0s autopkgtest [16:06:19]: starting date and time: 2025-01-17 16:06:19+0000 0s autopkgtest [16:06:19]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [16:06:19]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.lfu67tbw/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-summarizedexperiment,src:r-bioc-biocgenerics,src:r-bioc-delayedarray,src:r-bioc-s4arrays,src:r-bioc-s4vectors,src:r-bioc-sparsearray,src:r-cran-seurat --apt-upgrade r-cran-seurat --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-summarizedexperiment/1.36.0+dfsg-2 r-bioc-biocgenerics/0.52.0-2 r-bioc-delayedarray/0.32.0+dfsg-2 r-bioc-s4arrays/1.6.0+dfsg-2 r-bioc-s4vectors/0.44.0+dfsg-2 r-bioc-sparsearray/1.6.0+dfsg-2 r-cran-seurat/5.1.0-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-29.secgroup --name adt-plucky-amd64-r-cran-seurat-20250117-160619-juju-7f2275-prod-proposed-migration-environment-20-74d4e8c0-e9f3-49ae-8a60-0e4bae3bad89 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 46s autopkgtest [16:07:05]: testbed dpkg architecture: amd64 46s autopkgtest [16:07:05]: testbed apt version: 2.9.18 46s autopkgtest [16:07:05]: @@@@@@@@@@@@@@@@@@@@ test bed setup 46s autopkgtest [16:07:05]: testbed release detected to be: None 47s autopkgtest [16:07:06]: updating testbed package index (apt update) 48s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 48s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 48s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 48s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 48s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [868 kB] 48s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [178 kB] 48s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 48s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.1 kB] 48s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [228 kB] 48s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [331 kB] 48s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [40.1 kB] 48s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2408 B] 48s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [468 kB] 48s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [1095 kB] 48s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [4444 B] 48s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [24.9 kB] 48s Fetched 3337 kB in 1s (3378 kB/s) 50s Reading package lists... 50s Reading package lists... 51s Building dependency tree... 51s Reading state information... 51s Calculating upgrade... 51s The following packages will be upgraded: 51s libgudev-1.0-0 usb.ids 51s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 51s Need to get 239 kB of archives. 51s After this operation, 0 B of additional disk space will be used. 51s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 usb.ids all 2025.01.14-1 [223 kB] 52s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libgudev-1.0-0 amd64 1:238-6 [15.8 kB] 52s Fetched 239 kB in 0s (482 kB/s) 52s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 52s Preparing to unpack .../usb.ids_2025.01.14-1_all.deb ... 52s Unpacking usb.ids (2025.01.14-1) over (2024.12.04-1) ... 52s Preparing to unpack .../libgudev-1.0-0_1%3a238-6_amd64.deb ... 52s Unpacking libgudev-1.0-0:amd64 (1:238-6) over (1:238-5ubuntu1) ... 52s Setting up usb.ids (2025.01.14-1) ... 52s Setting up libgudev-1.0-0:amd64 (1:238-6) ... 52s Processing triggers for libc-bin (2.40-4ubuntu1) ... 53s Reading package lists...autopkgtest [16:07:12]: upgrading testbed (apt dist-upgrade and autopurge) 53s 53s Building dependency tree... 53s Reading state information... 53s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 53s Reading package lists... 54s Building dependency tree... 54s Reading state information... 54s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 54s Starting 2 pkgProblemResolver with broken count: 0 54s Done 55s Entering ResolveByKeep 55s 55s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 56s Reading package lists... 56s Building dependency tree... 56s Reading state information... 56s Starting pkgProblemResolver with broken count: 0 56s Starting 2 pkgProblemResolver with broken count: 0 56s Done 57s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 59s autopkgtest [16:07:18]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 60s autopkgtest [16:07:19]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-seurat 61s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/universe r-cran-seurat 5.1.0-1 (dsc) [3385 B] 61s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe r-cran-seurat 5.1.0-1 (tar) [2064 kB] 61s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe r-cran-seurat 5.1.0-1 (diff) [4724 B] 62s gpgv: Signature made Tue Sep 10 23:46:06 2024 UTC 62s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 62s gpgv: issuer "plessy@debian.org" 62s gpgv: Can't check signature: No public key 62s dpkg-source: warning: cannot verify inline signature for ./r-cran-seurat_5.1.0-1.dsc: no acceptable signature found 62s autopkgtest [16:07:21]: testing package r-cran-seurat version 5.1.0-1 62s autopkgtest [16:07:21]: build not needed 64s autopkgtest [16:07:23]: test run-unit-test: preparing testbed 65s Reading package lists... 65s Building dependency tree... 65s Reading state information... 