 250s Unpacking r-cran-deldir (2.0-4-1build1) ... 250s Selecting previously unselected package r-cran-desc. 250s Preparing to unpack .../176-r-cran-desc_1.4.3-1_all.deb ... 250s Unpacking r-cran-desc (1.4.3-1) ... 250s Selecting previously unselected package r-cran-diffobj. 250s Preparing to unpack .../177-r-cran-diffobj_0.3.5-1_amd64.deb ... 250s Unpacking r-cran-diffobj (0.3.5-1) ... 250s Selecting previously unselected package r-cran-generics. 250s Preparing to unpack .../178-r-cran-generics_0.1.3-1_all.deb ... 250s Unpacking r-cran-generics (0.1.3-1) ... 250s Selecting previously unselected package r-cran-magrittr. 250s Preparing to unpack .../179-r-cran-magrittr_2.0.3-1_amd64.deb ... 250s Unpacking r-cran-magrittr (2.0.3-1) ... 250s Selecting previously unselected package r-cran-utf8. 250s Preparing to unpack .../180-r-cran-utf8_1.2.4-1_amd64.deb ... 250s Unpacking r-cran-utf8 (1.2.4-1) ... 250s Selecting previously unselected package r-cran-pillar. 250s Preparing to unpack .../181-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 250s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 250s Selecting previously unselected package r-cran-fansi. 250s Preparing to unpack .../182-r-cran-fansi_1.0.5-1_amd64.deb ... 250s Unpacking r-cran-fansi (1.0.5-1) ... 250s Selecting previously unselected package r-cran-pkgconfig. 250s Preparing to unpack .../183-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 250s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 250s Selecting previously unselected package r-cran-tibble. 250s Preparing to unpack .../184-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 250s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 250s Selecting previously unselected package r-cran-tidyselect. 250s Preparing to unpack .../185-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 250s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 250s Selecting previously unselected package r-cran-dplyr. 250s Preparing to unpack .../186-r-cran-dplyr_1.1.4-4_amd64.deb ... 250s Unpacking r-cran-dplyr (1.1.4-4) ... 250s Selecting previously unselected package r-cran-evaluate. 250s Preparing to unpack .../187-r-cran-evaluate_1.0.3-1_all.deb ... 250s Unpacking r-cran-evaluate (1.0.3-1) ... 250s Selecting previously unselected package r-cran-farver. 250s Preparing to unpack .../188-r-cran-farver_2.1.2-1_amd64.deb ... 250s Unpacking r-cran-farver (2.1.2-1) ... 250s Selecting previously unselected package r-cran-fontawesome. 250s Preparing to unpack .../189-r-cran-fontawesome_0.5.3-1_all.deb ... 250s Unpacking r-cran-fontawesome (0.5.3-1) ... 250s Selecting previously unselected package r-cran-gtable. 250s Preparing to unpack .../190-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 250s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 250s Selecting previously unselected package r-cran-isoband. 250s Preparing to unpack .../191-r-cran-isoband_0.2.7-1_amd64.deb ... 250s Unpacking r-cran-isoband (0.2.7-1) ... 250s Selecting previously unselected package r-cran-lattice. 250s Preparing to unpack .../192-r-cran-lattice_0.22-6-1_amd64.deb ... 250s Unpacking r-cran-lattice (0.22-6-1) ... 250s Selecting previously unselected package r-cran-nlme. 250s Preparing to unpack .../193-r-cran-nlme_3.1.167-1_amd64.deb ... 250s Unpacking r-cran-nlme (3.1.167-1) ... 250s Selecting previously unselected package r-cran-matrix. 250s Preparing to unpack .../194-r-cran-matrix_1.7-3-1_amd64.deb ... 250s Unpacking r-cran-matrix (1.7-3-1) ... 250s Selecting previously unselected package r-cran-mgcv. 250s Preparing to unpack .../195-r-cran-mgcv_1.9-1-1_amd64.deb ... 250s Unpacking r-cran-mgcv (1.9-1-1) ... 251s Selecting previously unselected package r-cran-labeling. 251s Preparing to unpack .../196-r-cran-labeling_0.4.3-1_all.deb ... 251s Unpacking r-cran-labeling (0.4.3-1) ... 251s Selecting previously unselected package r-cran-munsell. 251s Preparing to unpack .../197-r-cran-munsell_0.5.1-1_all.deb ... 251s Unpacking r-cran-munsell (0.5.1-1) ... 251s Selecting previously unselected package r-cran-rcolorbrewer. 251s Preparing to unpack .../198-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 251s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 251s Selecting previously unselected package r-cran-viridislite. 251s Preparing to unpack .../199-r-cran-viridislite_0.4.2-2_all.deb ... 251s Unpacking r-cran-viridislite (0.4.2-2) ... 251s Selecting previously unselected package r-cran-scales. 251s Preparing to unpack .../200-r-cran-scales_1.3.0-1_all.deb ... 251s Unpacking r-cran-scales (1.3.0-1) ... 251s Selecting previously unselected package r-cran-ggplot2. 251s Preparing to unpack .../201-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 251s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 251s Selecting previously unselected package r-cran-goftest. 251s Preparing to unpack .../202-r-cran-goftest_1.2-3-1_amd64.deb ... 251s Unpacking r-cran-goftest (1.2-3-1) ... 251s Selecting previously unselected package r-cran-xfun. 251s Preparing to unpack .../203-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 251s Unpacking r-cran-xfun (0.51+dfsg-1) ... 251s Selecting previously unselected package r-cran-highr. 251s Preparing to unpack .../204-r-cran-highr_0.11+dfsg-1_all.deb ... 251s Unpacking r-cran-highr (0.11+dfsg-1) ... 251s Selecting previously unselected package r-cran-pkgkitten. 251s Preparing to unpack .../205-r-cran-pkgkitten_0.2.4-1_all.deb ... 251s Unpacking r-cran-pkgkitten (0.2.4-1) ... 251s Selecting previously unselected package r-cran-rcpp. 251s Preparing to unpack .../206-r-cran-rcpp_1.0.14-1_amd64.deb ... 251s Unpacking r-cran-rcpp (1.0.14-1) ... 251s Selecting previously unselected package r-cran-later. 251s Preparing to unpack .../207-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 251s Unpacking r-cran-later (1.4.1+dfsg-1) ... 251s Selecting previously unselected package r-cran-promises. 251s Preparing to unpack .../208-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 251s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 251s Selecting previously unselected package r-cran-httpuv. 251s Preparing to unpack .../209-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 251s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 251s Selecting previously unselected package libjs-mathjax. 251s Preparing to unpack .../210-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 251s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 252s Selecting previously unselected package r-cran-knitr. 252s Preparing to unpack .../211-r-cran-knitr_1.49+dfsg-1_all.deb ... 252s Unpacking r-cran-knitr (1.49+dfsg-1) ... 252s Selecting previously unselected package r-cran-units. 252s Preparing to unpack .../212-r-cran-units_0.8-5+dfsg-1_amd64.deb ... 252s Unpacking r-cran-units (0.8-5+dfsg-1) ... 252s Selecting previously unselected package r-cran-wk. 252s Preparing to unpack .../213-r-cran-wk_0.9.4-1_amd64.deb ... 252s Unpacking r-cran-wk (0.9.4-1) ... 252s Selecting previously unselected package r-cran-s2. 252s Preparing to unpack .../214-r-cran-s2_1.1.7-1_amd64.deb ... 252s Unpacking r-cran-s2 (1.1.7-1) ... 252s Selecting previously unselected package r-cran-sf. 252s Preparing to unpack .../215-r-cran-sf_1.0-19+dfsg-1_amd64.deb ... 252s Unpacking r-cran-sf (1.0-19+dfsg-1) ... 252s Selecting previously unselected package r-cran-lwgeom. 252s Preparing to unpack .../216-r-cran-lwgeom_0.2-14-1_amd64.deb ... 252s Unpacking r-cran-lwgeom (0.2-14-1) ... 252s Selecting previously unselected package r-cran-maps. 252s Preparing to unpack .../217-r-cran-maps_3.4.2.1-1_amd64.deb ... 252s Unpacking r-cran-maps (3.4.2.1-1) ... 252s Selecting previously unselected package r-cran-microbenchmark. 252s Preparing to unpack .../218-r-cran-microbenchmark_1.5.0-1_amd64.deb ... 252s Unpacking r-cran-microbenchmark (1.5.0-1) ... 252s Selecting previously unselected package r-cran-nanoarrow. 252s Preparing to unpack .../219-r-cran-nanoarrow_0.6.0-1_amd64.deb ... 252s Unpacking r-cran-nanoarrow (0.6.0-1) ... 252s Selecting previously unselected package r-cran-pbapply. 252s Preparing to unpack .../220-r-cran-pbapply_1.7-2-1_all.deb ... 252s 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up r-cran-goftest (1.2-3-1) ... 258s Setting up r-cran-askpass (1.2.1-1) ... 258s Setting up r-cran-fastmap (1.2.0-1) ... 258s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 258s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 258s Setting up r-cran-sp (1:2.2-0+dfsg-1) ... 258s Setting up r-cran-utf8 (1.2.4-1) ... 258s Setting up r-cran-colorspace (2.1-1+dfsg-1) ... 258s Setting up r-cran-stringi (1.8.4-1build1) ... 258s Setting up r-cran-rex (1.2.1-1) ... 258s Setting up r-cran-cpp11 (0.5.2-1) ... 258s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 258s Setting up r-cran-isoband (0.2.7-1) ... 258s Setting up r-cran-waldo (0.6.1-2) ... 258s Setting up r-cran-gtable (0.3.6+dfsg-1) ... 258s Setting up r-cran-units (0.8-5+dfsg-1) ... 258s Setting up r-cran-later (1.4.1+dfsg-1) ... 258s Setting up r-cran-matrix (1.7-3-1) ... 258s Setting up r-cran-spatstat.sparse (3.1-0-1) ... 258s Setting up r-cran-htmltools (0.5.8.1-1) ... 258s Setting up r-cran-tinytex (0.56-1) ... 258s Setting up r-cran-kernsmooth (2.23-26-1) ... 258s Setting up r-cran-knitr (1.49+dfsg-1) ... 258s Setting up r-cran-mgcv (1.9-1-1) ... 258s Setting up r-cran-rpostgresql (0.7-7+dfsg-1) ... 258s Setting up r-cran-cachem (1.1.0-1) ... 258s Setting up r-cran-sass (0.4.9+dfsg-1) ... 258s Setting up r-cran-vctrs (0.6.5-1) ... 258s Setting up r-cran-pillar (1.10.1+dfsg-1) ... 258s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 258s Setting up r-cran-stringr (1.5.1-1) ... 258s Setting up r-cran-class (7.3-23-1) ... 258s Setting up r-cran-callr (3.7.6-1) ... 258s Setting up r-cran-desc (1.4.3-1) ... 258s Setting up r-cran-munsell (0.5.1-1) ... 258s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 258s Setting up r-cran-fontawesome (0.5.3-1) ... 258s Setting up r-cran-survival (3.8-3-1) ... 258s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 258s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 258s Setting up r-cran-httr (1.4.7+dfsg-1) ... 258s Setting up r-cran-scales (1.3.0-1) ... 258s Setting up r-cran-memoise (2.0.1-1) ... 258s Setting up r-cran-covr (3.6.4+dfsg-1) ... 258s Setting up r-cran-promises (1.3.2+dfsg-1) ... 258s Setting up r-cran-purrr (1.0.4-1) ... 258s Setting up r-cran-e1071 (1.7-16-1) ... 258s Setting up r-cran-spatstat.data (3.1-4-1) ... 258s Setting up r-cran-blob (1.2.4-1) ... 258s Setting up r-cran-spatstat.geom (3.3-5-1) ... 258s Setting up r-cran-pkgbuild (1.4.6-1) ... 258s Setting up r-cran-dplyr (1.1.4-4) ... 258s Setting up r-cran-rsqlite (2.3.9-1) ... 258s Setting up r-cran-pkgload (1.4.0-1) ... 258s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 258s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 258s Setting up r-cran-rpart (4.1.24-1) ... 258s Setting up r-cran-spatstat.random (3.3-2-1) ... 258s Setting up r-cran-testthat (3.2.3-1) ... 258s Setting up r-cran-classint (0.4-11+dfsg-1) ... 258s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 258s Setting up r-cran-spatstat.explore (3.3-4-1) ... 258s Setting up r-cran-tidyr (1.3.1-1) ... 258s Setting up r-cran-spatstat.model (3.3-4-1) ... 258s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 258s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 258s Setting up r-cran-spatstat.linnet (3.2-5-1) ... 258s Setting up r-cran-spatstat (3.3-1-1) ... 258s Setting up libheif-plugin-aomdec:amd64 (1.19.7-1) ... 258s Setting up libheif-plugin-libde265:amd64 (1.19.7-1) ... 258s Setting up libheif1:amd64 (1.19.7-1) ... 258s Setting up libgdal36:amd64 (3.10.2+dfsg-1build3) ... 258s Setting up r-cran-sf (1.0-19+dfsg-1) ... 258s Setting up r-cran-stars (0.6-8-1) ... 258s Setting up r-cran-lwgeom (0.2-14-1) ... 258s Setting up r-cran-terra (1.8-29-1) ... 258s Setting up r-cran-raster (3.6-31-1) ... 258s Processing triggers for install-info (7.1.1-1) ... 258s Processing triggers for libc-bin (2.41-1ubuntu2) ... 258s Processing triggers for man-db (2.13.0-1) ... 260s autopkgtest [22:33:55]: test run-unit-test: [----------------------- 261s BEGIN TEST aggregate.R 261s 261s R version 4.4.3 (2025-02-28) -- "Trophy Case" 261s Copyright (C) 2025 The R Foundation for Statistical Computing 261s Platform: x86_64-pc-linux-gnu 261s 261s R is free software and comes with ABSOLUTELY NO WARRANTY. 261s You are welcome to redistribute it under certain conditions. 261s Type 'license()' or 'licence()' for distribution details. 261s 261s R is a collaborative project with many contributors. 261s Type 'contributors()' for more information and 261s 'citation()' on how to cite R or R packages in publications. 261s 261s Type 'demo()' for some demos, 'help()' for on-line help, or 261s 'help.start()' for an HTML browser interface to help. 261s Type 'q()' to quit R. 261s 261s > ## IGNORE_RDIFF_BEGIN 261s > library(sf) 261s > ## IGNORE_RDIFF_END 261s > # aggregate 261s > pl1 = st_polygon(list(rbind(c(0,0),c(1,0),c(1,1),c(0,0)))) 261s > pl2 = st_polygon(list(rbind(c(0,0),c(1,1),c(0,1),c(0,0)))) 261s > s = st_sf(a = 1:2, geom = st_sfc(pl1, pl2)) 261s Linking to GEOS 3.13.1, GDAL 3.10.2, PROJ 9.5.1; sf_use_s2() is TRUE 261s WARNING: different compile-time and runtime versions for GEOS found: 261s Linked against: 3.13.1-CAPI-1.19.2 compiled against: 3.13.0-CAPI-1.19.0 261s It is probably a good idea to reinstall sf (and maybe lwgeom too) 261s > (a = aggregate(s, list(c(1,1)), mean, do_union = FALSE)) 261s Simple feature collection with 1 feature and 2 fields 261s Attribute-geometry relationships: aggregate (1), identity (1) 261s Geometry type: MULTIPOLYGON 261s Dimension: XY 261s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 261s CRS: NA 261s Group.1 a geometry 261s 1 1 1.5 MULTIPOLYGON (((0 0, 1 0, 1... 261s > (a = aggregate(s, list(c(1,1)), mean, do_union = TRUE)) 261s Simple feature collection with 1 feature and 2 fields 261s Attribute-geometry relationships: aggregate (1), identity (1) 261s Geometry type: POLYGON 261s Dimension: XY 261s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 261s CRS: NA 261s Group.1 a geometry 261s 1 1 1.5 POLYGON ((1 0, 0 0, 0 1, 1 ... 261s > # expect_warning(st_cast(a, "POINT")) 261s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) { 261s + demo(meuse_sf, echo = FALSE, ask = FALSE) 261s + a = aggregate(meuse_sf, list(meuse_sf$soil), mean) 261s + print(attributes(a)$agr) 261s + a = aggregate(meuse_sf, list(soil = meuse_sf$soil), mean) 261s + print(attributes(a)$agr) 261s + a = aggregate(meuse_sf, list(meuse_sf$soil, meuse_sf$ffreq), mean) 261s + print(attributes(a)$agr) 261s + a = aggregate(meuse_sf, list(soil = meuse_sf$soil, ff = meuse_sf$ffreq), mean) 261s + print(attributes(a)$agr) 261s + } 261s Group.1 cadmium copper lead zinc elev dist om 261s identity aggregate aggregate aggregate aggregate aggregate aggregate aggregate 261s ffreq soil lime landuse dist.m 261s aggregate aggregate aggregate aggregate aggregate 261s Levels: constant aggregate identity 261s soil cadmium copper lead zinc elev dist om 261s identity aggregate aggregate aggregate aggregate aggregate aggregate aggregate 261s ffreq soil.1 lime landuse dist.m 261s aggregate aggregate aggregate aggregate aggregate 261s Levels: constant aggregate identity 261s Group.1 Group.2 cadmium copper lead zinc elev dist 261s identity identity aggregate aggregate aggregate aggregate aggregate aggregate 261s om ffreq soil lime landuse dist.m 261s aggregate aggregate aggregate aggregate aggregate aggregate 261s Levels: constant aggregate identity 262s There were 50 or more warnings (use warnings() to see the first 50) 262s soil ff cadmium copper lead zinc elev dist 262s identity identity aggregate aggregate aggregate aggregate aggregate aggregate 262s om ffreq soil.1 lime landuse dist.m 262s aggregate aggregate aggregate aggregate aggregate aggregate 262s Levels: constant aggregate identity 262s > 262s > # aggregate by sf/sfc 262s > a = st_polygon(list(rbind(c(0,0), c(1,0), c(1,1), c(0,1), c(0,0)))) * 2 262s > b = a + 1 262s > p = st_sfc(st_point(c(0.1,0.1)), st_point(c(1.5,1.5)), st_point(c(2.9,2.9))) 262s > x = st_sf(count = 1:3, geom = p) 262s > aggregate(x, st_sfc(a,b), mean) 262s Simple feature collection with 2 features and 1 field 262s Geometry type: POLYGON 262s Dimension: XY 262s Bounding box: xmin: 0 ymin: 0 xmax: 3 ymax: 3 262s CRS: NA 262s count geometry 262s 1 1.5 POLYGON ((0 0, 2 0, 2 2, 0 ... 262s 2 2.5 POLYGON ((1 1, 3 1, 3 3, 1 ... 262s > aggregate(x, st_sf(st_sfc(a,b)), mean) 262s Simple feature collection with 2 features and 1 field 262s Geometry type: POLYGON 262s Dimension: XY 262s Bounding box: xmin: 0 ymin: 0 xmax: 3 ymax: 3 262s CRS: NA 262s count geometry 262s 1 1.5 POLYGON ((0 0, 2 0, 2 2, 0 ... 262s 2 2.5 POLYGON ((1 1, 3 1, 3 3, 1 ... 262s > aggregate(x, st_sf(st_sfc(a,b,b+10)), mean) 262s Simple feature collection with 3 features and 1 field 262s Geometry type: POLYGON 262s Dimension: XY 262s Bounding box: xmin: 0 ymin: 0 xmax: 13 ymax: 13 262s CRS: NA 262s count geometry 262s 1 1.5 POLYGON ((0 0, 2 0, 2 2, 0 ... 262s 2 2.5 POLYGON ((1 1, 3 1, 3 3, 1 ... 262s 3 NA POLYGON ((11 11, 13 11, 13 ... 262s > 262s END TEST aggregate.R with result 0 262s BEGIN TEST cast.R 262s 262s R version 4.4.3 (2025-02-28) -- "Trophy Case" 262s Copyright (C) 2025 The R Foundation for Statistical Computing 262s Platform: x86_64-pc-linux-gnu 262s 262s R is free software and comes with ABSOLUTELY NO WARRANTY. 262s You are welcome to redistribute it under certain conditions. 262s Type 'license()' or 'licence()' for distribution details. 262s 262s R is a collaborative project with many contributors. 262s Type 'contributors()' for more information and 262s 'citation()' on how to cite R or R packages in publications. 262s 262s Type 'demo()' for some demos, 'help()' for on-line help, or 262s 'help.start()' for an HTML browser interface to help. 262s Type 'q()' to quit R. 262s 262s > suppressPackageStartupMessages(library(sf)) 262s > library(testthat) 262s > # "vertical" conversions: 262s > # column 1: 262s > mp = st_sfc(st_multipoint(matrix(0:3,,2)), st_multipoint(matrix(10:15,,2))) 262s > (ls = st_cast(mp, "LINESTRING")) 262s Geometry set for 2 features 262s Geometry type: LINESTRING 262s Dimension: XY 262s Bounding box: xmin: 0 ymin: 2 xmax: 12 ymax: 15 262s CRS: NA 262s LINESTRING (0 2, 1 3) 262s LINESTRING (10 13, 11 14, 12 15) 262s > st_cast(ls, "MULTIPOINT") 262s Geometry set for 2 features 262s Geometry type: MULTIPOINT 262s Dimension: XY 262s Bounding box: xmin: 0 ymin: 2 xmax: 12 ymax: 15 262s CRS: NA 262s MULTIPOINT ((0 2), (1 3)) 262s MULTIPOINT ((10 13), (11 14), (12 15)) 262s > 262s > # column 2: 262s > mls = st_sfc(st_multilinestring(list(rbind(c(0,0), c(10,0), c(10,10), c(0,10)), 262s + rbind(c(5,5),c(5,6), c(6,6), c(6,5)))), 262s + st_multilinestring(list(rbind(c(0,0), c(1,0), c(1,1), c(0,1))))) 262s > (pol = st_cast(mls, "POLYGON")) 262s Geometry set for 2 features 262s Geometry type: POLYGON 262s Dimension: XY 262s Bounding box: xmin: 0 ymin: 0 xmax: 10 ymax: 10 262s CRS: NA 262s POLYGON ((0 0, 10 0, 10 10, 0 10, 0 0), (5 5, 5... 262s POLYGON ((0 0, 1 0, 1 1, 0 1, 0 0)) 262s > st_cast(pol, "MULTILINESTRING") 262s Geometry set for 2 features 262s Geometry type: MULTILINESTRING 262s Dimension: XY 262s Bounding box: xmin: 0 ymin: 0 xmax: 10 ymax: 10 262s CRS: NA 262s MULTILINESTRING ((0 0, 10 0, 10 10, 0 10, 0 0),... 262s MULTILINESTRING ((0 0, 1 0, 1 1, 0 1, 0 0)) 262s > 262s > # "horizontal" conversions: 262s > 262s > (pt = st_cast(mp, "POINT")) 262s Geometry set for 5 features 262s Geometry type: POINT 262s Dimension: XY 262s Bounding box: xmin: 0 ymin: 2 xmax: 12 ymax: 15 262s CRS: NA 262s > (i = attr(pt, "ids")) 262s [1] 2 3 262s > (xx = st_cast(pt, "MULTIPOINT", rep(seq_along(i), i))) 262s Geometry set for 5 features 262s Geometry type: MULTIPOINT 262s Dimension: XY 262s Bounding box: xmin: 0 ymin: 2 xmax: 12 ymax: 15 262s CRS: NA 262s > try(yy <- st_cast(pt, "LINESTRING", rep(seq_along(i), i))) 262s > 262s > #(zz = st_cast(yy, "MULTILINESTRING")) 262s > #(zz = st_cast(yy, "POLYGON")) 262s > 262s > st_cast(mls, "LINESTRING") 262s Geometry set for 3 features 262s Geometry type: LINESTRING 262s Dimension: XY 262s Bounding box: xmin: 0 ymin: 0 xmax: 10 ymax: 10 262s CRS: NA 262s > 262s > (g = st_sfc(c(mls, ls))) 262s Geometry set for 4 features 262s Geometry type: GEOMETRY 262s Dimension: XY 262s Bounding box: xmin: 0 ymin: 0 xmax: 12 ymax: 15 262s CRS: NA 262s > st_cast(g, "MULTILINESTRING") 262s POINT (0 2) 262s POINT (1 3) 262s POINT (10 13) 262s POINT (11 14) 262s POINT (12 15) 262s MULTIPOINT ((0 2)) 262s MULTIPOINT ((1 3)) 262s MULTIPOINT ((10 13)) 262s MULTIPOINT ((11 14)) 262s MULTIPOINT ((12 15)) 262s LINESTRING (0 0, 10 0, 10 10, 0 10) 262s LINESTRING (5 5, 5 6, 6 6, 6 5) 262s LINESTRING (0 0, 1 0, 1 1, 0 1) 262s MULTILINESTRING ((0 0, 10 0, 10 10, 0 10), (5 5... 262s MULTILINESTRING ((0 0, 1 0, 1 1, 0 1)) 262s LINESTRING (0 2, 1 3) 262s LINESTRING (10 13, 11 14, 12 15) 262s MULTILINESTRING ((0 0, 10 0, 10 10, 0 10), (5 5... 262s MULTILINESTRING ((0 0, 1 0, 1 1, 0 1)) 262s MULTILINESTRING ((0 2, 1 3)) 262s MULTILINESTRING ((10 13, 11 14, 12 15)) 262s Geometry set for 4 features 262s Geometry type: MULTILINESTRING 262s Dimension: XY 262s Bounding box: xmin: 0 ymin: 0 xmax: 12 ymax: 15 262s CRS: NA 262s > expect_warning(st_cast(g, "LINESTRING")) 263s > st_cast(st_cast(g, "MULTILINESTRING"), "LINESTRING") # will not loose 263s Geometry set for 5 features 263s Geometry type: LINESTRING 263s Dimension: XY 263s Bounding box: xmin: 0 ymin: 0 xmax: 12 ymax: 15 263s CRS: NA 263s LINESTRING (0 0, 10 0, 10 10, 0 10) 263s LINESTRING (5 5, 5 6, 6 6, 6 5) 263s LINESTRING (0 0, 1 0, 1 1, 0 1) 263s LINESTRING (0 2, 1 3) 263s LINESTRING (10 13, 11 14, 12 15) 263s > 263s > gc = st_sfc(st_geometrycollection( 263s + list( 263s + st_multilinestring(list(rbind(c(0,0), c(10,0), c(10,10), c(0,10)), 263s + rbind(c(5,5),c(5,6), c(6,6), c(6,5)))), 263s + st_multilinestring(list(rbind(c(0,0), c(1,0), c(1,1), c(0,1)))), 263s + st_point(0:1) 263s + ))) 263s > try(st_cast(mls, "POINT")) 263s Geometry set for 12 features 263s Geometry type: POINT 263s Dimension: XY 263s Bounding box: xmin: 0 ymin: 0 xmax: 10 ymax: 10 263s CRS: NA 263s First 5 geometries: 263s POINT (0 0) 263s POINT (10 0) 263s POINT (10 10) 263s POINT (0 10) 263s POINT (5 5) 263s > try(st_cast(mls, "MULTIPOINT")) 263s Geometry set for 3 features 263s Geometry type: MULTIPOINT 263s Dimension: XY 263s Bounding box: xmin: 0 ymin: 0 xmax: 10 ymax: 10 263s CRS: NA 263s MULTIPOINT ((0 0), (10 0), (10 10), (0 10)) 263s MULTIPOINT ((5 5), (5 6), (6 6), (6 5)) 263s > 263s > outer = matrix(c(0,0,10,0,10,10,0,10,0,0),ncol=2, byrow=TRUE) 263s > hole1 = matrix(c(1,1,1,2,2,2,2,1,1,1),ncol=2, byrow=TRUE) 263s > hole2 = matrix(c(5,5,5,6,6,6,6,5,5,5),ncol=2, byrow=TRUE) 263s > pol1 = list(outer, hole1, hole2) 263s > pol2 = list(outer + 12, hole1 + 12) 263s MULTIPOINT ((0 0), (1 0), (1 1), (0 1)) 263s > pol3 = list(outer + 24) 263s > mp = list(pol1,pol2,pol3) 263s > mp1 = st_multipolygon(mp) 263s > s = st_sfc(mp1) 263s > x = st_cast(s, "MULTIPOINT") 263s > x = st_cast(s, "POINT") 263s > expect_warning(st_cast(mp1, "LINESTRING")) 263s > expect_warning(st_cast(mp1, "POINT")) 263s > mls = mls[[1]] 263s > class(mls) 263s [1] "XY" "MULTILINESTRING" "sfg" 263s > #expect_error(st_cast(mls, "POLYGON")) 263s > st_cast(mls, "POLYGON") 263s > 263s > expect_warning(st_cast(mls, "POINT")) 263s POLYGON ((0 0, 10 0, 10 10, 0 10, 0 0), (5 5, 5 6, 6 6, 6 5, 5 5)) 263s > p1 = st_polygon(pol1) 263s > expect_warning(st_cast(p1, "POINT")) 263s > ls = ls[[1]] 263s > class(ls) 263s [1] "XY" "LINESTRING" "sfg" 263s > expect_warning(st_cast(ls, "POINT")) 263s > 263s > mls = st_cast(p1, "MULTILINESTRING") 263s > p2 = st_cast(mls, "POLYGON") 263s > 263s > # st_is: 263s > st_is(st_point(0:1), "POINT") 263s [1] TRUE 263s > sfc = st_sfc(st_point(0:1), st_linestring(matrix(1:6,,2))) 263s > st_is(sfc, "POINT") 263s [1] TRUE FALSE 263s > st_is(sfc, "POLYGON") 263s [1] FALSE FALSE 263s > st_is(sfc, "LINESTRING") 263s [1] FALSE TRUE 263s > st_is(st_sf(a = 1:2, sfc), "LINESTRING") 263s [1] FALSE TRUE 263s > st_is(sfc, c("POINT", "LINESTRING")) 263s [1] TRUE TRUE 263s > 263s > #1194: 263s > wkt <- "MULTICURVE (COMPOUNDCURVE (LINESTRING (-83.62333 35.55244, -83.62328 35.55232, -83.62323 35.55223, -83.62319 35.55216, -83.62312 35.55209, -83.6231 35.55207), CIRCULARSTRING (-83.6231 35.55207, -83.62307 35.55205, -83.62302 35.55204), LINESTRING (-83.62302 35.55204, -83.62299 35.55203, -83.62289 35.55198, -83.62281 35.55189, -83.62271 35.55182)))" 263s > g <- st_as_sfc(wkt) 263s > g <- st_sf(demo = "test", geom = g, crs = 4326) 263s > m = st_cast(g, "MULTILINESTRING") 263s > identical(m$geom[[1]], st_cast(g$geom[[1]], "MULTILINESTRING")) 263s [1] TRUE 263s > 263s > st_cast(st_sfc(st_geometrycollection(), st_multipolygon()), 'MULTIPOLYGON') #1961 263s Geometry set for 2 features (with 2 geometries empty) 263s Geometry type: MULTIPOLYGON 263s Dimension: XY 263s Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA 263s CRS: NA 263s > st_cast(st_sfc(st_geometrycollection(), st_multipolygon(), st_point(0:1)), 'POINT') #1961 263s Geometry set for 3 features (with 2 geometries empty) 263s Geometry type: POINT 263s MULTIPOLYGON EMPTY 263s MULTIPOLYGON EMPTY 263s Dimension: XY 263s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 263s CRS: NA 263s > 263s POINT EMPTY 263s POINT EMPTY 263s POINT (0 1) 263s END TEST cast.R with result 0 263s BEGIN TEST crs.R 263s 263s R version 4.4.3 (2025-02-28) -- "Trophy Case" 263s Copyright (C) 2025 The R Foundation for Statistical Computing 263s Platform: x86_64-pc-linux-gnu 263s 263s R is free software and comes with ABSOLUTELY NO WARRANTY. 263s You are welcome to redistribute it under certain conditions. 263s Type 'license()' or 'licence()' for distribution details. 263s 263s R is a collaborative project with many contributors. 263s Type 'contributors()' for more information and 263s 'citation()' on how to cite R or R packages in publications. 263s 263s Type 'demo()' for some demos, 'help()' for on-line help, or 263s 'help.start()' for an HTML browser interface to help. 263s Type 'q()' to quit R. 263s 263s > suppressPackageStartupMessages(library(sf)) 263s > options(rgdal_show_exportToProj4_warnings = "none") 263s > suppressWarnings(st_crs(-1)) 263s Coordinate Reference System: NA 263s > suppressWarnings(st_crs(999999)) 263s Coordinate Reference System: NA 263s > inherits(try(st_crs("error"), silent = TRUE), "try-error") 263s [1] TRUE 263s > str = "+proj=sterea +lat_0=52.15616055555555 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +towgs84=565.4171,50.3319,465.5524,-0.398957388243134,0.343987817378283,-1.87740163998045,4.0725 +units=m +no_defs" 263s > x <- st_crs(str) 263s > x<- st_crs(3857) 263s > str = st_crs(3857)$proj4string 263s > st_crs(3857)$units 263s [1] "m" 263s > x = st_crs("+proj=longlat +datum=WGS84") 263s > x = st_crs(4326) 263s > x = st_crs("+proj=laea") # no EPSG 263s > 263s > x = st_sfc(st_point(0:1)) 263s > y = st_crs(x, parameters = TRUE) 263s > st_crs(x) = 4326 263s > y = st_crs(x, parameters = TRUE) 263s > 263s > from = st_crs(4326)$proj4string 263s > to = st_crs(3857)$proj4string 263s > ret = sf_project(from, to, rbind(c(0,0), c(1,1))) 263s > round(ret, 7) 263s [,1] [,2] 263s [1,] 0.0 0.0 263s [2,] 111319.5 111325.1 263s > # create Inf points: #1227/#1228 263s > suppressWarnings( 263s + sf_project("+proj=longlat", "+proj=lcc +lat_1=30 +lat_2=60", cbind(c(0,0),c(-80,-90)), keep = TRUE) 263s + ) 263s [,1] [,2] 263s [1,] 0 -53554590 263s [2,] NA NA 263s > sf_project(to, from, ret) 263s [,1] [,2] 263s [1,] 0 0 263s [2,] 1 1 263s > suppressWarnings( 263s + sf_project("+proj=longlat", "+proj=lcc +lat_1=30 +lat_2=60", cbind(c(0,0),c(-80,-90)), keep = TRUE) 263s + ) 263s [,1] [,2] 263s [1,] 0 -53554590 263s [2,] NA NA 263s > st_transform(st_sfc(st_point(c(0,0)), st_point(c(1,1)), crs = 4326), 3857) 263s Geometry set for 2 features 263s Geometry type: POINT 263s Dimension: XY 263s Bounding box: xmin: 0 ymin: 0 xmax: 111319.5 ymax: 111325.1 263s Projected CRS: WGS 84 / Pseudo-Mercator 263s POINT (0 0) 263s POINT (111319.5 111325.1) 263s > if (sf_extSoftVersion()["USE_PROJ_H"] == "true" || sf_proj_info("have_datum_files")) { 263s + "datum files installed" 263s + } else { 263s + "datum files not installed" 263s + } 263s [1] "datum files installed" 263s > 263s > # https://github.com/r-spatial/sf/issues/1170 263s > g = st_as_sfc("POLYGON ((-61.66957 10.69214, -61.565 10.75728, -61.37453 10.77654, -61.40721 10.60681, -61.66957 10.69214))") 263s > d = st_as_sf(data.frame(id=1, geometry=g), crs=4326) 263s > st_area(d) 263s 350534486 [m^2] 263s > st_area(st_transform(d, 2314)) 264s 349124497 [m^2] 264s > 264s > st_axis_order() 264s [1] FALSE 264s > if (compareVersion(sf_extSoftVersion()["GDAL"], "2.5.0") > -1) 264s + st_axis_order(TRUE) 264s > st_axis_order(FALSE) 264s > 264s END TEST crs.R with result 0 264s BEGIN TEST dist.R 264s 264s R version 4.4.3 (2025-02-28) -- "Trophy Case" 264s Copyright (C) 2025 The R Foundation for Statistical Computing 264s Platform: x86_64-pc-linux-gnu 264s 264s R is free software and comes with ABSOLUTELY NO WARRANTY. 264s You are welcome to redistribute it under certain conditions. 264s Type 'license()' or 'licence()' for distribution details. 264s 264s R is a collaborative project with many contributors. 264s Type 'contributors()' for more information and 264s 'citation()' on how to cite R or R packages in publications. 264s 264s Type 'demo()' for some demos, 'help()' for on-line help, or 264s 'help.start()' for an HTML browser interface to help. 264s Type 'q()' to quit R. 264s 264s > suppressPackageStartupMessages(library(sf)) 264s > suppressPackageStartupMessages(library(units)) 264s > 264s > x = st_sfc( 264s + st_point(c(0,0)), 264s + st_point(c(1,0)), 264s + st_point(c(2,0)), 264s + st_point(c(3,0)), 264s + crs = 4326 264s + ) 264s > 264s > y = st_sfc( 264s + st_point(c(0,10)), 264s + st_point(c(1,0)), 264s + st_point(c(2,0)), 264s + st_point(c(3,0)), 264s + st_point(c(4,0)), 264s + crs = 4326 264s + ) 264s > 264s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) { 264s + d.sf = st_distance(x, y) 264s + d.sp = spDists(as(x, "Spatial"), as(y, "Spatial")) 264s + units(d.sp) = as_units("km") 264s + print(round(d.sf - d.sp, 7)) 264s + 264s + #summary(unclass(d.sf) - d.sp) 264s + 264s + st_crs(x) = st_crs(y) = NA 264s + d.sf = st_distance(x, y) 264s + d.sp = spDists(as(x, "Spatial"), as(y, "Spatial")) 264s + print(round(d.sf - d.sp, 7)) 264s + } 264s Units: [m] 264s [,1] [,2] [,3] [,4] [,5] 264s [1,] 6107.765 -124.3896 -248.7792 -373.1688 -497.5585 264s [2,] 6065.138 0.0000 -124.3896 -248.7792 -373.1688 264s [3,] 5940.569 -124.3896 0.0000 -124.3896 -248.7792 264s [4,] 5743.252 -248.7792 -124.3896 0.0000 -124.3896 264s [,1] [,2] [,3] [,4] [,5] 264s [1,] 0 0 0 0 0 264s [2,] 0 0 0 0 0 264s [3,] 0 0 0 0 0 264s [4,] 0 0 0 0 0 264s > 264s > # st_length: 264s > st_crs(y) = 4326 264s > (z = st_sfc(st_linestring(rbind(c(0,10), c(1,0), c(2,0), c(3,0), c(4,0))), crs = 4326)) 264s Geometry set for 1 feature 264s Geometry type: LINESTRING 264s Dimension: XY 264s Bounding box: xmin: 0 ymin: 0 xmax: 4 ymax: 10 264s Geodetic CRS: WGS 84 264s LINESTRING (0 10, 1 0, 2 0, 3 0, 4 0) 264s > d = st_distance(y, y) 264s > round(d, 7) 264s Units: [m] 264s [,1] [,2] [,3] [,4] [,5] 264s [1,] 0 1117440.6 1133750.1 1160423.1 1196767.0 264s [2,] 1117441 0.0 111195.1 222390.2 333585.3 264s [3,] 1133750 111195.1 0.0 111195.1 222390.2 264s [4,] 1160423 222390.2 111195.1 0.0 111195.1 264s [5,] 1196767 333585.3 222390.2 111195.1 0.0 264s > st_length(z) 264s 1451026 [m] 264s > round(st_length(z) - sum(d[1,2], d[2,3], d[3,4], d[4,5]), 7) 264s 0 [m] 264s > 264s > # st_line_sample: 264s > ls = st_sfc(st_linestring(rbind(c(0,0),c(0,1))), 264s + st_linestring(rbind(c(0,0),c(10,0)))) 264s > # set.seed(135) 264s > st_line_sample(ls, density = 1) 264s Geometry set for 2 features 264s Geometry type: MULTIPOINT 264s Dimension: XY 264s Bounding box: xmin: 0 ymin: 0 xmax: 9.5 ymax: 0.5 264s MULTIPOINT ((0 0.5)) 264s MULTIPOINT ((0.5 0), (1.5 0), (2.5 0), (3.5 0),... 264s Error in st_line_sample(ls, density = 1/1000) : 264s st_line_sample for longitude/latitude not supported; use st_segmentize? 264s CRS: NA 264s > 264s > ls = st_sfc(st_linestring(rbind(c(0,0),c(0,1))), 264s + st_linestring(rbind(c(0,0),c(.1,0))), crs = 4326) 264s > 264s > st_length(ls) 264s Units: [m] 264s [1] 111195.10 11119.51 264s > try(st_line_sample(ls, density = 1/1000)) 264s > x = st_line_sample(st_transform(ls, 3857), density = 1/1000) # one per km 264s > 264s END TEST dist.R with result 0 264s BEGIN TEST dplyr.R 264s 264s R version 4.4.3 (2025-02-28) -- "Trophy Case" 264s Copyright (C) 2025 The R Foundation for Statistical Computing 264s Platform: x86_64-pc-linux-gnu 264s 264s R is free software and comes with ABSOLUTELY NO WARRANTY. 264s You are welcome to redistribute it under certain conditions. 264s Type 'license()' or 'licence()' for distribution details. 264s 264s R is a collaborative project with many contributors. 264s Type 'contributors()' for more information and 264s 'citation()' on how to cite R or R packages in publications. 264s 264s Type 'demo()' for some demos, 'help()' for on-line help, or 264s 'help.start()' for an HTML browser interface to help. 264s Type 'q()' to quit R. 264s 265s > suppressPackageStartupMessages(library(sf)) 265s > 265s > if (require(dplyr, quietly = TRUE)) { 265s + options(dplyr.summarise.inform=FALSE) 265s + read_sf(system.file("shape/nc.shp", package="sf"), quiet = TRUE) %>% 265s + st_transform(3857) -> nc 265s + nc %>% filter(AREA > .1) %>% plot() 265s + 265s + # plot 10 smallest counties in grey: 265s + nc %>% 265s + select(BIR74, geometry) %>% 265s + plot() 265s + 265s + nc %>% 265s + select(AREA, geometry) %>% 265s + arrange(AREA) %>% 265s + slice(1:10) %>% 265s + plot(add = TRUE, col = 'grey', main ="") 265s + 265s + # select: check both when geometry is part of the selection, and when not: 265s + nc %>% select(SID74, SID79) %>% names() 265s + nc %>% select(SID74, SID79, geometry) %>% names() 265s + nc %>% select(SID74, SID79) %>% class() 265s + nc %>% select(SID74, SID79, geometry) %>% class() 265s + 265s + # group_by: 265s + nc$area_cl = cut(nc$AREA, c(0, .1, .12, .15, .25)) 265s + nc %>% group_by(area_cl) %>% class() 265s + 265s + # mutate: 265s + nc2 <- nc %>% mutate(area10 = AREA/10) 265s + 265s + # transmute: 265s + nc %>% transmute(AREA = AREA/10, geometry = geometry) %>% class() 265s + nc %>% transmute(AREA = AREA/10) %>% class() 265s + 265s + # rename: 265s + nc2 <- nc %>% rename(area = AREA) 265s + 265s + # distinct: 265s + nc[c(1:100,1:10),] %>% distinct() %>% nrow() 265s + 265s + # summarize: 265s + nc$area_cl = cut(nc$AREA, c(0, .1, .12, .15, .25)) 265s + nc.g <- nc %>% group_by(area_cl) 265s + nc.g %>% summarise(mean(AREA)) 265s + nc.g %>% summarize(mean(AREA)) %>% plot(col = 3:6/7) 265s + 265s + library(tidyr) 265s + 265s + # time-wide to long table, using tidyr::gather 265s + # stack the two SID columns for the July 1, 1974 - June 30, 1978 and July 1, 1979 - June 30, 1984 periods 265s + # (see https://cran.r-project.org/web/packages/spdep/vignettes/sids.pdf) 265s + nc %>% select(SID74, SID79, geometry) %>% gather("VAR", "SID", -geometry) %>% summary() 265s + 265s + # spread: 265s + nc$row = 1:100 265s + nc.g <- nc %>% select(SID74, SID79, row) %>% gather("VAR", "SID", -row, -geometry) 265s + nc.g %>% tail() 265s + nc.g %>% spread(VAR, SID) %>% head() 265s + nc %>% select(SID74, SID79, geometry, row) %>% gather("VAR", "SID", -geometry, -row) %>% spread(VAR, SID) %>% head() 265s + 265s + # test st_set_crs in pipe: 265s + sfc = st_sfc(st_point(c(0,0)), st_point(c(1,1))) 265s + x <- sfc %>% st_set_crs(4326) %>% st_transform(3857) 265s + x 265s + 265s + read_sf(system.file("shape/nc.shp", package="sf"), quiet = TRUE) %>% 265s + st_transform(3857) -> nc 265s + nc.merc <- st_transform(nc, 32119) # NC State Plane 265s + suppressPackageStartupMessages(library(units)) 265s + install_unit("person") 265s + person = as_units("person") 265s + nc.merc <- nc.merc %>% mutate(area = st_area(nc.merc), dens = BIR74 * person / area) 265s + 265s + # summary(nc.merc$dens) # requires units 0.4-2 265s + nc.merc$area_cl <- cut(nc$AREA, c(0, .1, .12, .15, .25)) 265s + nc.grp <- nc.merc %>% group_by(area_cl) 265s + 265s + out <- nc.grp %>% summarise(A = sum(area), pop = sum(dens * area), 265s + new_dens = sum(dens * area)/sum(area)) 265s + 265s + # mean densities depend on grouping: 265s + nc.merc %>% summarize(mean(dens)) 265s + out %>% summarise(mean(new_dens)) 265s + 265s + # total densities don't: 265s + nc.merc %>% summarise(sum(area * dens)) 265s + out %>% summarise(sum(A * new_dens)) 265s + 265s + conn = system.file("gpkg/nc.gpkg", package = "sf") 265s + 265s + if (require(DBI, quietly = TRUE) && require(RSQLite, quietly = TRUE)) { 265s + con = dbConnect(SQLite(), dbname = system.file("gpkg/nc.gpkg", package = "sf")) 265s + dbReadTable(con, "nc.gpkg") %>% filter(AREA > 0.2) %>% collect %>% st_sf 265s + 265s + # nest: 265s + storms.sf = st_as_sf(storms, coords = c("long", "lat"), crs = 4326) 265s + x <- storms.sf %>% group_by(name, year) %>% nest 265s + 265s + nrow(distinct(nc[c(1,1,1,2,2,3:100),])) 265s + 265s + # set.seed(1331) 265s + nc$gp <- sample(10, 100, replace=TRUE) 265s + # Get centroid of each group of polygons; https://github.com/r-spatial/sf/issues/969 265s + nc_gp_cent <- nc %>% 265s + group_by(gp) %>% 265s + group_map(st_area) 265s + 265s + nc %>% st_filter(nc[1,]) %>% nrow 265s + } # DBI & SQLITE 265s + } # dplyr 265s 265s Attaching package: 'dplyr' 265s 265s The following objects are masked from 'package:stats': 265s 265s filter, lag 265s 265s The following objects are masked from 'package:base': 265s 265s intersect, setdiff, setequal, union 265s 267s [1] 4 267s > 267s Warning message: 267s plotting the first 10 out of 14 attributes; use max.plot = 14 to plot all 267s END TEST dplyr.R with result 0 267s BEGIN TEST empty.R 267s 267s R version 4.4.3 (2025-02-28) -- "Trophy Case" 267s Copyright (C) 2025 The R Foundation for Statistical Computing 267s Platform: x86_64-pc-linux-gnu 267s 267s R is free software and comes with ABSOLUTELY NO WARRANTY. 267s You are welcome to redistribute it under certain conditions. 267s Type 'license()' or 'licence()' for distribution details. 267s 267s R is a collaborative project with many contributors. 267s Type 'contributors()' for more information and 267s 'citation()' on how to cite R or R packages in publications. 267s 267s Type 'demo()' for some demos, 'help()' for on-line help, or 267s 'help.start()' for an HTML browser interface to help. 267s Type 'q()' to quit R. 267s 267s > suppressPackageStartupMessages(library(sf)) 267s > 267s > # create empty geometries: 267s > st_point(rep(NA_real_,2)) 267s > st_point(rep(NA_real_,3), dim = "XYZ") 267s > st_point(rep(NA_real_,3), dim = "XYM") 267s > st_point(rep(NA_real_,4), dim = "XYZM") 267s > 267s POINT EMPTY 267s POINT Z EMPTY 267s POINT M EMPTY 267s POINT ZM EMPTY 267s > st_multipoint() 267s > st_multipoint(matrix(numeric(0), 0, 3), dim = "XYZ") 267s > st_multipoint(matrix(numeric(0), 0, 3), dim = "XYM") 267s > st_multipoint(matrix(numeric(0), 0, 4), dim = "XYZM") 267s > 267s > st_linestring(matrix(numeric(0), 0, 2), "XY") 267s > st_linestring(matrix(numeric(0), 0, 3), "XYZ") 267s > st_linestring(matrix(numeric(0), 0, 3), "XYM") 267s > st_linestring(matrix(numeric(0), 0, 4), "XYZM") 267s > 267s > st_multilinestring(list(), "XY") 267s > st_multilinestring(list(), "XYZ") 267s > st_multilinestring(list(), "XYM") 267s > st_multilinestring(list(), "XYZM") 267s > 267s > st_polygon(list(), "XY") 267s > st_polygon(list(), "XYZ") 267s > st_polygon(list(), "XYM") 267s > st_polygon(list(), "XYZM") 267s > 267s > st_multipolygon(list(), "XY") 267s > st_multipolygon(list(), "XYZ") 267s > st_multipolygon(list(), "XYM") 267s > st_multipolygon(list(), "XYZM") 267s > 267s > st_geometrycollection() 267s > st_geometrycollection(dim = "XYZ") 267s > st_geometrycollection(dim = "XYM") 267s > st_geometrycollection(dim = "XYZM") 267s > 267s > st_point(rep(NA_real_,2)) 267s > st_multipoint() 267s > st_linestring(matrix(numeric(0), 0, 2)) 267s > st_multilinestring(list(), "XY") 267s > st_polygon(list(), "XY") 267s > st_multipolygon(list(), "XY") 267s > st_geometrycollection(, "XY") 267s > 267s > (e1 = st_sfc( 267s + st_point(rep(NA_real_,2)), 267s + st_multipoint(), 267s + st_linestring(matrix(numeric(0), 0, 2)), 267s + st_multilinestring(list(), "XY"), 267s + st_polygon(list(), "XY"), 267s + st_multipolygon(list(), "XY"), 267s + st_geometrycollection(, "XY"))) 267s Geometry set for 7 features (with 7 geometries empty) 267s Geometry type: GEOMETRY 267s Dimension: XY 267s Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA 267s CRS: NA 267s First 5 geometries: 267s > 267s > (e2 = st_sfc(st_point(rep(NA_real_,3), "XYZ"), 267s + st_multipoint(matrix(numeric(0),0,3), dim = "XYZ"), 267s + st_linestring(matrix(numeric(0), 0, 3)), 267s + st_multilinestring(list(), "XYZ"), 267s + st_polygon(list(), "XYZ"), 267s + st_multipolygon(list(), "XYZ"), 267s + st_geometrycollection(dim = "XYZ"))) 267s Geometry set for 7 features (with 7 geometries empty) 267s Geometry type: GEOMETRY 267s Dimension: XYZ 267s Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA 267s z_range: zmin: NA zmax: NA 267s CRS: NA 267s First 5 geometries: 267s > 267s > (e3 = st_sfc(st_point(rep(NA_real_,3), "XYM"), 267s + st_multipoint(matrix(numeric(0),0,3), dim = "XYM"), 267s + st_linestring(matrix(numeric(0), 0, 3), "XYM"), 267s + st_multilinestring(list(), "XYM"), 267s + st_polygon(list(), "XYM"), 267s + st_multipolygon(list(), "XYM"), 267s + st_geometrycollection(dim = "XYM"))) 267s Geometry set for 7 features (with 7 geometries empty) 267s Geometry type: GEOMETRY 267s Dimension: XYM 267s Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA 267s m_range: mmin: NA mmax: NA 267s CRS: NA 267s First 5 geometries: 267s > 267s > (e4 = st_sfc(st_point(rep(NA_real_,4)), 267s + st_multipoint(matrix(numeric(0),0,4), dim = "XYZM"), 267s + st_linestring(matrix(numeric(0), 0, 4)), 267s + st_multilinestring(list(), "XYZM"), 267s + st_polygon(list(), "XYZM"), 267s + st_multipolygon(list(), "XYZM"), 267s + st_geometrycollection(dim = "XYZM"))) 267s Geometry set for 7 features (with 7 geometries empty) 267s Geometry type: GEOMETRY 267s Dimension: XYZM 267s Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA 267s z_range: zmin: NA zmax: NA 267s m_range: mmin: NA mmax: NA 267s CRS: NA 267s First 5 geometries: 267s > 267s > st_as_sfc(st_as_binary(e1, pureR = TRUE)) 267s Geometry set for 7 features (with 7 geometries empty) 267s Geometry type: GEOMETRY 267s Dimension: XY 267s Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA 267s CRS: NA 267s First 5 geometries: 267s > st_as_sfc(st_as_binary(e1, pureR = FALSE)) 267s Geometry set for 7 features (with 7 geometries empty) 267s Geometry type: GEOMETRY 267s Dimension: XY 267s Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA 267s CRS: NA 267s First 5 geometries: 267s > st_as_sfc(st_as_binary(e2, pureR = FALSE)) 267s Geometry set for 7 features (with 7 geometries empty) 267s Geometry type: GEOMETRY 267s Dimension: XYZ 267s Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA 267s z_range: zmin: NA zmax: NA 267s CRS: NA 267s First 5 geometries: 267s > st_as_sfc(st_as_binary(e3, pureR = FALSE)) 267s Geometry set for 7 features (with 7 geometries empty) 267s Geometry type: GEOMETRY 267s Dimension: XYM 267s Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA 267s m_range: mmin: NA mmax: NA 267s CRS: NA 267s First 5 geometries: 267s > st_as_sfc(st_as_binary(e4, pureR = FALSE)) 267s Geometry set for 7 features (with 7 geometries empty) 267s Geometry type: GEOMETRY 267s Dimension: XYZM 267s Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA 267s z_range: zmin: NA zmax: NA 267s m_range: mmin: NA mmax: NA 267s CRS: NA 267s First 5 geometries: 267s > st_as_sfc(st_as_binary(e1, pureR = FALSE)) 267s Geometry set for 7 features (with 7 geometries empty) 267s Geometry type: GEOMETRY 267s Dimension: XY 267s Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA 267s CRS: NA 267s First 5 geometries: 267s > 267s > # sfc_GEOMETRY: 267s > x = st_sfc(st_point(0:1), st_linestring(matrix(1:4,2,2))) 267s > st_intersects(x, x, sparse = FALSE) 267s [,1] [,2] 267s [1,] TRUE FALSE 267s [2,] FALSE TRUE 267s > 267s > # two empty geoms: 267s > x = st_sfc(st_multipoint(), st_linestring()) 267s > st_intersects(x, x, sparse = FALSE) 267s [,1] [,2] 267s [1,] FALSE FALSE 267s [2,] FALSE FALSE 267s > 267s > # write & read: 267s > x = st_sf(a = 2:1, geom = structure(st_sfc(st_linestring(), st_linestring(matrix(1:4,2))))) 267s > write_sf(x, "empty.gpkg") 267s > y = st_read("empty.gpkg", quiet = TRUE) 267s MULTIPOINT EMPTY 267s MULTIPOINT Z EMPTY 267s MULTIPOINT M EMPTY 267s MULTIPOINT ZM EMPTY 267s LINESTRING EMPTY 267s LINESTRING Z EMPTY 267s LINESTRING M EMPTY 267s LINESTRING ZM EMPTY 267s MULTILINESTRING EMPTY 267s MULTILINESTRING Z EMPTY 267s MULTILINESTRING M EMPTY 267s MULTILINESTRING ZM EMPTY 267s POLYGON EMPTY 267s POLYGON Z EMPTY 267s POLYGON M EMPTY 267s POLYGON ZM EMPTY 267s MULTIPOLYGON EMPTY 267s MULTIPOLYGON Z EMPTY 267s MULTIPOLYGON M EMPTY 267s MULTIPOLYGON ZM EMPTY 267s GEOMETRYCOLLECTION EMPTY 267s GEOMETRYCOLLECTION Z EMPTY 267s GEOMETRYCOLLECTION M EMPTY 267s GEOMETRYCOLLECTION ZM EMPTY 267s POINT EMPTY 267s MULTIPOINT EMPTY 267s LINESTRING EMPTY 267s MULTILINESTRING EMPTY 267s POLYGON EMPTY 267s MULTIPOLYGON EMPTY 267s GEOMETRYCOLLECTION EMPTY 267s POINT EMPTY 267s MULTIPOINT EMPTY 267s LINESTRING EMPTY 267s MULTILINESTRING EMPTY 267s POLYGON EMPTY 267s POINT Z EMPTY 267s MULTIPOINT Z EMPTY 267s LINESTRING Z EMPTY 267s MULTILINESTRING Z EMPTY 267s POLYGON Z EMPTY 267s POINT M EMPTY 267s MULTIPOINT M EMPTY 267s LINESTRING M EMPTY 267s MULTILINESTRING M EMPTY 267s POLYGON M EMPTY 267s POINT ZM EMPTY 267s MULTIPOINT ZM EMPTY 267s LINESTRING ZM EMPTY 267s MULTILINESTRING ZM EMPTY 267s POLYGON ZM EMPTY 267s POINT EMPTY 267s MULTIPOINT EMPTY 267s LINESTRING EMPTY 267s MULTILINESTRING EMPTY 267s POLYGON EMPTY 267s POINT EMPTY 267s MULTIPOINT EMPTY 267s LINESTRING EMPTY 267s MULTILINESTRING EMPTY 267s POLYGON EMPTY 267s POINT Z EMPTY 267s MULTIPOINT Z EMPTY 267s LINESTRING Z EMPTY 267s MULTILINESTRING Z EMPTY 267s POLYGON Z EMPTY 267s POINT M EMPTY 267s MULTIPOINT M EMPTY 267s LINESTRING M EMPTY 267s MULTILINESTRING M EMPTY 267s POLYGON M EMPTY 267s POINT ZM EMPTY 267s MULTIPOINT ZM EMPTY 267s LINESTRING ZM EMPTY 267s MULTILINESTRING ZM EMPTY 267s POLYGON ZM EMPTY 267s POINT EMPTY 267s MULTIPOINT EMPTY 267s LINESTRING EMPTY 267s MULTILINESTRING EMPTY 267s POLYGON EMPTY 267s writing: substituting ENGCRS["Undefined Cartesian SRS with unknown unit"] for missing CRS 267s > all.equal(x, y) 267s [1] "Component \"geom\": Attributes: < Component \"crs\": Component \"input\": 'is.NA' value mismatch: 0 in current 1 in target >" 267s [2] "Component \"geom\": Attributes: < Component \"crs\": Component \"wkt\": 'is.NA' value mismatch: 0 in current 1 in target >" 267s > 267s > # https://github.com/edzer/sfr/issues/398 : 267s > pt = st_sfc(st_point(c(0,92)), crs = 4267) 267s > robin_crs <- "+proj=robin +lon_0=0 +x_0=0 +y_0=0 +ellps=WGS84 +datum=WGS84 +units=m +no_defs" 267s > # india_crs <- "EPSG:24383" # India-centered Lambert conformal conic projection 267s > india_crs <- "+proj=lcc +lat_1=12 +lat_0=12 +lon_0=80 +k_0=0.99878641 +x_0=2743195.5 +y_0=914398.5 +a=6377299.151 +b=6356098.145120132 +towgs84=295,736,257,0,0,0,0 +units=m +no_defs" 267s > st_transform(st_transform(pt, robin_crs), india_crs)[[1]] 267s > 267s POINT EMPTY 267s END TEST empty.R with result 0 267s BEGIN TEST full.R 267s 267s R version 4.4.3 (2025-02-28) -- "Trophy Case" 267s Copyright (C) 2025 The R Foundation for Statistical Computing 267s Platform: x86_64-pc-linux-gnu 267s 267s R is free software and comes with ABSOLUTELY NO WARRANTY. 267s You are welcome to redistribute it under certain conditions. 267s Type 'license()' or 'licence()' for distribution details. 267s 267s R is a collaborative project with many contributors. 267s Type 'contributors()' for more information and 267s 'citation()' on how to cite R or R packages in publications. 267s 267s Type 'demo()' for some demos, 'help()' for on-line help, or 267s 'help.start()' for an HTML browser interface to help. 267s Type 'q()' to quit R. 267s 268s > suppressPackageStartupMessages(library(sf)) 268s > 268s > # create full polygon: 268s > (f = st_as_sfc("POLYGON FULL")) 268s Geometry set for 1 feature 268s Geometry type: POLYGON 268s POLYGON FULL 268s Spherical geometry (s2) switched off 268s Error : OGR error 268s Spherical geometry (s2) switched on 268s Dimension: XY 268s Bounding box: xmin: -180 ymin: -90 xmax: 180 ymax: 90 268s CRS: NA 268s > g = st_sfc(st_polygon(list(matrix(c(0,-90,0,-90), 2, byrow = TRUE)))) 268s > identical(f, g) 268s [1] TRUE 268s > old = sf_use_s2(FALSE) 268s > try(st_as_sfc("POLYGON FULL")) # errors 268s OGR: Corrupt data 268s > sf_use_s2(old) 268s > (f = st_as_sfc(c("POLYGON FULL", "POLYGON((0 0,1 0,1 1,0 1,0 0))"))) 268s Geometry set for 2 features 268s Geometry type: POLYGON 268s Dimension: XY 268s Bounding box: xmin: -180 ymin: -90 xmax: 180 ymax: 90 268s CRS: NA 268s > st_is_full(f) 268s [1] TRUE FALSE 268s > st_bbox(f[1]) 268s xmin ymin xmax ymax 268s -180 -90 180 90 268s > st_bbox(f[2]) 268s xmin ymin xmax ymax 268s 0 0 1 1 268s > st_is_valid(f) # full polygon NA: right, we don't know the CRS 268s [1] NA TRUE 268s > st_crs(f) = 'OGC:CRS84' # geodetic: 268s > st_is_valid(f) 268s [1] TRUE TRUE 268s > st_crs(f) = NA 268s > try(st_make_valid(f)) 268s > st_crs(f) = 'OGC:CRS84' # geodetic: 268s > st_make_valid(f) 268s POLYGON FULL 268s POLYGON ((0 0, 1 0, 1 1, 0 1, 0 0)) 268s Error in (function (msg) : 268s IllegalArgumentException: Invalid number of points in LinearRing found 2 - must be 0 or >= 3 268s POLYGON FULL 268s Geometry set for 2 features 268s Geometry type: POLYGON 268s Dimension: XY 268s Bounding box: xmin: -180 ymin: -90 xmax: 180 ymax: 90 268s Geodetic CRS: WGS 84 (CRS84) 268s > # mixed geometries: 268s > (f = st_as_sfc(c("POLYGON FULL", "POLYGON((0 0,1 0,1 1,0 1,0 0))", "POINT(3 1)"), crs = 'OGC:CRS84')) 268s POLYGON ((0 0, 1 0, 1 1, 0 1, 0 0)) 268s Geometry set for 3 features 268s Geometry type: GEOMETRY 268s Dimension: XY 268s Bounding box: xmin: -180 ymin: -90 xmax: 180 ymax: 90 268s Geodetic CRS: WGS 84 (CRS84) 268s POLYGON FULL 268s POLYGON ((0 0, 1 0, 1 1, 0 1, 0 0)) 268s POINT (3 1) 268s > st_bbox(f[1]) 268s xmin ymin xmax ymax 268s -180 -90 180 90 268s > st_bbox(f[3]) 268s xmin ymin xmax ymax 268s 3 1 3 1 268s > st_is_valid(f) 268s [1] TRUE TRUE TRUE 268s > st_make_valid(f) 268s Geometry set for 3 features 268s Geometry type: GEOMETRY 268s Dimension: XY 268s Bounding box: xmin: -180 ymin: -90 xmax: 180 ymax: 90 268s Geodetic CRS: WGS 84 (CRS84) 268s > st_make_valid(f[2:3]) 268s Geometry set for 2 features 268s Geometry type: GEOMETRY 268s Dimension: XY 268s Bounding box: xmin: 0 ymin: 0 xmax: 3 ymax: 1 268s Geodetic CRS: WGS 84 (CRS84) 268s > 268s > # roundtrip: 268s > sf = st_as_sf(data.frame(attr = 1:3, geom = f[1:3])) 268s > write_sf(sf, fn <- tempfile(fileext=".gpkg")) 268s > g = read_sf(fn) 268s POLYGON FULL 268s POLYGON ((0 0, 1 0, 1 1, 0 1, 0 0)) 268s POINT (3 1) 268s POLYGON ((0 0, 1 0, 1 1, 0 1, 0 0)) 268s POINT (3 1) 268s > g 268s Simple feature collection with 3 features and 1 field 268s Geometry type: GEOMETRY 268s Dimension: XY 268s Bounding box: xmin: -180 ymin: -90 xmax: 180 ymax: 90 268s Geodetic CRS: WGS 84 (CRS84) 268s # A tibble: 3 x 2 268s attr geom 268s 268s 1 1 POLYGON FULL 268s 2 2 POLYGON ((0 0, 1 0, 1 1, 0 1, 0 0)) 268s 3 3 POINT (3 1) 268s > 268s > st_is_empty(g) 268s [1] FALSE FALSE FALSE 268s > st_is_full(g) 268s [1] TRUE FALSE FALSE 268s > st_is_valid(g) 268s [1] TRUE TRUE TRUE 268s > st_is_simple(g) 268s [1] TRUE TRUE TRUE 268s > st_dimension(g) 268s [1] 2 2 0 268s > st_area(g) 268s Units: [m^2] 268s [1] 5.100661e+14 1.236404e+10 0.000000e+00 268s > st_length(g) 268s Units: [m] 268s [1] 0 0 0 268s > st_distance(g) 268s Units: [m] 268s [,1] [,2] [,3] 268s [1,] 0 0.0 0.0 268s [2,] 0 0.0 222356.3 268s [3,] 0 222356.3 0.0 268s > 268s END TEST full.R with result 0 268s BEGIN TEST gdal_geom.R 268s 268s R version 4.4.3 (2025-02-28) -- "Trophy Case" 268s Copyright (C) 2025 The R Foundation for Statistical Computing 268s Platform: x86_64-pc-linux-gnu 268s 268s R is free software and comes with ABSOLUTELY NO WARRANTY. 268s You are welcome to redistribute it under certain conditions. 268s Type 'license()' or 'licence()' for distribution details. 268s 268s R is a collaborative project with many contributors. 268s Type 'contributors()' for more information and 268s 'citation()' on how to cite R or R packages in publications. 268s 268s Type 'demo()' for some demos, 'help()' for on-line help, or 268s 'help.start()' for an HTML browser interface to help. 268s Type 'q()' to quit R. 268s 268s > suppressPackageStartupMessages(library(sf)) 269s > 269s > nc = st_read(system.file("shape/nc.shp", package="sf"), "nc", crs = 4267, 269s + agr = c(AREA = "aggregate", PERIMETER = "aggregate", CNTY_ = "identity", 269s + CNTY_ID = "identity", NAME = "identity", FIPS = "identity", FIPSNO = "identity", 269s + CRESS_ID = "identity", BIR74 = "aggregate", SID74 = "aggregate", NWBIR74 = "aggregate", 269s + BIR79 = "aggregate", SID79 = "aggregate", NWBIR79 = "aggregate"), quiet = TRUE) 269s > 269s > st_is_valid(nc) 269s [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 269s [16] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 269s [31] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 269s [46] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 269s [61] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 269s [76] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 269s [91] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 269s > 269s > st_is_simple(nc) 269s [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 269s [16] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 269s [31] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 269s [46] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 269s [61] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 269s [76] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 269s [91] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 269s > 269s > nc_tr = st_transform(nc, 3857) 269s > 269s > x = st_buffer(nc_tr, 1000) 269s > 269s > x = st_boundary(nc) 269s > 269s > x = st_convex_hull(nc) 269s > 269s > x = st_simplify(nc_tr, dTolerance = 1e4) 269s > 269s > x = st_simplify(nc_tr, dTolerance = rep(1e4, nrow(nc_tr))) 269s > 269s > x = st_simplify(nc_tr, preserveTopology = TRUE) 269s > 269s > if (sf:::CPL_geos_version() >= "3.4.0") 269s + x = st_triangulate(nc_tr) 269s > 269s > mls = st_multilinestring(list(matrix(c(0,0,0,1,1,1,0,0),,2,byrow=TRUE))) 269s > x = st_polygonize(mls) 269s > 269s > x = st_segmentize(nc_tr, 5e4) 269s > 269s > try(x <- st_segmentize(nc_tr, -0.1)) 269s > 269s > x = st_centroid(nc_tr) 269s Error : argument dfMaxLength should be positive 269s 269s > x = st_point_on_surface(nc_tr) 269s Warning message: 269s st_centroid assumes attributes are constant over geometries 269s Warning message: 269s st_point_on_surface assumes attributes are constant over geometries 269s > 269s > a = nc[1:5,] 269s > b = nc[4:10,] 269s > 269s > x <- st_intersection(a[1,] ,b) 269s > 269s > u = st_union(b) 269s Warning message: 269s attribute variables are assumed to be spatially constant throughout all geometries 269s > 269s > x <- st_intersection(st_geometry(a), st_geometry(u)) 269s > 269s > x = st_union(a[1,], b) 269s > 269s > x = st_union(a, st_union(b)) 269s Warning message: 269s attribute variables are assumed to be spatially constant throughout all geometries 269s Warning message: 269s attribute variables are assumed to be spatially constant throughout all geometries 269s > 269s > x = st_difference(a[1,], b) 269s > 269s > x = st_difference(a, st_union(b)) 269s Warning message: 269s attribute variables are assumed to be spatially constant throughout all geometries 269s Warning message: 269s attribute variables are assumed to be spatially constant throughout all geometries 269s > 269s > x = st_sym_difference(a[1,], b) 269s > 269s > x = st_sym_difference(a, st_union(b)) 269s Warning message: 269s attribute variables are assumed to be spatially constant throughout all geometries 269s > 269s > x = st_drivers() 269s Warning message: 269s attribute variables are assumed to be spatially constant throughout all geometries 269s > #cat(paste("GDAL has", nrow(x), "drivers\n")) 269s > 269s > # GEOS ops: 269s > 269s > st_relate(a, b) 269s although coordinates are longitude/latitude, st_relate assumes that they are 269s planar 269s [,1] [,2] [,3] [,4] [,5] [,6] 269s [1,] "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" 269s [2,] "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" 269s [3,] "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" 269s [4,] "2FFF1FFF2" "FF2FF1212" "FF2FF1212" "FF2F11212" "FF2FF1212" "FF2FF1212" 269s [5,] "FF2FF1212" "2FFF1FFF2" "FF2F11212" "FF2FF1212" "FF2FF1212" "FF2F11212" 269s [,7] 269s [1,] "FF2FF1212" 269s [2,] "FF2FF1212" 269s [3,] "FF2F11212" 269s [4,] "FF2FF1212" 269s [5,] "FF2FF1212" 269s > 269s > st_disjoint(a, b) 269s Sparse geometry binary predicate list of length 5, where the predicate 269s was `disjoint' 269s 1: 1, 2, 3, 4, 5, 6, 7 269s 2: 1, 2, 3, 4, 5, 6, 7 269s 3: 1, 2, 3, 4, 5, 6 269s 4: 2, 3, 5, 6, 7 269s 5: 1, 4, 5, 7 269s > 269s > st_touches(a, b) 269s Sparse geometry binary predicate list of length 5, where the predicate 269s was `touches' 269s 1: (empty) 269s 2: (empty) 269s 3: 7 269s 4: 4 269s 5: 3, 6 269s > 269s > st_crosses(a, b) 269s although coordinates are longitude/latitude, st_crosses assumes that they are 269s planar 269s Sparse geometry binary predicate list of length 5, where the predicate 269s was `crosses' 269s 1: (empty) 269s 2: (empty) 269s 3: (empty) 269s 4: (empty) 269s 5: (empty) 269s > 269s > st_within(a, b) 269s Sparse geometry binary predicate list of length 5, where the predicate 269s was `within' 269s 1: (empty) 269s 2: (empty) 269s 3: (empty) 269s 4: 1 269s 5: 2 269s > 269s > st_contains(a, b) 269s Sparse geometry binary predicate list of length 5, where the predicate 269s was `contains' 269s 1: (empty) 269s 2: (empty) 269s 3: (empty) 269s 4: 1 269s 5: 2 269s > 269s > st_overlaps(a, b) 269s although coordinates are longitude/latitude, st_overlaps assumes that they are 269s planar 269s Sparse geometry binary predicate list of length 5, where the predicate 269s was `overlaps' 269s 1: (empty) 269s 2: (empty) 269s 3: (empty) 269s 4: (empty) 269s 5: (empty) 269s > 269s > st_equals(a, b) 269s Sparse geometry binary predicate list of length 5, where the predicate 269s was `equals' 269s 1: (empty) 269s 2: (empty) 269s 3: (empty) 269s 4: 1 269s 5: 2 269s > 269s > st_covers(a, b) 269s Sparse geometry binary predicate list of length 5, where the predicate 269s was `covers' 269s 1: (empty) 269s 2: (empty) 269s 3: (empty) 269s 4: 1 269s 5: 2 269s > 269s > st_covered_by(a, b) 269s Sparse geometry binary predicate list of length 5, where the predicate 269s was `covered_by' 269s 1: (empty) 269s 2: (empty) 269s 3: (empty) 269s 4: 1 269s 5: 2 269s > 269s > st_equals_exact(a, b, 0.01) 269s Sparse geometry binary predicate list of length 5, where the predicate 269s was `equals_exact' 269s 1: (empty) 269s 2: (empty) 269s 3: (empty) 269s 4: 1 269s 5: 2 269s > 269s > # st_is_within_distance(a, b, 2) 269s > 269s > st_geometry_type(st_sfc(st_point(1:2), st_linestring(matrix(1:4,2,2)))) 269s [1] POINT LINESTRING 269s 18 Levels: GEOMETRY POINT LINESTRING POLYGON MULTIPOINT ... TRIANGLE 269s > 269s > st_geometry_type(st_sfc(st_point(1:2), st_linestring(matrix(1:4,2,2))), by_geometry = FALSE) 269s [1] GEOMETRY 269s 18 Levels: GEOMETRY POINT LINESTRING POLYGON MULTIPOINT ... TRIANGLE 269s > 269s > st_zm(list(st_point(1:3), st_linestring(matrix(1:6,2,3)))) 269s [[1]] 269s 269s [[2]] 269s 269s > 269s > st_zm(list(st_point(1:2), st_linestring(matrix(1:6,3,2))), add = TRUE, "Z") 269s [[1]] 269s 269s [[2]] 269s 269s > 269s > st_transform(st_sfc(st_point(c(0,0)), crs=4326), st_crs("+proj=geocent"))[[1]] 269s > 269s > cbind(st_area(nc_tr[1:5,]), a$AREA) 269s POINT (1 2) 269s LINESTRING (1 3, 2 4) 269s POINT (1 2) 269s LINESTRING (1 4, 2 5, 3 6) 269s POINT Z (6378137 0 0) 269s [,1] [,2] 269s [1,] 1760230516 0.114 269s [2,] 946417787 0.061 269s [3,] 2202223078 0.143 269s [4,] 1074332698 0.070 269s [5,] 2352528086 0.153 269s > 269s > st_area(st_polygon(list(rbind(c(0,0), c(1,0), c(1,1), c(0,1), c(0,0))))) 269s [1] 1 269s > 269s > st_length(st_linestring(rbind(c(0,0),c(0,1)))) 269s [1] 1 269s > 269s > st_length(st_multilinestring(list(rbind(c(0,0),c(0,1))))) 269s [1] 1 269s > 269s > try(st_length(st_polygon(list(rbind(c(0,0), c(1,0), c(1,1), c(0,1), c(0,0)))))) 269s [1] 0 269s > 269s > st_area(st_multilinestring(list(rbind(c(0,0),c(0,1))))) 269s [1] 0 269s > 269s > # adds the (0.5 0.5) node: 269s > st_union(st_multilinestring(list(rbind(c(0,0),c(1,1)), rbind(c(0,1), c(1,0))))) 269s > 269s > p1 = st_point(c(7,52)) 269s > p2 = st_point(c(-30,20)) 269s > sfc = st_sfc(p1, p2) 269s MULTILINESTRING ((0 0, 1 1), (0 1, 1 0)) 269s > try(st_buffer(sfc, units::set_units(1000, km))) # error: no crs 269s > sfc = st_sfc(p1, p2, crs = 4326) 269s > try(zzz <- st_buffer(sfc, units::set_units(1000, km))) # error: wrong units 269s Error in st_buffer.sfc(sfc, units::set_units(1000, km)) : 269s x does not have a crs set: can't convert units 269s > if (version$os == "linux-gnu") { # FIXME: why does this break on windows - degree symbol? 269s + x = st_buffer(sfc, units::set_units(0.1, rad)) # OK: will convert to arc_degrees 269s + } 269s > x = st_transform(sfc, 3857) 269s > x = st_buffer(x, units::set_units(1000, km)) # success 269s > 269s > cr = st_as_sfc("CIRCULARSTRING(0 0,1 0,1 1)") 269s > cr1 = st_sf(a = 1, geometry = cr) 269s > plot(cr) 269s > st_as_grob(cr[[1]]) 269s lines[GRID.lines.1] 269s > 269s > x = st_as_sfc("MULTISURFACE(CURVEPOLYGON(COMPOUNDCURVE(LINESTRING(-159.399779123 22.226016471, -159.399699153 22.226276431, -159.398736217 22.226118372, -159.398260872 22.226095318, -159.398140792 22.2260564590001, -159.398163058 22.2257268010001, -159.397882642 22.225394244, -159.397397157 22.225057335, -159.397318825 22.2251780230001, -159.396993115 22.225177984, -159.396748242 22.2248808800001, -159.396901679 22.224770398, -159.396876329 22.224673093, -159.399167008 22.224731392, -159.399502204 22.225551382), CIRCULARSTRING(-159.399502204 22.225551382, -159.399622762077 22.2257930044972, -159.399779123 22.226016471))))") 269s > mp <- x[[1]] %>% st_cast("MULTIPOLYGON") 269s > 269s > x = st_as_sfc("COMPOUNDCURVE(CIRCULARSTRING(0 0, 1 1, 1 0),(1 0, 0 1))") 269s > ls <- x[[1]] %>% st_cast() 269s > class(ls) 269s [1] "XY" "LINESTRING" "sfg" 269s > 269s > is.na(st_bbox(ls)) 269s [1] FALSE 269s > 269s > mp = st_combine(st_buffer(st_sfc(lapply(1:3, function(x) st_point(c(x,x)))), 0.2 * 1:3)) 269s > plot(st_centroid(mp), add = TRUE, col = 'red') # centroid of combined geometry 269s > plot(st_centroid(mp, of_largest_polygon = TRUE), add = TRUE, col = 'blue', pch = 3) # center of largest sub-polygon 269s > 269s > x = st_sfc(st_polygon(list(rbind(c(0,0),c(0.5,0),c(0.5,0.5),c(0.5,0),c(1,0),c(1,1),c(0,1),c(0,0))))) 269s > suppressWarnings(st_is_valid(x)) 269s [1] FALSE 269s > y = st_make_valid(x) 269s > y = st_make_valid(x[[1]]) 269s > y = st_make_valid(st_sf(a = 1, geom = x)) 269s > st_is_valid(y) 269s [1] TRUE 269s > 269s END TEST gdal_geom.R with result 0 269s BEGIN TEST geos.R 270s 270s R version 4.4.3 (2025-02-28) -- "Trophy Case" 270s Copyright (C) 2025 The R Foundation for Statistical Computing 270s Platform: x86_64-pc-linux-gnu 270s 270s R is free software and comes with ABSOLUTELY NO WARRANTY. 270s You are welcome to redistribute it under certain conditions. 270s Type 'license()' or 'licence()' for distribution details. 270s 270s R is a collaborative project with many contributors. 270s Type 'contributors()' for more information and 270s 'citation()' on how to cite R or R packages in publications. 270s 270s Type 'demo()' for some demos, 'help()' for on-line help, or 270s 'help.start()' for an HTML browser interface to help. 270s Type 'q()' to quit R. 270s 270s > suppressPackageStartupMessages(library(sf)) 270s > # nc = st_read(system.file("gpkg/nc.gpkg", package="sf")) 270s > nc = st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE) 270s > nc_checked = st_transform(nc, 32119, check = TRUE) 270s > ncm = st_transform(nc, 32119) 270s > 270s > x = st_transform(nc[1:10,], 32119) 270s > st_distance(x) 270s Units: [m] 270s [,1] [,2] [,3] [,4] [,5] [,6] [,7] 270s [1,] 0.00 0.00 25651.99 440561.48 299772.34 361529.73 419671.66 270s [2,] 0.00 0.00 0.00 409429.44 268945.05 332590.52 388545.58 270s [3,] 25651.99 0.00 0.00 367556.52 227018.38 290298.04 346669.14 270s [4,] 440561.48 409429.44 367556.52 0.00 67226.86 45537.62 0.00 270s [5,] 299772.34 268945.05 227018.38 67226.86 0.00 0.00 46527.56 270s [6,] 361529.73 332590.52 290298.04 45537.62 0.00 0.00 30213.17 270s [7,] 419671.66 388545.58 346669.14 0.00 46527.56 30213.17 0.00 270s [8,] 384593.29 354295.06 312351.76 16130.19 11926.86 0.00 0.00 270s [9,] 262353.97 231217.73 189310.73 140455.97 0.00 64606.27 119564.00 270s [10,] 71138.53 41943.71 0.00 330752.58 190183.42 252373.26 309863.33 270s [,8] [,9] [,10] 270s [1,] 384593.29 262353.97 71138.53 270s [2,] 354295.06 231217.73 41943.71 270s [3,] 312351.76 189310.73 0.00 270s [4,] 16130.19 140455.97 330752.58 270s [5,] 11926.86 0.00 190183.42 270s [6,] 0.00 64606.27 252373.26 270s [7,] 0.00 119564.00 309863.33 270s [8,] 0.00 85533.33 275391.07 270s [9,] 85533.33 0.00 152489.45 270s [10,] 275391.07 152489.45 0.00 270s > 270s > st_is_valid(nc) 270s [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 270s [16] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 270s [31] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 270s [46] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 270s [61] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 270s [76] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 270s [91] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 270s > 270s > st_is_empty(st_sfc(st_point(), st_linestring())) 270s [1] TRUE TRUE 270s > 270s > ops = c("intersects", #"disjoint", 270s + "touches", "crosses", "within", "contains", "overlaps", "equals", "covers", "covered_by", "equals_exact") 270s > for (op in ops) { 270s + x = sf:::st_geos_binop(op, ncm[1:50,], ncm[51:100,], 0, NA_character_, FALSE) 270s + x = sf:::st_geos_binop(op, ncm[1:50,], ncm[51:100,], 0, NA_character_, TRUE) 270s + } 270s > 270s > ops = c("intersects", #"disjoint", 270s + "touches", "crosses", "within", "contains", "overlaps", "covers", "covered_by") 270s > df = data.frame(ops = ops) 270s > df$equal = NA 270s > for (op in ops) 270s + df[df$ops == op, "equal"] = identical( 270s + sf:::st_geos_binop(op, ncm[1:50,], ncm[51:100,], 0, NA_character_, TRUE, FALSE), 270s + sf:::st_geos_binop(op, ncm[1:50,], ncm[51:100,], 0, NA_character_, TRUE, TRUE) 270s + ) 270s > df 270s ops equal 270s 1 intersects TRUE 270s 2 touches TRUE 270s 3 crosses TRUE 270s 4 within TRUE 270s 5 contains TRUE 270s 6 overlaps TRUE 270s 7 covers TRUE 270s 8 covered_by TRUE 270s > 270s > st_contains_properly(ncm[1:3,], ncm[1:3]) 270s Sparse geometry binary predicate list of length 3, where the predicate 270s was `contains_properly' 270s 1: (empty) 270s 2: (empty) 270s 3: (empty) 270s > 270s > st_combine(nc) 270s Geometry set for 1 feature 270s Geometry type: MULTIPOLYGON 270s Dimension: XY 270s Bounding box: xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965 270s Geodetic CRS: NAD27 271s MULTIPOLYGON (((-81.47276 36.23436, -81.54084 3... 271s > 271s > st_dimension(st_sfc(st_point(0:1), st_linestring(rbind(c(0,0),c(1,1))), 271s + st_polygon(list(rbind(c(0,0), c(1,0), c(1,1), c(0,1), c(0,0)))))) 271s [1] 0 1 2 271s > 271s > ncbb = st_as_sfc(st_bbox(nc)) 271s > g = st_make_grid(ncbb) 271s > x = st_intersection(nc, g) 272s > x = st_intersection(g, nc) 272s Warning message: 272s attribute variables are assumed to be spatially constant throughout all geometries 272s > 272s > ls = st_sfc(st_linestring(rbind(c(0,0),c(0,1))), 272s + st_linestring(rbind(c(0,0),c(10,0)))) 272s > 272s > suppressWarnings(RNGversion("3.5.3")) 272s > set.seed(13531) 272s > 272s > st_line_sample(ls, density = 1, type = "random") 272s Geometry set for 2 features 272s Geometry type: MULTIPOINT 273s Dimension: XY 273s Bounding box: xmin: 0 ymin: 0 xmax: 6.880179 ymax: 0.8878369 273s CRS: NA 273s > 273s > g = st_make_grid(ncbb, n = c(20,10)) 273s > 273s > a1 = st_interpolate_aw(nc["BIR74"], g, FALSE) 273s MULTIPOINT ((0 0.8878369)) 273s MULTIPOINT ((0.2986488 0), (2.48417 0), (2.5678... 277s > sum(a1$BIR74) / sum(nc$BIR74) # not close to one: property is assumed spatially intensive 277s [1] 1.436123 277s > a2 = st_interpolate_aw(nc["BIR74"], g, extensive = TRUE) 277s Warning message: 277s In st_interpolate_aw.sf(nc["BIR74"], g, FALSE) : 277s st_interpolate_aw assumes attributes are constant or uniform over areas of x 283s > sum(a2$BIR74) / sum(nc$BIR74) 283s [1] 1 283s > 283s > # missing x: 283s > g = st_make_grid(offset = c(0,0), cellsize = c(1,1), n = c(10,10)) 283s Warning message: 283s In st_interpolate_aw.sf(nc["BIR74"], g, extensive = TRUE) : 283s st_interpolate_aw assumes attributes are constant or uniform over areas of x 283s > g = st_make_grid(what = "centers") 283s > length(g) 283s [1] 648 283s > g = st_make_grid(what = "corners") 283s > length(g) 283s [1] 703 283s > 283s > g1 = st_make_grid(ncbb, 0.1, what = "polygons", square = FALSE) 283s > g2 = st_make_grid(ncbb, 0.1, what = "points", square = FALSE) 283s > 283s > # st_line_merge: 283s > mls = st_multilinestring(list(rbind(c(0,0), c(1,1)), rbind(c(2,0), c(1,1)))) 283s > st_line_merge(mls) 283s > LINESTRING (0 0, 1 1, 2 0) 283s 283s > if (isTRUE(try(compareVersion(sf_extSoftVersion()["GEOS"], "3.5.0") > -1, silent = TRUE))) { 283s + # voronoi: 283s + set.seed(1) 283s + m = matrix(runif(10),,2) 283s + x = st_multipoint(m) 283s + box = st_polygon(list(rbind(c(0,0),c(1,0),c(1,1),c(0,1),c(0,0)))) 283s + v = st_sfc(st_voronoi(x, st_sfc(box))) 283s + plot(v, col = 0, border = 1, axes = TRUE) 283s + plot(box, add = TRUE, col = 0, border = 1) # a larger box is returned, as documented 283s + plot(x, add = TRUE, col = 'red', cex=2, pch=16) 283s + plot(st_intersection(st_cast(v), box)) # clip to smaller box 283s + plot(x, add = TRUE, col = 'red', cex=2, pch=16) 283s + v0 = st_sfc(st_voronoi(st_sfc(x), st_sfc(box))) 283s + pal <- c("black", "red", "green", "blue", "orange") 283s + opar = par(mfrow=c(1,2)) 283s + plot(st_collection_extract(v0, "POLYGON"), col=pal) 283s + text(m[,1], m[,2], label=1:5, col="white") 283s + if (isTRUE(try(compareVersion(sf_extSoftVersion()["GEOS"], "3.12.0") > -1, silent = TRUE))) { 283s + v2 = st_sfc(st_voronoi(st_sfc(x), st_sfc(box), point_order=TRUE)) 283s + plot(st_collection_extract(v2, "POLYGON"), col=pal) 283s + text(m[,1], m[,2], label=1:5, col="white") 283s + } 283s + par(opar) 283s + 283s + v = st_voronoi(x) 283s + print(class(v)) 283s + v = st_sfc(st_voronoi(st_sfc(x))) 283s + print(class(v)) 283s + v = st_voronoi(st_sf(a = 1, geom = st_sfc(x))) 283s + print(class(v)) 283s + } 283s [1] "XY" "GEOMETRYCOLLECTION" "sfg" 283s [1] "sfc_GEOMETRYCOLLECTION" "sfc" 283s [1] "sf" "data.frame" 283s > 283s > i = st_intersects(ncm, ncm[1:88,]) 283s > all.equal(i, t(t(i))) 283s [1] TRUE 283s > 283s > # check use of pattern in st_relate: 283s > sfc = st_as_sfc(st_bbox(st_sfc(st_point(c(0,0)), st_point(c(3,3))))) 283s > grd = st_make_grid(sfc, n = c(3,3)) 283s > st_intersects(grd) 283s Sparse geometry binary predicate list of length 9, where the predicate 283s was `intersects' 283s 1: 1, 2, 4, 5 283s 2: 1, 2, 3, 4, 5, 6 283s 3: 2, 3, 5, 6 283s 4: 1, 2, 4, 5, 7, 8 283s 5: 1, 2, 3, 4, 5, 6, 7, 8, 9 283s 6: 2, 3, 5, 6, 8, 9 283s 7: 4, 5, 7, 8 283s 8: 4, 5, 6, 7, 8, 9 283s 9: 5, 6, 8, 9 283s > st_relate(grd, pattern = "****1****") 283s Sparse geometry binary predicate list of length 9, where the predicate 283s was `relate_pattern' 283s 1: 1, 2, 4 283s 2: 1, 2, 3, 5 283s 3: 2, 3, 6 283s 4: 1, 4, 5, 7 283s 5: 2, 4, 5, 6, 8 283s 6: 3, 5, 6, 9 283s 7: 4, 7, 8 283s 8: 5, 7, 8, 9 283s 9: 6, 8, 9 283s > st_relate(grd, pattern = "****0****") 283s Sparse geometry binary predicate list of length 9, where the predicate 283s was `relate_pattern' 283s 1: 5 283s 2: 4, 6 283s 3: 5 283s 4: 2, 8 283s 5: 1, 3, 7, 9 283s 6: 2, 8 283s 7: 5 283s 8: 4, 6 283s 9: 5 283s > st_rook = function(a, b = a, ...) st_relate(a, b, pattern = "F***1****", ...) 283s > st_rook(grd, sparse = FALSE) 283s [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] 283s [1,] FALSE TRUE FALSE TRUE FALSE FALSE FALSE FALSE FALSE 283s [2,] TRUE FALSE TRUE FALSE TRUE FALSE FALSE FALSE FALSE 283s [3,] FALSE TRUE FALSE FALSE FALSE TRUE FALSE FALSE FALSE 283s [4,] TRUE FALSE FALSE FALSE TRUE FALSE TRUE FALSE FALSE 283s [5,] FALSE TRUE FALSE TRUE FALSE TRUE FALSE TRUE FALSE 283s [6,] FALSE FALSE TRUE FALSE TRUE FALSE FALSE FALSE TRUE 283s [7,] FALSE FALSE FALSE TRUE FALSE FALSE FALSE TRUE FALSE 283s [8,] FALSE FALSE FALSE FALSE TRUE FALSE TRUE FALSE TRUE 283s [9,] FALSE FALSE FALSE FALSE FALSE TRUE FALSE TRUE FALSE 283s > 283s > #if (Sys.getenv("USER") %in% c("edzer", "travis")) { # memory leaks: 283s > try(st_relate(st_point(), st_point(), pattern = "FF*FF****")) # error: use st_disjoint 283s > #} 283s > 283s > a = st_is_within_distance(nc[c(1:3,20),], nc[1:3,], 100000, sparse = FALSE) 283s > b = st_is_within_distance(nc[c(1:3,20),], nc[1:3,], units::set_units(100000, m), sparse = FALSE) 283s > all.equal(a, b) 283s [1] TRUE 283s > x = st_is_within_distance(nc[1:3,], nc[1:5,], 100000) 283s > y = st_is_within_distance(nc[1:3,], nc[1:5,], units::set_units(100, km)) 283s Error : use st_disjoint for this pattern 283s > all.equal(x, y) 283s [1] TRUE 283s > 283s > nc_3857 = st_transform(nc, 3857) 283s > a = st_is_within_distance(nc_3857[c(1:3,20),], nc_3857[1:3,], 100000, sparse = FALSE) 283s > b = st_is_within_distance(nc_3857[c(1:3,20),], nc_3857[1:3,], units::set_units(100000, m), sparse = FALSE) 283s > all.equal(a, b) 283s [1] TRUE 283s > x = st_is_within_distance(nc_3857, nc_3857, 100000) 284s > y = st_is_within_distance(nc_3857, nc_3857, units::set_units(100, km)) 284s > all.equal(x, y) 284s [1] TRUE 284s > 284s > pe = st_sfc(st_point()) 284s > p = st_sfc(st_point(c(0,0)), st_point(c(0,1)), st_point(c(0,2))) 284s > st_distance(p, p) 284s [,1] [,2] [,3] 284s [1,] 0 1 2 284s [2,] 1 0 1 284s [3,] 2 1 0 284s > st_distance(p, pe) 284s [,1] 284s [1,] NA 284s [2,] NA 284s [3,] NA 284s > st_distance(p, p, by_element = TRUE) 284s [1] 0 0 0 284s > st_crs(p) = 4326 284s > st_distance(p, p[c(2,3,1)], by_element = TRUE) 284s Units: [m] 284s [1] 111195.1 111195.1 222390.2 284s > p = st_transform(p, 3587) 284s > st_distance(p, p[c(2,3,1)], by_element = TRUE) 284s Units: [m] 284s [1] 144589.5 142873.3 287462.8 284s > 284s > # from https://github.com/r-spatial/sf/issues/458 : 284s > pts <- st_sfc(st_point(c(.5,.5)), st_point(c(1.5, 1.5)), st_point(c(2.5, 2.5))) 284s > pol <- st_polygon(list(rbind(c(0,0), c(2,0), c(2,2), c(0,2), c(0,0)))) 284s > pol_df <- data.frame(id = 1) 284s > st_geometry(pol_df) <- st_sfc(pol) 284s > st_intersects(pts, pol_df[pol_df$id == 2,]) # with empty sf/sfc 284s Sparse geometry binary predicate list of length 3, where the predicate 284s was `intersects' 284s 1: (empty) 284s 2: (empty) 284s 3: (empty) 284s > st_intersects(pts, pol_df[pol_df$id == 2,], sparse = FALSE) # with empty sf/sfc 284s 284s [1,] 284s [2,] 284s [3,] 284s > 284s > # st_node 284s > l = st_linestring(rbind(c(0,0), c(1,1), c(0,1), c(1,0), c(0,0))) 284s > st_node(l) 284s MULTILINESTRING ((0 0, 0.5 0.5), (0.5 0.5, 1 1, 0 1, 0.5 0.5), (0.5 0.5, 1 0, 0 0)) 284s > st_node(st_sfc(l)) 284s Geometry set for 1 feature 284s Geometry type: MULTILINESTRING 284s Dimension: XY 284s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 284s CRS: NA 284s MULTILINESTRING ((0 0, 0.5 0.5), (0.5 0.5, 1 1,... 284s > st_node(st_sf(a = 1, st_sfc(l))) 284s Simple feature collection with 1 feature and 1 field 284s Geometry type: MULTILINESTRING 284s Dimension: XY 284s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 284s CRS: NA 284s a st_sfc.l. 284s 1 1 MULTILINESTRING ((0 0, 0.5 ... 284s > 284s > # print.sgbp: 284s > (lst = st_disjoint(nc, nc)) 284s Sparse geometry binary predicate list of length 100, where the 284s predicate was `disjoint' 284s first 10 elements: 284s 1: 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, ... 284s 2: 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, ... 284s 3: 1, 4, 5, 6, 7, 8, 9, 11, 12, 13, ... 284s 4: 1, 2, 3, 5, 6, 8, 9, 10, 11, 12, ... 284s 5: 1, 2, 3, 4, 7, 8, 10, 11, 12, 13, ... 284s 6: 1, 2, 3, 4, 7, 9, 10, 11, 12, 13, ... 284s 7: 1, 2, 3, 5, 6, 9, 10, 11, 12, 13, ... 284s 8: 1, 2, 3, 4, 5, 9, 10, 11, 12, 13, ... 284s 9: 1, 2, 3, 4, 6, 7, 8, 10, 11, 12, ... 284s 10: 1, 2, 4, 5, 6, 7, 8, 9, 11, 13, ... 