65s Starting pkgProblemResolver with broken count: 12 65s Starting 2 pkgProblemResolver with broken count: 12 65s Investigating (0) r-bioc-iranges:amd64 < none -> 2.38.1-1 @un puN Ib > 65s Broken r-bioc-iranges:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 65s Considering r-bioc-biocgenerics:amd64 71 as a solution to r-bioc-iranges:amd64 31 65s Re-Instated r-bioc-biocgenerics:amd64 65s Investigating (0) r-bioc-genomeinfodb:amd64 < none -> 1.40.1+dfsg-1 @un puN Ib > 65s Broken r-bioc-genomeinfodb:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 65s Considering r-bioc-biocgenerics:amd64 31 as a solution to r-bioc-genomeinfodb:amd64 13 65s Broken r-bioc-genomeinfodb:amd64 Depends on r-bioc-ucsc.utils:amd64 < none | 1.0.0+ds-2 @un uH > (> 1.0.0+ds-1) 65s Considering r-bioc-ucsc.utils:amd64 0 as a solution to r-bioc-genomeinfodb:amd64 13 65s Reinst Failed because of protected r-bioc-biocgenerics:amd64 65s Considering r-bioc-ucsc.utils:amd64 0 as a solution to r-bioc-genomeinfodb:amd64 13 65s Broken r-bioc-genomeinfodb:amd64 Depends on r-bioc-genomeinfodbdata:amd64 < none | 1.2.13-2 @un uH > (>= 1.2.12) 65s Considering r-bioc-genomeinfodbdata:amd64 0 as a solution to r-bioc-genomeinfodb:amd64 13 65s Re-Instated r-bioc-genomeinfodbdata:amd64 65s Investigating (0) r-bioc-genomicranges:amd64 < none -> 1.56.2+dfsg-1 @un puN Ib > 65s Broken r-bioc-genomicranges:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 65s Considering r-bioc-biocgenerics:amd64 31 as a solution to r-bioc-genomicranges:amd64 11 65s Investigating (0) r-bioc-biobase:amd64 < none -> 2.64.0-4 @un puN Ib > 65s Broken r-bioc-biobase:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 65s Considering r-bioc-biocgenerics:amd64 31 as a solution to r-bioc-biobase:amd64 10 65s Investigating (0) r-bioc-matrixgenerics:amd64 < none -> 1.16.0-2 @un puN Ib > 65s Broken r-bioc-matrixgenerics:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 65s Considering r-bioc-biocgenerics:amd64 31 as a solution to r-bioc-matrixgenerics:amd64 10 65s Investigating (0) r-bioc-xvector:amd64 < none -> 0.44.0-1 @un puN Ib > 65s Broken r-bioc-xvector:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 65s Considering r-bioc-biocgenerics:amd64 31 as a solution to r-bioc-xvector:amd64 8 65s Broken r-bioc-xvector:amd64 Depends on r-bioc-zlibbioc:amd64 < none | 1.50.0+dfsg-2 @un uH > (>= 1.50.0) 65s Considering r-bioc-zlibbioc:amd64 0 as a solution to r-bioc-xvector:amd64 8 65s Reinst Failed because of protected r-bioc-biocgenerics:amd64 65s Considering r-bioc-zlibbioc:amd64 0 as a solution to r-bioc-xvector:amd64 8 65s Investigating (0) r-bioc-limma:amd64 < none -> 3.60.6+dfsg-1 @un puN Ib > 65s Broken r-bioc-limma:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 65s Considering r-bioc-biocgenerics:amd64 31 as a solution to r-bioc-limma:amd64 3 65s Broken r-bioc-limma:amd64 Depends on r-cran-statmod:amd64 < none | 1.5.0-1 @un uH > 65s Considering r-cran-statmod:amd64 1 as a solution to r-bioc-limma:amd64 3 65s Re-Instated r-cran-statmod:amd64 65s Investigating (0) r-bioc-rtracklayer:amd64 < none -> 1.64.0-1 @un puN Ib > 65s Broken r-bioc-rtracklayer:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 65s Considering r-bioc-biocgenerics:amd64 31 as a solution to r-bioc-rtracklayer:amd64 1 65s Broken r-bioc-rtracklayer:amd64 Depends on r-cran-xml:amd64 < none | 3.99-0.18-1 @un uH > (>= 1.98-0) 65s Considering r-cran-xml:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 65s Re-Instated r-cran-xml:amd64 65s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-biostrings:amd64 < none | 2.72.1+dfsg-1 @un uH > (>= 2.72.1) 65s Considering r-bioc-biostrings:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 65s Reinst Failed because of protected r-bioc-biocgenerics:amd64 65s Considering r-bioc-biostrings:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 65s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-zlibbioc:amd64 < none | 1.50.0+dfsg-2 @un uH > (>= 1.50.0) 65s Considering r-bioc-zlibbioc:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 65s Considering r-bioc-zlibbioc:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 65s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-rsamtools:amd64 < none | 2.20.0+dfsg-1 @un uH > (>= 2.20.0) 65s Considering r-bioc-rsamtools:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 65s Reinst Failed because of protected r-bioc-biocgenerics:amd64 65s Considering r-bioc-rsamtools:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 65s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-genomicalignments:amd64 < none | 1.40.0-1 @un uH > (>= 1.40.0) 65s Considering r-bioc-genomicalignments:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 65s Reinst Failed because of protected r-bioc-biocgenerics:amd64 65s Considering r-bioc-genomicalignments:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 65s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-biocio:amd64 < none | 1.14.0+dfsg-1 @un uH > (>= 1.14.0) 65s Considering r-bioc-biocio:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 65s Reinst Failed because of protected r-bioc-biocgenerics:amd64 65s Considering r-bioc-biocio:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 65s Broken r-bioc-rtracklayer:amd64 Depends on r-cran-restfulr:amd64 < none | 0.0.15-1 @un uH > (>= 0.0.13) 65s Considering r-cran-restfulr:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 65s Re-Instated r-cran-rcurl:amd64 65s Re-Instated r-cran-rjson:amd64 65s Re-Instated r-cran-restfulr:amd64 65s Investigating (0) r-bioc-deseq2:amd64 < none -> 1.44.0+dfsg-1 @un puN Ib > 65s Broken r-bioc-deseq2:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 65s Considering r-bioc-biocgenerics:amd64 31 as a solution to r-bioc-deseq2:amd64 1 65s Broken r-bioc-deseq2:amd64 Depends on r-bioc-biocparallel:amd64 < none | 1.38.0-2 @un uH > (>= 1.38.0) 65s Considering r-bioc-biocparallel:amd64 0 as a solution to r-bioc-deseq2:amd64 1 65s Reinst Failed because of protected r-bioc-biocgenerics:amd64 65s Considering r-bioc-biocparallel:amd64 0 as a solution to r-bioc-deseq2:amd64 1 65s Broken r-bioc-deseq2:amd64 Depends on r-cran-locfit:amd64 < none | 1.5-9.10-1 @un uH > 65s Considering r-cran-locfit:amd64 2 as a solution to r-bioc-deseq2:amd64 1 65s Re-Instated r-cran-locfit:amd64 65s Investigating (0) r-bioc-singlecellexperiment:amd64 < none -> 1.26.0+ds-1 @un puN Ib > 65s Broken r-bioc-singlecellexperiment:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 65s Considering r-bioc-biocgenerics:amd64 31 as a solution to r-bioc-singlecellexperiment:amd64 1 65s Investigating (0) r-bioc-monocle:amd64 < none -> 2.32.0-1 @un puN Ib > 65s Broken r-bioc-monocle:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 65s Considering r-bioc-biocgenerics:amd64 31 as a solution to r-bioc-monocle:amd64 1 65s Broken r-bioc-monocle:amd64 Depends on r-cran-ddrtree:amd64 < none | 0.1.5-2 @un uH > (>= 0.1.4) 65s