284s > # dim.sgbp: 284s > dim(lst) 284s [1] 100 100 284s > # as.matrix.sgbp: 284s > as.matrix(lst)[1:5, 1:5] 284s [,1] [,2] [,3] [,4] [,5] 284s [1,] FALSE FALSE TRUE TRUE TRUE 284s [2,] FALSE FALSE FALSE TRUE TRUE 284s [3,] TRUE FALSE FALSE TRUE TRUE 284s [4,] TRUE TRUE TRUE FALSE TRUE 284s [5,] TRUE TRUE TRUE TRUE FALSE 284s > # negate: 284s > !lst 284s Sparse geometry binary predicate list of length 100, where the 284s predicate was `!disjoint' 284s first 10 elements: 284s 1: 1, 2, 18, 19 284s 2: 1, 2, 3, 18 284s 3: 2, 3, 10, 18, 23, 25 284s 4: 4, 7, 56 284s 5: 5, 6, 9, 16, 28 284s 6: 5, 6, 8, 28 284s 7: 4, 7, 8, 17 284s 8: 6, 7, 8, 17, 20, 21 284s 9: 5, 9, 15, 16, 24, 31 284s 10: 3, 10, 12, 25, 26 284s > # as.data.frame: 284s > head(as.data.frame(lst), 10) 284s row.id col.id 284s 1 1 3 284s 2 1 4 284s 3 1 5 284s 4 1 6 284s 5 1 7 284s 6 1 8 284s 7 1 9 284s 8 1 10 284s 9 1 11 284s 10 1 12 284s > 284s > # snap: 284s > nc1 = st_transform(nc, 32119) 284s > g = st_make_grid(nc1, c(5000,5000), what = "centers") 284s > s = st_snap(nc1[1:3,], g, 2501*sqrt(2)) 284s > sfg = st_snap(st_geometry(nc1)[[1]], g, 2501*sqrt(2)) 284s > sfg = st_snap(st_geometry(nc1)[[1]], st_combine(g), 2501*sqrt(2)) 284s > 284s > # Hausdorff distance: http://geos.refractions.net/ro/doxygen_docs/html/classgeos_1_1algorithm_1_1distance_1_1DiscreteHausdorffDistance.html 284s > A = st_as_sfc("LINESTRING (0 0, 100 0, 10 100, 10 100)") 284s > B = st_as_sfc("LINESTRING (0 100, 0 10, 80 10)") 284s > st_distance(c(A,B)) 284s [,1] [,2] 284s [1,] 0.000000 8.176236 284s [2,] 8.176236 0.000000 284s > st_distance(c(A,B), which = "Hausdorff") 284s [,1] [,2] 284s [1,] 0.00000 22.36068 284s [2,] 22.36068 0.00000 284s > st_distance(c(A,B), which = "Hausdorff", par = 0.001) 284s [,1] [,2] 284s [1,] 2.929643e-14 4.789000e+01 284s [2,] 4.789000e+01 2.131628e-14 284s > LE = st_as_sfc("LINESTRING EMPTY") 284s > st_distance(c(A, LE), which = "Hausdorff", par = 0.001) 284s [,1] [,2] 284s [1,] 2.929643e-14 NA 284s [2,] NA NA 284s > 284s > # one-argument st_intersection and st_difference: 284s > set.seed(131) 284s > m = rbind(c(0,0), c(1,0), c(1,1), c(0,1), c(0,0)) 284s > p = st_polygon(list(m)) 284s > n = 100 284s > l = vector("list", n) 284s > for (i in 1:n) 284s + l[[i]] = p + 10 * runif(2) 284s > s = st_sfc(l) 284s > plot(s, col = sf.colors(categorical = TRUE, alpha = .5)) 284s > d = st_difference(s) # sequential differences: s1, s2-s1, s3-s2-s1, ... 284s > plot(d, col = sf.colors(categorical = TRUE, alpha = .5)) 284s > i = st_intersection(s) # all intersections 284s > plot(i, col = sf.colors(categorical = TRUE, alpha = .5)) 284s > summary(lengths(st_overlaps(s, s))) 284s Min. 1st Qu. Median Mean 3rd Qu. Max. 284s 0.00 2.00 3.50 3.66 5.00 8.00 284s > summary(lengths(st_overlaps(d, d))) 284s Min. 1st Qu. Median Mean 3rd Qu. Max. 284s 0 0 0 0 0 0 284s > summary(lengths(st_overlaps(i, i))) 284s Min. 1st Qu. Median Mean 3rd Qu. Max. 284s 0 0 0 0 0 0 284s > 284s > sf = st_sf(s) 284s > i = st_intersection(sf) # all intersections 284s > plot(i["n.overlaps"]) 285s > summary(i$n.overlaps - lengths(i$origins)) 285s Min. 1st Qu. Median Mean 3rd Qu. Max. 285s 0 0 0 0 0 0 285s > 285s > # st_nearest_points: 285s > pt1 = st_point(c(.1,.1)) 285s > pt2 = st_point(c(.9,.9)) 285s > b1 = st_buffer(pt1, 0.1) 285s > b2 = st_buffer(pt2, 0.1) 285s > plot(b1, xlim = c(0,1), ylim = c(0,1)) 285s > plot(b2, add = TRUE) 285s > (ls0 = try(st_nearest_points(b1, b2))) # sfg 285s Geometry set for 1 feature 285s Geometry type: LINESTRING 285s Dimension: XY 285s Bounding box: xmin: 0.1707107 ymin: 0.1707107 xmax: 0.8292893 ymax: 0.8292893 285s CRS: NA 285s LINESTRING (0.1707107 0.1707107, 0.8292893 0.82... 285s > (ls = try(st_nearest_points(st_sfc(b1), st_sfc(b2)))) # sfc 285s Geometry set for 1 feature 285s Geometry type: LINESTRING 285s Dimension: XY 285s Bounding box: xmin: 0.1707107 ymin: 0.1707107 xmax: 0.8292893 ymax: 0.8292893 285s CRS: NA 285s LINESTRING (0.1707107 0.1707107, 0.8292893 0.82... 285s > (ls = try(st_nearest_points(st_sfc(b1), st_sfc(b2), pairwise = TRUE))) # sfc 285s LINESTRING (0.1707107 0.1707107, 0.8292893 0.82... 285s Geometry set for 1 feature 285s Geometry type: LINESTRING 285s Dimension: XY 285s Bounding box: xmin: 0.1707107 ymin: 0.1707107 xmax: 0.8292893 ymax: 0.8292893 285s CRS: NA 285s > identical(ls0, ls) 285s [1] TRUE 285s > # plot(ls, add = TRUE, col = 'red') 285s > 285s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf")) 285s > plot(st_geometry(nc)) 285s > ls = try(st_nearest_points(nc[1,], nc)) 285s > # plot(ls, col = 'red', add = TRUE) 285s > pts = st_cast(ls, "POINT") # gives all start & end points 285s > # starting, "from" points, corresponding to x: 285s > plot(pts[seq(1, 200, 2)], add = TRUE, col = 'blue') 285s There were 50 or more warnings (use warnings() to see the first 50) 285s > # ending, "to" points, corresponding to y: 285s > plot(pts[seq(2, 200, 2)], add = TRUE, col = 'red') 285s > 285s > # points to nearest features 285s > ls1 = st_linestring(rbind(c(0,0), c(1,0))) 285s > ls2 = st_linestring(rbind(c(0,0.1), c(1,0.1))) 285s > ls3 = st_linestring(rbind(c(0,1), c(1,1))) 285s > (l = st_sfc(ls1, ls2, ls3)) 285s Geometry set for 3 features 285s Geometry type: LINESTRING 285s Dimension: XY 285s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 285s CRS: NA 285s LINESTRING (0 0, 1 0) 285s LINESTRING (0 0.1, 1 0.1) 285s LINESTRING (0 1, 1 1) 285s POINT (0.1 -0.1) 285s POINT (0.1 0.11) 285s > 285s > p1 = st_point(c(0.1, -0.1)) 285s > p2 = st_point(c(0.1, 0.11)) 285s > p3 = st_point(c(0.1, 0.09)) 285s > p4 = st_point(c(0.1, 0.9)) 285s > p5 = st_point() 285s > 285s > (p = st_sfc(p1, p2, p3, p4, p5)) 285s Geometry set for 5 features (with 1 geometry empty) 285s Geometry type: POINT 285s Dimension: XY 285s Bounding box: xmin: 0.1 ymin: -0.1 xmax: 0.1 ymax: 0.9 285s CRS: NA 285s POINT (0.1 0.09) 285s POINT (0.1 0.9) 285s POINT EMPTY 285s > #st_nearest_points(p, l) 285s > n = try(st_nearest_feature(p,l)) 285s > if (!inherits(n, "try-error")) { 285s + print(st_nearest_points(p, l[n], pairwise = TRUE)) 285s + print(st_nearest_feature(p, l)) 285s + print(st_nearest_feature(p, st_sfc())) 285s + print(st_nearest_feature(st_sfc(), l)) 285s + } 285s Geometry set for 5 features (with 1 geometry empty) 285s Geometry type: LINESTRING 285s Dimension: XY 285s Bounding box: xmin: 0.1 ymin: -0.1 xmax: 0.1 ymax: 1 285s LINESTRING (0.1 -0.1, 0.1 0) 285s CRS: NA 285s LINESTRING (0.1 0.11, 0.1 0.1) 285s LINESTRING (0.1 0.09, 0.1 0.1) 285s LINESTRING (0.1 0.9, 0.1 1) 285s LINESTRING EMPTY 285s [1] 1 2 2 3 NA 285s POINT EMPTY 285s [1] NA NA NA NA NA 285s integer(0) 285s > 285s > # can do centroid of empty geom: 285s > st_centroid(st_polygon()) 285s > 285s > #999: 285s > pt = data.frame(x=1:2, y=1:2,a=letters[1:2]) 285s > pt = st_as_sf(pt, coords=c("x","y")) 285s > 285s > bf =st_buffer(pt, dist=0.3) 285s > 285s > st_within(pt,bf, sparse=FALSE) 285s [,1] [,2] 285s [1,] TRUE FALSE 285s [2,] FALSE TRUE 285s > st_within(pt[1,], bf[1,], sparse = FALSE) 285s [,1] 285s [1,] TRUE 285s > st_relate(pt[1,], bf[1,], pattern = "T*F**F***", sparse = FALSE) 285s [,1] 285s [1,] TRUE 285s > 285s > sf:::is_symmetric(pattern = "010121010") 285s [1] TRUE 285s > sf:::is_symmetric(pattern = "010121021") 285s [1] FALSE 285s > 285s > st_intersects(st_point(0:1), st_point(2:3)) # sfg method 285s Sparse geometry binary predicate list of length 1, where the predicate 285s was `intersects' 285s 1: (empty) 285s > 285s > if (isTRUE(try(compareVersion(sf_extSoftVersion()["GEOS"], "3.7.0") > -1, silent = TRUE))) { 285s + ls = st_linestring(rbind(c(1,1), c(2,2), c(3,3))) 285s + print(st_reverse(ls)) 285s + print(st_reverse(st_sfc(ls))) 285s + print(st_reverse(st_sf(a = 2, geom = st_sfc(ls)))) 285s + } 285s LINESTRING (3 3, 2 2, 1 1) 285s Geometry set for 1 feature 285s Geometry type: LINESTRING 285s Dimension: XY 285s Bounding box: LINESTRING (3 3, 2 2, 1 1) 285s xmin: 1 ymin: 1 xmax: 3 ymax: 3 285s CRS: NA 285s Simple feature collection with 1 feature and 1 field 285s Geometry type: LINESTRING 285s Dimension: XY 285s Bounding box: xmin: 1 ymin: 1 xmax: 3 ymax: 3 285s CRS: NA 285s a geom 285s 1 2 LINESTRING (3 3, 2 2, 1 1) 285s > 285s > p = st_polygon(list(rbind(c(0,0), c(1,0), c(1,1), c(0,1), c(0,0)))) 285s > y = st_sfc(p) 285s > x = st_sfc(p + 1.001) 285s > 285s > x %>% st_set_precision(0) %>% st_intersects(y) 285s Sparse geometry binary predicate list of length 1, where the predicate 285s was `intersects' 285s 1: (empty) 285s > x %>% st_set_precision(10000) %>% st_intersects(y) 285s Sparse geometry binary predicate list of length 1, where the predicate 285s was `intersects' 285s 1: (empty) 285s > x %>% st_set_precision(1000) %>% st_intersects(y) 285s Sparse geometry binary predicate list of length 1, where the predicate 285s was `intersects' 285s 1: (empty) 285s > x %>% st_set_precision(501) %>% st_intersects(y) # no 285s Sparse geometry binary predicate list of length 1, where the predicate 285s was `intersects' 285s 1: (empty) 285s > x %>% st_set_precision(500) %>% st_intersects(y) # yes 285s Sparse geometry binary predicate list of length 1, where the predicate 285s was `intersects' 285s 1: 1 285s > x %>% st_set_precision(100) %>% st_intersects(y) 285s Sparse geometry binary predicate list of length 1, where the predicate 285s was `intersects' 285s 1: 1 285s > x %>% st_set_precision(10) %>% st_intersects(y) 285s Sparse geometry binary predicate list of length 1, where the predicate 285s was `intersects' 285s 1: 1 285s > 285s > p1 = st_point(0:1) 285s > p2 = st_point(2:1) 285s > p = st_sf(a = letters[1:8], geom = st_sfc(p1, p1, p2, p1, p1, p2, p2, p1)) 285s > st_equals(p) 285s Sparse geometry binary predicate list of length 8, where the predicate 285s was `equals' 285s 1: 1, 2, 4, 5, 8 285s 2: 1, 2, 4, 5, 8 285s 3: 3, 6, 7 285s 4: 1, 2, 4, 5, 8 285s 5: 1, 2, 4, 5, 8 285s 6: 3, 6, 7 285s 7: 3, 6, 7 285s 8: 1, 2, 4, 5, 8 285s > st_equals(p, remove_self = TRUE) 285s Sparse geometry binary predicate list of length 8, where the predicate 285s was `equals', with remove_self = TRUE 285s 1: 2, 4, 5, 8 285s 2: 1, 4, 5, 8 285s 3: 6, 7 285s 4: 1, 2, 5, 8 285s 5: 1, 2, 4, 8 285s 6: 3, 7 285s 7: 3, 6 285s 8: 1, 2, 4, 5 285s > (u = st_equals(p, retain_unique = TRUE)) 285s Sparse geometry binary predicate list of length 8, where the predicate 285s was `equals', with retain_unique = TRUE 285s 1: 2, 4, 5, 8 285s 2: 4, 5, 8 285s 3: 6, 7 285s 4: 5, 8 285s 5: 8 285s 6: 7 285s 7: (empty) 285s 8: (empty) 285s > # retain the records with unique geometries: 285s > p[-unlist(u),] 285s Simple feature collection with 2 features and 1 field 285s Geometry type: POINT 285s Dimension: XY 285s Bounding box: xmin: 0 ymin: 1 xmax: 2 ymax: 1 285s CRS: NA 285s a geom 285s 1 a POINT (0 1) 285s 3 c POINT (2 1) 285s > 285s END TEST geos.R with result 0 285s BEGIN TEST graticule.R 285s 285s R version 4.4.3 (2025-02-28) -- "Trophy Case" 285s Copyright (C) 2025 The R Foundation for Statistical Computing 285s Platform: x86_64-pc-linux-gnu 285s 285s R is free software and comes with ABSOLUTELY NO WARRANTY. 285s You are welcome to redistribute it under certain conditions. 285s Type 'license()' or 'licence()' for distribution details. 285s 285s R is a collaborative project with many contributors. 285s Type 'contributors()' for more information and 285s 'citation()' on how to cite R or R packages in publications. 285s 285s Type 'demo()' for some demos, 'help()' for on-line help, or 285s 'help.start()' for an HTML browser interface to help. 285s Type 'q()' to quit R. 285s 285s > if (require(maps, quietly = TRUE)) { 285s + m = map('usa', plot = FALSE, fill = TRUE) 285s + suppressPackageStartupMessages(library(sf)) 285s + m0 <- st_as_sfc(m) 285s + m <- st_as_sf(m) 285s + 285s + laea = st_crs("+proj=laea +lat_0=30 +lon_0=-95") # Lambert equal area 285s + m <- st_transform(st_as_sf(m), laea) 285s + 285s + bb = st_bbox(m) 285s + bbox = st_linestring(rbind(c( bb[1],bb[2]),c( bb[3],bb[2]),c( bb[3],bb[4]),c( bb[1],bb[4]),c( bb[1],bb[2]))) 285s + 285s + g = st_graticule(m) 285s + plot(m, xlim = 1.2 * c(-2450853.4, 2186391.9)) 285s + plot(g[1], add = TRUE, col = 'grey') 285s + plot(bbox, add = TRUE) 285s + points(g$x_start, g$y_start, col = 'red') 285s + points(g$x_end, g$y_end, col = 'blue') 285s + 285s + invisible(lapply(seq_len(nrow(g)), function(i) { 285s + if (g$type[i] == "N" && g$x_start[i] - min(g$x_start) < 1000) 285s + text(g$x_start[i], g$y_start[i], labels = parse(text = g$degree_label[i]), 285s + srt = g$angle_start[i], pos = 2, cex = .7) 285s + if (g$type[i] == "E" && g$y_start[i] - min(g$y_start) < 1000) 285s + text(g$x_start[i], g$y_start[i], labels = parse(text = g$degree_label[i]), 285s + srt = g$angle_start[i] - 90, pos = 1, cex = .7) 285s + if (g$type[i] == "N" && g$x_end[i] - max(g$x_end) > -1000) 285s + text(g$x_end[i], g$y_end[i], labels = parse(text = g$degree_label[i]), 285s + srt = g$angle_end[i], pos = 4, cex = .7) 285s + if (g$type[i] == "E" && g$y_end[i] - max(g$y_end) > -1000) 285s + text(g$x_end[i], g$y_end[i], labels = parse(text = g$degree_label[i]), 285s + srt = g$angle_end[i] - 90, pos = 3, cex = .7) 285s + })) 285s + 285s + plot(m, graticule = st_crs(4326)) 285s + nc = st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE) 285s + # options(warn=2) 285s + g = st_graticule(nc, datum = st_crs(nc)) 285s + #g = st_graticule(nc) 285s + 285s + plot(nc[1], graticule = st_crs(nc)) 285s + 285s + plot(nc[1], graticule = st_crs(nc), axes = TRUE) 285s + 285s + g = st_graticule() 285s + 285s + if (require(ggplot2, quietly = TRUE) && utils::packageVersion("ggplot2") > "2.2.1") { 285s + ggplot() + geom_sf(data = st_set_crs(nc, NA_crs_)) # NA_crs_ for crs 285s + } 285s + 285s + library(maps) #421 285s + (wrld2 = st_as_sf(map('world2', plot=FALSE, fill=TRUE ))) 285s + try(plot(wrld2, graticule = TRUE)) 285s + } 287s > 287s END TEST graticule.R with result 0 287s BEGIN TEST grid.R 287s 287s R version 4.4.3 (2025-02-28) -- "Trophy Case" 287s Copyright (C) 2025 The R Foundation for Statistical Computing 287s Platform: x86_64-pc-linux-gnu 287s 287s R is free software and comes with ABSOLUTELY NO WARRANTY. 287s You are welcome to redistribute it under certain conditions. 287s Type 'license()' or 'licence()' for distribution details. 287s 287s R is a collaborative project with many contributors. 287s Type 'contributors()' for more information and 287s 'citation()' on how to cite R or R packages in publications. 287s 287s Type 'demo()' for some demos, 'help()' for on-line help, or 287s 'help.start()' for an HTML browser interface to help. 287s Type 'q()' to quit R. 287s 287s > # MULTIPOLYGONS 287s > suppressPackageStartupMessages(library(sf)) 288s > library(grid) 288s > nc = st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE) 288s > grid.newpage() 288s > # pushViewport(viewport(width = 0.8, height = 0.8)) 288s > pushViewport(st_viewport(nc)) 288s > invisible(lapply(st_geometry(nc), function(x) grid.draw(st_as_grob(x, gp = gpar(fill = 'red'))))) 288s > 288s > # POLYGONS 288s > # nc = st_read(system.file("gpkg/nc.gpkg", package="sf"), "nc.gpkg", type = 3) 288s > nc = st_read(system.file("shape/nc.shp", package="sf"), type = 3, quiet = TRUE) 288s > grid.newpage() 288s > pushViewport(st_viewport(nc)) 288s > invisible(lapply(st_geometry(nc), function(x) grid.draw(st_as_grob(x, gp = gpar(fill = 'red'))))) 288s > 288s > # POINTS: 288s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) { 288s + data(meuse, package = "sp") 288s + meuse_sf = st_as_sf(meuse, coords = c("x", "y"), crs = 28992, agr = "constant") 288s + grid.newpage() 288s + pushViewport(st_viewport(meuse_sf)) 288s + invisible(lapply(st_geometry(meuse_sf), 288s + function(x) grid.draw(st_as_grob(x, gp = gpar(fill = 'red'))))) 288s + } 288s > 288s > # MULTIPOINTS 288s > mp = st_multipoint(cbind(runif(100), runif(100))) 288s > grid.newpage() 288s > pushViewport(st_viewport(mp)) 288s > grid.draw(st_as_grob(mp, gp = gpar(fill = 'red'))) 288s > 288s > # LINESTRING 288s > ls = st_linestring(cbind(1:10, rnorm(10))) 288s > grid.newpage() 288s > pushViewport(st_viewport(ls)) 288s > grid.draw(st_as_grob(ls, gp = gpar(fill = 'red'))) 288s > 288s > # MULTILINESTRING 288s > ls = st_multilinestring(list(cbind(1:10, 5+rnorm(10)), cbind(1:10, rnorm(10)), cbind(1:10, -5+rnorm(10)))) 288s > grid.newpage() 288s > pushViewport(st_viewport(ls)) 288s > grid.draw(st_as_grob(ls, gp = gpar(fill = 'red'))) 288s > 288s > if (require(sp, quietly = TRUE)) { 288s + # POINTS, right aspect in Long/Lat: 288s + meuse_ll = st_transform(meuse_sf, 4326) 288s + grid.newpage() 288s + pushViewport(st_viewport(meuse_ll)) 288s + invisible(lapply(st_geometry(meuse_ll), 288s + function(x) grid.draw(st_as_grob(x, gp = gpar(fill = 'red'))))) 288s + 288s + # WRONG aspect: 288s + st_crs(meuse_ll) = NA 288s + grid.newpage() 288s + pushViewport(st_viewport(meuse_ll)) 288s + invisible(lapply(st_geometry(meuse_ll), 288s + function(x) grid.draw(st_as_grob(x, gp = gpar(fill = 'red'))))) 288s + } 288s > 288s > gc = st_geometrycollection(list(st_point(0:1), st_linestring(matrix(1:4,2)))) 288s > grb = st_as_grob(gc) 288s > 288s END TEST grid.R with result 0 288s BEGIN TEST maps.R 288s 288s R version 4.4.3 (2025-02-28) -- "Trophy Case" 288s Copyright (C) 2025 The R Foundation for Statistical Computing 288s Platform: x86_64-pc-linux-gnu 288s 288s R is free software and comes with ABSOLUTELY NO WARRANTY. 288s You are welcome to redistribute it under certain conditions. 288s Type 'license()' or 'licence()' for distribution details. 288s 288s R is a collaborative project with many contributors. 288s Type 'contributors()' for more information and 288s 'citation()' on how to cite R or R packages in publications. 288s 288s Type 'demo()' for some demos, 'help()' for on-line help, or 288s 'help.start()' for an HTML browser interface to help. 288s Type 'q()' to quit R. 288s 288s > suppressPackageStartupMessages(library(sf)) 289s > 289s > if (require(maps, quietly = TRUE)) { 289s + m = map(xlim = c(4,9), ylim = c(48,55), fill = TRUE, plot = FALSE) 289s + st_as_sf(m) 289s + m = map(xlim = c(4,9), ylim = c(48,55), plot = FALSE) 289s + st_as_sf(m, fill = FALSE) 289s + st_as_sf(map(), fill = FALSE) 289s + st_as_sf(map(fill = TRUE)) 289s + st_as_sf(map(), fill = FALSE, group = FALSE) 289s + st_as_sf(map(fill = TRUE), group = FALSE) 289s + } 290s Simple feature collection with 1627 features and 1 field 290s Geometry type: MULTIPOLYGON 290s Dimension: XY 290s Bounding box: xmin: -180 ymin: -85.19218 xmax: 190.2708 ymax: 83.59961 290s Geodetic CRS: +proj=longlat +ellps=clrk66 +no_defs +type=crs 290s First 10 features: 290s ID 290s Aruba Aruba 290s Afghanistan Afghanistan 290s Angola Angola 290s Angola:Cabinda Angola:Cabinda 290s Anguilla Anguilla 290s Albania Albania 290s Finland:Aland Islands:Foglo Finland:Aland Islands:Foglo 290s Finland:Aland Islands:Eckero Finland:Aland Islands:Eckero 290s Finland:Aland Islands:Fasta Aland Finland:Aland Islands:Fasta Aland 290s Andorra Andorra 290s geom 290s Aruba MULTIPOLYGON (((-69.89912 1... 290s Afghanistan MULTIPOLYGON (((74.89131 37... 290s Angola MULTIPOLYGON (((23.9665 -10... 290s Angola:Cabinda MULTIPOLYGON (((12.21367 -5... 290s Anguilla MULTIPOLYGON (((-63.00122 1... 290s Albania MULTIPOLYGON (((20.06396 42... 290s Finland:Aland Islands:Foglo MULTIPOLYGON (((20.61133 60... 290s Finland:Aland Islands:Eckero MULTIPOLYGON (((19.6623 60.... 290s Finland:Aland Islands:Fasta Aland MULTIPOLYGON (((19.98955 60... 290s Andorra MULTIPOLYGON (((1.706055 42... 290s > 290s END TEST maps.R with result 0 290s BEGIN TEST plot.R 290s 290s R version 4.4.3 (2025-02-28) -- "Trophy Case" 290s Copyright (C) 2025 The R Foundation for Statistical Computing 290s Platform: x86_64-pc-linux-gnu 290s 290s R is free software and comes with ABSOLUTELY NO WARRANTY. 290s You are welcome to redistribute it under certain conditions. 290s Type 'license()' or 'licence()' for distribution details. 290s 290s R is a collaborative project with many contributors. 290s Type 'contributors()' for more information and 290s 'citation()' on how to cite R or R packages in publications. 290s 290s Type 'demo()' for some demos, 'help()' for on-line help, or 290s 'help.start()' for an HTML browser interface to help. 290s Type 'q()' to quit R. 290s 290s > suppressPackageStartupMessages(library(sf)) 291s > options(rgdal_show_exportToProj4_warnings = "none") 291s > 291s > if (require(dplyr, quietly = TRUE)) { 291s + 291s + # plot linestrings: 291s + l1 = st_linestring(matrix(runif(6)-0.5,,2)) 291s + l2 = st_linestring(matrix(runif(6)-0.5,,2)) 291s + l3 = st_linestring(matrix(runif(6)-0.5,,2)) 291s + s = st_sf(a=2:4, b=st_sfc(l1,l2,l3)) 291s + plot(s, col = s$a, axes = FALSE) 291s + plot(s, col = s$a) 291s + if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) { 291s + attr(s$b, "proj4string") = sp::CRS("+proj=longlat +ellps=WGS84 +no_defs")@projargs 291s + } 291s + plot(s, col = s$a, axes = TRUE) 291s + plot(s, col = s$a, lty = s$a, lwd = s$a, pch = s$a, type = 'b') 291s + l4 = st_linestring(matrix(runif(6),,2)) 291s + plot(st_sf(a=1,b=st_sfc(l4)), add = TRUE) 291s + # plot multilinestrings: 291s + ml1 = st_multilinestring(list(l1, l2)) 291s + ml2 = st_multilinestring(list(l3, l4)) 291s + ml = st_sf(a = 2:3, b = st_sfc(ml1, ml2)) 291s + plot(ml, col = ml$a, lty = ml$a, lwd = ml$a, pch = ml$a, type = 'b') 291s + # plot points: 291s + p1 = st_point(c(1,2)) 291s + p2 = st_point(c(3,3)) 291s + p3 = st_point(c(3,0)) 291s + p = st_sf(a=2:4, b=st_sfc(p1,p2,p3)) 291s + plot(p, col = s$a, axes = TRUE) 291s + plot(p, col = s$a) 291s + plot(p, col = p$a, pch = p$a, cex = p$a, bg = s$a, lwd = 2, lty = 2, type = 'b') 291s + p4 = st_point(c(2,2)) 291s + plot(st_sf(a=1, st_sfc(p4)), add = TRUE) 291s + # multipoints: 291s + mp1 = st_multipoint(matrix(1:4,2)) 291s + mp2 = st_multipoint(matrix(5:8,2)) 291s + mp = st_sf(a = 2:3, b = st_sfc(mp1, mp2)) 291s + plot(mp) 291s + plot(mp, col = mp$a, pch = mp$a, cex = mp$a, bg = mp$a, lwd = mp$a, lty = mp$a, type = 'b') 291s + # polygon: 291s + outer = matrix(c(0,0,10,0,10,10,0,10,0,0),ncol=2, byrow=TRUE) 291s + hole1 = matrix(c(1,1,1,2,2,2,2,1,1,1),ncol=2, byrow=TRUE) 291s + hole2 = matrix(c(5,5,5,6,6,6,6,5,5,5),ncol=2, byrow=TRUE) 291s + pl1 = st_polygon(list(outer, hole1, hole2)) 291s + pl2 = st_polygon(list(outer+10, hole1+10, hole2+10)) 291s + po = st_sf(a = 2:3, st_sfc(pl1,pl2)) 291s + plot(po, col = po$a, border = rev(po$a), lwd=3) 291s + # multipolygon 291s + r10 = matrix(rep(c(0,10),each=5),5) 291s + pl1 = list(outer, hole1, hole2) 291s + pl2 = list(outer+10, hole1+10, hole2+10) 291s + pl3 = list(outer+r10, hole1+r10, hole2+r10) 291s + mpo1 = st_multipolygon(list(pl1,pl2)) 291s + mpo2 = st_multipolygon(list(pl3)) 291s + mpo = st_sf(a=2:3, b=st_sfc(mpo1,mpo2)) 291s + plot(mpo, col = mpo$a, border = rev(mpo$a), lwd = 2) 291s + # geometrycollection: 291s + gc1 = st_geometrycollection(list(mpo1, st_point(c(21,21)), l1 * 2 + 21)) 291s + gc2 = st_geometrycollection(list(mpo2, l2 - 2, l3 - 2, st_point(c(-1,-1)))) 291s + gc = st_sf(a=2:3, b = st_sfc(gc1,gc2)) 291s + plot(gc, cex = gc$a, col = gc$a, border = rev(gc$a) + 2, lwd = 2) 291s + 291s + plot(gc1) 291s + 291s + plot(st_sfc(mp1, mpo1)) 291s + 291s + # color ramp 291s + nc = st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE) 291s + plot(nc) 291s + plot(nc, axes = TRUE) 291s + plot(nc, col="lightgrey") 291s + plot(st_centroid(nc), add = TRUE, col = 1) 291s + if ("geometry" %in% names(nc)) { 291s + nc %>% 291s + select(geometry) %>% 291s + plot() 291s + } 291s + 291s + nc$f = cut(nc[[1]], 5) 291s + plot(nc["f"], key.pos = 1) 291s + plot(nc[1], key.pos = 1) 291s + 291s + # test background map plotting: 291s + load("bgmap.rda") 291s + merc = st_crs(3857) 291s + WGS84 = st_crs(4326) 291s + nc = st_transform(nc, WGS84) 291s + ## ggmap: 291s + #library(ggmap) 291s + #bgMap = get_map(unname(st_bbox(nc)), source = "google", zoom = 8) 291s + plot(st_transform(nc[1], merc), bgMap = bgMap) 291s + 291s + # RgoogleMaps: 291s + #library(RgoogleMaps) 291s + #center = c(mean(st_bbox(nc)[c(2,4)]), mean(st_bbox(nc)[c(1,3)])) 291s + #g = GetMap(center=center, zoom=6) # google 291s + par(mar = c(0,0,1,0)) 291s + plot(st_transform(nc, merc), bgMap = g) 291s + 291s + m = st_make_grid() 291s + st_crs(m) = NA_crs_ 291s + m = st_segmentize(m, 2) 291s + st_crs(m) = 4326 291s + plot(m, axes = TRUE) 291s + g = st_transform(m, st_crs("+proj=ortho +lat_0=30 +lon_0=45"), check = TRUE) 291s + plot(g, axes = TRUE) 291s + 291s + nc[[1]] = NA 291s + nc[[10]] = 1 291s + plot(nc, pal = rainbow, nbreaks = 3) 291s + plot(nc, pal = rainbow, breaks = "jenks", nbreaks = 3) 291s + plot(nc, pal = rainbow, breaks = (0:10)/3) 291s + 291s + # logz: 291s + nc$e = 10^(nc$SID74) 291s + plot(nc["e"], logz = TRUE) 291s + 291s + # shared key: 291s + plot(nc[c("SID74", "SID79")], key.pos = -1) 291s + plot(nc[c("BIR74", "BIR79")], key.pos = 1, logz=TRUE) 291s + } 291s 291s Attaching package: 'dplyr' 291s 291s The following objects are masked from 'package:stats': 291s 291s filter, lag 291s 291s The following objects are masked from 'package:base': 291s 291s intersect, setdiff, setequal, union 291s 295s There were 13 warnings (use warnings() to see them) 295s > 295s END TEST plot.R with result 0 295s BEGIN TEST read.R 295s 295s R version 4.4.3 (2025-02-28) -- "Trophy Case" 295s Copyright (C) 2025 The R Foundation for Statistical Computing 295s Platform: x86_64-pc-linux-gnu 295s 295s R is free software and comes with ABSOLUTELY NO WARRANTY. 295s You are welcome to redistribute it under certain conditions. 295s Type 'license()' or 'licence()' for distribution details. 295s 295s R is a collaborative project with many contributors. 295s Type 'contributors()' for more information and 295s 'citation()' on how to cite R or R packages in publications. 295s 295s Type 'demo()' for some demos, 'help()' for on-line help, or 295s 'help.start()' for an HTML browser interface to help. 295s Type 'q()' to quit R. 295s 296s > Sys.setenv(TZ="UTC") 296s > suppressPackageStartupMessages(library(sf)) 296s > if ("GPKG" %in% st_drivers()$name) { 296s + tst = st_read(system.file("gpkg/nc.gpkg", package="sf"), "nc.gpkg", crs = 4267, quiet = TRUE) 296s + tst = st_read(system.file("gpkg/nc.gpkg", package="sf"), quiet = TRUE) # default layer name 296s + } 296s > 296s > tst = st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE) # no layer specified 296s > 296s > # data from https://github.com/edzer/sfr/issues/6 296s > tst = st_read(system.file("shape/storms_xyz.shp", package="sf"), quiet = TRUE) 296s > class(st_geometry(tst)) 296s [1] "sfc_LINESTRING" "sfc" 296s > class(st_geometry(tst)[[1]]) 296s [1] "XYZ" "LINESTRING" "sfg" 296s > tst = st_read(system.file("shape/storms_xyzm.shp", package="sf"), quiet = TRUE) 296s > class(st_geometry(tst)) 296s [1] "sfc_LINESTRING" "sfc" 296s > class(st_geometry(tst)[[1]]) 296s [1] "XYM" "LINESTRING" "sfg" 296s > tst = st_read(system.file("shape/storms_xyz_feature.shp", package="sf"), quiet = TRUE) 296s > class(st_geometry(tst)) 296s [1] "sfc_LINESTRING" "sfc" 296s > class(st_geometry(tst)[[1]]) 296s [1] "XYZ" "LINESTRING" "sfg" 296s > tst = st_read(system.file("shape/storms_xyzm_feature.shp", package="sf"), quiet = TRUE) 296s > class(st_geometry(tst)) 296s [1] "sfc_LINESTRING" "sfc" 296s > class(st_geometry(tst)[[1]]) 296s [1] "XYM" "LINESTRING" "sfg" 296s > 296s > if ("GPKG" %in% st_drivers()$name) { # read Int64 296s + print(st_read(system.file("gpkg/tl.gpkg", package="sf"), quiet = TRUE)$AWATER) 296s + print(st_read(system.file("gpkg/tl.gpkg", package="sf"), quiet = TRUE, int64_as_string = TRUE)$AWATER) 296s + } 296s [1] 1028678842 296s [1] "1028678842" 296s > 296s > # see https://github.com/edzer/sfr/issues/45 : 296s > if ("OSM" %in% st_drivers()$name && Sys.info()['sysname'] != "Darwin") { 296s + osm = system.file("osm/overpass.osm", package="sf") 296s + osm_l = st_layers(osm) 296s + osm_lc = suppressWarnings(st_layers(osm, do_count = TRUE)) 296s + osm_r = suppressWarnings(st_read(osm, "multipolygons", quiet = TRUE)) 296s + } 296s > 296s > # layer opening option: 296s > st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE, 296s + options = c("ADJUST_TYPE=YES", "ENCODING=CPL_ENC_UTF8")) 296s Simple feature collection with 100 features and 14 fields 296s Geometry type: MULTIPOLYGON 296s Dimension: XY 296s Bounding box: xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965 296s Geodetic CRS: NAD27 296s First 10 features: 296s AREA PERIMETER CNTY_ CNTY_ID NAME FIPS FIPSNO CRESS_ID BIR74 SID74 296s 1 Error : Open failed. 296s 296s Error : Cannot open "foo"; The file doesn't seem to exist. 296s Error : Cannot open "x.gpkg"; The file doesn't seem to exist. 296s Error in UseMethod("st_write") : 296s no applicable method for 'st_write' applied to an object of class "character" 296s writing: substituting ENGCRS["Undefined Cartesian SRS with unknown unit"] for missing CRS 296s Error in guess_driver(dns) : length(dsn) == 1 is not TRUE 296s writing: substituting ENGCRS["Undefined Cartesian SRS with unknown unit"] for missing CRS 296s Error : Driver not available. 296s 296s writing: substituting ENGCRS["Undefined Cartesian SRS with unknown unit"] for missing CRS 296s writing: substituting ENGCRS["Undefined Cartesian SRS with unknown unit"] for missing CRS 296s 0.114 1.442 1825 1825 Ashe 37009 37009 5 1091 1 296s 2 0.061 1.231 1827 1827 Alleghany 37005 37005 3 487 0 296s 3 0.143 1.630 1828 1828 Surry 37171 37171 86 3188 5 296s 4 0.070 2.968 1831 1831 Currituck 37053 37053 27 508 1 296s 5 0.153 2.206 1832 1832 Northampton 37131 37131 66 1421 9 296s 6 0.097 1.670 1833 1833 Hertford 37091 37091 46 1452 7 296s 7 0.062 1.547 1834 1834 Camden 37029 37029 15 286 0 296s 8 0.091 1.284 1835 1835 Gates 37073 37073 37 420 0 296s 9 0.118 1.421 1836 1836 Warren 37185 37185 93 968 4 296s 10 0.124 1.428 1837 1837 Stokes 37169 37169 85 1612 1 296s NWBIR74 BIR79 SID79 NWBIR79 geometry 296s 1 10 1364 0 19 MULTIPOLYGON (((-81.47276 3... 296s 2 10 542 3 12 MULTIPOLYGON (((-81.23989 3... 296s 3 208 3616 6 260 MULTIPOLYGON (((-80.45634 3... 296s 4 123 830 2 145 MULTIPOLYGON (((-76.00897 3... 296s 5 1066 1606 3 1197 MULTIPOLYGON (((-77.21767 3... 296s 6 954 1838 5 1237 MULTIPOLYGON (((-76.74506 3... 296s 7 115 350 2 139 MULTIPOLYGON (((-76.00897 3... 296s 8 254 594 2 371 MULTIPOLYGON (((-76.56251 3... 296s 9 748 1190 2 844 MULTIPOLYGON (((-78.30876 3... 296s 10 160 2038 5 176 MULTIPOLYGON (((-80.02567 3... 296s > 296s > x <- st_sf(a = 1:2, geom = st_sfc(st_point(0:1), st_multipoint(matrix(1:4,2,2)))) 296s > 296s > try(st_layers("foo")) # cannot open datasource 296s Cannot open data source foo 296s > try(st_read("foo")) # cannot open datasource 296s > try(st_read("x.gpkg", "xyz")) # cannot open layer 296s > try(st_write(c("foo", "bar"))) 296s > try(st_write(x, c("foo", "bar"))) 296s > try(st_write(x, "foo", driver = "foo")) 296s driver `foo' not available. 296s > if (Sys.getenv("USER") == "travis") { 296s + try(st_write(x, "/x", driver = "ESRI Shapefile")) 296s + st_write(x, "xxx.gpkg") 296s + st_write(x, "xxx.gpkg", append = TRUE, quiet = FALSE) # appends to layer 296s + y <- st_sf(b = 1:2, geom = st_sfc(st_point(0:1), st_multipoint(matrix(1:4,2,2)))) 296s + try(st_write(y, "xxx.gpkg")) 296s + } 296s > 296s > geom = st_sfc(st_point(0:1), st_multipoint(matrix(1:4,2,2))) 296s > st_write(geom, "geom.gpkg") 296s Writing layer `geom' to data source `geom.gpkg' using driver `GPKG' 296s Writing 2 features with 0 fields and geometry type Unknown (any). 296s > st_write(geom, "geom1.gpkg", layer = "foo") 296s Writing layer `foo' to data source `geom1.gpkg' using driver `GPKG' 296s writing: substituting ENGCRS["Undefined Cartesian SRS with unknown unit"] for missing CRS 296s Writing 2 features with 0 fields and geometry type Unknown (any). 296s > 296s > df <- data.frame( 296s + a = c(0, 1, NA, -Inf, Inf), 296s + b = c("a", "b", NA, "c", ""), 296s + c = c(as.Date("2001-01-01"), 296s + as.Date(c(NA, -99, 0, 1), origin = "1970-01-01")), 296s + d = c(as.POSIXct("2001-01-01"), 296s + as.POSIXct(c(NA, -99, 0, 1), origin = "1970-01-01")), 296s + x = 1:5, 296s + y = 1:5) 296s > 296s > x = st_as_sf(df, coords = c("x", "y")) 296s > 296s > if ("GPKG" %in% st_drivers()$name) { 296s + st_write(x, "x2.gpkg", quiet = TRUE) 296s + y = st_read("x2.gpkg", quiet = TRUE) 296s + print(y) 296s + } 296s Simple feature collection with 5 features and 4 fields 296s Geometry type: POINT 296s Dimension: XY 296s Bounding box: xmin: 1 ymin: 1 xmax: 5 ymax: 5 296s Projected CRS: Undefined Cartesian SRS with unknown unit 296s a b c d geom 296s 1 0 a 2001-01-01 2001-01-01 00:00:00Loading required package: RSQLite 296s POINT (1 1) 296s 2 1 b POINT (2 2) 296s 3 NA 1969-09-24 1969-12-31 23:58:21 POINT (3 3) 296s 4 -Inf c 1970-01-01 1970-01-01 00:00:00 POINT (4 4) 296s 5 Inf 1970-01-02 1970-01-01 00:00:01 POINT (5 5) 296s > 296s > if ("SQLite" %in% st_drivers()$name && require(RSQLite)) { 296s + db = system.file("sqlite/meuse.sqlite", package = "sf") 296s + dbcon <- dbConnect(dbDriver("SQLite"), db) 296s + m = dbReadTable(dbcon, "meuse.sqlite") 296s + m$GEOMETRY = st_as_sfc(m$GEOMETRY, spatialite = FALSE) # ISO wkb 296s + print(st_sf(m), n = 3) 296s + # or: 296s + (s = st_read(dbcon, "meuse.sqlite"))[1:3,] 296s + dbDisconnect(dbcon) 296s + 296s + db = system.file("sqlite/nc.sqlite", package = "sf") 296s + dbcon <- dbConnect(dbDriver("SQLite"), db) 296s + m = dbReadTable(dbcon, "nc.sqlite") 296s + m$GEOMETRY = st_as_sfc(m$GEOMETRY, spatialite = FALSE) # ISO wkb 296s + print(st_sf(m), n = 3) 296s + dbDisconnect(dbcon) 296s + 296s + db = system.file("sqlite/b.sqlite", package = "sf") # has an INT8 field 296s + b = st_read(db, quiet = TRUE) 296s + print(b) 296s + b = st_read(db, int64_as_string = TRUE, quiet = TRUE) 296s + print(b) 296s + 296s + if (.Platform$endian == "little") { 296s + db = system.file("sqlite/test3.sqlite", package = "sf") 296s + dbcon <- dbConnect(dbDriver("SQLite"), db) 296s + m = dbReadTable(dbcon, "HighWays") 296s + m$Geometry = st_as_sfc(m$Geometry, spatialite = TRUE) # spatialite wkb 296s + print(st_sf(m), n = 1) 296s + m = dbReadTable(dbcon, "Towns") 296s + m$Geometry = st_as_sfc(m$Geometry, spatialite = TRUE) # spatialite wkb 296s + print(st_sf(m), n = 1) 296s + m = dbReadTable(dbcon, "Regions") 296s + m$Geometry = st_as_sfc(m$Geometry, spatialite = TRUE) # spatialite wkb 296s + print(st_sf(m), n = 1) 296s + } 296s + } 297s Simple feature collection with 155 features and 13 fields 297s Geometry type: POINT 297s Dimension: XY 297s Bounding box: xmin: 178605 ymin: 329714 xmax: 181390 ymax: 333611 297s CRS: NA 297s First 3 features: 297s ogc_fid cadmium copper lead zinc elev dist om ffreq soil lime 297s 1 1 11.7 85 299 1022 7.909 0.00135803 13.6 1 1 1 297s 2 2 8.6 81 277 1141 6.983 0.01222430 14.0 1 1 1 297s 3 3 6.5 68 199 640 7.800 0.10302900 13.0 1 1 1 297s landuse dist.m GEOMETRY 297s 1 Ah 50 POINT (181072 333611) 297s 2 Ah 30 POINT (181025 333558) 297s 3 Ah 150 POINT (181165 333537) 297s Simple feature collection with 100 features and 15 fields 297s Geometry type: MULTIPOLYGON 297s Dimension: XY 297s Bounding box: xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965 297s CRS: NA 297s First 3 features: 297s ogc_fid area perimeter cnty_ cnty_id name fips fipsno cress_id bir74 297s 1 1 0.114 1.442 1825 1825 Ashe 37009 37009 5 1091 297s 2 2 0.061 1.231 1827 1827 Alleghany 37005 37005 3 487 297s 3 3 0.143 1.630 1828 1828 Surry 37171 37171 86 3188 297s sid74 nwbir74 bir79 sid79 nwbir79 GEOMETRY 297s 1 1 10 1364 0 19 MULTIPOLYGON (((-81.47276 3... 297s 2 0 10 542 3 12 MULTIPOLYGON (((-81.23989 3... 297s 3 5 208 3616 6 260 MULTIPOLYGON (((-80.45634 3... 297s Integer64 values larger than 9.0072e+15 lost significance after conversion to double; 297s use argument int64_as_string = TRUE to import them lossless, as character 297s Simple feature collection with 1 feature and 2 fields 297s Geometry type: POINT 297s Dimension: XY 297s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 297s CRS: NA 297s a bigint GEOMETRY 297s 1 1 4.611686e+18 POINT (0 1) 297s Simple feature collection with 1 feature and 2 fields 297s Geometry type: POINT 297s Dimension: XY 297s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 297s CRS: NA 297s a bigint GEOMETRY 297s 1 1 4611686018427387904 POINT (0 1) 297s Simple feature collection with 10 features and 2 fields 297s Geometry type: LINESTRING 297s Dimension: XY 297s Bounding box: xmin: 645003 ymin: 4822568 xmax: 748805.6 ymax: 4992001 297s Projected CRS: WGS 84 / UTM zone 32N 297s First 1 features: 297s PK_UID Name Geometry 297s 1 1 Unknown LINESTRING (668540.7 485826... 297s Simple feature collection with 8101 features and 6 fields 297s Geometry type: POINT 297s Dimension: XY 297s Bounding box: xmin: 319224 ymin: 3934674 xmax: 1308585 ymax: 5214373 297s Projected CRS: WGS 84 / UTM zone 32N 297s First 1 features: 297s PK_UID Name Peoples LocalCounc County Region Geometry 297s 1 1 Brozolo 435 1 0 0 POINT (427002.8 4996361) 297s Simple feature collection with 10 features and 2 fields 297s Geometry type: MULTIPOLYGON 297s Dimension: XY 297s Bounding box: xmin: 378359.8 ymin: 4198234 xmax: 1211486 ymax: 5036803 297s Projected CRS: WGS 84 / UTM zone 32N 297s First 1 features: 297s PK_UID Name Geometry 297s 1 1 VENETO MULTIPOLYGON (((752912.3 50... 297s > 297s > csv = system.file("csv/pt.csv", package = "sf") 297s > identical(st_read(quiet = TRUE, csv, options = "AUTODETECT_TYPE=Yes")$Int64[3], NA_real_) 297s [1] TRUE 297s > identical(st_read(quiet = TRUE, csv, int64_as_string = TRUE, stringsAsFactors = FALSE, 297s + options = "AUTODETECT_TYPE=Yes")$Int64[3], NA_character_) 297s [1] TRUE 297s > identical(st_read(quiet = TRUE, csv, options = "AUTODETECT_TYPE=Yes")$Int32[3], NA_integer_) 297s [1] TRUE 297s > 297s > if ("GML" %in% st_drivers()$name) { 297s + gml = system.file("gml/fmi_test.gml", package = "sf") 297s + print(dim(st_read(gml, quiet = TRUE, use_stream = FALSE))) 297s + gml = system.file("gml/20170930_OB_530964_UKSH.xml.gz", package = "sf") 297s + print(dim(st_read(gml, layer = "Parcely", quiet = TRUE, use_stream = FALSE))) 297s + print(dim(st_read(gml, layer = "Parcely", int64_as_string=TRUE, quiet = TRUE, use_stream = FALSE))) 297s + } 297s [1] 22 11 297s [1] 644 25 297s Warning messages: 297s 1: In CPL_read_ogr(dsn, layer, query, as.character(options), quiet, : 297s GDAL Message 1: Field with same name (identifier) already exists in (PointTimeSeriesObservation). Skipping newer ones 297s 2: In CPL_read_ogr(dsn, layer, query, as.character(options), quiet, : 297s GDAL Message 1: Field with same name (name) already exists in (PointTimeSeriesObservation). Skipping newer ones 297s [1] 644 25 297s > 297s > # logical: 297s > if ("GPKG" %in% st_drivers()$name) { 297s + tst = read_sf(system.file("gpkg/nc.gpkg", package="sf"), quiet = TRUE) # default layer name 297s + tst$bool = tst$NWBIR79 > 800 # logical 297s + tst$bool[1:3] = NA 297s + write_sf(tst, "tst__.gpkg") 297s + tst2 = read_sf("tst__.gpkg") 297s + stopifnot(identical(tst$bool, tst2$bool)) 297s + } 297s > 297s > # spatial filter: 297s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf")) 297s > wkt = st_as_text(st_geometry(nc[1,])) 297s > wkt 297s [1] "MULTIPOLYGON (((-81.47276 36.23436, -81.54084 36.27251, -81.56198 36.27359, -81.63306 36.34069, -81.74107 36.39178, -81.69828 36.47178, -81.7028 36.51934, -81.67 36.58965, -81.3453 36.57286, -81.34754 36.53791, -81.32478 36.51368, -81.31332 36.4807, -81.26624 36.43721, -81.26284 36.40504, -81.24069 36.37942, -81.23989 36.36536, -81.26424 36.35241, -81.32899 36.3635, -81.36137 36.35316, -81.36569 36.33905, -81.35413 36.29972, -81.36745 36.2787, -81.40639 36.28505, -81.41233 36.26729, -81.43104 36.26072, -81.45289 36.23959, -81.47276 36.23436)))" 297s > nc_filtered = read_sf(system.file("gpkg/nc.gpkg", package="sf"), wkt_filter = wkt) 297s Error : wkt parse error. 297s 297s > try(read_sf(system.file("gpkg/nc.gpkg", package="sf"), wkt_filter = "wrong")) 297s Cannot create geometry from: wrong 297s > nc_filtered$NAME 297s [1] "Watauga" "Ashe" "Wilkes" "Alleghany" 297s > 297s END TEST read.R with result 0 297s BEGIN TEST roundtrip.R 297s 297s R version 4.4.3 (2025-02-28) -- "Trophy Case" 297s Copyright (C) 2025 The R Foundation for Statistical Computing 297s Platform: x86_64-pc-linux-gnu 297s 297s R is free software and comes with ABSOLUTELY NO WARRANTY. 