Considering r-cran-ddrtree:amd64 0 as a solution to r-bioc-monocle:amd64 1 65s Re-Instated r-cran-ddrtree:amd64 65s Broken r-bioc-monocle:amd64 Depends on r-bioc-hsmmsinglecell:amd64 < none | 1.24.0-1 @un uH > (>= 0.101.5) 65s Considering r-bioc-hsmmsinglecell:amd64 0 as a solution to r-bioc-monocle:amd64 1 65s Reinst Failed because of protected r-bioc-biocgenerics:amd64 65s Considering r-bioc-hsmmsinglecell:amd64 0 as a solution to r-bioc-monocle:amd64 1 65s Broken r-bioc-monocle:amd64 Depends on r-cran-combinat:amd64 < none | 0.0-8-7build1 @un uH > 65s Considering r-cran-combinat:amd64 1 as a solution to r-bioc-monocle:amd64 1 65s Re-Instated r-cran-combinat:amd64 65s Broken r-bioc-monocle:amd64 Depends on r-cran-fastica:amd64 < none | 1.2-7-1 @un uH > 65s Considering r-cran-fastica:amd64 3 as a solution to r-bioc-monocle:amd64 1 65s Re-Instated r-cran-fastica:amd64 65s Broken r-bioc-monocle:amd64 Depends on r-cran-leidenbase:amd64 < none | 0.1.27-1 @un uH > (>= 0.1.9) 65s Considering r-cran-leidenbase:amd64 0 as a solution to r-bioc-monocle:amd64 1 65s Re-Instated r-cran-leidenbase:amd64 65s Broken r-bioc-monocle:amd64 Depends on r-cran-pheatmap:amd64 < none | 1.0.12-2build1 @un uH > 65s Considering r-cran-pheatmap:amd64 1 as a solution to r-bioc-monocle:amd64 1 65s Re-Instated r-cran-pheatmap:amd64 65s Broken r-bioc-monocle:amd64 Depends on r-cran-slam:amd64 < none | 0.1-55-1 @un uH > 65s Considering r-cran-slam:amd64 1 as a solution to r-bioc-monocle:amd64 1 65s Re-Instated r-cran-slam:amd64 65s Broken r-bioc-monocle:amd64 Depends on r-cran-viridis:amd64 < none | 0.6.5-1 @un uH > 65s Considering r-cran-viridis:amd64 2 as a solution to r-bioc-monocle:amd64 1 65s Re-Instated r-cran-viridis:amd64 65s Broken r-bioc-monocle:amd64 Depends on r-bioc-biocviews:amd64 < none | 1.72.0-1 @un uH > 65s Considering r-bioc-biocviews:amd64 1 as a solution to r-bioc-monocle:amd64 1 65s Reinst Failed because of protected r-bioc-biocgenerics:amd64 65s Considering r-bioc-biocviews:amd64 1 as a solution to r-bioc-monocle:amd64 1 65s Investigating (0) r-bioc-multtest:amd64 < none -> 2.60.0-1 @un puN Ib > 65s Broken r-bioc-multtest:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 65s Considering r-bioc-biocgenerics:amd64 31 as a solution to r-bioc-multtest:amd64 0 65s Done 65s Some packages could not be installed. This may mean that you have 65s requested an impossible situation or if you are using the unstable 65s distribution that some required packages have not yet been created 65s or been moved out of Incoming. 65s The following information may help to resolve the situation: 65s 65s The following packages have unmet dependencies: 65s r-bioc-biobase : Depends: r-api-bioc-3.19 65s r-bioc-deseq2 : Depends: r-api-bioc-3.19 65s Depends: r-bioc-biocparallel (>= 1.38.0) but it is not going to be installed 65s r-bioc-genomeinfodb : Depends: r-api-bioc-3.19 65s Depends: r-bioc-ucsc.utils (> 1.0.0+ds-1) but it is not going to be installed 65s r-bioc-genomicranges : Depends: r-api-bioc-3.19 65s r-bioc-iranges : Depends: r-api-bioc-3.19 65s r-bioc-limma : Depends: r-api-bioc-3.19 65s r-bioc-matrixgenerics : Depends: r-api-bioc-3.19 65s r-bioc-monocle : Depends: r-api-bioc-3.19 65s Depends: r-bioc-hsmmsinglecell (>= 0.101.5) but it is not going to be installed 65s Depends: r-bioc-biocviews but it is not going to be installed 65s r-bioc-multtest : Depends: r-api-bioc-3.19 65s r-bioc-rtracklayer : Depends: r-api-bioc-3.19 65s Depends: r-bioc-biostrings (>= 2.72.1) but it is not going to be installed 65s Depends: r-bioc-zlibbioc (>= 1.50.0) but it is not going to be installed 65s Depends: r-bioc-rsamtools (>= 2.20.0) but it is not going to be installed 65s Depends: r-bioc-genomicalignments (>= 1.40.0) but it is not going to be installed 65s Depends: r-bioc-biocio (>= 1.14.0) but it is not going to be installed 65s r-bioc-singlecellexperiment : Depends: r-api-bioc-3.19 65s r-bioc-xvector : Depends: r-api-bioc-3.19 65s Depends: r-bioc-zlibbioc (>= 1.50.0) but it is not going to be installed 65s E: Unable to correct problems, you have held broken packages. 66s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed 66s Reading package lists... 66s Building dependency tree... 66s Reading state information... 67s Starting pkgProblemResolver with broken count: 0 67s Starting 2 pkgProblemResolver with broken count: 0 67s Done 67s The following NEW packages will be installed: 67s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 67s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax 67s javascript-common libaec0 libamd3 libasan8 libblas3 libboost-dev 67s libboost1.83-dev libcairo2 libcolamd3 libdatrie1 libdeflate0 67s libfftw3-double3 libfontconfig1 libgcc-14-dev libgfortran5 libglpk40 67s libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 67s libhwasan0 libice6 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap 67s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 67s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 67s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 67s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack3 67s liblerc4 liblsan0 libltdl7 liblua5.4-0 libpango-1.0-0 libpangocairo-1.0-0 67s libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libquadmath0 67s libsharpyuv0 libsm6 libstdc++-14-dev libsuitesparseconfig7 libsz2 libtcl8.6 67s libthai-data libthai0 libtiff6 libtk8.6 libtsan2 libubsan1 libwebp7 67s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 littler 67s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 67s r-base-core r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio 67s r-bioc-biocparallel r-bioc-biocviews r-bioc-biostrings r-bioc-delayedarray 67s r-bioc-deseq2 r-bioc-genomeinfodb r-bioc-genomeinfodbdata 67s r-bioc-genomicalignments r-bioc-genomicranges r-bioc-graph 67s r-bioc-hsmmsinglecell r-bioc-iranges r-bioc-limma r-bioc-matrixgenerics 67s r-bioc-monocle r-bioc-multtest r-bioc-rbgl r-bioc-rhtslib r-bioc-rsamtools 67s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 67s r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-summarizedexperiment 67s r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-ape 67s r-cran-askpass r-cran-base64enc r-cran-beeswarm r-cran-bh r-cran-biocmanager 67s r-cran-bit r-cran-bit64 r-cran-bitops r-cran-brio r-cran-bslib r-cran-cachem 67s r-cran-cairo r-cran-callr r-cran-caret r-cran-catools r-cran-class 67s r-cran-cli r-cran-clock r-cran-cluster r-cran-codetools r-cran-colorspace 67s r-cran-colourpicker r-cran-combinat r-cran-commonmark r-cran-conquer 67s r-cran-cowplot r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl 67s r-cran-data.table r-cran-ddrtree r-cran-deldir r-cran-deoptimr r-cran-desc 67s r-cran-diagram r-cran-diffobj r-cran-digest r-cran-dotcall64 r-cran-dplyr 67s r-cran-dqrng r-cran-e1071 r-cran-evaluate r-cran-fansi r-cran-farver 67s r-cran-fastdummies r-cran-fastica r-cran-fastmap r-cran-fitdistrplus 67s r-cran-fnn r-cran-fontawesome r-cran-foreach r-cran-formatr r-cran-fs 67s r-cran-futile.logger r-cran-futile.options r-cran-future r-cran-future.apply 67s r-cran-gdata r-cran-generics r-cran-ggbeeswarm r-cran-ggplot2 r-cran-ggrastr 67s r-cran-ggrepel r-cran-ggridges r-cran-globals r-cran-glue r-cran-goftest 67s r-cran-gower r-cran-gplots r-cran-gridextra r-cran-gtable r-cran-gtools 67s r-cran-hardhat r-cran-hdf5r r-cran-here r-cran-highr r-cran-htmltools 67s r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-ica r-cran-igraph 67s r-cran-ipred r-cran-irlba r-cran-isoband r-cran-iterators r-cran-jquerylib 67s r-cran-jsonlite r-cran-kernlab r-cran-kernsmooth r-cran-knitr 67s r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lava 67s r-cran-lazyeval r-cran-leiden r-cran-leidenbase r-cran-lifecycle 67s r-cran-listenv r-cran-littler r-cran-lmtest r-cran-locfit r-cran-lubridate 67s r-cran-magrittr r-cran-mass r-cran-mathjaxr r-cran-matrix 67s r-cran-matrixmodels r-cran-matrixstats r-cran-memoise r-cran-metap 67s r-cran-mgcv r-cran-mime r-cran-miniui r-cran-mixtools r-cran-mnormt 67s r-cran-modelmetrics r-cran-multcomp r-cran-munsell r-cran-mutoss 67s r-cran-mvtnorm r-cran-nlme r-cran-nnet r-cran-numderiv r-cran-openssl 67s r-cran-parallelly r-cran-patchwork r-cran-pbapply r-cran-pheatmap 67s r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 67s r-cran-pkgload r-cran-plotly r-cran-plotrix r-cran-plyr r-cran-png 67s r-cran-polyclip r-cran-praise r-cran-proc r-cran-processx r-cran-prodlim 67s r-cran-progressr r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr 67s r-cran-qqconf r-cran-quantreg r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils 67s r-cran-r6 r-cran-ragg r-cran-rann r-cran-rappdirs r-cran-rbibutils 67s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppannoy r-cran-rcpparmadillo 67s r-cran-rcppeigen r-cran-rcpphnsw r-cran-rcppprogress r-cran-rcpptoml 67s r-cran-rcurl r-cran-rdpack r-cran-recipes r-cran-reshape2 r-cran-restfulr 67s r-cran-reticulate r-cran-rjson r-cran-rlang r-cran-rmarkdown 67s r-cran-robustbase r-cran-rocr r-cran-rpart r-cran-rprojroot r-cran-rspectra 67s r-cran-rsvd r-cran-rtsne r-cran-runit r-cran-sandwich r-cran-sass 67s r-cran-scales r-cran-scattermore r-cran-sctransform r-cran-segmented 67s r-cran-seurat r-cran-seuratobject r-cran-shape r-cran-shiny r-cran-shinyjs 67s r-cran-sitmo r-cran-slam r-cran-sn r-cran-snow r-cran-sourcetools r-cran-sp 67s r-cran-spam r-cran-sparsem r-cran-spatstat.data r-cran-spatstat.explore 67s r-cran-spatstat.geom r-cran-spatstat.random r-cran-spatstat.sparse 67s r-cran-spatstat.utils r-cran-squarem r-cran-statmod r-cran-stringi 67s r-cran-stringr r-cran-survival r-cran-sys r-cran-systemfonts r-cran-tensor 67s r-cran-testthat r-cran-textshaping r-cran-tfisher r-cran-th.data 67s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-timechange 67s r-cran-timedate r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-uwot 67s r-cran-vctrs r-cran-vgam r-cran-vipor r-cran-viridis r-cran-viridislite 67s r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml 67s r-cran-zoo unzip x11-common xdg-utils zip zlib1g-dev 67s The following packages will be upgraded: 67s gcc-14-base libatomic1 libgcc-s1 libstdc++6 68s 4 upgraded, 371 newly installed, 0 to remove and 126 not upgraded. 68s Need to get 414 MB of archives. 68s After this operation, 1094 MB of additional disk space will be used. 68s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 gcc-14-base amd64 14.2.0-13ubuntu1 [53.0 kB] 68s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libstdc++6 amd64 14.2.0-13ubuntu1 [787 kB] 69s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libatomic1 amd64 14.2.0-13ubuntu1 [10.3 kB] 69s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgcc-s1 amd64 14.2.0-13ubuntu1 [78.2 kB] 69s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 69s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 69s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 69s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 69s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 69s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 69s Get:11 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 69s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 69s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 11+nmu1 [5936 B] 69s Get:14 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 69s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgomp1 amd64 14.2.0-13ubuntu1 [148 kB] 69s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsuitesparseconfig7 amd64 1:7.8.3+dfsg-2 [13.4 kB] 69s Get:17 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamd3 amd64 1:7.8.3+dfsg-2 [31.1 kB] 69s Get:18 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libasan8 amd64 14.2.0-13ubuntu1 [2998 kB] 69s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-4 [332 kB] 69s Get:20 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libitm1 amd64 14.2.0-13ubuntu1 [29.1 kB] 69s Get:21 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 liblsan0 amd64 14.2.0-13ubuntu1 [1317 kB] 69s Get:22 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libtsan2 amd64 14.2.0-13ubuntu1 [2732 kB] 69s Get:23 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libubsan1 amd64 