297s You are welcome to redistribute it under certain conditions. 297s Type 'license()' or 'licence()' for distribution details. 297s 297s R is a collaborative project with many contributors. 297s Type 'contributors()' for more information and 297s 'citation()' on how to cite R or R packages in publications. 297s 297s Type 'demo()' for some demos, 'help()' for on-line help, or 297s 'help.start()' for an HTML browser interface to help. 297s Type 'q()' to quit R. 297s 297s > #library(rgdal2) 297s > #openOGRLayer("PG:dbname=postgis" , "meuse2") 297s > 297s > suppressPackageStartupMessages(library(sf)) 298s > options(rgdal_show_exportToProj4_warnings = "none") 298s > outer = matrix(c(0,0,10,0,10,10,0,10,0,0),ncol=2, byrow=TRUE) 298s > hole1 = matrix(c(1,1,1,2,2,2,2,1,1,1),ncol=2, byrow=TRUE) 298s > hole2 = matrix(c(5,5,5,6,6,6,6,5,5,5),ncol=2, byrow=TRUE) 298s > pol1 = list(outer, hole1, hole2) 298s > pol2 = list(outer + 12, hole1 + 12) 298s > pol3 = list(outer + 24) 298s > mp = list(pol1,pol2,pol3) 298s > mp1 = st_multipolygon(mp) 298s > sf = st_sf(a=1, st_sfc(mp1)) 298s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) { 298s + a = as(sf, "Spatial") 298s + print(class(a)) 298s + b = st_as_sf(a) 298s + a2 = as(a, "SpatialPolygonsDataFrame") 298s + print(all.equal(a, a2)) # round-trip 298s + 298s + b1 = as(a, "sf") 298s + print(all.equal(b, b1)) 298s + b = st_as_sfc(a) 298s + b1 = as(a, "sfc") 298s + print(all.equal(b, b1)) 298s + } 298s [1] "SpatialPolygonsDataFrame" 298s attr(,"package") 298s [1] "sp" 298s [1] TRUE 298s [1] TRUE 298s [1] TRUE 298s > 298s > # SpatialMultiPoints 298s > if (require(sp, quietly = TRUE)) { 298s + suppressWarnings(RNGversion("3.5.3")) 298s + set.seed(1331) 298s + # example(SpatialMultiPoints, ask = FALSE, echo = FALSE) # loads mpdf 298s + cl1 = cbind(rnorm(3, 10), rnorm(3, 10)) 298s + cl2 = cbind(rnorm(5, 10), rnorm(5, 0)) 298s + cl3 = cbind(rnorm(7, 0), rnorm(7, 10)) 298s + mpdf = SpatialMultiPointsDataFrame(list(a=cl1, b=cl2, c=cl3), data.frame(a = 1:3, row.names=c("a", "b", "c"))) 298s + m = st_as_sf(mpdf) 298s + all.equal(as(m, "Spatial"), mpdf) # TRUE 298s + 298s + demo(meuse, ask = FALSE, echo = FALSE) 298s + #meuse = spTransform(meuse, CRS("+proj=longlat +ellps=WGS84 +no_defs")) 298s + pol.grd = as(meuse.grid, "SpatialPolygonsDataFrame") 298s + #meuse.grd = spTransform(meuse.grid, CRS("+proj=longlat +ellps=WGS84 +no_defs")) 298s + #pol.grd = spTransform(pol.grd, CRS("+proj=longlat +ellps=WGS84 +no_defs")) 298s + #meuse.area = spTransform(meuse.area, CRS("+proj=longlat +ellps=WGS84 +no_defs")) 298s + #meuse.riv = spTransform(meuse.riv, CRS("+proj=longlat +ellps=WGS84 +no_defs")) 298s + #summary(st_as_sf(meuse)) 298s + #summary(st_as_sf(meuse.grd)) 298s + #x <- st_as_sf(meuse.grid) # don't print: CRS variations. 298s + #summary(st_as_sf(meuse.area)) 298s + #summary(st_as_sf(meuse.riv)) 298s + #summary(st_as_sf(as(meuse.riv, "SpatialLines"))) 298s + #summary(st_as_sf(pol.grd)) 298s + #summary(st_as_sf(as(pol.grd, "SpatialLinesDataFrame"))) 298s + 298s + nc = st_read(system.file("gpkg/nc.gpkg", package="sf"), "nc.gpkg", quiet = TRUE) 298s + all.equal(nc, st_as_sf(as(nc, "Spatial"))) 298s + st_crs(nc) == st_crs(st_as_sf(as(nc, "Spatial"))) 298s + 298s + detach("package:sp") 298s + } 299s > 299s END TEST roundtrip.R with result 0 299s BEGIN TEST sample.R 299s 299s R version 4.4.3 (2025-02-28) -- "Trophy Case" 299s Copyright (C) 2025 The R Foundation for Statistical Computing 299s Platform: x86_64-pc-linux-gnu 299s 299s R is free software and comes with ABSOLUTELY NO WARRANTY. 299s You are welcome to redistribute it under certain conditions. 299s Type 'license()' or 'licence()' for distribution details. 299s 299s R is a collaborative project with many contributors. 299s Type 'contributors()' for more information and 299s 'citation()' on how to cite R or R packages in publications. 299s 299s Type 'demo()' for some demos, 'help()' for on-line help, or 299s 'help.start()' for an HTML browser interface to help. 299s Type 'q()' to quit R. 299s 299s > suppressPackageStartupMessages(library(sf)) 299s > bb = st_bbox(c(xmin=0, ymin=1, xmax=3, ymax=2)) 299s > xx <- st_make_grid(st_as_sfc(bb), square = FALSE, what = "polygons") 299s > plot(xx, border = 'green', main = "pointy topped") 299s > x <- st_make_grid(st_as_sfc(bb), square = FALSE, what = "points") 299s > plot(x, add = TRUE) 299s > x <- st_make_grid(st_as_sfc(bb), square = FALSE, what = "corners") 299s > plot(x, col = 'orange', add = TRUE) 299s > plot(st_as_sfc(bb), add = TRUE, border = 'red') 299s > st_overlaps(xx) %>% 299s + lengths() %>% 299s + sum() 299s [1] 0 299s > 299s > st_as_sfc(bb) %>% 299s + st_difference(st_union(xx)) %>% 299s + st_area() 299s numeric(0) 299s > 299s > xx <- st_make_grid(st_as_sfc(bb), square = FALSE, what = "polygons", flat_topped = TRUE) 299s > plot(xx, border = 'green', main = "flat topped") 299s > x <- st_make_grid(st_as_sfc(bb), square = FALSE, what = "points", flat_topped = TRUE) 299s > plot(x, add = TRUE) 299s > x <- st_make_grid(st_as_sfc(bb), square = FALSE, what = "corners", flat_topped = TRUE) 299s > plot(x, col = 'orange', add = TRUE) 299s > plot(st_as_sfc(bb), add = TRUE, border = 'red') 299s > st_overlaps(xx) %>% 299s + lengths() %>% 299s + sum() 299s [1] 0 299s > 299s > st_as_sfc(bb) %>% 299s + st_difference(st_union(xx)) %>% 299s + st_area() 299s numeric(0) 299s > 299s END TEST sample.R with result 0 299s BEGIN TEST sfc.R 300s 300s R version 4.4.3 (2025-02-28) -- "Trophy Case" 300s Copyright (C) 2025 The R Foundation for Statistical Computing 300s Platform: x86_64-pc-linux-gnu 300s 300s R is free software and comes with ABSOLUTELY NO WARRANTY. 300s You are welcome to redistribute it under certain conditions. 300s Type 'license()' or 'licence()' for distribution details. 300s 300s R is a collaborative project with many contributors. 300s Type 'contributors()' for more information and 300s 'citation()' on how to cite R or R packages in publications. 300s 300s Type 'demo()' for some demos, 'help()' for on-line help, or 300s 'help.start()' for an HTML browser interface to help. 300s Type 'q()' to quit R. 300s 300s > suppressPackageStartupMessages(library(sf)) 300s > 300s > p = st_point(c(1/3,1/6)) 300s > st_sfc(p, precision = 1000) 300s Geometry set for 1 feature 300s Geometry type: POINT 300s Dimension: XY 300s Bounding box: xmin: 0.3333333 ymin: 0.1666667 xmax: 0.3333333 ymax: 0.1666667 300s CRS: NA 300s Precision: 1000 300s > st_as_sfc(st_as_binary(st_sfc(p, precision = 0L))) 300s Geometry set for 1 feature POINT (0.3333333 0.1666667) 300s 300s Geometry type: POINT 300s Dimension: XY 300s Bounding box: xmin: 0.3333333 ymin: 0.1666667 xmax: 0.3333333 ymax: 0.1666667 300s CRS: NA 300s > st_as_sfc(st_as_binary(st_sfc(p, precision = 1000))) 300s Geometry set for 1 feature 300s Geometry type: POINT 300s Dimension: XY 300s Bounding box: xmin: 0.333 ymin: 0.167 xmax: 0.333 ymax: 0.167 300s CRS: NA 300s > st_as_sfc(st_as_binary(st_sfc(p, precision = 1000000))) 300s Geometry set for 1 feature 300s Geometry type: POINT 300s Dimension: XY 300s Bounding box: xmin: 0.333333 ymin: 0.166667 xmax: 0.333333 ymax: 0.166667 300s CRS: NA 300s > st_as_sfc(st_as_binary(st_sfc(p, precision = 10L))) 300s POINT (0.3333333 0.1666667) 300s POINT (0.333 0.167) 300s POINT (0.333333 0.166667) 300s Geometry set for 1 feature 300s Geometry type: POINT 300s Dimension: XY 300s Bounding box: xmin: 0.3 ymin: 0.2 xmax: 0.3 ymax: 0.2 300s CRS: NA 300s > st_as_sfc(st_as_binary(st_sfc(p, precision = -1))) 300s Geometry set for 1 feature 300s Geometry type: POINT 300s Dimension: XY 300s Bounding box: xmin: 0.3333333 ymin: 0.1666667 xmax: 0.3333333 ymax: 0.1666667 300s CRS: NA 300s > 300s > d = data.frame(a = 1:2) 300s > d$geom = c("POINT(0 0)", "POINT(1 1)") 300s > 300s > st_as_sf(d, wkt = "geom") 300s Simple feature collection with 2 features and 1 field 300s Geometry type: POINT 300s Dimension: XY 300s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 300s CRS: NA 300s a geom 300s 1 1 POINT (0 0) 300s 2 2 POINT (1 1) 300s > st_as_sf(d, wkt = 2) 300s Simple feature collection with 2 features and 1 field 300s Geometry type: POINT 300s Dimension: XY 300s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 300s CRS: NA 300s a geom 300s 1 1 POINT (0 0) 300s 2 2 POINT (1 1) 300s > st_as_sf(d, wkt = "geom", remove = FALSE) 300s Simple feature collection with 2 features and 2 fields 300s Geometry type: POINT 300s Dimension: XY 300s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 300s CRS: NA 300s a geom geometry 300s 1 1 POINT(0 0) POINT (0 0) 300s 2 2 POINT(1 1) POINT (1 1) 300s > 300s > st_as_sfc(c("POINT(0 0)", "POINT(1 1)")) 300s Geometry set for 2 features 300s Geometry type: POINT 300s Dimension: XY 300s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 300s CRS: NA 300s > st_as_sfc(c("POINT(0 0)", "POINT(1 1)", "POLYGON((0 0,1 1,0 1,0 0))")) 300s Geometry set for 3 features 300s Geometry type: GEOMETRY 300s Dimension: XY 300s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 300s CRS: NA 300s > st_as_sfc(character(0)) 300s Geometry set for 0 features 300s Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA 300s CRS: NA 300s > x = st_as_sfc(character(0), 4326) 300s > y = st_as_sfc(character(0), crs = 4326) 300s > all.equal(x, y) 300s [1] TRUE 300s > st_as_sfc(c("POINT(0 0)", "POINT(1 1)", "POLYGON((0 0,1 1,0 1,0 0))"), 300s + "+proj=longlat +datum=WGS84") 300s Geometry set for 3 features 300s Geometry type: GEOMETRY 300s Dimension: XY 300s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 300s Geodetic CRS: +proj=longlat +datum=WGS84 300s > dg = st_as_sf(d, wkt = "geom") 300s > print(dg, n = 1) 300s Simple feature collection with 2 features and 1 field 300s Geometry type: POINT 300s Dimension: XY 300s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 300s CRS: NA 300s First 1 features: 300s a geom 300s 1 1 POINT (0 0) 300s > head(st_as_sf(d, wkt = "geom"), 1) 300s Simple feature collection with 1 feature and 1 field 300s Geometry type: POINT 300s Dimension: XY 300s Bounding box: xmin: 0 ymin: 0 xmax: 0 ymax: 0 300s CRS: NA 300s POINT (0.3 0.2) 300s POINT (0.3333333 0.1666667) 300s POINT (0 0) 300s POINT (1 1) 300s POINT (0 0) 300s POINT (1 1) 300s POLYGON ((0 0, 1 1, 0 1, 0 0)) 300s POINT (0 0) 300s POINT (1 1) 300s POLYGON ((0 0, 1 1, 0 1, 0 0)) 300s a geom 300s 1 1 POINT (0 0) 300s > 300s > d$geom = st_as_sfc(d$geom) 300s > d1 = d 300s > attr(d1, "sf_col") = "geom" 300s > st_geometry(d1) = d$geom 300s > 300s > d$geometry = d$geom # second geometry list-column 300s > if (require(testthat, quietly = TRUE)) { 300s + expect_warning(st_geometry(d) <- d$geom) 300s + } 300s > d 300s Simple feature collection with 2 features and 1 field 300s Active geometry column: geom 300s Geometry type: POINT 300s Dimension: XY 300s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 300s CRS: NA 300s a geom geometry 300s 1 1 POINT (0 0) POINT (0 0) 300s 2 2 POINT (1 1) POINT (1 1) 300s > 300s > x = st_sfc(list(st_point(0:1), st_point(0:1)), crs = 4326) 300s > # don't warn when replacing crs with identical value: 300s > st_sfc(x, crs = 4326) 301s Geometry set for 2 features POINT (0 1) 301s POINT (0 1) 301s Warning message: 301s st_crs<- : replacing crs does not reproject data; use st_transform for that 301s MULTIPOINT ((0 1)) 301s POINT (0 1) 301s Warning message: 301s In st_cast.MULTIPOINT(mp, "POINT") : point from first coordinate only 301s MULTIPOINT ((0 1), (2 2)) 301s POINT (0 1) 301s Warning message: 301s In st_cast.MULTIPOINT(x[[1]], to, ...) : point from first coordinate only 301s MULTIPOINT ((0 1), (2 2)) 301s MULTIPOINT ((0 1)) 301s Warning message: 301s In st_cast.GEOMETRYCOLLECTION(st_geometrycollection(list(p, mp)), : 301s Geometry type: POINT 301s Dimension: XY 301s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 301s Geodetic CRS: WGS 84 301s > y = st_sfc(x, crs = "+proj=longlat +datum=WGS84 +no_defs") 301s > # but do when it changes: 301s > y = st_sfc(x, crs = 3857) 301s > 301s > p = st_point(0:1) 301s > st_cast(p, "MULTIPOINT") 301s > mp = st_multipoint(rbind(c(0,1), c(2,2))) 301s > st_cast(mp, "POINT") 301s > st_cast(mp, "MULTIPOINT") 301s > 301s > # geometry collection to its elements: 301s > st_cast(st_geometrycollection(list(mp)), "POINT") 301s > st_cast(st_geometrycollection(list(mp)), "MULTIPOINT") 301s > st_cast(st_geometrycollection(list(p,mp)), "MULTIPOINT") 301s > 301s > mp = st_multipoint(rbind(c(0,1))) 301s > x = st_sfc(p, mp) 301s > st_cast(x, "POINT") 301s Geometry set for 2 features 301s Geometry type: POINT 301s Dimension: XY 301s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 301s CRS: NA 301s > 301s > sf = st_sf(a = 3:2, geom = x) 301s > st_cast(sf, "POINT") 301s Simple feature collection with 2 features and 1 field 301s Geometry type: POINT 301s Dimension: XY 301s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 301s CRS: NA 301s a geom 301s 1 3 POINT (0 1) 301s 2 2 POINT (0 1) 301s > 301s > 301s > x %>% st_cast("POINT") 301s Geometry set for 2 features 301s Geometry type: POINT 301s Dimension: XY 301s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 301s CRS: NA 301s > 301s > # points: 301s > mp = st_multipoint(rbind(c(0,1))) # single-point multipoint 301s > st_sfc(p,mp) %>% st_cast("POINT") 301s Geometry set for 2 features 301s Geometry type: POINT 301s Dimension: XY 301s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 301s CRS: NA 301s > st_sfc(p,mp) %>% st_cast("MULTIPOINT") 301s Geometry set for 2 features 301s Geometry type: MULTIPOINT 301s Dimension: XY 301s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 301s CRS: NA 301s > 301s > # lines: 301s > pts = rbind(c(0,0), c(1,1), c(2,1)) 301s > st_sfc(st_linestring(pts), st_multilinestring(list(pts))) %>% st_cast("LINESTRING") 301s Geometry set for 2 features 301s Geometry type: LINESTRING 301s Dimension: XY 301s Bounding box: xmin: 0 ymin: 0 xmax: 2 ymax: 1 301s CRS: NA 301s > st_sfc(st_linestring(pts), st_multilinestring(list(pts))) %>% st_cast("MULTILINESTRING") 301s Geometry set for 2 features 301s Geometry type: MULTILINESTRING 301s Dimension: XY 301s Bounding box: xmin: 0 ymin: 0 xmax: 2 ymax: 1 301s CRS: NA 301s > 301s > # polygons: 301s > pts = rbind(c(0,0), c(1,1), c(0,1), c(0,0)) 301s > st_sfc(st_polygon(list(pts)), st_multipolygon(list(list(pts)))) %>% st_cast("POLYGON") 301s Geometry set for 2 features 301s Geometry type: POLYGON 301s Dimension: XY 301s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 301s CRS: NA 301s > st_sfc(st_polygon(list(pts)), st_multipolygon(list(list(pts)))) %>% st_cast("MULTIPOLYGON") 301s Geometry set for 2 features 301s Geometry type: MULTIPOLYGON 301s Dimension: XY 301s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 301s CRS: NA 301s > 301s > 301s > st_sfc(st_geometrycollection(list(p)), st_geometrycollection(list(mp))) %>% st_cast() 301s Geometry set for 2 features 301s Geometry type: GEOMETRY 301s Dimension: XY 301s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 301s CRS: NA 301s > st_sfc(st_geometrycollection(list(p)), st_geometrycollection(list(mp))) %>% 301s + st_cast() %>% 301s + st_cast("POINT") 301s Geometry set for 2 features 301s Geometry type: POINT 301s Dimension: XY 301s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 301s CRS: NA 301s > 301s > p = rbind(c(0,0),c(1,0),c(1,1),c(0,1),c(0,0)) 301s > pol = st_polygon(list(p)) 301s > # plot(pol) 301s > try(plot(st_polygonize(pol))) # --> breaks 301s > st_length(st_sfc(st_point(c(0,0)))) 301s [1] 0 301s > 301s > try(as(st_sfc(st_linestring(matrix(1:9,3))), "Spatial")) 301s > 301s > # check conus is present: 301s > x = st_sfc(st_point(c(-90,35)), st_point(c(-80,36)), 301s + crs = "+proj=longlat +datum=NAD27") 301s > y = st_transform(x, 3857) 301s 301s only first part of geometrycollection is retained 301s POINT (0 1) 301s POINT (0 1) 301s Warning message: 301s In st_cast.MULTIPOINT(X[[i]], ...) : point from first coordinate only 301s Warning message: 301s In st_cast.MULTIPOINT(X[[i]], ...) : point from first coordinate only 301s POINT (0 1) 301s POINT (0 1) 301s Warning message: 301s In st_cast.MULTIPOINT(X[[i]], ...) : point from first coordinate only 301s POINT (0 1) 301s POINT (0 1) 301s Warning message: 301s In st_cast.MULTIPOINT(X[[i]], ...) : point from first coordinate only 301s MULTIPOINT ((0 1)) 301s MULTIPOINT ((0 1)) 301s LINESTRING (0 0, 1 1, 2 1) 301s LINESTRING (0 0, 1 1, 2 1) 301s MULTILINESTRING ((0 0, 1 1, 2 1)) 301s MULTILINESTRING ((0 0, 1 1, 2 1)) 301s POLYGON ((0 0, 1 1, 0 1, 0 0)) 301s POLYGON ((0 0, 1 1, 0 1, 0 0)) 301s MULTIPOLYGON (((0 0, 1 1, 0 1, 0 0))) 301s MULTIPOLYGON (((0 0, 1 1, 0 1, 0 0))) 301s POINT (0 1) 301s MULTIPOINT ((0 1)) 301s POINT (0 1) 301s POINT (0 1) 301s Warning message: 301s In st_cast.MULTIPOINT(X[[i]], ...) : point from first coordinate only 301s Error in st_polygonize.sfc(st_sfc(x)) : 301s inherits(x, "sfc_LINESTRING") || inherits(x, "sfc_MULTILINESTRING") is not TRUE 301s Error in StopZ(zm) : 301s sp supports Z dimension only for POINT and MULTIPOINT. 301s use `st_zm(...)` to coerce to XY dimensions 301s > 301s > ## IGNORE_RDIFF_BEGIN 301s > sf_extSoftVersion()[1:3] 301s GEOS GDAL proj.4 301s "3.13.0" "3.10.2" "9.5.1" 301s > ## IGNORE_RDIFF_END 301s > 301s > # Ops.sfc: 301s > ls = st_sfc(st_linestring(rbind(c(0,0),c(0,1)))) 301s > ls * 2 301s Geometry set for 1 feature 301s Geometry type: LINESTRING 301s Dimension: XY 301s Bounding box: xmin: 0 ymin: 0 xmax: 0 ymax: 2 301s CRS: NA 301s > ls - 2 301s LINESTRING (0 0, 0 2) 301s Geometry set for 1 feature 301s Geometry type: LINESTRING 301s Dimension: XY 301s Bounding box: xmin: -2 ymin: -2 xmax: -2 ymax: -1 301s CRS: NA 301s > (ls + 2) %% 3 301s Geometry set for 1 feature 301s Geometry type: LINESTRING 301s Dimension: XY 301s Bounding box: xmin: 2 ymin: 0 xmax: 2 ymax: 2 301s CRS: NA 301s > ls / ls 301s LINESTRING (-2 -2, -2 -1) 301s LINESTRING (2 2, 2 0) 301s Geometry set for 1 feature (with 1 geometry empty) 301s Geometry type: GEOMETRYCOLLECTION 301s Dimension: XY 301s Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA 301s CRS: NA 301s > p_ = st_point(0:1) 301s > ll = st_sfc(ls[[1]], p_) 301s > ll & st_sfc(p_) 301s GEOMETRYCOLLECTION EMPTY 301s Geometry set for 2 features 301s Geometry type: POINT 301s Dimension: XY 301s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 301s CRS: NA 301s POINT (0 1) 301s POINT (0 1) 301s > ll | st_sfc(p_) 301s Geometry set for 2 features 301s Geometry type: GEOMETRY 301s Dimension: XY 301s Bounding box: xmin: 0 ymin: 0 xmax: 0 ymax: 1 301s CRS: NA 301s > ll %/% st_sfc(p_) 301s Geometry set for 2 features (with 1 geometry empty) 301s Geometry type: GEOMETRY 301s Dimension: XY 301s Bounding box: xmin: 0 ymin: 0 xmax: 0 ymax: 1 301s CRS: NA 301s > ll == st_sfc(p_) 301s [1] FALSE TRUE 301s > ll != st_sfc(p_) 301s [1] TRUE FALSE 301s > 301s > 301s > str(x) 301s sfc_POINT of length 2; first list element: LINESTRING (0 0, 0 1) 301s POINT (0 1) 301s LINESTRING (0 0, 0 1) 301s GEOMETRYCOLLECTION EMPTY 301s 'XY' num [1:2] -90 35 301s > nc = st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE) 301s > str(nc) 301s Classes 'sf' and 'data.frame': 100 obs. of 15 variables: 301s $ AREA : num 0.114 0.061 0.143 0.07 0.153 0.097 0.062 0.091 0.118 0.124 ... 301s $ PERIMETER: num 1.44 1.23 1.63 2.97 2.21 ... 301s $ CNTY_ : num 1825 1827 1828 1831 1832 ... 301s $ CNTY_ID : num 1825 1827 1828 1831 1832 ... 301s $ NAME : chr "Ashe" "Alleghany" "Surry" "Currituck" ... 301s $ FIPS : chr "37009" "37005" "37171" "37053" ... 301s $ FIPSNO : num 37009 37005 37171 37053 37131 ... 301s $ CRESS_ID : int 5 3 86 27 66 46 15 37 93 85 ... 301s $ BIR74 : num 1091 487 3188 508 1421 ... 301s $ SID74 : num 1 0 5 1 9 7 0 0 4 1 ... 301s $ NWBIR74 : num 10 10 208 123 1066 ... 301s $ BIR79 : num 1364 542 3616 830 1606 ... 301s $ SID79 : num 0 3 6 2 3 5 2 2 2 5 ... 301s $ NWBIR79 : num 19 12 260 145 1197 ... 301s $ geometry :sfc_MULTIPOLYGON of length 100; first list element: List of 1 301s ..$ :List of 1 301s .. ..$ : num [1:27, 1:2] -81.5 -81.5 -81.6 -81.6 -81.7 ... 301s ..- attr(*, "class")= chr [1:3] "XY" "MULTIPOLYGON" "sfg" 301s - attr(*, "sf_column")= chr "geometry" 301s - attr(*, "agr")= Factor w/ 3 levels "constant","aggregate",..: NA NA NA NA NA NA NA NA NA NA ... 301s ..- attr(*, "names")= chr [1:14] "AREA" "PERIMETER" "CNTY_" "CNTY_ID" ... 301s > bb = st_as_sfc(st_bbox(nc)) 301s > format(st_bbox(nc)) 301s [1] "((-84.32385,33.88199),(-75.45698,36.58965))" 301s > 301s > st_agr("constant") 301s [1] constant 301s Levels: constant aggregate identity 301s > st_agr() 301s [1] 301s Levels: constant aggregate identity 301s > x <- st_sf(a = 1:2, b = 3:4, geom = x, agr = c("constant", "aggregate")) 301s > y <- x %>% st_set_agr("constant") 301s > y 301s Simple feature collection with 2 features and 2 fields 301s Attribute-geometry relationships: constant (2) 301s Geometry type: POINT 301s Dimension: XY 301s Bounding box: xmin: -90 ymin: 35 xmax: -80 ymax: 36 301s Geodetic CRS: +proj=longlat +datum=NAD27 301s a b geom 301s 1 1 3 POINT (-90 35) 301s 2 2 4 POINT (-80 36) 301s > 301s > sf1 <- st_sf(a = c("x", "y"), geom = st_sfc(st_point(3:4), st_point(3:4))) 301s > sf1[names(sf1)] 301s Simple feature collection with 2 features and 1 field 301s Geometry type: POINT 301s Dimension: XY 301s Bounding box: xmin: 3 ymin: 4 xmax: 3 ymax: 4 301s CRS: NA 301s a geom 301s 1 x POINT (3 4) 301s 2 y POINT (3 4) 301s > 301s > st_bbox(sf1) 301s xmin ymin xmax ymax 301s 3 4 3 4 301s > bb = st_bbox(nc) 301s > bb 301s xmin ymin xmax ymax 301s -84.32385 33.88199 -75.45698 36.58965 301s > st_crs(bb) 301s Coordinate Reference System: 301s User input: NAD27 301s wkt: 301s GEOGCRS["NAD27", 301s DATUM["North American Datum 1927", 301s ELLIPSOID["Clarke 1866",6378206.4,294.978698213898, 301s LENGTHUNIT["metre",1]]], 301s PRIMEM["Greenwich",0, 301s ANGLEUNIT["degree",0.0174532925199433]], 301s CS[ellipsoidal,2], 301s AXIS["latitude",north, 301s ORDER[1], 301s ANGLEUNIT["degree",0.0174532925199433]], 301s AXIS["longitude",east, 301s ORDER[2], 301s ANGLEUNIT["degree",0.0174532925199433]], 301s ID["EPSG",4267]] 301s > st_bbox(c(xmin = 16.1, xmax = 16.6, ymin = 48.6, ymax = 47.9), crs = st_crs(4326)) 301s xmin ymin xmax ymax 301s 16.1 48.6 16.6 47.9 301s > st_bbox(c(xmin = 16.1, xmax = 16.6, ymin = 48.6, ymax = 47.9), crs = 4326) 301s xmin ymin xmax ymax 301s 16.1 48.6 16.6 47.9 301s > 301s > bb$xrange 301s xmin xmax 301s -84.32385 -75.45698 301s > bb$yrange 301s ymin ymax 301s 33.88199 36.58965 301s > bb$xmin 301s xmin 301s -84.32385 301s > bb$ymin 301s ymin 301s 33.88199 301s > bb$xmax 301s xmax 301s -75.45698 301s > bb$ymax 301s ymax 301s 36.58965 301s > try(bb$foo) 301s > 301s > # merge: 301s > a = data.frame(a = 1:3, b = 5:7) 301s Error in `$.bbox`(bb, foo) : unsupported name 301s > st_geometry(a) = st_sfc(st_point(c(0,0)), st_point(c(1,1)), st_point(c(2,2))) 301s > b = data.frame(x = c("a", "b", "c"), b = c(2,5,6)) 301s > merge(a, b) 301s Simple feature collection with 2 features and 3 fields 301s Geometry type: POINT 301s Dimension: XY 301s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 301s CRS: NA 301s b a x geometry 301s 1 5 1 b POINT (0 0) 301s 2 6 2 c POINT (1 1) 301s > merge(a, b, all = TRUE) 301s Simple feature collection with 4 features and 3 fields (with 1 geometry empty) 301s Geometry type: GEOMETRY 301s Dimension: XY 301s Bounding box: xmin: 0 ymin: 0 xmax: 2 ymax: 2 301s CRS: NA 301s b a x geometry 301s 1 2 NA a GEOMETRYCOLLECTION EMPTY 301s 2 5 1 b POINT (0 0) 301s 3 6 2 c POINT (1 1) 301s 4 7 3 POINT (2 2) 301s > 301s > if (require(dplyr, quietly = TRUE)) { 301s + # joins: 301s + inner_join(a, b) 301s + left_join(a, b) 301s + right_join(a, b) 301s + full_join(a, b) 301s + semi_join(a, b) 301s + anti_join(a, b) 301s + left_join(a, data.frame(b, geometry = 1), by = "b") 301s + } 301s 301s Attaching package: 'dplyr' 301s 301s The following object is masked from 'package:testthat': 301s 301s matches 301s 301s The following objects are masked from 'package:stats': 301s 301s filter, lag 301s 301s The following objects are masked from 'package:base': 301s 301s intersect, setdiff, setequal, union 301s 301s Joining with `by = join_by(b)` 301s Joining with `by = join_by(b)` 301s Joining with `by = join_by(b)` 301s Joining with `by = join_by(b)` 301s Joining with `by = join_by(b)` 301s Joining with `by = join_by(b)` 301s Simple feature collection with 3 features and 4 fields 301s Geometry type: POINT 301s Dimension: XY 301s Bounding box: xmin: 0 ymin: 0 xmax: 2 ymax: 2 301s CRS: NA 301s a b x geometry.y geometry.x 301s 1 1 5 b 1 POINT (0 0) 301s 2 2 6 c 1 POINT (1 1) 301s 3 3 7 NA POINT (2 2) 301s > 301s > # st_joins: 301s > a = st_sf(a = 1:3, 301s + geom = st_sfc(st_point(c(1,1)), st_point(c(2,2)), st_point(c(3,3)))) 301s > b = st_sf(a = 11:14, 301s + geom = st_sfc(st_point(c(10,10)), st_point(c(2,2)), st_point(c(2,2)), st_point(c(3,3)))) 301s > st_join(a, b) 301s Simple feature collection with 4 features and 2 fields 301s Geometry type: POINT 301s Dimension: XY 301s Bounding box: xmin: 1 ymin: 1 xmax: 3 ymax: 3 301s CRS: NA 301s a.x a.y geom 301s 1 1 NA POINT (1 1) 301s 2 2 12 POINT (2 2) 301s 2.1 2 13 POINT (2 2) 301s 3 3 14 POINT (3 3) 301s > st_join(a, b, left = FALSE) 301s Simple feature collection with 3 features and 2 fields 301s Geometry type: POINT 301s Dimension: XY 301s Bounding box: xmin: 2 ymin: 2 xmax: 3 ymax: 3 301s CRS: NA 301s a.x a.y geom 301s 2 2 12 POINT (2 2) 301s 2.1 2 13 POINT (2 2) 301s 3 3 14 POINT (3 3) 301s > # st_join, largest = TRUE: 301s > nc <- st_transform(st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE), 2264) 301s > gr = st_sf( 301s + label = apply(expand.grid(1:10, LETTERS[10:1])[,2:1], 1, paste0, collapse = " "), 301s + geom = st_make_grid(st_as_sfc(st_bbox(nc)))) 301s > gr$col = sf.colors(10, categorical = TRUE, alpha = .3) 301s > # cut, to check, NA's work out: 301s > gr = gr[-(1:30),] 301s > st_join(nc, gr, largest = TRUE) 302s Simple feature collection with 100 features and 16 fields 302s Geometry type: MULTIPOLYGON 302s Dimension: XY 302s Bounding box: xmin: 406265 ymin: 48359.7 xmax: 3052877 ymax: 1044143 302s Projected CRS: NAD83 / North Carolina (ftUS) 302s First 10 features: 302s AREA PERIMETER CNTY_ CNTY_ID NAME FIPS FIPSNO CRESS_ID BIR74 SID74 302s 1 0.114 1.442 1825 1825 Ashe 37009 37009 5 1091 1 302s 2 0.061 1.231 1827 1827 Alleghany 37005 37005 3 487 0 302s 3 0.143 1.630 1828 1828 Surry 37171 37171 86 3188 5 302s 4 0.070 2.968 1831 1831 Currituck 37053 37053 27 508 1 302s 5 0.153 2.206 1832 1832 Northampton 37131 37131 66 1421 9 302s 6 0.097 1.670 1833 1833 Hertford 37091 37091 46 1452 7 302s 7 0.062 1.547 1834 1834 Camden 37029 37029 15 286 0 302s 8 0.091 1.284 1835 1835 Gates 37073 37073 37 420 0 302s 9 0.118 1.421 1836 1836 Warren 37185 37185 93 968 4 302s 10 0.124 1.428 1837 1837 Stokes 37169 37169 85 1612 1 302s NWBIR74 BIR79 SID79 NWBIR79 label col geometry 302s 1 10 1364 0 19 A 4 #fb80724d MULTIPOLYGON (((1270813 913... 302s 2 10 542 3 12 A 4 #fb80724d MULTIPOLYGON (((1340553 959... 302s 3 208 3616 6 260 A 5 #80b1d34d MULTIPOLYGON (((1570586 910... 302s 4 123 830 2 145 A 10 #bc80bd4d MULTIPOLYGON (((2881206 948... 302s 5 1066 1606 3 1197 A 8 #fccde54d MULTIPOLYGON (((2525700 911... 302s 6 954 1838 5 1237 A 9 #d9d9d94d MULTIPOLYGON (((2665112 911... 302s 7 115 350 2 139 A 10 #bc80bd4d MULTIPOLYGON (((2881206 948... 302s 8 254 594 2 371 A 9 #d9d9d94d MULTIPOLYGON (((2717988 951... 302s 9 748 1190 2 844 A 8 #fccde54d MULTIPOLYGON (((2203888 914... 302s 10 160 2038 5 176 A 5 #80b1d34d MULTIPOLYGON (((1697618 911... 302s > 302s > # rbind: 302s > x = st_sf(a = 1:2, geom = st_sfc(list(st_point(0:1), st_point(0:1)), crs = 4326)) 302s Warning message: 302s attribute variables are assumed to be spatially constant throughout all geometries 302s > rbind(x, x, x) 302s Simple feature collection with 6 features and 1 field 302s Geometry type: POINT 302s Dimension: XY 302s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 302s Geodetic CRS: WGS 84 302s a geom 302s 1 1 POINT (0 1) 302s 2 2 POINT (0 1) 302s 3 1 POINT (0 1) 302s 4 2 POINT (0 1) 302s 5 1 POINT (0 1) 302s 6 2 POINT (0 1) 302s > nc2 = rbind(nc[1:50, ], nc[51:100, ]) 302s > all.equal(nc, nc2) 302s [1] TRUE 302s > 302s > # st_sample: 302s > suppressWarnings(RNGversion("3.5.3")) 302s > set.seed(131) 302s > options(digits=6) 302s > x = st_sfc(st_polygon(list(rbind(c(0,1),c(90,1),c(90,90),c(0,90),c(0,1)))), crs = st_crs(4326)) 302s > (p <- st_sample(x, 10)) 302s Geometry set for 10 features 302s Geometry type: POINT 302s Dimension: XY 302s Bounding box: xmin: 11.2448 ymin: 3.16385 xmax: 82.3451 ymax: 60.1703 302s Geodetic CRS: WGS 84 302s First 5 geometries: 302s POINT (18.5793 25.2416) 302s POINT (11.2448 20.8596) 302s POINT (26.3946 60.1703) 302s > p <- st_sample(x[[1]], 10) # sfg method 302s POINT (33.8202 19.146) 302s POINT (76.1712 32.1029) 302s > x = st_sfc(st_polygon(list(rbind(c(0,0),c(90,0),c(90,90),c(0,90),c(0,0))))) # NOT long/lat: 302s > p <- st_sample(x, 10) 302s > x = st_sfc(st_polygon(list(rbind(c(-180,-90),c(180,-90),c(180,90),c(-180,90),c(-180,-90)))), 302s + crs=st_crs(4326)) 302s > #FIXME: 302s > # if (sf_extSoftVersion()[["proj.4"]] >= "4.9.0") # lwgeom breaks on this 302s > # (p <- st_sample(x, 10)) 302s > pt = st_multipoint(matrix(1:20,,2)) 302s > st_sample(p, 3) 302s Geometry set for 1 feature 302s Geometry type: MULTIPOINT 302s Dimension: XY 302s Bounding box: xmin: 41.0557 ymin: 27.8024 xmax: 80.9558 ymax: 65.5424 302s CRS: NA 302s > MULTIPOINT ((57.2118 52.329), (80.9558 65.5424)... 302s try(st_sample(p, 3.3)) 302s Geometry set for 1 feature 302s Geometry type: MULTIPOINT 302s Dimension: XY 302s Bounding box: xmin: 19.3415 ymin: 9.17624 xmax: 80.9558 ymax: 65.5424 302s CRS: NA 302s > MULTIPOINT ((19.3415 18.6622), (57.1389 9.17624... 302s Warning message: 302s In st_sample.sfc(p, 3.3) : size is not an integer 302s ls = st_sfc(st_linestring(rbind(c(0,0),c(0,1))), 302s + st_linestring(rbind(c(0,0),c(.1,0))), 302s + st_linestring(rbind(c(0,1),c(.1,1))), 302s + st_linestring(rbind(c(2,2),c(2,2.00001)))) 302s > st_sample(ls, 80) 302s Geometry set for 4 features (with 1 geometry empty) 302s Geometry type: MULTIPOINT 302s Dimension: XY 302s Bounding box: xmin: 0 ymin: 0 xmax: 0.0914728 ymax: 1 302s CRS: NA 302s MULTIPOINT ((0 0.137868), (0 0.777635), (0 0.40... 302s MULTIPOINT ((0.0914728 0), (0.073852 0), (0.003... 302s MULTIPOINT ((0.0488222 1), (0.0716508 1), (0.08... 302s MULTIPOINT EMPTY 302s > st_sample(nc[1:2,], size = c(10,20)) 302s Geometry set for 30 features 302s Geometry type: POINT 302s Dimension: XY 302s Bounding box: xmin: 1216510 ymin: 935852 xmax: 1428880 ymax: 1031490 302s Projected CRS: NAD83 / North Carolina (ftUS) 302s First 5 geometries: 302s POINT (1264558 935852) 302s POINT (1256623 949369) 302s POINT (1222665 972624) 302s > # try with LINES, LongLat, should generate a warning: 302s > nc[1:2,] %>% st_transform(4326) %>% st_cast("MULTILINESTRING") %>% st_sample(size = c(10,20)) 302s POINT (1333528 968263) 302s POINT (1310837 958630) 302s although coordinates are longitude/latitude, st_sample assumes that they are 302s planar 302s although coordinates are longitude/latitude, st_sample assumes that they are 302s planar 302s Geometry set for 2 features 302s Geometry type: MULTIPOINT 302s Dimension: XY 302s Bounding box: xmin: -81.6893 ymin: 36.2491 xmax: -80.914 ymax: 36.5726 302s Geodetic CRS: WGS 84 302s MULTIPOINT ((-81.2401 36.3717), (-81.6893 36.36... 302s > st_sample(ls, 80, type = "regular") 302s MULTIPOINT ((-81.2629 36.4076), (-81.1375 36.56... 302s Geometry set for 4 features (with 1 geometry empty) 302s Geometry type: MULTIPOINT 302s Dimension: XY 302s Bounding box: xmin: 0 ymin: 0 xmax: 0.095454 ymax: 1 302s CRS: NA 302s MULTIPOINT ((0 0.0104441), (0 0.0254442), (0 0.... 302s MULTIPOINT ((0.000452334 0), (0.0154525 0), (0.... 302s MULTIPOINT ((0.00545321 1), (0.0204533 1), (0.0... 302s > p_sample = lapply(1:10, function(i) st_sample(nc[i, ], 100, exact = FALSE)) 302s MULTIPOINT EMPTY 302s > lengths(p_sample) 302s [1] 104 106 110 96 98 120 87 105 104 99 302s > p_sample_exact = lapply(1:10, function(i) st_sample(nc[i, ], 100, exact = TRUE)) 303s > lengths(p_sample_exact) 303s New names: 303s * `AREA` -> `AREA...1` 303s * `PERIMETER` -> `PERIMETER...2` 303s * `CNTY_` -> `CNTY_...3` 303s * `AREA` -> `AREA...16` 303s * `PERIMETER` -> `PERIMETER...17` 303s * `CNTY_` -> `CNTY_...18` 303s POINT EMPTY 303s POINT (0 1) 303s POINT EMPTY 303s POINT (2 3) 303s POINT EMPTY 303s [1] 100 100 100 100 100 100 100 100 100 100 303s > #plot(nc$geometry[1]) 303s > #plot(p_sample[[1]], add = TRUE) 303s > #plot(p_sample_exact[[1]], add = TRUE) 303s > 303s > if (require(dplyr, quietly = TRUE)) { 303s + #class(st_bind_cols(nc, as.data.frame(nc)[1:3])) 303s + print(class(dplyr::bind_cols(nc, as.data.frame(nc)[1:3]))) 303s + } 303s [1] "sf" "data.frame" 303s > class(rbind(nc, nc)) 303s [1] "sf" "data.frame" 303s > class(cbind(nc, nc)) 303s [1] "sf" "data.frame" 303s > 303s > x = st_sfc(st_point(0:1), st_point(2:3)) 303s > x[c(NA,1,NA,2,NA)] 303s Geometry set for 5 features (with 3 geometries empty) 303s Geometry type: POINT 303s Dimension: XY 303s Bounding box: xmin: 0 ymin: 1 xmax: 2 ymax: 3 303s CRS: NA 303s > 303s > # jitter 303s > pts = st_centroid(st_geometry(nc)) 303s > plot(pts) 303s > plot(st_jitter(pts, .05), add = TRUE, col = 'red') 303s > plot(st_geometry(nc)) 303s > plot(st_jitter(st_geometry(nc), factor = .01), add = TRUE, col = '#ff8888') 303s > st_jitter(st_sfc(st_point(0:1)), amount = .1) 303s Geometry set for 1 feature 303s Geometry type: POINT 303s Dimension: XY 303s Bounding box: xmin: -0.0500922 ymin: 0.992953 xmax: -0.0500922 ymax: 0.992953 303s CRS: NA 303s > 303s > # st_bbox: 303s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(raster, quietly = TRUE)) { 303s + demo(meuse, ask = FALSE, echo = FALSE) 303s + suppressWarnings(st_bbox(meuse)) 303s + crs = suppressWarnings(st_crs(meuse)) 303s + suppressWarnings(st_bbox(raster(meuse.grid))) 303s + st_bbox(extent(raster())) 303s POINT (-0.0500922 0.992953) 303s + } 304s code for methods in class "Rcpp_SpatCategories" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 304s code for methods in class "Rcpp_SpatCategories" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 304s code for methods in class "Rcpp_SpatDataFrame" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 304s code for methods in class "Rcpp_SpatDataFrame" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 304s code for methods in class "Rcpp_SpatExtent" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 305s code for methods in class "Rcpp_SpatExtent" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 305s code for methods in class "Rcpp_SpatFactor" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 305s code for methods in class "Rcpp_SpatFactor" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 305s code for methods in class "Rcpp_SpatMessages" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 305s code for methods in class "Rcpp_SpatMessages" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 305s code for methods in class "Rcpp_SpatOptions" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 305s code for methods in class "Rcpp_SpatOptions" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 305s code for methods in class "Rcpp_SpatRaster" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 305s code for methods in class "Rcpp_SpatRaster" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 305s code for methods in class "Rcpp_SpatRasterCollection" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 305s code for methods in class "Rcpp_SpatRasterCollection" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 305s code for methods in class "Rcpp_SpatRasterStack" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 305s code for methods in class "Rcpp_SpatRasterStack" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 305s code for methods in class "Rcpp_SpatSRS" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 305s code for methods in class "Rcpp_SpatSRS" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 305s code for methods in class "Rcpp_SpatTime_v" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 305s code for methods in class "Rcpp_SpatTime_v" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 305s code for methods in class "Rcpp_SpatVector" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 305s code for methods in class "Rcpp_SpatVector" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 305s code for methods in class "Rcpp_SpatVectorCollection" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 305s code for methods in class "Rcpp_SpatVectorCollection" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 305s code for methods in class "Rcpp_SpatVectorProxy" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 305s code for methods in class "Rcpp_SpatVectorProxy" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 307s code for methods in class "Rcpp_SpExtent" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 307s code for methods in class "Rcpp_SpExtent" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 307s code for methods in class "Rcpp_SpPoly" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 307s code for methods in class "Rcpp_SpPoly" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 307s code for methods in class "Rcpp_SpPolyPart" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 307s code for methods in class "Rcpp_SpPolyPart" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 307s code for methods in class "Rcpp_SpPolygons" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 307s code for methods in class "Rcpp_SpPolygons" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 307s 307s Attaching package: 'raster' 307s 307s The following object is masked from 'package:dplyr': 307s 307s select 307s 307s xmin ymin xmax ymax 307s -180 -90 180 90 307s > 307s > # st_to_s2 307s > if (FALSE) { # stops working with GDAL 2.3.0 / PROJ 5.0.1: 307s + x = sf:::st_to_s2(nc) 307s + x1 = st_geometry(x) 307s + cc = st_coordinates(x1) 307s + summary(sqrt(cc[,1]^2+cc[,2]^2+cc[,3]^2)) 307s + } 307s > 307s > # check_ring_dir 307s > m = rbind(c(0,0), c(0,1), c(1,1), c(1,0), c(0,0)) 307s > mi = m[nrow(m):1,] 307s > pol = st_polygon(list(m * 10, m + .5, mi + 1.5, mi + 3.5, m + 5, mi + 6.5)) 307s > st_sfc(pol) 307s Geometry set for 1 feature 307s Geometry type: POLYGON 307s Dimension: XY 307s Bounding box: xmin: 0 ymin: 0 xmax: 10 ymax: 10 307s CRS: NA 307s > x = st_sfc(pol, check_ring_dir=TRUE) 307s > y = st_sf(a = 1, geom = st_sfc(pol), check_ring_dir=TRUE) 307s POLYGON ((0 0, 0 10, 10 10, 10 0, 0 0), (0.5 0.... 