14.2.0-13ubuntu1 [1177 kB] 69s Get:24 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libhwasan0 amd64 14.2.0-13ubuntu1 [1634 kB] 69s Get:25 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libquadmath0 amd64 14.2.0-13ubuntu1 [153 kB] 69s Get:26 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgcc-14-dev amd64 14.2.0-13ubuntu1 [2815 kB] 69s Get:27 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libstdc++-14-dev amd64 14.2.0-13ubuntu1 [2508 kB] 69s Get:28 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost1.83-dev amd64 1.83.0-4ubuntu2 [10.7 MB] 69s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 69s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 69s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 69s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 69s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 69s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 69s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libcolamd3 amd64 1:7.8.3+dfsg-2 [19.5 kB] 69s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 69s Get:37 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 69s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libfftw3-double3 amd64 3.3.10-2fakesync1build1 [839 kB] 70s Get:39 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgfortran5 amd64 14.2.0-13ubuntu1 [909 kB] 70s Get:40 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libltdl7 amd64 2.5.4-2 [46.0 kB] 70s Get:41 http://ftpmaster.internal/ubuntu plucky/universe amd64 libglpk40 amd64 5.0-1build2 [369 kB] 70s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 70s Get:43 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 70s Get:44 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 70s Get:45 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-5ubuntu1 [1367 kB] 70s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-5ubuntu1 [59.5 kB] 70s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 70s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 70s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 70s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 70s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 70s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 70s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 70s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 70s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 70s Get:56 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 70s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 70s Get:58 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 70s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 70s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 70s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 70s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 70s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 70s Get:64 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 70s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-4 [3177 kB] 70s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 70s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 70s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 70s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 70s Get:70 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpango-1.0-0 amd64 1.56.0-3 [255 kB] 70s Get:71 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpangoft2-1.0-0 amd64 1.56.0-3 [52.5 kB] 70s Get:72 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpangocairo-1.0-0 amd64 1.56.0-3 [29.1 kB] 70s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 70s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 70s Get:75 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 70s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 70s Get:77 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 70s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 70s Get:79 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 70s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 70s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 70s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 70s Get:83 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 70s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 70s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu1 [185 kB] 70s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 70s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-0ubuntu1 [67.5 kB] 70s Get:88 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-base-core amd64 4.4.2-1build1 [28.9 MB] 73s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 73s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 73s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 73s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 73s Get:93 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 73s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 73s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 76s Get:96 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 76s Get:97 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 77s Get:98 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 77s Get:99 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 77s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 77s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 77s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 77s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 78s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 78s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 78s Get:106 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 78s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.0-1 [221 kB] 78s Get:108 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 78s Get:109 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-graph amd64 1.84.1-1 [1298 kB] 78s Get:110 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-rbgl amd64 1.82.0+dfsg-2 [588 kB] 78s Get:111 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml amd64 3.99-0.18-1 [1748 kB] 79s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bitops