307s > str(x) 307s sfc_POLYGON of length 1; first list element: List of 6 307s $ : num [1:5, 1:2] 0 10 10 0 0 0 0 10 10 0 307s $ : num [1:5, 1:2] 0.5 0.5 1.5 1.5 0.5 0.5 1.5 1.5 0.5 0.5 307s $ : num [1:5, 1:2] 1.5 1.5 2.5 2.5 1.5 1.5 2.5 2.5 1.5 1.5 307s $ : num [1:5, 1:2] 3.5 3.5 4.5 4.5 3.5 3.5 4.5 4.5 3.5 3.5 307s $ : num [1:5, 1:2] 5 5 6 6 5 5 6 6 5 5 307s $ : num [1:5, 1:2] 6.5 6.5 7.5 7.5 6.5 6.5 7.5 7.5 6.5 6.5 307s - attr(*, "class")= chr [1:3] "XY" "POLYGON" "sfg" 307s > x = st_sfc(st_polygon(), st_polygon(), check_ring_dir=TRUE) 307s > str(x) 307s sfc_POLYGON of length 2; first list element: list() 307s - attr(*, "class")= chr [1:3] "XY" "POLYGON" "sfg" 307s > # empty ring/zero area: 307s > x = st_sfc(st_polygon(list(m[c(1,3,1),])), check_ring_dir=TRUE) 307s > 307s > mp = st_multipolygon(list(pol, pol)) 307s > try(x <- st_sfc(mp, st_polygon(), check_ring_dir=TRUE)) 307s > x <- st_sfc(mp, pol) %>% st_cast("MULTIPOLYGON") %>% st_sfc(check_ring_dir=TRUE) 307s > x 307s Error in check_ring_dir(lst) : 307s check_ring_dir: not supported for class sfc_GEOMETRY 307s Geometry set for 2 features 307s Geometry type: MULTIPOLYGON 307s Dimension: XY 307s Bounding box: xmin: 0 ymin: 0 xmax: 10 ymax: 10 307s CRS: NA 307s > str(x) 307s sfc_MULTIPOLYGON of length 2; first list element: List of 2 307s $ :List of 6 307s ..$ : num [1:5, 1:2] 0 10 10 0 0 0 0 10 10 0 307s ..$ : num [1:5, 1:2] 0.5 0.5 1.5 1.5 0.5 0.5 1.5 1.5 0.5 0.5 307s ..$ : num [1:5, 1:2] 1.5 1.5 2.5 2.5 1.5 1.5 2.5 2.5 1.5 1.5 307s ..$ : num [1:5, 1:2] 3.5 3.5 4.5 4.5 3.5 3.5 4.5 4.5 3.5 3.5 307s ..$ : num [1:5, 1:2] 5 5 6 6 5 5 6 6 5 5 307s ..$ : num [1:5, 1:2] 6.5 6.5 7.5 7.5 6.5 6.5 7.5 7.5 6.5 6.5 307s ..- attr(*, "class")= chr [1:3] "XY" "POLYGON" "sfg" 307s $ :List of 6 307s ..$ : num [1:5, 1:2] 0 10 10 0 0 0 0 10 10 0 307s ..$ : num [1:5, 1:2] 0.5 0.5 1.5 1.5 0.5 0.5 1.5 1.5 0.5 0.5 307s ..$ : num [1:5, 1:2] 1.5 1.5 2.5 2.5 1.5 1.5 2.5 2.5 1.5 1.5 307s ..$ : num [1:5, 1:2] 3.5 3.5 4.5 4.5 3.5 3.5 4.5 4.5 3.5 3.5 307s ..$ : num [1:5, 1:2] 5 5 6 6 5 5 6 6 5 5 307s ..$ : num [1:5, 1:2] 6.5 6.5 7.5 7.5 6.5 6.5 7.5 7.5 6.5 6.5 307s ..- attr(*, "class")= chr [1:3] "XY" "POLYGON" "sfg" 307s - attr(*, "class")= chr [1:3] "XY" "MULTIPOLYGON" "sfg" 307s > 307s > x = st_sfc(st_linestring(rbind(c(-179,0),c(179,0))), crs = 4326) 307s > st_wrap_dateline(st_sf(a = 1, geometry = x)) 307s Simple feature collection with 1 feature and 1 field 307s Geometry type: MULTILINESTRING 307s Dimension: XY 307s Bounding box: xmin: -180 ymin: 0 xmax: 180 ymax: 0 307s Geodetic CRS: WGS 84 307s a geometry 307s 1 1 MULTILINESTRING ((-179 0, -... 307s > st_wrap_dateline(x) 307s Geometry set for 1 feature 307s Geometry type: MULTILINESTRING 307s Dimension: XY 307s Bounding box: xmin: -180 ymin: 0 xmax: 180 ymax: 0 307s Geodetic CRS: WGS 84 307s > st_wrap_dateline(x[[1]]) 307s > 307s > geo <- c("{\"geodesic\":true,\"type\":\"Point\",\"coordinates\":[-118.68152563269095,36.43764870908927]}", 307s + "{\"geodesic\":true,\"type\":\"Point\",\"coordinates\":[-118.67408758213843,36.43366018922779]}", 307s + "{\"geodesic\":true,\"type\":\"Point\",\"coordinates\":[-118.67708346361097,36.44208638659282]}", 307s + "{\"geodesic\":true,\"type\":\"Point\",\"coordinates\":[-118.67886661944996,36.44110273135671]}", 307s + "{\"geodesic\":true,\"type\":\"Point\",\"coordinates\":[-118.68089232041565,36.44173155205561]}") 307s > st_as_sfc(geo, GeoJSON = TRUE) 307s MULTIPOLYGON (((0 0, 10 0, 10 10, 0 10, 0 0), (... 307s MULTIPOLYGON (((0 0, 10 0, 10 10, 0 10, 0 0), (... 307s MULTILINESTRING ((-179 0, -180 0), (180 0, 179 0)) 307s MULTILINESTRING ((-179 0, -180 0), (180 0, 179 0)) 307s Geometry set for 5 features 307s Geometry type: POINT 307s Dimension: XY 307s Bounding box: xmin: -118.682 ymin: 36.4337 xmax: -118.674 ymax: 36.4421 307s Geodetic CRS: WGS 84 307s POINT (-118.682 36.4376) 307s POINT (-118.674 36.4337) 307s POINT (-118.677 36.4421) 307s > st_as_sfc(geo, GeoJSON = TRUE, crs = 4326) 307s POINT (-118.679 36.4411) 307s POINT (-118.681 36.4417) 307s Geometry set for 5 features 307s Geometry type: POINT 307s Dimension: XY 307s Bounding box: xmin: -118.682 ymin: 36.4337 xmax: -118.674 ymax: 36.4421 307s Geodetic CRS: WGS 84 307s POINT (-118.682 36.4376) 307s POINT (-118.674 36.4337) 307s POINT (-118.677 36.4421) 307s POINT (-118.679 36.4411) 307s POINT (-118.681 36.4417) 307s POINT (0 1) 307s POINT (0 1) 307s POLYGON ((0.983044 0.0650651, 0.959619 0.040380... 307s POLYGON ((0.983044 0.0650651, 0.959619 0.040380... 307s Warning message: 307s attribute variables are assumed to be spatially constant throughout all geometries 307s Warning message: 307s attribute variables are assumed to be spatially constant throughout all geometries 307s > 307s > st_as_sfc(st_as_binary(st_sfc(st_point(0:1)))[[1]], crs = 4326) 307s Geometry set for 1 feature 307s Geometry type: POINT 307s Dimension: XY 307s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 307s Geodetic CRS: WGS 84 307s > 307s > x = nc 307s > x$geom = NULL 307s > class(x) 307s [1] "sf" "data.frame" 307s > 307s > st_as_sfc(list(st_point(0:1)), crs = 4326) 307s Geometry set for 1 feature 307s Geometry type: POINT 307s Dimension: XY 307s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 307s Geodetic CRS: WGS 84 307s > 307s > # crop: 307s > box = c(xmin = 0, ymin = 0, xmax = 1, ymax = 1) 307s > 307s > pol = st_sfc(st_buffer(st_point(c(.5, .5)), .65)) 307s > pol_sf = st_sf(a=1, geom=pol) 307s > 307s > st_crop(pol, box) 307s Geometry set for 1 feature 307s Geometry type: POLYGON 307s Dimension: XY 307s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 307s CRS: NA 307s > st_crop(pol, st_bbox(box)) 307s Geometry set for 1 feature 307s Geometry type: POLYGON 307s Dimension: XY 307s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 307s CRS: NA 307s > st_crop(pol_sf, box) 307s Simple feature collection with 1 feature and 1 field 307s Geometry type: POLYGON 307s Dimension: XY 307s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 307s CRS: NA 307s a geom 307s 1 1 POLYGON ((0.983044 0.065065... 307s > st_crop(pol_sf, st_bbox(box)) 307s Simple feature collection with 1 feature and 1 field 307s Geometry type: POLYGON 307s Dimension: XY 307s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 307s CRS: NA 307s a geom 307s 1 1 POLYGON ((0.983044 0.065065... 307s > 307s > # new sample methods: 307s > x = st_sfc(st_polygon(list(rbind(c(0,0),c(90,0),c(90,90),c(0,90),c(0,0))))) # NOT long/lat: 307s > p <- st_sample(x, 10, type = "regular") 307s > p <- st_sample(x, 10, type = "hexagonal") 307s > 307s > all.equal(st_drop_geometry(pol_sf), st_set_geometry(pol_sf, NULL)) 307s [1] TRUE 307s > 307s > # https://github.com/r-spatial/sf/issues/1024 307s > shape1 <-st_sfc(st_polygon(list(rbind(c(0,0), c(1,0), c(3,2), c(2,4), c(1,4), c(0,0))))) 307s > shape2 <- st_sfc(st_polygon()) 307s > shape3 <- st_sfc(st_polygon()) 307s > 307s > shape4 = st_intersection(shape2, shape3) # has zero features 307s > 307s > st_difference(shape1, shape4) 307s Geometry set for 1 feature 307s Geometry type: POLYGON 307s Dimension: XY 307s Bounding box: xmin: 0 ymin: 0 xmax: 3 ymax: 4 307s CRS: NA 307s > st_difference(shape4, shape1) 307s Geometry set for 0 features 307s Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA 307s CRS: NA 307s > st_sym_difference(shape1, shape4) 307s Geometry set for 1 feature 307s Geometry type: POLYGON 307s Dimension: XY 307s Bounding box: xmin: 0 ymin: 0 xmax: 3 ymax: 4 307s CRS: NA 307s > POLYGON ((0 0, 1 0, 3 2, 2 4, 1 4, 0 0)) 307s POLYGON ((0 0, 1 0, 3 2, 2 4, 1 4, 0 0)) 307s st_union(shape1, shape4) 307s Geometry set for 1 feature 307s Geometry type: POLYGON 307s Dimension: XY 307s Bounding box: xmin: 0 ymin: 0 xmax: 3 ymax: 4 307s CRS: NA 307s > st_union(shape4, shape1) 307s POLYGON ((0 0, 1 0, 3 2, 2 4, 1 4, 0 0)) 307s Geometry set for 1 feature 307s Geometry type: POLYGON 307s Dimension: XY 307s Bounding box: xmin: 0 ymin: 0 xmax: 3 ymax: 4 307s CRS: NA 307s > 307s > # transform empty: 307s > tr = st_sf(geom=st_sfc()) %>% st_set_crs(3587) %>% st_transform(4326) 307s > 307s > # NA values are converted to empty; #1114: 307s > x <- data.frame(name=LETTERS) 307s > y <- data.frame(name=LETTERS[1:13], letters[14:26]) 307s POLYGON ((0 0, 1 0, 3 2, 2 4, 1 4, 0 0)) 307s > y$geometry <- st_sfc(st_point(c(0,0))) 307s > y <- st_sf(y) 307s > out = merge(x, y, all.x=TRUE) 307s > class(out) 307s [1] "data.frame" 307s > 307s > st_as_sf(st_sfc(st_point(0:1))) 307s Simple feature collection with 1 feature and 0 fields 307s Geometry type: POINT 307s Dimension: XY 307s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 307s CRS: NA 307s x 307s 1 POINT (0 1) 307s > 307s > # st_exterior_ring(): 307s > outer = matrix(c(0,0,10,0,10,10,0,10,0,0),ncol=2, byrow=TRUE) 307s > hole1 = matrix(c(1,1,1,2,2,2,2,1,1,1),ncol=2, byrow=TRUE) 307s > hole2 = matrix(c(5,5,5,6,6,6,6,5,5,5),ncol=2, byrow=TRUE) 307s > pts = list(outer, hole1, hole2) 307s > pl1 = st_polygon(pts) 307s > mpl1 = st_multipolygon(list(pl1,pl1+20)) 307s > 307s > spl1 = st_as_sfc(list(pl1),crs=4326) 307s > smpl1 = st_as_sfc(list(mpl1),crs=4326) 307s > 307s > st_exterior_ring(spl1[[1]]) 307s > st_exterior_ring(spl1) 307s Geometry set for 1 feature 307s Geometry type: POLYGON 307s Dimension: XY 307s Bounding box: xmin: 0 ymin: 0 xmax: 10 ymax: 10 307s Geodetic CRS: WGS 84 307s > POLYGON ((0 0, 10 0, 10 10, 0 10, 0 0)) 307s st_exterior_ring(st_sf(a = 1, geom = spl1)) 307s Simple feature collection with 1 feature and 1 field 307s Geometry type: POLYGON 307s Dimension: XY 307s Bounding box: xmin: 0 ymin: 0 xmax: 10 ymax: 10 307s Geodetic CRS: WGS 84 307s a geom 307s 1 1 POLYGON ((0 0, 10 0, 10 10,... 307s > st_exterior_ring(smpl1[[1]]) 307s > st_exterior_ring(st_sfc(smpl1)) 307s Geometry set for 1 feature 307s Geometry type: MULTIPOLYGON 307s Dimension: XY 307s Bounding box: xmin: 0 ymin: 0 xmax: 30 ymax: 30 307s Geodetic CRS: WGS 84 307s > st_exterior_ring(st_sf(a = 1, geom = st_sfc(smpl1))) 307s Simple feature collection with 1 feature and 1 field 307s Geometry type: MULTIPOLYGON 307s Dimension: XY 307s Bounding box: xmin: 0 ymin: 0 xmax: 30 ymax: 30 307s Geodetic CRS: WGS 84 307s a geom 307s 1 1 MULTIPOLYGON (((0 0, 10 0, ... 307s > 307s > '{"type":"Polygon","coordinates":[[]]}' |> read_sf() |> st_is_empty() 307s [1] TRUE 307s > # '{"type":"Polygon","coordinates":[]}' |> read_sf() |> st_is_empty() # breaks on GDAL < 3.9 or so 307s > '{"type":"MultiPolygon","coordinates":[[[]]]}' |> read_sf() |> st_is_empty() 307s [1] TRUE 307s > '{"type":"MultiPolygon","coordinates":[[]]}' |> read_sf() |> st_is_empty() 307s [1] TRUE 307s > 307s POLYGON ((0 0, 10 0, 10 10, 0 10, 0 0)) 307s MULTIPOLYGON (((0 0, 10 0, 10 10, 0 10, 0 0)), ((20 20, 30 20, 30 30, 20 30, 20 20))) 307s MULTIPOLYGON (((0 0, 10 0, 10 10, 0 10, 0 0)), ... 308s END TEST sfc.R with result 0 308s BEGIN TEST sfg.R 308s 308s R version 4.4.3 (2025-02-28) -- "Trophy Case" 308s Copyright (C) 2025 The R Foundation for Statistical Computing 308s Platform: x86_64-pc-linux-gnu 308s 308s R is free software and comes with ABSOLUTELY NO WARRANTY. 308s You are welcome to redistribute it under certain conditions. 308s Type 'license()' or 'licence()' for distribution details. 308s 308s R is a collaborative project with many contributors. 308s Type 'contributors()' for more information and 308s 'citation()' on how to cite R or R packages in publications. 308s 308s Type 'demo()' for some demos, 'help()' for on-line help, or 308s 'help.start()' for an HTML browser interface to help. 308s Type 'q()' to quit R. 308s 308s > suppressPackageStartupMessages(library(sf)) 308s > c(st_point(1:2), st_point(5:6)) 308s > c(st_point(1:2), st_multipoint(matrix(5:8,2))) 308s MULTIPOINT ((1 2), (5 6)) 308s > c(st_multipoint(matrix(1:4,2)), st_multipoint(matrix(5:8,2))) 308s MULTIPOINT ((1 2), (5 7), (6 8)) 308s > c(st_linestring(matrix(1:6,3)), st_linestring(matrix(11:16,3))) 308s MULTIPOINT ((1 3), (2 4), (5 7), (6 8)) 308s MULTILINESTRING ((1 4, 2 5, 3 6), (11 14, 12 15, 13 16)) 308s > c(st_linestring(matrix(1:6,3)), st_multilinestring(list(matrix(11:16,3)))) 308s > MULTILINESTRING ((11 14, 12 15, 13 16), (1 4, 2 5, 3 6)) 308s MULTILINESTRING ((1 4, 2 5, 3 6), (11 14, 12 15, 13 16)) 308s c(st_multilinestring(list(matrix(1:6,3))), st_multilinestring(list(matrix(11:16,3)))) 308s > pl = list(rbind(c(0,0), c(1,0), c(1,1), c(0,1), c(0,0))) 308s > c(st_polygon(pl), st_polygon(pl)) 308s MULTIPOLYGON (((0 0, 1 0, 1 1, 0 1, 0 0)), ((0 0, 1 0, 1 1, 0 1, 0 0))) 308s > c(st_polygon(pl), st_multipolygon(list(pl))) 308s > c(st_linestring(matrix(1:6,3)), st_point(1:2)) 308s MULTIPOLYGON (((0 0, 1 0, 1 1, 0 1, 0 0)), ((0 0, 1 0, 1 1, 0 1, 0 0))) 308s > c(st_geometrycollection(list(st_point(1:2), st_linestring(matrix(1:6,3)))), 308s + st_geometrycollection(list(st_multilinestring(list(matrix(11:16,3)))))) 308s GEOMETRYCOLLECTION (LINESTRING (1 4, 2 5, 3 6), POINT (1 2)) 308s > c(st_geometrycollection(list(st_point(1:2), st_linestring(matrix(1:6,3)))), 308s + st_multilinestring(list(matrix(11:16,3))), st_point(5:6), 308s + st_geometrycollection(list(st_point(10:11)))) 308s GEOMETRYCOLLECTION (POINT (1 2), LINESTRING (1 4, 2 5, 3 6), MULTILINESTRING ((11 14, 12 15, 13 16))) 308s GEOMETRYCOLLECTION (MULTILINESTRING ((11 14, 12 15, 13 16)), POINT (5 6), POINT (1 2), LINESTRING (1 4, 2 5, 3 6), POINT (10 11)) 308s > head(st_point(0:1), 2) 308s POINT (0 1) 308s > 308s > # Ops.sfg: 308s > ls = st_linestring(rbind(c(0,0),c(0,1))) 308s > pt = st_point(1:0) 308s > ls | pt 308s > ls / pt 308s > ls & pt 308s > ls %/% pt 308s > # arith: 308s > ls + pt 308s > ls - pt 308s > ls * pt 308s > ls / pt 308s > # unary: 308s > +pt 308s > -pt 308s > try(!pt) 308s > 308s END TEST sfg.R with result 0 308s BEGIN TEST spatstat.R 308s GEOMETRYCOLLECTION (LINESTRING (0 0, 0 1), POINT (1 0)) 308s LINESTRING (0 0, 0 1) 308s GEOMETRYCOLLECTION EMPTY 308s GEOMETRYCOLLECTION (LINESTRING (0 0, 0 1), POINT (1 0)) 308s LINESTRING (1 0, 1 1) 308s LINESTRING (-1 0, -1 1) 308s LINESTRING (0 0, 0 0) 308s LINESTRING (0 0, 0 1) 308s POINT (1 0) 308s POINT (-1 0) 308s Error in Ops.sfg(pt) : unary ! not defined for "sfg" objects 308s 308s R version 4.4.3 (2025-02-28) -- "Trophy Case" 308s Copyright (C) 2025 The R Foundation for Statistical Computing 308s Platform: x86_64-pc-linux-gnu 308s 308s R is free software and comes with ABSOLUTELY NO WARRANTY. 308s You are welcome to redistribute it under certain conditions. 308s Type 'license()' or 'licence()' for distribution details. 308s 308s R is a collaborative project with many contributors. 308s Type 'contributors()' for more information and 308s 'citation()' on how to cite R or R packages in publications. 308s 308s Type 'demo()' for some demos, 'help()' for on-line help, or 308s 'help.start()' for an HTML browser interface to help. 308s Type 'q()' to quit R. 308s 308s > suppressPackageStartupMessages(library(sf)) 309s > ## IGNORE_RDIFF_BEGIN 309s > if (require(spatstat.random, quietly = TRUE)) { 309s + 309s + data(chicago) 309s + st_as_sf(chicago) 309s + # ppp: 309s + g = gorillas 309s + st_as_sf(g) 309s + marks(g) = NULL 309s + st_as_sf(g) 309s + 309s + # multipolygon: https://github.com/r-spatial/sf/issues/1161 309s + window = read_sf(system.file("shape/nc.shp", package = "sf")) %>% 309s + st_transform(32119) 309s + 309s + win = spatstat.geom::as.owin(window) 309s + 309s + set.seed(1331) 309s + pp2a = runifpoint(n = 50, win = win) 309s + print(st_as_sf(pp2a)) 309s + 309s + # st_sample going the spatstat way 309s + x <- sf::st_sfc(sf::st_polygon(list(rbind(c(0, 0), c(10, 0), c(10, 10), c(0, 0))))) 309s + try(pts <- st_sample(x, type = "thomas")) 309s + try(pts <- st_sample(x, kappa = 1, mu = 10, type = "Thomas")) 309s + # points expected 309s + set.seed(1331) 309s + pts <- st_sample(x, kappa = 1, mu = 10, scale = 0.1, type = "Thomas") 309s + #plot(x) 309s + #plot(pts, add = TRUE) 309s + pts 309s + 309s + # see https://github.com/r-spatial/sf/issues/1233 309s + # png("/tmp/spa%03d.png") 309s + 309s + p1 = st_point(0:1) 309s + p2 = st_point(1:2) 309s + p3 = st_point(c(-1,2)) 309s + p = st_sfc(p1, p2, p3) 309s + as.ppp(p) 309s + try(as.ppp(st_set_crs(p, 4326))) 309s + 309s + sf = st_sf(geom = p) 309s + try(as.ppp(sf)) 309s + sf = st_sf(a = 1:3, geom = p) 309s + as.ppp(sf) 309s + sf = st_sf(a = 1:3, b=3:1, geom = p) 309s + as.ppp(sf) # warns 309s + 309s + w = st_as_sfc(st_bbox(st_sfc(p1, p2))) 309s + sf = st_sf(a = 1:3, geom = p) 309s + (p0 = rbind(st_sf(a = 0, geom = w), sf)) 309s + suppressWarnings(try(as.ppp(p0))) # errors: one point outside window 309s + 309s + w = st_as_sfc(st_bbox(p)) 309s + sf = st_sf(a = 1:3, geom = p) 309s + (p0 = rbind(st_sf(a = 0, geom = w), sf)) 309s + as.ppp(p0) 309s + 309s + # as.owin.sf, as.owin.sfc_* 309s + nc = st_read(system.file("gpkg/nc.gpkg", package="sf"), check_ring_dir = TRUE, quiet = TRUE) 309s + try(as.owin(nc)) # should be projected 309s + nc = st_transform(nc, 32119) 309s + plot(as.owin(nc), col = 'grey') 309s + plot(as.owin(st_geometry(nc)), col = 'grey') 309s + 309s + sq = rbind(c(-1,-1), c(1, -1), c(1,1), c(-1,1), c(-1,-1)) 309s + pol = st_polygon(list(0.5 * sq, sq[5:1,] * 0.45)) # w hole 309s + plot(as.owin(pol), col = 'grey') 309s + plot(as.owin(st_sfc(pol)), col = 'grey') 309s + mpol = st_multipolygon(list( 309s + list(sq, sq[5:1,] * 0.9), 309s + list(sq * 2, sq[5:1,] * 1.8))) 309s + plot(as.owin(mpol), col = 'grey') 309s + plot(as.owin(st_sfc(mpol)), col = 'grey') 309s + plot(as.owin(st_sfc(pol, mpol)), col = 'grey') 309s + plot(as.owin(st_sf(a=1:2, st_sfc(pol, mpol))), col = 'grey') 309s + (o = as.owin(st_sf(a=1:2, st_sfc(pol, mpol)))) 309s + st_as_sfc(o) 309s + 309s + plot(st_as_sfc(o), col = 'blue', main = 'st_as_sfc(o)') 309s + plot(st_as_sf(o), col = 'blue', main = 'st_as_sf(o)') 309s + 309s + data(japanesepines) 309s + st_as_sf(japanesepines) # warns about multiplier 309s + jp = rescale(japanesepines) 309s + st_as_sf(jp) # No warning 309s + 309s + data(nztrees) 309s + qNZ <- quadratcount(nztrees, nx=4, ny=3) 309s + ts = as.tess(qNZ) 309s + plot(st_as_sfc(ts)) 309s + 309s + ls = st_linestring(rbind(c(0,0), c(1,1), c(2,0))) 309s + plot(as.psp(ls)) 309s + mls = st_multilinestring(list(rbind(c(0,0), c(1,1), c(2,0)), rbind(c(3,3), c(4,2)))) 309s + plot(as.psp(mls)) 309s + 309s + plot(as.psp(st_sfc(ls))) 309s + plot(as.psp(st_sfc(mls))) 309s + plot(as.psp(st_sfc(ls, mls))) 309s + 309s + sf = st_sf(st_cast(st_sfc(ls, mls), "MULTILINESTRING"), marks = 1:2, foo = 2:1) 309s + as.psp(sf) # picks marks itself 309s + as.psp(sf, marks = 5:1) 309s + 309s + (x = st_as_sf(as.psp(sf))) 309s + (y = st_as_sfc(as.psp(sf))) 309s + all.equal(st_geometry(x), y) 309s + 309s + # Test sf -> ppp conversion when the conversion involves more than 1 column of mark(s) 309s + # (https://github.com/r-spatial/sf/issues/2450) 309s + reference_ppp <- ppp( 309s + x = c(0.25, 0.75), 309s + y = c(0.25, 0.75), 309s + # We consider a data.frame of marks which includes several types of columns 309s + # (and also a list column) 309s + marks = data.frame( 309s + a = TRUE, b = 1L, c = pi, d = I(list(list(1, 2), list("A", "B", "C"))), 309s + #NB: row.names should always defined as a vector with character character 309s + #since they are converted as characters when applying st_as_sf (see line 309s + #below) which mixes NA and not-NA row.names 309s + row.names = c("point1", "point2") 309s + ) 309s + ) 309s + # The st_as_sf conversion returns an sf object where the first row is the Window 309s + # and the other rows are the points 309s + tmp <- st_as_sf(reference_ppp) 309s + pts <- tmp[tmp$label == "point", 1:4] 309s + target_ppp <- as.ppp(pts) 309s + Window(target_ppp) <- owin() 309s + all.equal(reference_ppp, target_ppp) 309s + } 309s spatstat.univar 3.1-1 310s spatstat.geom 3.3-5 310s spatstat.random 3.3-2 311s Simple feature collection with 51 features and 1 field 311s Geometry type: GEOMETRY 311s Dimension: XY 311s Bounding box: xmin: 123829.8 ymin: 14740.06 xmax: 930518.6 ymax: 318255.5 311s CRS: NA 311s First 10 features: 311s label geom 311s 1 window MULTIPOLYGON (((886135.8 31... 311s 2 point POINT (339121.1 257811.6) 311s 3 point POINT (827440.4 246568.3) 311s 4 point POINT (451339.2 207943.6) 311s 5 point POINT (268749.7 203323.4) 311s 6 point POINT (516676.5 198556.1) 311s 7 point POINT (692366 238643.1) 311s 8 point POINT (843278.5 287241.6) 311s 9 point POINT (648477.7 235466.6) 311s 10 point POINT (852593 267248.3) 311s Error in st_poly_sample(x, size = size, ..., type = type, by_polygon = by_polygon, : 311s rthomas is not an exported function from spatstat.random. 311s Error in st_poly_sample(x, size = size, ..., type = type, by_polygon = by_polygon, : 311s The spatstat function rThomas did not return a valid result. Consult the help file. 311s Error message from spatstat: 311s Error in spatstat_fun(..., win = spatstat.geom::as.owin(x)) : 311s argument "scale" is missing, with no default 311s 311s Error : Only projected coordinates may be converted to spatstat class objects 311s Error in `marks<-.ppp`(`*tmp*`, value = value) : 311s number of rows of data frame != number of points 311s Error : Only projected coordinates may be converted to spatstat class objects 311s [1] TRUE 311s > ## IGNORE_RDIFF_END 311s > 311s Warning message: 311s In st_as_sfc.owin(spatstat.geom::as.owin(x)) : 311s The spatstat object has an measurement unit multiplier != 1. Consider rescaling before converting. 311s END TEST spatstat.R with result 0 311s BEGIN TEST stars.R 311s 311s R version 4.4.3 (2025-02-28) -- "Trophy Case" 311s Copyright (C) 2025 The R Foundation for Statistical Computing 311s Platform: x86_64-pc-linux-gnu 311s 311s R is free software and comes with ABSOLUTELY NO WARRANTY. 311s You are welcome to redistribute it under certain conditions. 311s Type 'license()' or 'licence()' for distribution details. 311s 311s R is a collaborative project with many contributors. 311s Type 'contributors()' for more information and 311s 'citation()' on how to cite R or R packages in publications. 311s 311s Type 'demo()' for some demos, 'help()' for on-line help, or 311s 'help.start()' for an HTML browser interface to help. 311s Type 'q()' to quit R. 311s 311s > suppressPackageStartupMessages(library(sf)) 312s > 312s > tif = system.file("tif/geomatrix.tif", package = "sf") 312s > 312s > gdal_metadata(tif) 312s [1] "AREA_OR_POINT=Point" 312s > gdal_metadata(tif, NA_character_) 312s [1] "IMAGE_STRUCTURE" "DERIVED_SUBDATASETS" "" 312s > try(gdal_metadata(tif, "wrongDomain")) 312s Error in gdal_metadata(tif, "wrongDomain") : 312s domain_item[1] not found in available metadata domains 312s > gdal_metadata(tif, c("IMAGE_STRUCTURE")) 312s $INTERLEAVE 312s [1] "BAND" 312s 312s attr(,"class") 312s [1] "gdal_metadata" 312s > try(length(gdal_metadata(tif, c("DERIVED_SUBDATASETS")))) # fails on Fedora 26 312s [1] 2 312s > 312s > if (require(stars, quietly = TRUE)) { 312s + tif = system.file("tif/geomatrix.tif", package = "sf") 312s + r = read_stars(tif) 312s + d = (st_dimensions(r)) 312s + gt = c(1841001.75, 1.5, -5, 1144003.25, -5, -1.5) 312s + x1 = st_as_sfc(d, as_points = TRUE, use_cpp = TRUE, geotransform = gt) 312s + x2 = st_as_sfc(d, as_points = TRUE, use_cpp = FALSE, geotransform = gt) 312s + print(identical(x1, x2)) 312s + y1 = st_as_sfc(d, as_points = FALSE, use_cpp = TRUE, geotransform = gt) 312s + y2 = st_as_sfc(d, as_points = FALSE, use_cpp = FALSE, geotransform = gt) 312s + print(identical(y1, y2)) 312s + 312s + # rectilinear grid: 312s + m = matrix(1:20, nrow = 5, ncol = 4) 312s + x = c(0,0.5,1,2,4,5) 312s + y = c(0.3,0.5,1,2,2.2) 312s + r = st_as_stars(list(m = m), dimensions = st_dimensions(x = x, y = y, .raster = c("x", "y"))) 312s + print(st_as_sfc(st_dimensions(r), as_points = TRUE)) 312s + print(st_as_sfc(st_dimensions(r), as_points = FALSE)) 312s + 312s + # curvilinear grid: 312s + lon = st_as_stars(matrix(1:5, 4, 5, byrow = TRUE)) 312s + lat = st_as_stars(matrix(1:4, 4, 5)) 312s + ll = c(X1 = lon, X2 = lat) 312s + curv = st_as_stars(st_as_stars(t(m)), curvilinear = setNames(ll, c("X1", "X2"))) 312s + print(st_as_sfc(st_dimensions(curv), as_points = TRUE)) 312s + print(st_as_sfc(st_dimensions(curv), as_points = FALSE)) 312s + 312s + demo(nc, echo = FALSE, ask = FALSE) 312s + print(x <- st_rasterize(nc)) # default grid: 312s + print(p <- st_as_sf(x, as_points = FALSE)) # polygonize: follow raster boundaries 312s + print(p <- st_as_sf(x, as_points = FALSE, use_integer = TRUE)) # polygonize integers: follow raster boundaries 312s + print(try(p <- st_as_sf(x, as_points = TRUE))) # polygonize: contour, requies GDAL >= 2.4.0 312s + if (utils::packageVersion("stars") >= "0.2-1") { 312s + write_stars(read_stars(tif), tempfile(fileext = ".tif")) 312s + write_stars(read_stars(tif, proxy = TRUE), tempfile(fileext = ".tif")) 312s + write_stars(read_stars(tif, proxy = TRUE), tempfile(fileext = ".tif"), chunk_size = c(200,200)) 312s + na.tif = read_stars(system.file("tif/na.tif", package = "stars")) 312s + write_stars(na.tif, "na.tif") 312s + write_stars(na.tif, "na.tif", NA_value = -999) 312s + na.tif = read_stars(system.file("tif/na.tif", package = "stars"), NA_value = -999) 312s + write_stars(na.tif, "na.tif") 312s + write_stars(na.tif, "na.tif", NA_value = -999) 312s + na.tif = read_stars(system.file("tif/na.tif", package = "stars"), NA_value = -999, proxy = TRUE) 312s + write_stars(na.tif, "na.tif") 312s + write_stars(na.tif, "na.tif", NA_value = -999) 312s + } 312s + # https://github.com/mtennekes/tmap/issues/368 312s + if (utils::packageVersion("stars") > "0.4-0") { 312s + lc = system.file('tif/lc.tif', package = 'stars') 312s + if (lc != "") { 312s + r = read_stars(lc, RAT = "Land Cover Class") 312s + r <- droplevels(r) 312s + } 312s + } 312s + } 312s [1] TRUE 312s [1] TRUE 312s Geometry set for 20 features 312s Geometry type: POINT 312s Dimension: XY 312s Bounding box: xmin: 0.25 ymin: 0.4 xmax: 4.5 ymax: 2.1 312s CRS: NA 312s First 5 geometries: 312s POINT (0.25 0.4) 312s POINT (0.75 0.4) 312s POINT (1.5 0.4) 312s POINT (3 0.4) 312s POINT (4.5 0.4) 312s Geometry set for 20 features 312s Geometry type: POLYGON 312s Dimension: XY 312s Bounding box: xmin: 0 ymin: 0.3 xmax: 5 ymax: 2.2 312s CRS: NA 312s First 5 geometries: 312s POLYGON ((0 0.3, 0.5 0.3, 0.5 0.5, 0 0.5, 0 0.3)) 312s POLYGON ((0.5 0.3, 1 0.3, 1 0.5, 0.5 0.5, 0.5 0... 312s POLYGON ((1 0.3, 2 0.3, 2 0.5, 1 0.5, 1 0.3)) 312s POLYGON ((2 0.3, 4 0.3, 4 0.5, 2 0.5, 2 0.3)) 312s Geometry set for 20 features 312s Geometry type: POINT 312s Dimension: XY 312s Bounding box: xmin: 1 ymin: 1 xmax: 5 ymax: 4 312s Geodetic CRS: WGS 84 (CRS84) 312s First 5 geometries: 312s Geometry set for 20 features 312s Geometry type: POLYGON 312s Dimension: XY 312s Bounding box: xmin: 0.5 ymin: 0.5 xmax: 5.5 ymax: 4.5 312s Geodetic CRS: WGS 84 (CRS84) 312s First 5 geometries: 312s POLYGON ((4 0.3, 5 0.3, 5 0.5, 4 0.5, 4 0.3)) 312s POINT (1 1) 312s POINT (1 2) 312s POINT (1 3) 312s POINT (1 4) 312s POINT (2 1) 312s POLYGON ((0.5 0.5, 0.5 1.5, 1.5 1.5, 1.5 0.5, 0... 312s POLYGON ((0.5 1.5, 0.5 2.5, 1.5 2.5, 1.5 1.5, 0... 312s POLYGON ((0.5 2.5, 0.5 3.5, 1.5 3.5, 1.5 2.5, 0... 312s POLYGON ((0.5 3.5, 0.5 4.5, 1.5 4.5, 1.5 3.5, 0... 312s POLYGON ((1.5 0.5, 1.5 1.5, 2.5 1.5, 2.5 0.5, 1... 312s stars object with 2 dimensions and 12 attributes 312s attribute(s): 312s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 312s AREA 0.042 0.108 0.142 1.451932e-01 0.181 0.241 30904 312s PERIMETER 0.999 1.461 1.716 1.786110e+00 2.004 3.640 30904 312s CNTY_ 1825.000 1907.000 1989.000 1.998403e+03 2085.000 2241.000 30904 312s CNTY_ID 1825.000 1907.000 1989.000 1.998403e+03 2085.000 2241.000 30904 312s FIPSNO 37001.000 37049.000 37101.000 3.710042e+04 37153.000 37199.000 30904 312s CRESS_ID 1.000 25.000 51.000 5.071206e+01 77.000 100.000 30904 312s BIR74 248.000 1323.000 2648.000 3.791637e+03 4139.000 21588.000 30904 312s SID74 0.000 3.000 5.000 7.891985e+00 10.000 44.000 30904 312s NWBIR74 1.000 297.000 844.000 1.246210e+03 1396.000 8027.000 30904 312s BIR79 319.000 1606.000 3108.000 4.852046e+03 5400.000 30757.000 30904 312s SID79 0.000 3.000 6.000 9.584098e+00 13.000 57.000 30904 312s NWBIR79 3.000 360.000 1058.000 1.604642e+03 1524.000 11631.000 30904 312s dimension(s): 312s from to offset delta refsys point x/y 312s x 1 461 -84.32 0.01925 NAD27 FALSE [x] 312s y 1 141 36.59 -0.01925 NAD27 FALSE [y] 313s Simple feature collection with 34097 features and 12 fields 313s Geometry type: POLYGON 313s Dimension: XY 313s Bounding box: xmin: -84.32385 ymin: 33.87563 xmax: -75.45034 ymax: 36.58965 313s Geodetic CRS: NAD27 313s First 10 features: 313s AREA PERIMETER CNTY_ CNTY_ID FIPSNO CRESS_ID BIR74 SID74 NWBIR74 BIR79 313s 1 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 313s 2 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 313s 3 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 313s 4 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 313s 5 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 313s 6 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 313s 7 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 313s 8 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 313s 9 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 313s 10 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 313s SID79 NWBIR79 geometry 313s 1 0 19 POLYGON ((-81.66757 36.5896... 313s 2 0 19 POLYGON ((-81.64833 36.5896... 313s 3 0 19 POLYGON ((-81.62908 36.5896... 313s 4 0 19 POLYGON ((-81.60983 36.5896... 313s 5 0 19 POLYGON ((-81.59058 36.5896... 313s 6 0 19 POLYGON ((-81.57133 36.5896... 313s 7 0 19 POLYGON ((-81.55208 36.5896... 313s 8 0 19 POLYGON ((-81.53283 36.5896... 313s 9 0 19 POLYGON ((-81.51359 36.5896... 313s 10 0 19 POLYGON ((-81.49434 36.5896... 316s Simple feature collection with 34097 features and 12 fields 316s Geometry type: POLYGON 316s Dimension: XY 316s Bounding box: xmin: -84.32385 ymin: 33.87563 xmax: -75.45034 ymax: 36.58965 316s Geodetic CRS: NAD27 316s First 10 features: 316s AREA PERIMETER CNTY_ CNTY_ID FIPSNO CRESS_ID BIR74 SID74 NWBIR74 BIR79 316s 1 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 316s 2 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 316s 3 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 316s 4 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 316s 5 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 316s 6 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 316s 7 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 316s 8 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 316s 9 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 316s 10 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 316s SID79 NWBIR79 geometry 316s 1 0 19 POLYGON ((-81.66757 36.5896... 316s 2 0 19 POLYGON ((-81.64833 36.5896... 316s 3 0 19 POLYGON ((-81.62908 36.5896... 316s 4 0 19 POLYGON ((-81.60983 36.5896... 316s 5 0 19 POLYGON ((-81.59058 36.5896... 316s 6 0 19 POLYGON ((-81.57133 36.5896... 316s 7 0 19 POLYGON ((-81.55208 36.5896... 316s 8 0 19 POLYGON ((-81.53283 36.5896... 316s 9 0 19 POLYGON ((-81.51359 36.5896... 316s 10 0 19 POLYGON ((-81.49434 36.5896... 316s Simple feature collection with 34097 features and 12 fields 316s Geometry type: POINT 316s Dimension: XY 316s Bounding box: xmin: -84.31423 ymin: 33.88525 xmax: -75.45997 ymax: 36.58003 316s Geodetic CRS: NAD27 316s First 10 features: 316s AREA PERIMETER CNTY_ CNTY_ID FIPSNO CRESS_ID BIR74 SID74 NWBIR74 BIR79 316s 1 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 316s 2 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 316s 3 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 316s 4 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 316s 5 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 316s 6 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 316s 7 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 316s 8 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 316s 9 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 316s 10 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 316s SID79 NWBIR79 geometry 316s 1 0 19 POINT (-81.65795 36.58003) 316s 2 0 19 POINT (-81.6387 36.58003) 316s 3 0 19 POINT (-81.61945 36.58003) 316s 4 0 19 POINT (-81.6002 36.58003) 316s 5 0 19 POINT (-81.58096 36.58003) 316s 6 0 19 POINT (-81.56171 36.58003) 316s 7 0 19 POINT (-81.54246 36.58003) 316s 8 0 19 POINT (-81.52321 36.58003) 316s 9 0 19 POINT (-81.50396 36.58003) 316s 10 0 19 POINT (-81.48471 36.58003) 316s 316s 316s 316s 316s > 316s > r = gdal_read(tif) 316s > gt = c(0,1,0,0,0,1) 316s > gdal_inv_geotransform(gt) 316s [1] 0 1 0 0 0 1 316s > rc = expand.grid(x=1:3, y = 1:3) 316s > #(xy = xy_from_colrow(rc, gt)) 316s > #xy_from_colrow(xy, gt, inverse = TRUE) 316s > crs <- gdal_crs(tif) 316s > 316s > try(gdal_metadata("foo")) 316s [1] NA 316s > gdal_metadata(tif) 316s [1] "AREA_OR_POINT=Point" 316s > 316s END TEST stars.R with result 0 316s BEGIN TEST testthat.R 316s 316s R version 4.4.3 (2025-02-28) -- "Trophy Case" 316s Copyright (C) 2025 The R Foundation for Statistical Computing 316s Platform: x86_64-pc-linux-gnu 316s 316s R is free software and comes with ABSOLUTELY NO WARRANTY. 316s You are welcome to redistribute it under certain conditions. 316s Type 'license()' or 'licence()' for distribution details. 316s 316s R is a collaborative project with many contributors. 316s Type 'contributors()' for more information and 316s 'citation()' on how to cite R or R packages in publications. 316s 316s Type 'demo()' for some demos, 'help()' for on-line help, or 316s 'help.start()' for an HTML browser interface to help. 316s Type 'q()' to quit R. 316s 316s > if (require(testthat, quietly = TRUE)) { 316s + suppressPackageStartupMessages(library(sf)) 316s + test_check("sf") 316s + } 316s Coordinate Reference System: 316s User input: EPSG:4326 316s wkt: 316s GEOGCRS["WGS 84", 316s ENSEMBLE["World Geodetic System 1984 ensemble", 316s MEMBER["World Geodetic System 1984 (Transit)"], 316s MEMBER["World Geodetic System 1984 (G730)"], 316s MEMBER["World Geodetic System 1984 (G873)"], 316s MEMBER["World Geodetic System 1984 (G1150)"], 316s MEMBER["World Geodetic System 1984 (G1674)"], 316s MEMBER["World Geodetic System 1984 (G1762)"], 316s MEMBER["World Geodetic System 1984 (G2139)"], 316s MEMBER["World Geodetic System 1984 (G2296)"], 316s ELLIPSOID["WGS 84",6378137,298.257223563, 316s LENGTHUNIT["metre",1]], 316s ENSEMBLEACCURACY[2.0]], 316s PRIMEM["Greenwich",0, 316s ANGLEUNIT["degree",0.0174532925199433]], 316s CS[ellipsoidal,2], 316s AXIS["geodetic latitude (Lat)",north, 316s ORDER[1], 316s ANGLEUNIT["degree",0.0174532925199433]], 316s AXIS["geodetic longitude (Lon)",east, 316s ORDER[2], 316s ANGLEUNIT["degree",0.0174532925199433]], 316s USAGE[ 316s SCOPE["Horizontal component of 3D system."], 316s AREA["World."], 316s BBOX[-90,-180,90,180]], 316s ID["EPSG",4326]] 316s Coordinate Reference System: 316s No user input 316s wkt: 316s GEOGCRS["WGS 84", 316s ENSEMBLE["World Geodetic System 1984 ensemble", 316s MEMBER["World Geodetic System 1984 (Transit)"], 316s MEMBER["World Geodetic System 1984 (G730)"], 316s MEMBER["World Geodetic System 1984 (G873)"], 316s MEMBER["World Geodetic System 1984 (G1150)"], 316s MEMBER["World Geodetic System 1984 (G1674)"], 316s MEMBER["World Geodetic System 1984 (G1762)"], 316s MEMBER["World Geodetic System 1984 (G2139)"], 316s MEMBER["World Geodetic System 1984 (G2296)"], 316s ELLIPSOID["WGS 84",6378137,298.257223563, 316s LENGTHUNIT["metre",1]], 316s ENSEMBLEACCURACY[2.0]], 316s PRIMEM["Greenwich",0, 316s ANGLEUNIT["degree",0.0174532925199433]], 316s CS[ellipsoidal,2], 316s AXIS["geodetic latitude (Lat)",north, 316s ORDER[1], 316s ANGLEUNIT["degree",0.0174532925199433]], 316s AXIS["geodetic longitude (Lon)",east, 316s ORDER[2], 316s ANGLEUNIT["degree",0.0174532925199433]], 316s USAGE[ 316s SCOPE["Horizontal component of 3D system."], 316s AREA["World."], 316s BBOX[-90,-180,90,180]], 316s ID["EPSG",4326]] 321s Cannot open layer foo 321s Reading layer `nospatial' from data source 321s `/usr/lib/R/site-library/sf/gpkg/nospatial.gpkg' using driver `GPKG' 321s Reading layer `nospatial' from data source 321s `/usr/lib/R/site-library/sf/gpkg/nospatial.gpkg' using driver `GPKG' 321s Reading layer `nc' from data source `/usr/lib/R/site-library/sf/shape/nc.shp' using driver `ESRI Shapefile' 321s Simple feature collection with 100 features and 14 fields 321s Geometry type: MULTIPOLYGON 321s Dimension: XY 321s Bounding box: xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965 321s Geodetic CRS: NAD27 321s OGR: Unsupported geometry type 323s Failed to create feature 1 in x 323s Failed to create feature 1 in x 324s [ FAIL 0 | WARN 4 | SKIP 20 | PASS 717 ] 324s 324s == Skipped tests (20) ========================================================== 324s * On CRAN (1): 'test-gdal.R:101:5' 324s * Sys.getenv("USER") %in% c("edzer", "travis") is not TRUE (3): 324s 'test-gdal.R:55:3', 'test-write.R:47:3', 'test-write.R:130:3' 324s * empty test (7): 'test-crs.R:66:1', 'test-crs.R:99:1', 324s 'test-normalize.R:29:1', 'test-proj.R:1:1', 'test-read.R:7:1', 324s 'test-s2.R:20:1', 'test-sf.R:52:1' 324s * sf_extSoftVersion()[["GDAL"]] < "2.5.0" && sf_extSoftVersion()[["proj.4"]] < 324s (1): 'test-crs.R:61:3' 324s * sf_extSoftVersion()[["GDAL"]] >= "2.5.0" is TRUE (1): 'test-gdal.R:46:3' 324s * sf_extSoftVersion()[["proj.4"]] >= "6.0.0" is TRUE (3): 'test-crs.R:44:3', 324s 'test-crs.R:49:3', 'test-crs.R:55:3' 324s * sf_use_s2() is TRUE (1): 'test-geos.R:20:5' 324s * {RPostgres} is not installed (3): 'test-postgis_ODBC.R:1:1', 324s 'test-postgis_RPostgreSQL.R:1:1', 'test-postgis_RPostgres.R:12:1' 324s 324s [ FAIL 0 | WARN 4 | SKIP 20 | PASS 717 ] 324s > 324s END TEST testthat.R with result 0 324s BEGIN TEST units.R 324s 324s R version 4.4.3 (2025-02-28) -- "Trophy Case" 324s Copyright (C) 2025 The R Foundation for Statistical Computing 324s Platform: x86_64-pc-linux-gnu 324s 324s R is free software and comes with ABSOLUTELY NO WARRANTY. 324s You are welcome to redistribute it under certain conditions. 324s Type 'license()' or 'licence()' for distribution details. 324s 324s R is a collaborative project with many contributors. 324s Type 'contributors()' for more information and 324s 'citation()' on how to cite R or R packages in publications. 324s 324s Type 'demo()' for some demos, 'help()' for on-line help, or 324s 'help.start()' for an HTML browser interface to help. 324s Type 'q()' to quit R. 324s 324s > suppressPackageStartupMessages(library(sf)) 325s > suppressPackageStartupMessages(library(units)) 325s > 325s > if (utils::packageVersion("units") >= "0.5-0") 325s + units_options(auto_convert_names_to_symbols = FALSE) 325s > 325s > st_crs(4326)$ud_unit 325s 1 [degree] 325s > 325s > u = names(sf:::udunits_from_proj)[1:21] 325s > 325s > unrecognized = NULL 325s > out = sapply(u, function(x) { 325s + p4s = paste0("+proj=laea +units=", x) 325s + cat(x, ": ") 325s + ret = try(st_crs(p4s)$ud_unit, silent = TRUE) 325s + if (! inherits(ret, "try-error")) 325s + print(ret) 325s + else 325s + unrecognized = c(unrecognized, x) 325s + }) 325s km : 1 [km] 325s m : 1 [m] 325s dm : 1 [dm] 325s cm : 1 [cm] 325s mm : 1 [mm] 325s kmi : 1 [nautical_mile] 325s in : 1 [inch] 325s ft : 1 [foot] 325s yd : 1 [yard] 325s mi : 1 [mi] 325s fath : 1 [fathom] 325s ch : 1 [chain] 325s link : 1 [link] 325s us-in : 1 [us_in] 325s us-ft : 1 [US_survey_foot] 325s us-yd : 1 [US_survey_yard] 325s us-ch : 1 [chain] 325s us-mi : 1 [US_survey_mile] 325s ind-yd : 1 [ind_yd] 325s ind-ft : 1 [ind_ft] 325s ind-ch : 1 [ind_ch] 325s > 325s > if (length(unrecognized)) 325s + print(paste("unrecognized units:", paste(unrecognized, collapse = ", "), ": older GDAL version?")) 325s > 325s END TEST units.R with result 0 325s BEGIN TEST wkb.R 325s 325s R version 4.4.3 (2025-02-28) -- "Trophy Case" 325s Copyright (C) 2025 The R Foundation for Statistical Computing 325s Platform: x86_64-pc-linux-gnu 325s 325s R is free software and comes with ABSOLUTELY NO WARRANTY. 325s You are welcome to redistribute it under certain conditions. 325s Type 'license()' or 'licence()' for distribution details. 325s 325s R is a collaborative project with many contributors. 325s Type 'contributors()' for more information and 325s 'citation()' on how to cite R or R packages in publications. 325s 325s Type 'demo()' for some demos, 'help()' for on-line help, or 325s 'help.start()' for an HTML browser interface to help. 325s Type 'q()' to quit R. 325s 325s > suppressPackageStartupMessages(library(sf)) 326s > round_trip = function(x, EWKB = FALSE, pureR = FALSE) { 326s + if (inherits(x, "sfg")) 326s + x = st_sfc(x) 326s + wkb = st_as_binary(x, EWKB = EWKB, pureR = pureR) 326s + class(wkb) = "WKB" 326s + # print(wkb) 326s + y = st_as_sfc(wkb, EWKB = EWKB, pureR = pureR) 326s + a = all.equal(x, y) 326s + if (length(a) == 1 && is.logical(a) && a) 326s + TRUE 326s + else { 326s + print(x) 326s + print(wkb) 326s + print(y) 326s + FALSE 326s + } 326s + } 326s > 326s > p3 = st_point(c(0,0,0)) 326s > p3m = st_point(c(0,0,0), "XYM") 326s > p4 = st_point(c(0,0,0,0)) 326s > p2 = st_point(c(0,0)) 326s > ls = st_linestring(matrix(1:6,3)) 326s > mp = st_multipoint(matrix(1:6,3)) 326s > 326s > outer = matrix(c(0,0,10,0,10,10,0,10,0,0),ncol=2, byrow=TRUE) 326s > hole1 = matrix(c(1,1,1,2,2,2,2,1,1,1),ncol=2, byrow=TRUE) 326s > hole2 = matrix(c(5,5,5,6,6,6,6,5,5,5),ncol=2, byrow=TRUE) 326s > pts = list(outer, hole1, hole2) 326s > pl1 = st_polygon(pts) 326s > 326s > pol1 = list(outer, hole1, hole2) 326s > pol2 = list(outer + 12, hole1 + 12) 326s > pol3 = list(outer + 24) 326s > mp1 = st_multipolygon(list(pol1,pol2,pol3)) 326s > 326s > ml1 = st_multilinestring(list(outer, hole1, hole2)) 326s > gc = st_geometrycollection(list(p2, ls, pl1, mp1)) 326s > 326s > sapply(list(p3, p3m, p4, p2, ls, mp, pl1, mp1, ml1, gc), round_trip, EWKB = FALSE) 326s [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 326s > sapply(list(p3, p3m, p4, p2, ls, mp, pl1, mp1, ml1, gc), round_trip, EWKB = FALSE, pureR = TRUE) 326s [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 326s > sapply(list(p3, p3m, p4, p2, ls, mp, pl1, mp1, ml1, gc), round_trip, EWKB = TRUE) 326s [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 326s > sapply(list(p3, p3m, p4, p2, ls, mp, pl1, mp1, ml1, gc), round_trip, EWKB = TRUE, pureR = TRUE) 326s [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 326s > 326s > rawToHex(st_as_binary(st_multipoint(matrix(1:6,3)))) 326s [1] "0104000000030000000101000000000000000000f03f0000000000001040010100000000000000000000400000000000001440010100000000000000000008400000000000001840" 326s > rawToHex(st_as_binary(st_sfc(st_point(c(0,1)), st_multipoint(matrix(1:6,3))))) 326s [1] "01010000000000000000000000000000000000f03f" 326s [2] "0104000000030000000101000000000000000000f03f0000000000001040010100000000000000000000400000000000001440010100000000000000000008400000000000001840" 326s > try(rawToHex("error")) 326s Error in rawToHex("error") : 326s not implemented for objects of class character 326s > 326s > # debug roundtrips sf -> GDAL -> sf; 326s > # the first WKT is what GDAL reports, and will lack M 326s > st_as_text(st_sfc(sf:::CPL_roundtrip(st_sfc(st_linestring(matrix(1:18,6,3),dim="XYZ"))))) 326s LINESTRING (1 7 13,2 8 14,3 9 15,4 10 16,5 11 17,6 12 18) 326s [1] "LINESTRING Z (1 7 13, 2 8 14, 3 9 15, 4 10 16, 5 11 17, 6 12 18)" 326s > st_as_text(st_sfc(sf:::CPL_roundtrip(st_sfc(st_multipoint(matrix(1:18,6,3),dim="XYZ"))))) 326s MULTIPOINT (1 7 13,2 8 14,3 9 15,4 10 16,5 11 17,6 12 18) 326s [1] "MULTIPOINT Z ((1 7 13), (2 8 14), (3 9 15), (4 10 16), (5 11 17), (6 12 18))" 326s > st_as_text(st_sfc(sf:::CPL_roundtrip(st_sfc(st_point(c(0,0,0), dim="XYZ"))))) 326s POINT (0 0 0) 326s [1] "POINT Z (0 0 0)" 326s > 326s > if (sf:::CPL_gdal_version() >= "2.1.0") { # address GDAL/Fedora (gdal 2.0.2) error: 326s + st_as_text(st_sfc(sf:::CPL_roundtrip(st_sfc(st_linestring(matrix(1:18,6,3),dim="XYM"))))) 326s + st_as_text(st_sfc(sf:::CPL_roundtrip(st_sfc(st_multipoint(matrix(1:18,6,3),dim="XYM"))))) 326s + st_as_text(st_sfc(sf:::CPL_roundtrip(st_sfc(st_point(c(0,0,0), dim="XYM"))))) 326s + } else { 326s + "(output expected when gdal <= 2.1.0, e.g. CRAN/fedora)" 326s + } 326s LINESTRING (1 7,2 8,3 9,4 10,5 11,6 12) 326s MULTIPOINT (1 7,2 8,3 9,4 10,5 11,6 12) 326s POINT (0 0) 326s [1] "POINT M (0 0 0)" 326s > 326s END TEST wkb.R with result 0 326s autopkgtest [22:35:01]: test run-unit-test: -----------------------] 327s autopkgtest [22:35:02]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 327s run-unit-test PASS 327s autopkgtest [22:35:02]: test pkg-r-autopkgtest: preparing testbed 401s autopkgtest [22:36:16]: testbed dpkg architecture: amd64 401s autopkgtest [22:36:16]: testbed apt version: 2.9.31ubuntu1 401s autopkgtest [22:36:16]: @@@@@@@@@@@@@@@@@@@@ test bed setup 401s autopkgtest [22:36:16]: testbed release detected to be: plucky 402s autopkgtest [22:36:17]: updating testbed package index (apt update) 403s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 403s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 403s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 403s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 403s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 403s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 403s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 403s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 403s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 403s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 403s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 403s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 403s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 403s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 403s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 403s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 403s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 404s Fetched 1265 kB in 1s (1355 kB/s) 405s Reading package lists... 405s Reading package lists... 405s Building dependency tree... 405s Reading state information... 406s Calculating upgrade... 406s Calculating upgrade... 406s The following package was automatically installed and is no longer required: 406s libnl-genl-3-200 406s Use 'sudo apt autoremove' to remove it. 406s The following NEW packages will be installed: 406s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 406s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 406s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 406s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 406s The following packages will be upgraded: 406s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 406s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base 406s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools 406s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0 406s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 406s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0 406s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1 406s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64 406s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6 406s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200 406s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib 406s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2 406s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 406s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 406s linux-firmware linux-generic linux-headers-generic linux-headers-virtual 406s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 406s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 406s parted pci.ids pciutils pinentry-curses python-apt-common python3 406s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi 406s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal 406s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13 406s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd 406s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd 406s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail 406s xz-utils 406s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 406s Need to get 829 MB of archives. 406s After this operation, 325 MB of additional disk space will be used. 406s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 407s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 407s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 408s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 408s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 409s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 409s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 409s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 409s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 409s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 409s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 409s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 409s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 409s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 409s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 409s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 409s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 409s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 409s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 409s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 409s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 409s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 409s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 409s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 409s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 409s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 409s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 409s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 409s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 409s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 409s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 409s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 409s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 410s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 410s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 410s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 410s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 410s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 410s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 410s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 410s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 410s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 410s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 410s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 410s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 410s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 410s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 410s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 410s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 410s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 410s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 410s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 410s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 410s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 410s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 410s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 410s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 410s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 410s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 410s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 410s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 410s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 410s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 410s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 410s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 410s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 411s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 411s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 411s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 411s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 411s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 411s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 411s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 411s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 411s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 411s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 411s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 411s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 411s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 411s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 411s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 411s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 411s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 411s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 411s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 411s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 411s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 411s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 411s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 411s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 411s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 411s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 411s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 411s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 411s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 411s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 411s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 411s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 411s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 411s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 411s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 411s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 412s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 412s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 412s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 412s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 412s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 412s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 412s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 442s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 442s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 442s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 442s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 442s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 442s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 442s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 442s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 444s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 445s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 451s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 451s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 451s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 451s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 451s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 451s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 452s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 452s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 452s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 452s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 452s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 452s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 452s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 452s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 452s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 452s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 452s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 452s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 452s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 453s Preconfiguring packages ... 453s Fetched 829 MB in 46s (17.9 MB/s) 453s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109140 files and directories currently installed.) 453s Preparing to unpack .../ncurses-bin_6.5+20250216-2_amd64.deb ... 453s Unpacking ncurses-bin (6.5+20250216-2) over (6.5+20250216-1) ... 453s Setting up ncurses-bin (6.5+20250216-2) ... 454s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109140 files and directories currently installed.) 454s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu1_amd64.deb ... 454s Unpacking libc-dev-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 454s Preparing to unpack .../libc6-dev_2.41-1ubuntu1_amd64.deb ... 454s Unpacking libc6-dev:amd64 (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 454s Preparing to unpack .../locales_2.41-1ubuntu1_all.deb ... 454s Unpacking locales (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 454s Preparing to unpack .../libc6_2.41-1ubuntu1_amd64.deb ... 454s Checking for services that may need to be restarted... 454s Checking init scripts... 454s Checking for services that may need to be restarted... 454s Checking init scripts... 454s Stopping some services possibly affected by the upgrade (will be restarted later): 454s cron: stopping...done. 454s 454s Unpacking libc6:amd64 (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 455s Setting up libc6:amd64 (2.41-1ubuntu1) ... 455s Checking for services that may need to be restarted... 455s Checking init scripts... 455s Restarting services possibly affected by the upgrade: 455s cron: restarting...done. 455s 455s Services restarted successfully. 455s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109141 files and directories currently installed.) 455s Preparing to unpack .../libc-bin_2.41-1ubuntu1_amd64.deb ... 455s Unpacking libc-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 455s Setting up libc-bin (2.41-1ubuntu1) ... 455s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109141 files and directories currently installed.) 455s Preparing to unpack .../linux-libc-dev_6.14.0-10.10_amd64.deb ... 455s Unpacking linux-libc-dev:amd64 (6.14.0-10.10) over (6.12.0-16.16) ... 456s Preparing to unpack .../libatomic1_15-20250222-0ubuntu1_amd64.deb ... 456s Unpacking libatomic1:amd64 (15-20250222-0ubuntu1) over (15-20250213-1ubuntu1) ... 456s Preparing to unpack .../gcc-15-base_15-20250222-0ubuntu1_amd64.deb ... 456s Unpacking gcc-15-base:amd64 (15-20250222-0ubuntu1) over (15-20250213-1ubuntu1) ... 456s Setting up gcc-15-base:amd64 (15-20250222-0ubuntu1) ... 456s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 456s Preparing to unpack .../libgcc-s1_15-20250222-0ubuntu1_amd64.deb ... 456s Unpacking libgcc-s1:amd64 (15-20250222-0ubuntu1) over (15-20250213-1ubuntu1) ... 456s Setting up libgcc-s1:amd64 (15-20250222-0ubuntu1) ... 456s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 456s Preparing to unpack .../libstdc++6_15-20250222-0ubuntu1_amd64.deb ... 456s Unpacking libstdc++6:amd64 (15-20250222-0ubuntu1) over (15-20250213-1ubuntu1) ... 456s Setting up libstdc++6:amd64 (15-20250222-0ubuntu1) ... 456s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 456s Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ... 456s Unpacking ncurses-base (6.5+20250216-2) over (6.5+20250216-1) ... 456s Setting up ncurses-base (6.5+20250216-2) ... 456s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 456s Preparing to unpack .../ncurses-term_6.5+20250216-2_all.deb ... 456s Unpacking ncurses-term (6.5+20250216-2) over (6.5+20250216-1) ... 457s Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ... 457s Unpacking liblz4-1:amd64 (1.10.0-4) over (1.10.0-3) ... 457s Setting up liblz4-1:amd64 (1.10.0-4) ... 457s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 457s Preparing to unpack .../liblzma5_5.6.4-1_amd64.deb ... 457s Unpacking liblzma5:amd64 (5.6.4-1) over (5.6.3-1) ... 457s Setting up liblzma5:amd64 (5.6.4-1) ... 457s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 457s Preparing to unpack .../libsystemd0_257.3-1ubuntu3_amd64.deb ... 457s Unpacking libsystemd0:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 457s Setting up libsystemd0:amd64 (257.3-1ubuntu3) ... 457s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 457s Preparing to unpack .../libnss-systemd_257.3-1ubuntu3_amd64.deb ... 457s Unpacking libnss-systemd:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 457s Preparing to unpack .../systemd-sysv_257.3-1ubuntu3_amd64.deb ... 457s Unpacking systemd-sysv (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 457s Preparing to unpack .../systemd-resolved_257.3-1ubuntu3_amd64.deb ... 457s Unpacking systemd-resolved (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 457s Preparing to unpack .../libpam-systemd_257.3-1ubuntu3_amd64.deb ... 457s Unpacking libpam-systemd:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 457s Preparing to unpack .../libsystemd-shared_257.3-1ubuntu3_amd64.deb ... 457s Unpacking libsystemd-shared:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 457s Setting up libsystemd-shared:amd64 (257.3-1ubuntu3) ... 457s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 457s Preparing to unpack .../systemd_257.3-1ubuntu3_amd64.deb ... 457s Unpacking systemd (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 458s Preparing to unpack .../systemd-timesyncd_257.3-1ubuntu3_amd64.deb ... 458s Unpacking systemd-timesyncd (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 458s Preparing to unpack .../systemd-cryptsetup_257.3-1ubuntu3_amd64.deb ... 458s Unpacking systemd-cryptsetup (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 458s Preparing to unpack .../udev_257.3-1ubuntu3_amd64.deb ... 458s Unpacking udev (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 458s Preparing to unpack .../libudev1_257.3-1ubuntu3_amd64.deb ... 458s Unpacking libudev1:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 458s Setting up libudev1:amd64 (257.3-1ubuntu3) ... 458s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 458s Preparing to unpack .../libaudit-common_1%3a4.0.2-2ubuntu2_all.deb ... 458s Unpacking libaudit-common (1:4.0.2-2ubuntu2) over (1:4.0.2-2ubuntu1) ... 458s Setting up libaudit-common (1:4.0.2-2ubuntu2) ... 458s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 458s Preparing to unpack .../libcap-ng0_0.8.5-4build1_amd64.deb ... 458s Unpacking libcap-ng0:amd64 (0.8.5-4build1) over (0.8.5-4) ... 458s Setting up libcap-ng0:amd64 (0.8.5-4build1) ... 458s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 458s Preparing to unpack .../libaudit1_1%3a4.0.2-2ubuntu2_amd64.deb ... 458s Unpacking libaudit1:amd64 (1:4.0.2-2ubuntu2) over (1:4.0.2-2ubuntu1) ... 458s Setting up libaudit1:amd64 (1:4.0.2-2ubuntu2) ... 458s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 458s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu6_amd64.deb ... 458s Unpacking libseccomp2:amd64 (2.5.5-1ubuntu6) over (2.5.5-1ubuntu5) ... 458s Setting up libseccomp2:amd64 (2.5.5-1ubuntu6) ... 458s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 458s Preparing to unpack .../libselinux1_3.7-3ubuntu3_amd64.deb ... 458s Unpacking libselinux1:amd64 (3.7-3ubuntu3) over (3.7-3ubuntu2) ... 458s Setting up libselinux1:amd64 (3.7-3ubuntu3) ... 458s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 458s Preparing to unpack .../libapparmor1_4.1.0~beta5-0ubuntu8_amd64.deb ... 458s Unpacking libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) over (4.1.0~beta5-0ubuntu5) ... 458s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ... 458s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ... 459s Setting up libapt-pkg7.0:amd64 (2.9.33) ... 459s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 459s Preparing to unpack .../archives/apt_2.9.33_amd64.deb ... 459s Unpacking apt (2.9.33) over (2.9.31ubuntu1) ... 459s Setting up apt (2.9.33) ... 459s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 459s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 459s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 460s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 460s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 460s Setting up python3-minimal (3.13.2-2) ... 460s (Reading database ... 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.../73-linux-headers-generic_6.14.0-10.10_amd64.deb ... 475s Unpacking linux-headers-generic (6.14.0-10.10) over (6.12.0-16.16+2) ... 475s Selecting previously unselected package linux-perf. 475s Preparing to unpack .../74-linux-perf_6.14.0-10.10_amd64.deb ... 475s Unpacking linux-perf (6.14.0-10.10) ... 475s Selecting previously unselected package linux-tools-6.14.0-10. 475s Preparing to unpack .../75-linux-tools-6.14.0-10_6.14.0-10.10_amd64.deb ... 475s Unpacking linux-tools-6.14.0-10 (6.14.0-10.10) ... 476s Selecting previously unselected package linux-tools-6.14.0-10-generic. 476s Preparing to unpack .../76-linux-tools-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 476s Unpacking linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 476s Preparing to unpack .../77-pinentry-curses_1.3.1-2ubuntu3_amd64.deb ... 476s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 476s Preparing to unpack .../78-python3-lazr.uri_1.0.6-6_all.deb ... 476s Unpacking python3-lazr.uri (1.0.6-6) over (1.0.6-5) ... 476s Preparing to unpack .../79-python3-rpds-py_0.21.0-2ubuntu2_amd64.deb ... 476s Unpacking python3-rpds-py (0.21.0-2ubuntu2) over (0.21.0-2ubuntu1) ... 476s Preparing to unpack .../80-python3-systemd_235-1build6_amd64.deb ... 476s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 476s Preparing to unpack .../81-python3.13-gdbm_3.13.2-2_amd64.deb ... 476s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 476s Preparing to unpack .../82-ubuntu-kernel-accessories_1.549_amd64.deb ... 476s Unpacking ubuntu-kernel-accessories (1.549) over (1.548) ... 476s Preparing to unpack .../83-cloud-init_25.1-0ubuntu3_all.deb ... 476s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 476s Preparing to unpack .../84-python3-bcrypt_4.2.0-2.1build1_amd64.deb ... 476s Unpacking python3-bcrypt (4.2.0-2.1build1) over (4.2.0-2.1) ... 476s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 476s Setting up media-types (13.0.0) ... 476s Installing new version of config file /etc/mime.types ... 476s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 476s Setting up ubuntu-kernel-accessories (1.549) ... 476s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 476s Setting up pci.ids (0.0~2025.03.09-1) ... 476s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 476s Setting up apt-utils (2.9.33) ... 476s Setting up libdebuginfod-common (0.192-4) ... 476s Setting up exfatprogs (1.2.8-1) ... 476s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 476s Setting up bpftool (7.6.0+6.14.0-10.10) ... 476s Setting up libestr0:amd64 (0.1.11-2) ... 476s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 476s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 476s Setting up dosfstools (4.2-1.2) ... 476s Setting up rsyslog (8.2412.0-2ubuntu2) ... 476s info: The user `syslog' is already a member of `adm'. 478s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 478s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 478s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 478s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 478s Setting up systemd (257.3-1ubuntu3) ... 478s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 478s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 478s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 478s Setting up libparted2t64:amd64 (3.6-5) ... 478s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 478s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 478s Setting up linux-headers-generic (6.14.0-10.10) ... 478s Setting up libjemalloc2:amd64 (5.3.0-3) ... 478s Setting up locales (2.41-1ubuntu1) ... 478s Installing new version of config file /etc/locale.alias ... 479s Generating locales (this might take a while)... 480s en_US.UTF-8... done 480s Generation complete. 480s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 480s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 480s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 481s Installing new version of config file /etc/apparmor.d/fusermount3 ... 481s Installing new version of config file /etc/apparmor.d/lsusb ... 481s Installing new version of config file /etc/apparmor.d/openvpn ... 482s Reloading AppArmor profiles 483s Setting up libftdi1-2:amd64 (1.5-8build1) ... 483s Setting up libglib2.0-data (2.84.0-1) ... 483s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 483s Setting up libncurses6:amd64 (6.5+20250216-2) ... 483s Setting up strace (6.13+ds-1ubuntu1) ... 483s Setting up xz-utils (5.6.4-1) ... 483s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 484s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 484s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 484s Setting up udev (257.3-1ubuntu3) ... 485s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 487s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 487s Setting up libpci3:amd64 (1:3.13.0-2) ... 487s Setting up whiptail (0.52.24-4ubuntu2) ... 487s Setting up python-apt-common (2.9.9build1) ... 487s Setting up pnp.ids (0.393-3) ... 487s Setting up libnl-3-200:amd64 (3.7.0-1) ... 487s Setting up python3.13-minimal (3.13.2-2) ... 487s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ... 487s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 487s Setting up libc-dev-bin (2.41-1ubuntu1) ... 487s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 487s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 487s Setting up rsync (3.4.1+ds1-3) ... 488s rsync.service is a disabled or a static unit not running, not starting it. 488s Setting up python3.13-gdbm (3.13.2-2) ... 488s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 488s Setting up systemd-resolved (257.3-1ubuntu3) ... 489s Setting up initramfs-tools-bin (0.146ubuntu1) ... 489s Setting up ncurses-term (6.5+20250216-2) ... 489s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 489s Setting up libpython3.13:amd64 (3.13.2-2) ... 489s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 489s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 489s Setting up systemd-sysv (257.3-1ubuntu3) ... 489s Setting up linux-headers-virtual (6.14.0-10.10) ... 489s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 489s Setting up python3.13 (3.13.2-2) ... 489s Setting up htop (3.4.0-2) ... 489s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 491s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 491s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 491s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 491s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 491s Setting up parted (3.6-5) ... 491s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ... 491s Setting up python3 (3.13.2-2) ... 492s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ... 492s Setting up python3-markupsafe (2.1.5-1build4) ... 492s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 494s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 494s Setting up hwdata (0.393-3) ... 494s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 494s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 494s No schema files found: doing nothing. 494s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 494s Setting up linux-perf (6.14.0-10.10) ... 494s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 494s Setting up pciutils (1:3.13.0-2) ... 494s Setting up python3-rpds-py (0.21.0-2ubuntu2) ... 494s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 494s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 494s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 494s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 494s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 494s Setting up curl (8.12.1-3ubuntu1) ... 494s Setting up linux-image-virtual (6.14.0-10.10) ... 494s Setting up initramfs-tools-core (0.146ubuntu1) ... 494s Setting up linux-tools-common (6.14.0-10.10) ... 494s Setting up python3-systemd (235-1build6) ... 494s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 494s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 494s Setting up linux-image-generic (6.14.0-10.10) ... 494s Setting up python3-dbus (1.3.2-5build5) ... 495s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 495s Setting up initramfs-tools (0.146ubuntu1) ... 495s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 495s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 495s update-initramfs: deferring update (trigger activated) 495s Setting up linux-generic (6.14.0-10.10) ... 495s Setting up ubuntu-minimal (1.549) ... 495s Setting up python3-apt (2.9.9build1) ... 495s Setting up python3-bcrypt (4.2.0-2.1build1) ... 495s Setting up python3-yaml (6.0.2-1build2) ... 495s Setting up libfwupd3:amd64 (2.0.6-4) ... 495s Setting up python3-lazr.uri (1.0.6-6) ... 495s Setting up binutils (2.44-3ubuntu1) ... 495s Setting up ubuntu-standard (1.549) ... 495s Setting up cloud-init-base (25.1-0ubuntu3) ... 497s Setting up linux-virtual (6.14.0-10.10) ... 497s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 497s Setting up python3-gi (3.50.0-4build1) ... 497s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 497s Setting up fwupd (2.0.6-4) ... 497s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 497s fwupd.service is a disabled or a static unit not running, not starting it. 497s Setting up cloud-init (25.1-0ubuntu3) ... 497s Processing triggers for man-db (2.13.0-1) ... 499s Processing triggers for dbus (1.16.2-1ubuntu1) ... 499s Processing triggers for shared-mime-info (2.4-5) ... 499s Warning: program compiled against libxml 212 using older 209 499s Processing triggers for libc-bin (2.41-1ubuntu1) ... 499s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 499s /etc/kernel/postinst.d/initramfs-tools: 499s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 500s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 510s /etc/kernel/postinst.d/zz-update-grub: 510s Sourcing file `/etc/default/grub' 510s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 510s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 510s Generating grub configuration file ... 510s Found linux image: /boot/vmlinuz-6.14.0-10-generic 510s Found initrd image: /boot/initrd.img-6.14.0-10-generic 510s Found linux image: /boot/vmlinuz-6.12.0-16-generic 510s Found initrd image: /boot/initrd.img-6.12.0-16-generic 510s Found linux image: /boot/vmlinuz-6.11.0-8-generic 511s Found initrd image: /boot/initrd.img-6.11.0-8-generic 511s Warning: os-prober will not be executed to detect other bootable partitions. 511s Systems on them will not be added to the GRUB boot configuration. 511s Check GRUB_DISABLE_OS_PROBER documentation entry. 511s Adding boot menu entry for UEFI Firmware Settings ... 511s done 511s Processing triggers for initramfs-tools (0.146ubuntu1) ... 511s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 511s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 523s Reading package lists... 523s Building dependency tree... 523s Reading state information... 523s Solving dependencies... 523s The following packages will be REMOVED: 523s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 523s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 523s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 523s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic* 523s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic* 523s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8* 523s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 523s linux-tools-6.12.0-16-generic* 524s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded. 524s After this operation, 545 MB disk space will be freed. 524s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 524s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 524s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 524s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 524s Removing libpython3.12t64:amd64 (3.12.9-1) ... 524s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 524s Removing libnsl2:amd64 (1.3.0-3build3) ... 524s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 524s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 525s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 527s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 527s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 529s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 530s /etc/kernel/postrm.d/initramfs-tools: 530s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 530s /etc/kernel/postrm.d/zz-update-grub: 530s Sourcing file `/etc/default/grub' 530s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 530s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 530s Generating grub configuration file ... 530s Found linux image: /boot/vmlinuz-6.14.0-10-generic 530s Found initrd image: /boot/initrd.img-6.14.0-10-generic 530s Found linux image: /boot/vmlinuz-6.12.0-16-generic 530s Found initrd image: /boot/initrd.img-6.12.0-16-generic 530s Warning: os-prober will not be executed to detect other bootable partitions. 530s Systems on them will not be added to the GRUB boot configuration. 530s Check GRUB_DISABLE_OS_PROBER documentation entry. 530s Adding boot menu entry for UEFI Firmware Settings ... 530s done 530s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ... 530s W: Removing the running kernel 531s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 531s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 531s /etc/kernel/postrm.d/initramfs-tools: 531s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic 531s /etc/kernel/postrm.d/zz-update-grub: 531s Sourcing file `/etc/default/grub' 531s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 531s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 531s Generating grub configuration file ... 531s Found linux image: /boot/vmlinuz-6.14.0-10-generic 531s Found initrd image: /boot/initrd.img-6.14.0-10-generic 531s Warning: os-prober will not be executed to detect other bootable partitions. 531s Systems on them will not be added to the GRUB boot configuration. 531s Check GRUB_DISABLE_OS_PROBER documentation entry. 531s Adding boot menu entry for UEFI Firmware Settings ... 