amd64 1.0-8-1 [30.3 kB] 79s Get:113 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB] 79s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-runit all 0.4.33-1 [377 kB] 79s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 79s Get:116 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biocviews all 1.74.0-2 [670 kB] 79s Get:117 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB] 79s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 79s Get:119 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 79s Get:120 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 79s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 5.2.3+dfsg-1ubuntu1 [180 kB] 79s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.8.9+dfsg-1 [445 kB] 79s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 79s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 79s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 79s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.2.0+dfsg-1 [405 kB] 79s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 79s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 80s Get:129 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 80s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 81s Get:131 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-genomeinfodb all 1.42.1+dfsg-2 [3883 kB] 82s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 82s Get:133 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 84s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 84s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-1-1 [4199 kB] 84s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.4.1-1 [513 kB] 84s Get:137 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-matrixgenerics all 1.18.0-2 [446 kB] 84s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 84s Get:139 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 84s Get:140 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-sparsearray amd64 1.6.0+dfsg-2 [1392 kB] 84s Get:141 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 85s Get:142 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB] 85s Get:143 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 85s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-locfit amd64 1.5-9.10-1 [518 kB] 85s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.3-1 [1348 kB] 85s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 85s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.4-1 [1708 kB] 86s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 86s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 86s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 86s Get:151 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 86s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.166-1 [2314 kB] 86s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 87s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 87s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 87s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 87s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB] 87s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 87s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 87s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 87s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 87s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 87s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 87s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 88s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 88s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 88s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 88s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 88s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 88s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 88s Get:171 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 89s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpparmadillo amd64 14.2.2-1-1 [864 kB] 89s Get:173 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-deseq2 amd64 1.46.0+dfsg-2 [1250 kB] 89s Get:174 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB] 89s Get:175 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB] 89s Get:176 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB] 90s Get:177 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-hsmmsinglecell all 1.26.0-2 [16.7 MB] 92s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 92s Get:179 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-limma amd64 3.62.2+dfsg-1 [1969 kB] 92s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vgam amd64 1.1-11-1 [7726 kB] 93s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-irlba amd64 2.3.5.1-4 [295 kB] 93s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 93s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ddrtree amd64 0.1.5-2 [154 kB] 93s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-igraph amd64 2.0.3-1 [5098 kB] 94s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 94s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cluster amd64 2.1.8-1 [579 kB] 94s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-combinat all 0.0-8-7build1 [43.1 kB] 94s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastica amd64 1.2-7-1 [46.6 kB] 94s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rtsne amd64 0.17-1 [109 kB] 94s Get:190 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB] 94s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 94s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-reshape2 amd64 1.4.4-2build1 [114 kB] 94s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-leidenbase amd64 0.1.27-1 [2366 kB] 94s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 94s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 94s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 95s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pheatmap all 1.0.12-2build1 [78.2 kB] 95s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 95s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-slam amd64 0.1-55-1 [188 