531s done 531s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 531s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 533s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 533s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 533s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 533s Processing triggers for libc-bin (2.41-1ubuntu1) ... 533s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76972 files and directories currently installed.) 533s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 534s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 534s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 534s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 534s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed 534s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 534s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ... 534s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty 534s autopkgtest [22:38:29]: upgrading testbed (apt dist-upgrade and autopurge) 534s Reading package lists... 534s Building dependency tree... 534s Reading state information... 535s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 535s Starting 2 pkgProblemResolver with broken count: 0 535s Done 535s Entering ResolveByKeep 535s 536s Calculating upgrade... 536s The following packages will be upgraded: 536s libc-bin libc-dev-bin libc6 libc6-dev locales 536s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 536s Need to get 10.5 MB of archives. 536s After this operation, 1024 B of additional disk space will be used. 536s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 536s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 536s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 536s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 536s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 537s Preconfiguring packages ... 537s Fetched 10.5 MB in 1s (11.6 MB/s) 537s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 537s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 537s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 537s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 537s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 537s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 537s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 538s Setting up libc6:amd64 (2.41-1ubuntu2) ... 538s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 538s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 538s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 538s Setting up libc-bin (2.41-1ubuntu2) ... 538s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 538s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 538s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 538s Setting up locales (2.41-1ubuntu2) ... 539s Generating locales (this might take a while)... 541s en_US.UTF-8... done 541s Generation complete. 541s Setting up libc-dev-bin (2.41-1ubuntu2) ... 541s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 541s Processing triggers for man-db (2.13.0-1) ... 541s Processing triggers for systemd (257.3-1ubuntu3) ... 542s Reading package lists... 542s Building dependency tree... 542s Reading state information... 543s Starting pkgProblemResolver with broken count: 0 543s Starting 2 pkgProblemResolver with broken count: 0 543s Done 543s Solving dependencies... 543s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 543s autopkgtest [22:38:38]: rebooting testbed after setup commands that affected boot 572s Reading package lists... 573s Building dependency tree... 573s Reading state information... 573s Starting pkgProblemResolver with broken count: 0 573s Starting 2 pkgProblemResolver with broken count: 0 573s Done 574s The following NEW packages will be installed: 574s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 574s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 574s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-14 574s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 574s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gdal-data gdal-plugins gfortran 574s gfortran-14 gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu 574s icu-devtools javascript-common libabsl20230802 libaec0 libaom3 574s libarmadillo14 libarpack2t64 libasan8 libavif16 libblas-dev libblas3 574s libblosc1 libbz2-dev libcairo2 libcc1-0 libcfitsio10t64 libdatrie1 libdav1d7 574s libde265-0 libdeflate-dev libdeflate0 libfontconfig1 libfreexl1 libfyba0t64 574s libgav1-1 libgcc-14-dev libgdal36 libgeos-c1t64 libgeos3.13.1 libgeotiff5 574s libgfortran-14-dev libgfortran5 libgif7 libgomp1 libgpgmepp6t64 574s libgraphite2-3 libharfbuzz0b libhdf4-0-alt libhdf5-310 libhdf5-hl-310 574s libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libhwasan0 libice6 574s libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 574s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 574s libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 574s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 574s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 574s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 574s libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack-dev liblapack3 574s liblcms2-2 liblerc4 liblsan0 libltdl7 liblua5.4-0 liblzma-dev libminizip1t64 574s libmpc3 libmysqlclient24 libncurses-dev libnetcdf22 libodbc2 libodbcinst2 574s libogdi4.1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 574s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 574s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpoppler147 libpq5 574s libproj25 libqhull-r8.0 libquadmath0 librav1e0.7 libreadline-dev librttopo1 574s libsharpyuv0 libsm6 libsnappy1v5 libspatialite8t64 libstdc++-14-dev 574s libsvtav1enc2 libsz2 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev 574s libtk8.6 libtsan2 libubsan1 libudunits2-0 libudunits2-data liburiparser1 574s libwebp7 libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 574s libxss1 libxt6t64 libyuv0 littler mysql-common node-bootstrap-sass 574s node-html5shiv node-normalize.css pandoc pandoc-data pkg-r-autopkgtest 574s pkgconf pkgconf-bin proj-data r-base-core r-base-dev r-cran-abind 574s r-cran-askpass r-cran-base64enc r-cran-bit r-cran-bit64 r-cran-blob 574s r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr r-cran-class 574s r-cran-classint r-cran-cli r-cran-colorspace r-cran-commonmark r-cran-covr 574s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-deldir r-cran-desc 574s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-evaluate 574s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome r-cran-fs 574s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-goftest r-cran-gtable 574s r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-isoband 574s r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth r-cran-knitr 574s r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle 574s r-cran-littler r-cran-lwgeom r-cran-magrittr r-cran-maps r-cran-mass 574s r-cran-matrix r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell 574s r-cran-nlme r-cran-openssl r-cran-pbapply r-cran-pillar r-cran-pkgbuild 574s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr 574s r-cran-polyclip r-cran-praise r-cran-processx r-cran-promises r-cran-proxy 574s r-cran-ps r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-raster 574s r-cran-rcolorbrewer r-cran-rcpp r-cran-rex r-cran-rlang r-cran-rmarkdown 574s r-cran-rpart r-cran-rpostgresql r-cran-rprojroot r-cran-rsqlite r-cran-s2 574s r-cran-sass r-cran-scales r-cran-sf r-cran-shiny r-cran-sourcetools 574s r-cran-sp r-cran-spatstat r-cran-spatstat.data r-cran-spatstat.explore 574s r-cran-spatstat.geom r-cran-spatstat.linnet r-cran-spatstat.model 574s r-cran-spatstat.random r-cran-spatstat.sparse r-cran-spatstat.univar 574s r-cran-spatstat.utils r-cran-stars r-cran-stringi r-cran-stringr 574s r-cran-survival r-cran-sys r-cran-tensor r-cran-terra r-cran-testthat 574s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-units 574s r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-waldo r-cran-withr 574s r-cran-wk r-cran-xfun r-cran-xtable r-cran-yaml unixodbc-common unzip 574s x11-common xdg-utils zip zlib1g-dev 574s 0 upgraded, 312 newly installed, 0 to remove and 0 not upgraded. 574s Need to get 345 MB of archives. 574s After this operation, 1058 MB of additional disk space will be used. 574s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 574s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 574s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 575s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 575s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 575s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 575s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 575s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 575s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 575s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 575s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 575s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 575s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 576s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 576s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 576s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 576s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 577s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 577s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 577s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 577s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 578s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 579s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 579s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 579s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 579s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 579s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 579s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 579s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 579s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 579s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 579s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 579s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 579s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 579s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 579s Get:36 http://ftpmaster.internal/ubuntu plucky/universe amd64 gdal-data all 3.10.2+dfsg-1build3 [269 kB] 579s Get:37 http://ftpmaster.internal/ubuntu plucky/universe amd64 gdal-plugins amd64 3.10.2+dfsg-1build3 [25.7 kB] 579s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 579s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 579s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 580s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 580s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 580s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 580s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 580s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 12 [5216 B] 580s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libabsl20230802 amd64 20230802.1-4.2 [567 kB] 580s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 580s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libaom3 amd64 3.12.0-1 [2742 kB] 580s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 580s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 580s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 libarpack2t64 amd64 3.9.1-4 [120 kB] 580s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 libarmadillo14 amd64 1:14.2.3+dfsg-1 [105 kB] 580s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 libdav1d7 amd64 1.5.1-1 [743 kB] 580s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgav1-1 amd64 0.19.0-3 [697 kB] 580s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 librav1e0.7 amd64 0.7.1-9 [1025 kB] 580s Get:56 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2686 kB] 581s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 581s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 581s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libyuv0 amd64 0.0.1904.20250204-1 [354 kB] 581s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 libavif16 amd64 1.2.0-1ubuntu1 [140 kB] 581s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 581s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libsnappy1v5 amd64 1.2.1-1 [30.4 kB] 581s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 libblosc1 amd64 1.21.5+ds-1build1 [36.2 kB] 581s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 581s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 581s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 581s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 581s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 581s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 581s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcfitsio10t64 amd64 4.5.0-5 [629 kB] 581s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 581s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libde265-0 amd64 1.0.15-1build5 [285 kB] 581s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 581s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 581s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfyba0t64 amd64 4.1.1-11build1 [119 kB] 581s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [22.9 kB] 581s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfreexl1 amd64 2.0.0-1build2 [41.7 kB] 581s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeos3.13.1 amd64 3.13.1-1 [1017 kB] 581s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeos-c1t64 amd64 3.13.1-1 [103 kB] 581s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 proj-data all 9.5.1-1 [7924 kB] 581s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 581s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 581s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 581s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 581s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 581s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 libproj25 amd64 9.5.1-1 [1499 kB] 581s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeotiff5 amd64 1.7.4-1 [60.2 kB] 581s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libgif7 amd64 5.2.2-1ubuntu2 [36.0 kB] 581s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 581s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf4-0-alt amd64 4.3.0-1 [285 kB] 581s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 582s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-aomdec amd64 1.19.7-1 [11.6 kB] 582s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-libde265 amd64 1.19.7-1 [9060 B] 582s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif1 amd64 1.19.7-1 [428 kB] 582s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 liburiparser1 amd64 0.9.8+dfsg-2 [46.8 kB] 582s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmlbase1t64 amd64 1.3.0-12build1 [49.9 kB] 582s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmldom1t64 amd64 1.3.0-12build1 [156 kB] 582s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmlengine1t64 amd64 1.3.0-12build1 [71.4 kB] 582s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 mysql-common all 5.8+1.1.1ubuntu1 [6922 B] 582s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libmysqlclient24 amd64 8.4.4-0ubuntu2 [1257 kB] 582s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 582s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf22 amd64 1:4.9.3-1 [574 kB] 582s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libltdl7 amd64 2.5.4-4 [46.5 kB] 582s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libodbc2 amd64 2.3.12-2ubuntu1 [186 kB] 582s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 unixodbc-common all 2.3.12-2ubuntu1 [9044 B] 582s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libodbcinst2 amd64 2.3.12-2ubuntu1 [34.1 kB] 582s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 libogdi4.1 amd64 4.1.1+ds-5 [219 kB] 582s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.3-2 [218 kB] 582s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgmepp6t64 amd64 1.24.2-1ubuntu2 [126 kB] 582s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 582s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libpoppler147 amd64 25.03.0-2 [1295 kB] 582s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libpq5 amd64 17.4-1 [155 kB] 582s Get:113 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 582s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 librttopo1 amd64 1.1.0-4 [205 kB] 582s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 libspatialite8t64 amd64 5.1.0-3build1 [1919 kB] 582s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3build1 [1028 kB] 583s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgdal36 amd64 3.10.2+dfsg-1build3 [10.3 MB] 583s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 583s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 583s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 583s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 583s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 583s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 584s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 584s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 584s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 584s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 584s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 584s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 584s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 584s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 584s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 584s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 584s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 584s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 584s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 584s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 584s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 584s Get:139 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 584s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 584s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 584s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 584s Get:143 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 584s Get:144 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 584s Get:145 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 584s Get:146 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 584s Get:147 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 584s Get:148 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 584s Get:149 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 584s Get:150 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 584s Get:151 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 584s Get:152 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 584s Get:153 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 584s Get:154 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 584s Get:155 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 584s Get:156 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 584s Get:157 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 584s Get:158 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 584s Get:159 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 584s Get:160 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 584s Get:161 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 584s Get:162 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 584s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 libudunits2-data all 2.2.28-7build1 [19.4 kB] 584s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 libudunits2-0 amd64 2.2.28-7build1 [54.1 kB] 584s Get:165 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 584s Get:166 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 584s Get:167 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 584s Get:168 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 584s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 586s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 586s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 586s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 586s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 586s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 586s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 586s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 588s Get:177 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 588s Get:178 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 588s Get:179 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 588s Get:180 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 588s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 588s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 588s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 588s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 588s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 588s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 588s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB] 588s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit64 amd64 4.6.0-1-1ubuntu2 [501 kB] 588s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 588s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 588s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 588s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 588s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 588s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 588s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 588s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 588s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 588s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 588s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 588s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 588s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 588s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 588s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 588s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 589s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 589s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 589s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 589s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 589s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB] 589s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 589s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 589s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 589s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 589s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 589s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-e1071 amd64 1.7-16-1 [565 kB] 589s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernsmooth amd64 2.23-26-1 [94.5 kB] 589s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-classint amd64 0.4-11+dfsg-1 [108 kB] 589s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 589s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 589s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 589s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rex all 1.2.1-1 [129 kB] 589s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 6.2.1+dfsg-1ubuntu1 [197 kB] 589s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 590s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 590s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 590s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 590s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 590s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-covr amd64 3.6.4+dfsg-1 [303 kB] 590s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB] 590s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 590s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 590s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 590s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 590s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 590s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 590s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 590s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 590s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 590s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 590s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 590s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 590s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 590s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 590s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 590s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 590s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 590s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 590s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 590s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.167-1 [2320 kB] 591s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 591s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 591s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 591s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB] 591s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 591s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 591s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 591s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 591s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-goftest amd64 1.2-3-1 [59.5 kB] 591s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 591s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 591s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 591s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 591s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 591s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 591s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 591s Get:266 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 591s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 591s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-units amd64 0.8-5+dfsg-1 [275 kB] 591s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-wk amd64 0.9.4-1 [1791 kB] 592s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-s2 amd64 1.1.7-1 [2023 kB] 592s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sf amd64 1.0-19+dfsg-1 [3313 kB] 592s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lwgeom amd64 0.2-14-1 [463 kB] 592s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-maps amd64 3.4.2.1-1 [2352 kB] 592s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 592s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 592s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-2 [125 kB] 592s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 592s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 592s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB] 592s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 592s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB] 592s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sp amd64 1:2.2-0+dfsg-1 [1444 kB] 592s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-terra amd64 1.8-29-1 [4306 kB] 592s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-raster amd64 3.6-31-1 [3176 kB] 592s Get:285 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 592s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 592s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 592s Get:288 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 592s Get:289 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 592s Get:290 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 593s Get:291 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 593s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB] 593s Get:293 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB] 593s Get:294 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rpostgresql amd64 0.7-7+dfsg-1 [365 kB] 593s Get:295 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB] 593s Get:296 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.utils amd64 3.1-2-1 [383 kB] 593s Get:297 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.data all 3.1-4-1 [4047 kB] 593s Get:298 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.univar amd64 3.1-1-1build1 [310 kB] 593s Get:299 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.geom amd64 3.3-5-1 [3959 kB] 594s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.random amd64 3.3-2-1 [1172 kB] 594s Get:301 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tensor all 1.5-4 [15.7 kB] 594s Get:302 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.sparse amd64 3.1-0-1 [221 kB] 594s Get:303 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.explore amd64 3.3-4-1 [3347 kB] 594s Get:304 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.model amd64 3.3-4-1 [3397 kB] 595s Get:305 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.linnet amd64 3.2-5-1 [1509 kB] 595s Get:306 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat amd64 3.3-1-1 [4121 kB] 595s Get:307 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stars all 0.6-8-1 [4414 kB] 595s Get:308 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB] 595s Get:309 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 595s Get:310 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-2 [150 kB] 595s Get:311 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 596s Get:312 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 596s Preconfiguring packages ... 596s Fetched 345 MB in 22s (15.6 MB/s) 597s Selecting previously unselected package libisl23:amd64. 597s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 597s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 597s Unpacking libisl23:amd64 (0.27-1) ... 597s Selecting previously unselected package libmpc3:amd64. 597s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 597s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 597s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 597s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 597s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 597s Selecting previously unselected package cpp-14. 597s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 597s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 597s Selecting previously unselected package cpp-x86-64-linux-gnu. 597s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 597s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 597s Selecting previously unselected package cpp. 597s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 597s Unpacking cpp (4:14.2.0-1ubuntu1) ... 597s Selecting previously unselected package libcc1-0:amd64. 597s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 597s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 597s Selecting previously unselected package libgomp1:amd64. 597s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 597s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 597s Selecting previously unselected package libitm1:amd64. 597s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_amd64.deb ... 597s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 597s Selecting previously unselected package libasan8:amd64. 597s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_amd64.deb ... 597s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 597s Selecting previously unselected package liblsan0:amd64. 597s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 597s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 597s Selecting previously unselected package libtsan2:amd64. 597s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 597s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 597s Selecting previously unselected package libubsan1:amd64. 597s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_amd64.deb ... 597s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ... 597s Selecting previously unselected package libhwasan0:amd64. 597s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_amd64.deb ... 597s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ... 597s Selecting previously unselected package libquadmath0:amd64. 597s Preparing to unpack .../014-libquadmath0_15-20250222-0ubuntu1_amd64.deb ... 597s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ... 597s Selecting previously unselected package libgcc-14-dev:amd64. 597s Preparing to unpack .../015-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ... 597s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 598s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 598s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 598s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 598s Selecting previously unselected package gcc-14. 598s Preparing to unpack .../017-gcc-14_14.2.0-17ubuntu3_amd64.deb ... 598s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 598s Selecting previously unselected package gcc-x86-64-linux-gnu. 598s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 598s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 598s Selecting previously unselected package gcc. 598s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 598s Unpacking gcc (4:14.2.0-1ubuntu1) ... 598s Selecting previously unselected package libstdc++-14-dev:amd64. 598s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ... 598s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 598s Selecting previously unselected package g++-14-x86-64-linux-gnu. 598s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 598s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 598s Selecting previously unselected package g++-14. 598s Preparing to unpack .../022-g++-14_14.2.0-17ubuntu3_amd64.deb ... 598s Unpacking g++-14 (14.2.0-17ubuntu3) ... 598s Selecting previously unselected package g++-x86-64-linux-gnu. 598s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 598s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 598s Selecting previously unselected package g++. 598s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 598s Unpacking g++ (4:14.2.0-1ubuntu1) ... 598s Selecting previously unselected package build-essential. 598s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ... 598s Unpacking build-essential (12.10ubuntu1) ... 598s Selecting previously unselected package dctrl-tools. 598s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ... 598s Unpacking dctrl-tools (2.24-3build3) ... 599s Selecting previously unselected package fonts-dejavu-mono. 599s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ... 599s Unpacking fonts-dejavu-mono (2.37-8) ... 599s Selecting previously unselected package fonts-dejavu-core. 599s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ... 599s Unpacking fonts-dejavu-core (2.37-8) ... 599s Selecting previously unselected package fontconfig-config. 599s Preparing to unpack .../029-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 599s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 599s Selecting previously unselected package libfontconfig1:amd64. 599s Preparing to unpack .../030-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 599s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 599s Selecting previously unselected package fontconfig. 599s Preparing to unpack .../031-fontconfig_2.15.0-2ubuntu1_amd64.deb ... 599s Unpacking fontconfig (2.15.0-2ubuntu1) ... 599s Selecting previously unselected package fonts-font-awesome. 599s Preparing to unpack .../032-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 599s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 599s Selecting previously unselected package fonts-glyphicons-halflings. 599s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 599s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 599s Selecting previously unselected package fonts-mathjax. 599s Preparing to unpack .../034-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 599s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 599s Selecting previously unselected package gdal-data. 599s Preparing to unpack .../035-gdal-data_3.10.2+dfsg-1build3_all.deb ... 599s Unpacking gdal-data (3.10.2+dfsg-1build3) ... 599s Selecting previously unselected package gdal-plugins:amd64. 599s Preparing to unpack .../036-gdal-plugins_3.10.2+dfsg-1build3_amd64.deb ... 599s Unpacking gdal-plugins:amd64 (3.10.2+dfsg-1build3) ... 599s Selecting previously unselected package libgfortran5:amd64. 599s Preparing to unpack .../037-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 599s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 599s Selecting previously unselected package libgfortran-14-dev:amd64. 599s Preparing to unpack .../038-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 599s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 599s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 599s Preparing to unpack .../039-gfortran-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 599s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 599s Selecting previously unselected package gfortran-14. 599s Preparing to unpack .../040-gfortran-14_14.2.0-17ubuntu3_amd64.deb ... 599s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 599s Selecting previously unselected package gfortran-x86-64-linux-gnu. 599s Preparing to unpack .../041-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 599s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 599s Selecting previously unselected package gfortran. 600s Preparing to unpack .../042-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ... 600s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 600s Selecting previously unselected package icu-devtools. 600s Preparing to unpack .../043-icu-devtools_76.1-1ubuntu2_amd64.deb ... 600s Unpacking icu-devtools (76.1-1ubuntu2) ... 600s Selecting previously unselected package javascript-common. 600s Preparing to unpack .../044-javascript-common_12_all.deb ... 600s Unpacking javascript-common (12) ... 600s Selecting previously unselected package libabsl20230802:amd64. 600s Preparing to unpack .../045-libabsl20230802_20230802.1-4.2_amd64.deb ... 600s Unpacking libabsl20230802:amd64 (20230802.1-4.2) ... 600s Selecting previously unselected package libaec0:amd64. 600s Preparing to unpack .../046-libaec0_1.1.3-1_amd64.deb ... 600s Unpacking libaec0:amd64 (1.1.3-1) ... 600s Selecting previously unselected package libaom3:amd64. 600s Preparing to unpack .../047-libaom3_3.12.0-1_amd64.deb ... 600s Unpacking libaom3:amd64 (3.12.0-1) ... 600s Selecting previously unselected package libblas3:amd64. 600s Preparing to unpack .../048-libblas3_3.12.1-2_amd64.deb ... 600s Unpacking libblas3:amd64 (3.12.1-2) ... 600s Selecting previously unselected package liblapack3:amd64. 600s Preparing to unpack .../049-liblapack3_3.12.1-2_amd64.deb ... 600s Unpacking liblapack3:amd64 (3.12.1-2) ... 600s Selecting previously unselected package libarpack2t64:amd64. 