kB] 95s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 95s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 95s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rann amd64 2.6.2-1 [46.3 kB] 95s Get:203 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-monocle amd64 2.34.0-2 [1522 kB] 96s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB] 97s Get:205 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-multtest amd64 2.62.0-2 [844 kB] 97s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB] 97s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 97s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 97s Get:209 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-rtracklayer amd64 1.66.0-2 [5227 kB] 97s Get:210 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-singlecellexperiment all 1.28.1+ds-2 [829 kB] 97s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 97s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ape amd64 5.8-1 [2923 kB] 97s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 97s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-beeswarm amd64 0.4.0-1 [82.3 kB] 97s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 97s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 97s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 97s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 97s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 97s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 97s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 97s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 97s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.4+dfsg-1 [245 kB] 97s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 97s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 98s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.7.0+dfsg-1 [4255 kB] 98s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cairo amd64 1.6-2-1 [88.8 kB] 98s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.8.0-1 [395 kB] 98s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.4-1 [353 kB] 98s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 98s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 98s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-e1071 amd64 1.7-16-1 [565 kB] 98s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-iterators all 1.0.14-1 [336 kB] 98s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-foreach all 1.5.2-1 [124 kB] 98s Get:235 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-data.table amd64 1.16.4+dfsg-1 [2032 kB] 98s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-modelmetrics amd64 1.2.2.2-1build1 [128 kB] 98s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-proc amd64 1.18.5-1 [966 kB] 98s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tzdb amd64 0.4.0-2 [521 kB] 98s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-clock amd64 0.7.1-1 [1804 kB] 98s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gower amd64 1.0.1-1 [207 kB] 98s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-hardhat all 1.4.0+dfsg-1 [565 kB] 98s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB] 98s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nnet amd64 7.3-20-1 [116 kB] 98s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shape all 1.4.6.1-1 [749 kB] 98s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diagram all 1.6.5-2 [656 kB] 98s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernsmooth amd64 2.23-26-1 [94.5 kB] 98s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-globals all 0.16.3-1 [120 kB] 98s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 98s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-parallelly amd64 1.38.0-1 [385 kB] 98s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 98s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future.apply all 1.11.2+dfsg-1 [172 kB] 98s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-numderiv all 2016.8-1.1-3 [115 kB] 98s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-progressr all 0.14.0-1 [338 kB] 98s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-squarem all 2021.1-1 [179 kB] 98s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lava all 1.7.3+dfsg-1 [2166 kB] 98s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-prodlim amd64 2024.06.25-1 [415 kB] 98s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ipred amd64 0.9-15-1 [386 kB] 98s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-timechange amd64 0.3.0-1 [178 kB] 98s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lubridate amd64 1.9.3+dfsg-1 [1010 kB] 98s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 98s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 98s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-timedate amd64 4041.110-1 [1208 kB] 98s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-recipes all 1.1.0+dfsg-1 [2035 kB] 98s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-caret amd64 6.0-94+dfsg-1 [3434 kB] 98s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-catools amd64 1.18.2-1 [201 kB] 98s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.0-1 [111 kB] 98s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.49+dfsg-1 [545 kB] 99s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 99s Get:269 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 99s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 99s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 99s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.53-1 [145 kB] 99s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 99s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 99s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.0+dfsg-1 [287 kB] 99s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 99s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 99s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 99s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 99s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 99s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.9.1+dfsg-1 [3111 kB] 