600s Preparing to unpack .../050-libarpack2t64_3.9.1-4_amd64.deb ... 600s Unpacking libarpack2t64:amd64 (3.9.1-4) ... 600s Selecting previously unselected package libarmadillo14. 600s Preparing to unpack .../051-libarmadillo14_1%3a14.2.3+dfsg-1_amd64.deb ... 600s Unpacking libarmadillo14 (1:14.2.3+dfsg-1) ... 600s Selecting previously unselected package libdav1d7:amd64. 600s Preparing to unpack .../052-libdav1d7_1.5.1-1_amd64.deb ... 600s Unpacking libdav1d7:amd64 (1.5.1-1) ... 600s Selecting previously unselected package libgav1-1:amd64. 600s Preparing to unpack .../053-libgav1-1_0.19.0-3_amd64.deb ... 600s Unpacking libgav1-1:amd64 (0.19.0-3) ... 600s Selecting previously unselected package librav1e0.7:amd64. 600s Preparing to unpack .../054-librav1e0.7_0.7.1-9_amd64.deb ... 600s Unpacking librav1e0.7:amd64 (0.7.1-9) ... 600s Selecting previously unselected package libsvtav1enc2:amd64. 600s Preparing to unpack .../055-libsvtav1enc2_2.3.0+dfsg-1_amd64.deb ... 600s Unpacking libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... 600s Selecting previously unselected package libjpeg-turbo8:amd64. 600s Preparing to unpack .../056-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 600s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 600s Selecting previously unselected package libjpeg8:amd64. 600s Preparing to unpack .../057-libjpeg8_8c-2ubuntu11_amd64.deb ... 600s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 600s Selecting previously unselected package libyuv0:amd64. 600s Preparing to unpack .../058-libyuv0_0.0.1904.20250204-1_amd64.deb ... 600s Unpacking libyuv0:amd64 (0.0.1904.20250204-1) ... 600s Selecting previously unselected package libavif16:amd64. 600s Preparing to unpack .../059-libavif16_1.2.0-1ubuntu1_amd64.deb ... 600s Unpacking libavif16:amd64 (1.2.0-1ubuntu1) ... 600s Selecting previously unselected package libblas-dev:amd64. 600s Preparing to unpack .../060-libblas-dev_3.12.1-2_amd64.deb ... 600s Unpacking libblas-dev:amd64 (3.12.1-2) ... 600s Selecting previously unselected package libsnappy1v5:amd64. 600s Preparing to unpack .../061-libsnappy1v5_1.2.1-1_amd64.deb ... 600s Unpacking libsnappy1v5:amd64 (1.2.1-1) ... 600s Selecting previously unselected package libblosc1:amd64. 600s Preparing to unpack .../062-libblosc1_1.21.5+ds-1build1_amd64.deb ... 600s Unpacking libblosc1:amd64 (1.21.5+ds-1build1) ... 600s Selecting previously unselected package libbz2-dev:amd64. 600s Preparing to unpack .../063-libbz2-dev_1.0.8-6_amd64.deb ... 600s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 600s Selecting previously unselected package libpixman-1-0:amd64. 600s Preparing to unpack .../064-libpixman-1-0_0.44.0-3_amd64.deb ... 600s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 600s Selecting previously unselected package libxcb-render0:amd64. 600s Preparing to unpack .../065-libxcb-render0_1.17.0-2_amd64.deb ... 600s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 600s Selecting previously unselected package libxcb-shm0:amd64. 600s Preparing to unpack .../066-libxcb-shm0_1.17.0-2_amd64.deb ... 600s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 600s Selecting previously unselected package libxrender1:amd64. 600s Preparing to unpack .../067-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 600s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 600s Selecting previously unselected package libcairo2:amd64. 601s Preparing to unpack .../068-libcairo2_1.18.2-2_amd64.deb ... 601s Unpacking libcairo2:amd64 (1.18.2-2) ... 601s Selecting previously unselected package libcfitsio10t64:amd64. 601s Preparing to unpack .../069-libcfitsio10t64_4.5.0-5_amd64.deb ... 601s Unpacking 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libkmldom1t64:amd64. 602s Preparing to unpack .../096-libkmldom1t64_1.3.0-12build1_amd64.deb ... 602s Unpacking libkmldom1t64:amd64 (1.3.0-12build1) ... 602s Selecting previously unselected package libkmlengine1t64:amd64. 602s Preparing to unpack .../097-libkmlengine1t64_1.3.0-12build1_amd64.deb ... 602s Unpacking libkmlengine1t64:amd64 (1.3.0-12build1) ... 602s Selecting previously unselected package mysql-common. 602s Preparing to unpack .../098-mysql-common_5.8+1.1.1ubuntu1_all.deb ... 602s Unpacking mysql-common (5.8+1.1.1ubuntu1) ... 602s Selecting previously unselected package libmysqlclient24:amd64. 602s Preparing to unpack .../099-libmysqlclient24_8.4.4-0ubuntu2_amd64.deb ... 602s Unpacking libmysqlclient24:amd64 (8.4.4-0ubuntu2) ... 602s Selecting previously unselected package libhdf5-hl-310:amd64. 602s Preparing to unpack .../100-libhdf5-hl-310_1.14.5+repack-3_amd64.deb ... 602s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3) ... 602s Selecting previously unselected package libnetcdf22:amd64. 602s Preparing to unpack .../101-libnetcdf22_1%3a4.9.3-1_amd64.deb ... 602s Unpacking libnetcdf22:amd64 (1:4.9.3-1) ... 602s Selecting previously unselected package libltdl7:amd64. 602s Preparing to unpack .../102-libltdl7_2.5.4-4_amd64.deb ... 602s Unpacking libltdl7:amd64 (2.5.4-4) ... 602s Selecting previously unselected package libodbc2:amd64. 602s Preparing to unpack .../103-libodbc2_2.3.12-2ubuntu1_amd64.deb ... 602s Unpacking libodbc2:amd64 (2.3.12-2ubuntu1) ... 602s Selecting previously unselected package unixodbc-common. 602s Preparing to unpack .../104-unixodbc-common_2.3.12-2ubuntu1_all.deb ... 602s Unpacking unixodbc-common (2.3.12-2ubuntu1) ... 602s Selecting previously unselected package libodbcinst2:amd64. 602s Preparing to unpack .../105-libodbcinst2_2.3.12-2ubuntu1_amd64.deb ... 602s Unpacking libodbcinst2:amd64 (2.3.12-2ubuntu1) ... 602s Selecting previously unselected package libogdi4.1:amd64. 602s Preparing to unpack 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602s Selecting previously unselected package libqhull-r8.0:amd64. 602s Preparing to unpack .../112-libqhull-r8.0_2020.2-6build1_amd64.deb ... 602s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 602s Selecting previously unselected package librttopo1:amd64. 602s Preparing to unpack .../113-librttopo1_1.1.0-4_amd64.deb ... 602s Unpacking librttopo1:amd64 (1.1.0-4) ... 602s Selecting previously unselected package libspatialite8t64:amd64. 602s Preparing to unpack .../114-libspatialite8t64_5.1.0-3build1_amd64.deb ... 602s Unpacking libspatialite8t64:amd64 (5.1.0-3build1) ... 602s Selecting previously unselected package libxerces-c3.2t64:amd64. 602s Preparing to unpack .../115-libxerces-c3.2t64_3.2.4+debian-1.3build1_amd64.deb ... 602s Unpacking libxerces-c3.2t64:amd64 (3.2.4+debian-1.3build1) ... 602s Selecting previously unselected package libgdal36:amd64. 602s Preparing to unpack .../116-libgdal36_3.10.2+dfsg-1build3_amd64.deb ... 602s Unpacking libgdal36:amd64 (3.10.2+dfsg-1build3) 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previously unselected package libthai0:amd64. 604s Preparing to unpack .../143-libthai0_0.1.29-2build1_amd64.deb ... 604s Unpacking libthai0:amd64 (0.1.29-2build1) ... 604s Selecting previously unselected package libpango-1.0-0:amd64. 604s Preparing to unpack .../144-libpango-1.0-0_1.56.2-1_amd64.deb ... 604s Unpacking libpango-1.0-0:amd64 (1.56.2-1) ... 604s Selecting previously unselected package libpangoft2-1.0-0:amd64. 604s Preparing to unpack .../145-libpangoft2-1.0-0_1.56.2-1_amd64.deb ... 604s Unpacking libpangoft2-1.0-0:amd64 (1.56.2-1) ... 604s Selecting previously unselected package libpangocairo-1.0-0:amd64. 604s Preparing to unpack .../146-libpangocairo-1.0-0_1.56.2-1_amd64.deb ... 604s Unpacking libpangocairo-1.0-0:amd64 (1.56.2-1) ... 604s Selecting previously unselected package libpaper2:amd64. 604s Preparing to unpack .../147-libpaper2_2.2.5-0.3_amd64.deb ... 604s Unpacking libpaper2:amd64 (2.2.5-0.3) ... 604s Selecting previously unselected package libpaper-utils. 604s 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libpkgconf3:amd64 (1.8.1-4) ... 604s Selecting previously unselected package zlib1g-dev:amd64. 604s Preparing to unpack .../154-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 604s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 604s Selecting previously unselected package libpng-dev:amd64. 604s Preparing to unpack .../155-libpng-dev_1.6.47-1_amd64.deb ... 604s Unpacking libpng-dev:amd64 (1.6.47-1) ... 604s Selecting previously unselected package libreadline-dev:amd64. 604s Preparing to unpack .../156-libreadline-dev_8.2-6_amd64.deb ... 604s Unpacking libreadline-dev:amd64 (8.2-6) ... 604s Selecting previously unselected package libsm6:amd64. 604s Preparing to unpack .../157-libsm6_2%3a1.2.4-1_amd64.deb ... 604s Unpacking libsm6:amd64 (2:1.2.4-1) ... 604s Selecting previously unselected package libtcl8.6:amd64. 604s Preparing to unpack .../158-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 604s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 604s Selecting previously unselected package libxft2:amd64. 604s Preparing to unpack .../159-libxft2_2.3.6-1build1_amd64.deb ... 604s Unpacking libxft2:amd64 (2.3.6-1build1) ... 604s Selecting previously unselected package libxss1:amd64. 604s Preparing to unpack .../160-libxss1_1%3a1.2.3-1build3_amd64.deb ... 604s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 604s Selecting previously unselected package libtk8.6:amd64. 604s Preparing to unpack .../161-libtk8.6_8.6.16-1_amd64.deb ... 604s Unpacking libtk8.6:amd64 (8.6.16-1) ... 604s Selecting previously unselected package libudunits2-data. 604s Preparing to unpack .../162-libudunits2-data_2.2.28-7build1_all.deb ... 604s Unpacking libudunits2-data (2.2.28-7build1) ... 605s Selecting previously unselected package libudunits2-0. 605s Preparing to unpack .../163-libudunits2-0_2.2.28-7build1_amd64.deb ... 605s Unpacking libudunits2-0 (2.2.28-7build1) ... 605s Selecting previously unselected package libxt6t64:amd64. 605s Preparing to unpack .../164-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 605s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 605s Selecting previously unselected package zip. 605s Preparing to unpack .../165-zip_3.0-14ubuntu2_amd64.deb ... 605s Unpacking zip (3.0-14ubuntu2) ... 605s Selecting previously unselected package unzip. 605s Preparing to unpack .../166-unzip_6.0-28ubuntu6_amd64.deb ... 605s Unpacking unzip (6.0-28ubuntu6) ... 605s Selecting previously unselected package xdg-utils. 605s Preparing to unpack .../167-xdg-utils_1.2.1-2ubuntu1_all.deb ... 605s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 605s Selecting previously unselected package r-base-core. 605s Preparing to unpack .../168-r-base-core_4.4.3-1_amd64.deb ... 605s Unpacking r-base-core (4.4.3-1) ... 605s Selecting previously unselected package r-cran-littler. 605s Preparing to unpack .../169-r-cran-littler_0.3.20-2_amd64.deb ... 605s Unpacking r-cran-littler (0.3.20-2) ... 605s Selecting previously unselected package littler. 605s Preparing to unpack .../170-littler_0.3.20-2_all.deb ... 605s Unpacking littler (0.3.20-2) ... 605s Selecting previously unselected package node-bootstrap-sass. 605s Preparing to unpack .../171-node-bootstrap-sass_3.4.3-2_all.deb ... 605s Unpacking node-bootstrap-sass (3.4.3-2) ... 605s Selecting previously unselected package node-html5shiv. 605s Preparing to unpack .../172-node-html5shiv_3.7.3+dfsg-5_all.deb ... 605s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 605s Selecting previously unselected package node-normalize.css. 605s Preparing to unpack .../173-node-normalize.css_8.0.1-5_all.deb ... 605s Unpacking node-normalize.css (8.0.1-5) ... 605s Selecting previously unselected package pandoc-data. 605s Preparing to unpack .../174-pandoc-data_3.1.11.1-3build1_all.deb ... 605s Unpacking pandoc-data (3.1.11.1-3build1) ... 605s Selecting previously unselected package pandoc. 605s Preparing to unpack .../175-pandoc_3.1.11.1+ds-2_amd64.deb ... 605s Unpacking pandoc (3.1.11.1+ds-2) ... 606s Selecting previously unselected package liblzma-dev:amd64. 606s Preparing to unpack .../176-liblzma-dev_5.6.4-1_amd64.deb ... 606s Unpacking liblzma-dev:amd64 (5.6.4-1) ... 606s Selecting previously unselected package pkgconf-bin. 606s Preparing to unpack .../177-pkgconf-bin_1.8.1-4_amd64.deb ... 606s Unpacking pkgconf-bin (1.8.1-4) ... 606s Selecting previously unselected package pkgconf:amd64. 606s Preparing to unpack .../178-pkgconf_1.8.1-4_amd64.deb ... 606s Unpacking pkgconf:amd64 (1.8.1-4) ... 606s Selecting previously unselected package libtirpc-dev:amd64. 606s Preparing to unpack .../179-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 606s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 606s Selecting previously unselected package r-base-dev. 606s Preparing to unpack .../180-r-base-dev_4.4.3-1_all.deb ... 606s Unpacking r-base-dev (4.4.3-1) ... 606s Selecting previously unselected package pkg-r-autopkgtest. 606s Preparing to unpack .../181-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 606s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 606s Selecting previously unselected package r-cran-abind. 606s Preparing to unpack .../182-r-cran-abind_1.4-8-1_all.deb ... 606s Unpacking r-cran-abind (1.4-8-1) ... 606s Selecting previously unselected package r-cran-sys. 606s Preparing to unpack .../183-r-cran-sys_3.4.3-1_amd64.deb ... 606s Unpacking r-cran-sys (3.4.3-1) ... 606s Selecting previously unselected package r-cran-askpass. 606s Preparing to unpack .../184-r-cran-askpass_1.2.1-1_amd64.deb ... 606s Unpacking r-cran-askpass (1.2.1-1) ... 606s Selecting previously unselected package r-cran-base64enc. 606s Preparing to unpack .../185-r-cran-base64enc_0.1-3-3_amd64.deb ... 606s Unpacking r-cran-base64enc (0.1-3-3) ... 606s Selecting previously unselected package r-cran-bit. 606s Preparing to unpack .../186-r-cran-bit_4.6.0+dfsg-1_amd64.deb ... 606s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 606s Selecting previously unselected package r-cran-bit64. 606s Preparing to unpack .../187-r-cran-bit64_4.6.0-1-1ubuntu2_amd64.deb ... 606s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 606s Selecting previously unselected package r-cran-rlang. 606s Preparing to unpack .../188-r-cran-rlang_1.1.5-1_amd64.deb ... 606s Unpacking r-cran-rlang (1.1.5-1) ... 606s Selecting previously unselected package r-cran-cli. 606s Preparing to unpack .../189-r-cran-cli_3.6.4-1_amd64.deb ... 606s Unpacking r-cran-cli (3.6.4-1) ... 606s Selecting previously unselected package r-cran-glue. 606s Preparing to unpack .../190-r-cran-glue_1.8.0-1_amd64.deb ... 606s Unpacking r-cran-glue (1.8.0-1) ... 606s Selecting previously unselected package r-cran-lifecycle. 606s Preparing to unpack .../191-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 606s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 607s Selecting previously unselected package r-cran-vctrs. 607s Preparing to unpack .../192-r-cran-vctrs_0.6.5-1_amd64.deb ... 607s Unpacking r-cran-vctrs (0.6.5-1) ... 607s Selecting previously unselected package r-cran-blob. 607s Preparing to unpack .../193-r-cran-blob_1.2.4-1_all.deb ... 607s Unpacking r-cran-blob (1.2.4-1) ... 607s Selecting previously unselected package r-cran-brio. 607s Preparing to unpack .../194-r-cran-brio_1.1.5-1_amd64.deb ... 607s Unpacking r-cran-brio (1.1.5-1) ... 607s Selecting previously unselected package r-cran-fastmap. 607s Preparing to unpack .../195-r-cran-fastmap_1.2.0-1_amd64.deb ... 607s Unpacking r-cran-fastmap (1.2.0-1) ... 607s Selecting previously unselected package r-cran-cachem. 607s Preparing to unpack .../196-r-cran-cachem_1.1.0-1_amd64.deb ... 607s Unpacking r-cran-cachem (1.1.0-1) ... 607s Selecting previously unselected package r-cran-digest. 607s Preparing to unpack .../197-r-cran-digest_0.6.37-1_amd64.deb ... 607s Unpacking r-cran-digest (0.6.37-1) ... 607s Selecting previously unselected package r-cran-htmltools. 607s Preparing to unpack .../198-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 607s Unpacking r-cran-htmltools (0.5.8.1-1) ... 607s Selecting previously unselected package r-cran-jquerylib. 607s Preparing to unpack .../199-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 607s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 607s Selecting previously unselected package r-cran-jsonlite. 607s Preparing to unpack .../200-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 607s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 607s Selecting previously unselected package r-cran-memoise. 607s Preparing to unpack .../201-r-cran-memoise_2.0.1-1_all.deb ... 607s Unpacking r-cran-memoise (2.0.1-1) ... 607s Selecting previously unselected package r-cran-mime. 607s Preparing to unpack .../202-r-cran-mime_0.12-2_amd64.deb ... 607s Unpacking r-cran-mime (0.12-2) ... 607s Selecting previously unselected package r-cran-fs. 607s Preparing to unpack .../203-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 607s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 607s Selecting previously unselected package r-cran-r6. 607s Preparing to unpack .../204-r-cran-r6_2.6.1-1_all.deb ... 607s Unpacking r-cran-r6 (2.6.1-1) ... 607s Selecting previously unselected package r-cran-rappdirs. 607s Preparing to unpack .../205-r-cran-rappdirs_0.3.3-1_amd64.deb ... 607s Unpacking r-cran-rappdirs (0.3.3-1) ... 607s Selecting previously unselected package r-cran-sass. 607s Preparing to unpack .../206-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 607s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 607s Selecting previously unselected package r-cran-bslib. 607s Preparing to unpack .../207-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 607s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 607s Selecting previously unselected package r-cran-ps. 607s Preparing to unpack .../208-r-cran-ps_1.9.0-1_amd64.deb ... 607s Unpacking r-cran-ps (1.9.0-1) ... 607s Selecting previously unselected package r-cran-processx. 607s Preparing to unpack .../209-r-cran-processx_3.8.6-1_amd64.deb ... 607s Unpacking r-cran-processx (3.8.6-1) ... 607s Selecting previously unselected package r-cran-callr. 607s Preparing to unpack .../210-r-cran-callr_3.7.6-1_all.deb ... 607s Unpacking r-cran-callr (3.7.6-1) ... 607s Selecting previously unselected package r-cran-mass. 607s Preparing to unpack .../211-r-cran-mass_7.3-64-1_amd64.deb ... 607s Unpacking r-cran-mass (7.3-64-1) ... 607s Selecting previously unselected package r-cran-class. 607s Preparing to unpack .../212-r-cran-class_7.3-23-1_amd64.deb ... 607s Unpacking r-cran-class (7.3-23-1) ... 607s Selecting previously unselected package r-cran-proxy. 607s Preparing to unpack .../213-r-cran-proxy_0.4-27-1_amd64.deb ... 607s Unpacking r-cran-proxy (0.4-27-1) ... 607s Selecting previously unselected package r-cran-e1071. 607s Preparing to unpack .../214-r-cran-e1071_1.7-16-1_amd64.deb ... 607s Unpacking r-cran-e1071 (1.7-16-1) ... 607s Selecting previously unselected package r-cran-kernsmooth. 607s Preparing to unpack .../215-r-cran-kernsmooth_2.23-26-1_amd64.deb ... 607s Unpacking r-cran-kernsmooth (2.23-26-1) ... 607s Selecting previously unselected package r-cran-classint. 607s Preparing to unpack .../216-r-cran-classint_0.4-11+dfsg-1_amd64.deb ... 607s Unpacking r-cran-classint (0.4-11+dfsg-1) ... 607s Selecting previously unselected package r-cran-colorspace. 607s Preparing to unpack .../217-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ... 607s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 608s Selecting previously unselected package r-cran-commonmark. 608s Preparing to unpack .../218-r-cran-commonmark_1.9.2-2_amd64.deb ... 608s Unpacking r-cran-commonmark (1.9.2-2) ... 608s Selecting previously unselected package r-cran-lazyeval. 608s Preparing to unpack .../219-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 608s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 608s Selecting previously unselected package r-cran-rex. 608s Preparing to unpack .../220-r-cran-rex_1.2.1-1_all.deb ... 608s Unpacking r-cran-rex (1.2.1-1) ... 608s Selecting previously unselected package r-cran-curl. 608s Preparing to unpack .../221-r-cran-curl_6.2.1+dfsg-1ubuntu1_amd64.deb ... 608s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 608s Selecting previously unselected package r-cran-openssl. 608s Preparing to unpack .../222-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 608s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 608s Selecting previously unselected package r-cran-httr. 608s Preparing to unpack .../223-r-cran-httr_1.4.7+dfsg-1_all.deb ... 608s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 608s Selecting previously unselected package r-cran-crayon. 608s Preparing to unpack .../224-r-cran-crayon_1.5.3-1_all.deb ... 608s Unpacking r-cran-crayon (1.5.3-1) ... 608s Selecting previously unselected package r-cran-withr. 608s Preparing to unpack .../225-r-cran-withr_3.0.2+dfsg-1_all.deb ... 608s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 608s Selecting previously unselected package r-cran-yaml. 608s Preparing to unpack .../226-r-cran-yaml_2.3.10-1_amd64.deb ... 608s Unpacking r-cran-yaml (2.3.10-1) ... 608s Selecting previously unselected package r-cran-covr. 608s Preparing to unpack .../227-r-cran-covr_3.6.4+dfsg-1_amd64.deb ... 608s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 608s Selecting previously unselected package r-cran-cpp11. 608s Preparing to unpack .../228-r-cran-cpp11_0.5.2-1_all.deb ... 608s Unpacking r-cran-cpp11 (0.5.2-1) ... 608s Selecting previously unselected package r-cran-dbi. 608s Preparing to unpack .../229-r-cran-dbi_1.2.3-1_all.deb ... 608s Unpacking r-cran-dbi (1.2.3-1) ... 608s Selecting previously unselected package r-cran-deldir. 608s Preparing to unpack .../230-r-cran-deldir_2.0-4-1build1_amd64.deb ... 608s Unpacking r-cran-deldir (2.0-4-1build1) ... 608s Selecting previously unselected package r-cran-desc. 608s Preparing to unpack .../231-r-cran-desc_1.4.3-1_all.deb ... 608s Unpacking r-cran-desc (1.4.3-1) ... 608s Selecting previously unselected package r-cran-diffobj. 608s Preparing to unpack .../232-r-cran-diffobj_0.3.5-1_amd64.deb ... 608s Unpacking r-cran-diffobj (0.3.5-1) ... 608s Selecting previously unselected package r-cran-generics. 608s Preparing to unpack .../233-r-cran-generics_0.1.3-1_all.deb ... 608s Unpacking r-cran-generics (0.1.3-1) ... 608s Selecting previously unselected package r-cran-magrittr. 608s Preparing to unpack .../234-r-cran-magrittr_2.0.3-1_amd64.deb ... 608s Unpacking r-cran-magrittr (2.0.3-1) ... 608s Selecting previously unselected package r-cran-utf8. 608s Preparing to unpack .../235-r-cran-utf8_1.2.4-1_amd64.deb ... 608s Unpacking r-cran-utf8 (1.2.4-1) ... 608s Selecting previously unselected package r-cran-pillar. 608s Preparing to unpack .../236-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 608s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 608s Selecting previously unselected package r-cran-fansi. 608s Preparing to unpack .../237-r-cran-fansi_1.0.5-1_amd64.deb ... 608s Unpacking r-cran-fansi (1.0.5-1) ... 608s Selecting previously unselected package r-cran-pkgconfig. 608s Preparing to unpack .../238-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 608s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 608s Selecting previously unselected package r-cran-tibble. 608s Preparing to unpack .../239-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 608s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 608s Selecting previously unselected package r-cran-tidyselect. 608s Preparing to unpack .../240-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 608s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 608s Selecting previously unselected package r-cran-dplyr. 608s Preparing to unpack .../241-r-cran-dplyr_1.1.4-4_amd64.deb ... 608s Unpacking r-cran-dplyr (1.1.4-4) ... 609s Selecting previously unselected package r-cran-evaluate. 609s Preparing to unpack .../242-r-cran-evaluate_1.0.3-1_all.deb ... 609s Unpacking r-cran-evaluate (1.0.3-1) ... 609s Selecting previously unselected package r-cran-farver. 609s Preparing to unpack .../243-r-cran-farver_2.1.2-1_amd64.deb ... 609s Unpacking r-cran-farver (2.1.2-1) ... 609s Selecting previously unselected package r-cran-fontawesome. 609s Preparing to unpack .../244-r-cran-fontawesome_0.5.3-1_all.deb ... 609s Unpacking r-cran-fontawesome (0.5.3-1) ... 609s Selecting previously unselected package r-cran-gtable. 609s Preparing to unpack .../245-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 609s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 609s Selecting previously unselected package r-cran-isoband. 609s Preparing to unpack .../246-r-cran-isoband_0.2.7-1_amd64.deb ... 609s Unpacking r-cran-isoband (0.2.7-1) ... 609s Selecting previously unselected package r-cran-lattice. 609s Preparing to unpack .../247-r-cran-lattice_0.22-6-1_amd64.deb ... 609s Unpacking r-cran-lattice (0.22-6-1) ... 609s Selecting previously unselected package r-cran-nlme. 609s Preparing to unpack .../248-r-cran-nlme_3.1.167-1_amd64.deb ... 609s Unpacking r-cran-nlme (3.1.167-1) ... 609s Selecting previously unselected package r-cran-matrix. 609s Preparing to unpack .../249-r-cran-matrix_1.7-3-1_amd64.deb ... 609s Unpacking r-cran-matrix (1.7-3-1) ... 609s Selecting previously unselected package r-cran-mgcv. 609s Preparing to unpack .../250-r-cran-mgcv_1.9-1-1_amd64.deb ... 609s Unpacking r-cran-mgcv (1.9-1-1) ... 609s Selecting previously unselected package r-cran-labeling. 609s Preparing to unpack .../251-r-cran-labeling_0.4.3-1_all.deb ... 609s Unpacking r-cran-labeling (0.4.3-1) ... 609s Selecting previously unselected package r-cran-munsell. 609s Preparing to unpack .../252-r-cran-munsell_0.5.1-1_all.deb ... 609s Unpacking r-cran-munsell (0.5.1-1) ... 609s Selecting previously unselected package r-cran-rcolorbrewer. 609s Preparing to unpack .../253-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 609s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 609s Selecting previously unselected package r-cran-viridislite. 609s Preparing to unpack .../254-r-cran-viridislite_0.4.2-2_all.deb ... 609s Unpacking r-cran-viridislite (0.4.2-2) ... 609s Selecting previously unselected package r-cran-scales. 609s Preparing to unpack .../255-r-cran-scales_1.3.0-1_all.deb ... 609s Unpacking r-cran-scales (1.3.0-1) ... 609s Selecting previously unselected package r-cran-ggplot2. 609s Preparing to unpack .../256-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 609s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 609s Selecting previously unselected package r-cran-goftest. 609s Preparing to unpack .../257-r-cran-goftest_1.2-3-1_amd64.deb ... 609s Unpacking r-cran-goftest (1.2-3-1) ... 609s Selecting previously unselected package r-cran-xfun. 609s Preparing to unpack .../258-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 609s Unpacking r-cran-xfun (0.51+dfsg-1) ... 609s Selecting previously unselected package r-cran-highr. 609s Preparing to unpack .../259-r-cran-highr_0.11+dfsg-1_all.deb ... 609s Unpacking r-cran-highr (0.11+dfsg-1) ... 609s Selecting previously unselected package r-cran-pkgkitten. 609s Preparing to unpack .../260-r-cran-pkgkitten_0.2.4-1_all.deb ... 609s Unpacking r-cran-pkgkitten (0.2.4-1) ... 609s Selecting previously unselected package r-cran-rcpp. 609s Preparing to unpack .../261-r-cran-rcpp_1.0.14-1_amd64.deb ... 609s Unpacking r-cran-rcpp (1.0.14-1) ... 610s Selecting previously unselected package r-cran-later. 610s Preparing to unpack .../262-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 610s Unpacking r-cran-later (1.4.1+dfsg-1) ... 610s Selecting previously unselected package r-cran-promises. 610s Preparing to unpack .../263-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 610s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 610s Selecting previously unselected package r-cran-httpuv. 610s Preparing to unpack .../264-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 610s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 610s Selecting previously unselected package libjs-mathjax. 610s Preparing to unpack .../265-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 610s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 610s Selecting previously unselected package r-cran-knitr. 610s Preparing to unpack .../266-r-cran-knitr_1.49+dfsg-1_all.deb ... 610s Unpacking r-cran-knitr (1.49+dfsg-1) ... 610s Selecting previously unselected package r-cran-units. 610s Preparing to unpack .../267-r-cran-units_0.8-5+dfsg-1_amd64.deb ... 610s Unpacking r-cran-units (0.8-5+dfsg-1) ... 610s Selecting previously unselected package r-cran-wk. 611s Preparing to unpack .../268-r-cran-wk_0.9.4-1_amd64.deb ... 611s Unpacking r-cran-wk (0.9.4-1) ... 611s Selecting previously unselected package r-cran-s2. 611s Preparing to unpack .../269-r-cran-s2_1.1.7-1_amd64.deb ... 611s Unpacking r-cran-s2 (1.1.7-1) ... 611s Selecting previously unselected package r-cran-sf. 611s Preparing to unpack .../270-r-cran-sf_1.0-19+dfsg-1_amd64.deb ... 611s Unpacking r-cran-sf (1.0-19+dfsg-1) ... 611s Selecting previously unselected package r-cran-lwgeom. 611s Preparing to unpack .../271-r-cran-lwgeom_0.2-14-1_amd64.deb ... 611s Unpacking r-cran-lwgeom (0.2-14-1) ... 611s Selecting previously unselected package r-cran-maps. 611s Preparing to unpack .../272-r-cran-maps_3.4.2.1-1_amd64.deb ... 611s Unpacking r-cran-maps (3.4.2.1-1) ... 611s Selecting previously unselected package r-cran-pbapply. 611s Preparing to unpack .../273-r-cran-pbapply_1.7-2-1_all.deb ... 611s Unpacking r-cran-pbapply (1.7-2-1) ... 611s Selecting previously unselected package r-cran-pkgbuild. 611s Preparing to unpack .../274-r-cran-pkgbuild_1.4.6-1_all.deb ... 611s Unpacking r-cran-pkgbuild (1.4.6-1) ... 611s Selecting previously unselected package r-cran-rprojroot. 611s Preparing to unpack .../275-r-cran-rprojroot_2.0.4-2_all.deb ... 611s Unpacking r-cran-rprojroot (2.0.4-2) ... 611s Selecting previously unselected package r-cran-pkgload. 611s Preparing to unpack .../276-r-cran-pkgload_1.4.0-1_all.deb ... 611s Unpacking r-cran-pkgload (1.4.0-1) ... 611s Selecting previously unselected package r-cran-plogr. 611s Preparing to unpack .../277-r-cran-plogr_0.2.0-3build1_all.deb ... 611s Unpacking r-cran-plogr (0.2.0-3build1) ... 611s Selecting previously unselected package r-cran-polyclip. 611s Preparing to unpack .../278-r-cran-polyclip_1.10-7-1_amd64.deb ... 611s Unpacking r-cran-polyclip (1.10-7-1) ... 611s Selecting previously unselected package r-cran-praise. 611s Preparing to unpack .../279-r-cran-praise_1.0.0-4build1_all.deb ... 611s Unpacking r-cran-praise (1.0.0-4build1) ... 611s Selecting previously unselected package r-cran-purrr. 611s Preparing to unpack .../280-r-cran-purrr_1.0.4-1_amd64.deb ... 611s Unpacking r-cran-purrr (1.0.4-1) ... 611s Selecting previously unselected package r-cran-sp. 611s Preparing to unpack .../281-r-cran-sp_1%3a2.2-0+dfsg-1_amd64.deb ... 611s Unpacking r-cran-sp (1:2.2-0+dfsg-1) ... 611s Selecting previously unselected package r-cran-terra. 611s Preparing to unpack .../282-r-cran-terra_1.8-29-1_amd64.deb ... 611s Unpacking r-cran-terra (1.8-29-1) ... 611s Selecting previously unselected package r-cran-raster. 611s Preparing to unpack .../283-r-cran-raster_3.6-31-1_amd64.deb ... 611s Unpacking r-cran-raster (3.6-31-1) ... 611s Selecting previously unselected package r-cran-tinytex. 611s Preparing to unpack .../284-r-cran-tinytex_0.56-1_all.deb ... 611s Unpacking r-cran-tinytex (0.56-1) ... 611s Selecting previously unselected package libjs-modernizr. 611s Preparing to unpack .../285-libjs-modernizr_3.13.0-0.1_all.deb ... 611s Unpacking libjs-modernizr (3.13.0-0.1) ... 611s Selecting previously unselected package r-cran-xtable. 611s Preparing to unpack .../286-r-cran-xtable_1%3a1.8-4-2_all.deb ... 611s Unpacking r-cran-xtable (1:1.8-4-2) ... 611s Selecting previously unselected package r-cran-sourcetools. 611s Preparing to unpack .../287-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 611s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 611s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 611s Preparing to unpack .../288-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 611s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 611s Selecting previously unselected package r-cran-shiny. 611s Preparing to unpack .../289-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 611s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 612s Selecting previously unselected package r-cran-rmarkdown. 612s Preparing to unpack .../290-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 612s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 612s Selecting previously unselected package r-cran-survival. 612s Preparing to unpack .../291-r-cran-survival_3.8-3-1_amd64.deb ... 612s Unpacking r-cran-survival (3.8-3-1) ... 612s Selecting previously unselected package r-cran-rpart. 612s Preparing to unpack .../292-r-cran-rpart_4.1.24-1_amd64.deb ... 612s Unpacking r-cran-rpart (4.1.24-1) ... 612s Selecting previously unselected package r-cran-rpostgresql. 612s Preparing to unpack .../293-r-cran-rpostgresql_0.7-7+dfsg-1_amd64.deb ... 612s Unpacking r-cran-rpostgresql (0.7-7+dfsg-1) ... 612s Selecting previously unselected package r-cran-rsqlite. 612s Preparing to unpack .../294-r-cran-rsqlite_2.3.9-1_amd64.deb ... 612s Unpacking r-cran-rsqlite (2.3.9-1) ... 612s Selecting previously unselected package r-cran-spatstat.utils. 612s Preparing to unpack .../295-r-cran-spatstat.utils_3.1-2-1_amd64.deb ... 612s Unpacking r-cran-spatstat.utils (3.1-2-1) ... 612s Selecting previously unselected package r-cran-spatstat.data. 612s Preparing to unpack .../296-r-cran-spatstat.data_3.1-4-1_all.deb ... 612s Unpacking r-cran-spatstat.data (3.1-4-1) ... 612s Selecting previously unselected package r-cran-spatstat.univar. 612s Preparing to unpack .../297-r-cran-spatstat.univar_3.1-1-1build1_amd64.deb ... 612s Unpacking r-cran-spatstat.univar (3.1-1-1build1) ... 612s Selecting previously unselected package r-cran-spatstat.geom. 612s Preparing to unpack .../298-r-cran-spatstat.geom_3.3-5-1_amd64.deb ... 612s Unpacking r-cran-spatstat.geom (3.3-5-1) ... 612s Selecting previously unselected package 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Setting up r-cran-munsell (0.5.1-1) ... 616s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 616s Setting up r-cran-fontawesome (0.5.3-1) ... 616s Setting up r-cran-survival (3.8-3-1) ... 616s Setting up gfortran (4:14.2.0-1ubuntu1) ... 616s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 616s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 616s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 616s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 616s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 616s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 616s Setting up r-cran-httr (1.4.7+dfsg-1) ... 616s Setting up r-cran-scales (1.3.0-1) ... 616s Setting up r-cran-memoise (2.0.1-1) ... 616s Setting up r-cran-covr (3.6.4+dfsg-1) ... 616s Setting up r-cran-promises (1.3.2+dfsg-1) ... 616s Setting up r-cran-purrr (1.0.4-1) ... 616s Setting up r-cran-e1071 (1.7-16-1) ... 616s Setting up r-cran-spatstat.data (3.1-4-1) ... 616s Setting up r-cran-blob (1.2.4-1) ... 616s Setting up r-cran-spatstat.geom (3.3-5-1) ... 616s Setting up r-cran-pkgbuild (1.4.6-1) ... 616s Setting up r-cran-dplyr (1.1.4-4) ... 616s Setting up r-cran-rsqlite (2.3.9-1) ... 616s Setting up r-cran-pkgload (1.4.0-1) ... 616s Setting up r-base-dev (4.4.3-1) ... 616s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 616s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 616s Setting up r-cran-rpart (4.1.24-1) ... 616s Setting up r-cran-spatstat.random (3.3-2-1) ... 616s Setting up r-cran-testthat (3.2.3-1) ... 616s Setting up r-cran-classint (0.4-11+dfsg-1) ... 616s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 616s Setting up r-cran-spatstat.explore (3.3-4-1) ... 616s Setting up r-cran-tidyr (1.3.1-1) ... 616s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 616s Setting up r-cran-spatstat.model (3.3-4-1) ... 616s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 616s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 616s Setting up r-cran-spatstat.linnet (3.2-5-1) ... 616s Setting up r-cran-spatstat (3.3-1-1) ... 616s Setting up libheif-plugin-aomdec:amd64 (1.19.7-1) ... 616s Setting up libheif-plugin-libde265:amd64 (1.19.7-1) ... 616s Setting up libheif1:amd64 (1.19.7-1) ... 616s Setting up libgdal36:amd64 (3.10.2+dfsg-1build3) ... 616s Setting up r-cran-sf (1.0-19+dfsg-1) ... 616s Setting up r-cran-stars (0.6-8-1) ... 616s Setting up r-cran-lwgeom (0.2-14-1) ... 616s Setting up r-cran-terra (1.8-29-1) ... 616s Setting up r-cran-raster (3.6-31-1) ... 616s Processing triggers for install-info (7.1.1-1) ... 616s Processing triggers for libc-bin (2.41-1ubuntu2) ... 616s Processing triggers for man-db (2.13.0-1) ... 622s autopkgtest [22:39:57]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 622s autopkgtest [22:39:57]: test pkg-r-autopkgtest: [----------------------- 622s Test: Try to load the R library sf 622s 622s R version 4.4.3 (2025-02-28) -- "Trophy Case" 622s Copyright (C) 2025 The R Foundation for Statistical Computing 622s Platform: x86_64-pc-linux-gnu 622s 622s R is free software and comes with ABSOLUTELY NO WARRANTY. 622s You are welcome to redistribute it under certain conditions. 622s Type 'license()' or 'licence()' for distribution details. 622s 622s R is a collaborative project with many contributors. 622s Type 'contributors()' for more information and 622s 'citation()' on how to cite R or R packages in publications. 622s 622s Type 'demo()' for some demos, 'help()' for on-line help, or 622s 'help.start()' for an HTML browser interface to help. 622s Type 'q()' to quit R. 622s 622s > library('sf') 623s Linking to GEOS 3.13.1, GDAL 3.10.2, PROJ 9.5.1; sf_use_s2() is TRUE 623s WARNING: different compile-time and runtime versions for GEOS found: 623s Linked against: 3.13.1-CAPI-1.19.2 compiled against: 3.13.0-CAPI-1.19.0 623s It is probably a good idea to reinstall sf (and maybe lwgeom too) 623s > 623s > 623s Other tests are currently unsupported! 623s They will be progressively added. 623s autopkgtest [22:39:58]: test pkg-r-autopkgtest: -----------------------] 624s pkg-r-autopkgtest PASS 624s autopkgtest [22:39:59]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 624s autopkgtest [22:39:59]: @@@@@@@@@@@@@@@@@@@@ summary 624s run-unit-test PASS 624s pkg-r-autopkgtest PASS 641s nova [W] Skipping flock for amd64 641s Creating nova instance adt-plucky-amd64-r-cran-sf-20250315-222935-juju-7f2275-prod-proposed-migration-environment-20-4d2dcf9e-3538-4704-aa28-77bbce03a0a5 from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)... 641s nova [W] Timed out waiting for e6c2cb57-7b37-44b2-82ca-2a8ae1733547 to get deleted. 641s nova [W] Skipping flock for amd64 641s Creating nova instance adt-plucky-amd64-r-cran-sf-20250315-222935-juju-7f2275-prod-proposed-migration-environment-20-4d2dcf9e-3538-4704-aa28-77bbce03a0a5 from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)... 641s nova [W] Timed out waiting for 6bc7dd51-bd69-41ce-936c-c7b1bf3028c0 to get deleted.