99s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.28+dfsg-1 [1501 kB] 99s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 99s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-miniui all 0.1.1.1-3build1 [36.1 kB] 99s Get:285 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shinyjs all 2.1.0-1 [967 kB] 99s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colourpicker all 1.3.0+dfsg-1 [1191 kB] 99s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-conquer amd64 1.3.3-1 [499 kB] 99s Get:288 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cowplot all 1.1.3+dfsg-1 [614 kB] 99s Get:289 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 99s Get:290 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 99s Get:291 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 99s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deoptimr all 1.1-3-1-1 [76.6 kB] 99s Get:293 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 99s Get:294 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 99s Get:295 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dotcall64 amd64 1.1-1-1 [38.1 kB] 99s Get:296 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sitmo amd64 2.0.2-1 [130 kB] 99s Get:297 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dqrng amd64 0.3.2+dfsg-1 [161 kB] 99s Get:298 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastdummies all 1.7.4-1 [49.7 kB] 99s Get:299 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fitdistrplus all 1.2-1-1 [2038 kB] 99s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB] 99s Get:301 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtools amd64 3.9.5-1 [340 kB] 99s Get:302 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gdata all 3.0.1-1 [491 kB] 99s Get:303 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vipor all 0.4.7-1 [4624 kB] 100s Get:304 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggbeeswarm all 0.7.2-1 [1732 kB] 100s Get:305 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 100s Get:306 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-systemfonts amd64 1.1.0-1 [245 kB] 100s Get:307 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-textshaping amd64 0.3.7-2 [95.5 kB] 100s Get:308 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ragg amd64 1.3.3-1 [510 kB] 100s Get:309 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggrastr all 1.0.2-1 [2566 kB] 101s Get:310 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggrepel amd64 0.9.5-2 [254 kB] 101s Get:311 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggridges all 0.5.6-1 [2195 kB] 101s Get:312 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-goftest amd64 1.2-3-1 [59.5 kB] 101s Get:313 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gplots all 3.2.0-1 [484 kB] 101s Get:314 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-hdf5r amd64 1.3.11+dfsg-1 [1979 kB] 101s Get:315 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 101s Get:316 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-here all 1.0.1-2 [50.3 kB] 101s Get:317 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ica all 1.0-3-1 [85.4 kB] 101s Get:318 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernlab amd64 0.9-33-1 [1947 kB] 101s Get:319 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpptoml amd64 0.2.2+dfsg-1 [110 kB] 101s Get:320 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-reticulate amd64 1.39.0+dfsg-1 [1238 kB] 102s Get:321 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-leiden all 0.4.3.1+dfsg-1 [71.9 kB] 102s Get:322 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-zoo amd64 1.8-12-2 [984 kB] 102s Get:323 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lmtest amd64 0.9.40-1 [396 kB] 102s Get:324 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mathjaxr all 1.6-0-1 [605 kB] 102s Get:325 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixmodels all 0.5-3-1 [361 kB] 102s Get:326 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rbibutils amd64 2.3-1 [1023 kB] 102s Get:327 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rdpack all 2.6.2-1 [757 kB] 102s Get:328 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mnormt amd64 2.1.1-2 [170 kB] 102s Get:329 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sparsem amd64 1.84-2-1 [813 kB] 102s Get:330 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-quantreg amd64 5.99.1-1 [1455 kB] 102s Get:331 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sn all 2.1.1-2 [1815 kB] 103s Get:332 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-mvtnorm amd64 1.3-3-1 [923 kB] 103s Get:333 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tfisher all 0.2.0-3 [79.8 kB] 103s Get:334 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plotrix all 3.8-4-1 [1120 kB] 103s Get:335 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-th.data all 1.1-2-2 [8794 kB] 104s Get:336 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sandwich all 3.1-1-1 [1483 kB] 104s Get:337 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-multcomp all 1.4-26-2 [699 kB] 104s Get:338 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mutoss all 0.1-13-1 [1123 kB] 104s Get:339 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-robustbase amd64 0.99-4-1-1 [3038 kB] 105s Get:340 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-qqconf amd64 1.3.2+dfsg-1 [157 kB] 105s Get:341 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-metap all 1.11-1 [570 kB] 105s Get:342 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plotly all 4.10.4+dfsg-2 [3666 kB] 105s Get:343 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-segmented all 2.1-3-1 [1366 kB] 105s Get:344 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mixtools amd64 2.0.0-1 [1399 kB] 106s Get:345 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-patchwork all 1.3.0-1 [3220 kB] 106s Get:346 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 106s Get:347 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.4-1 [212 kB] 106s Get:348 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 106s Get:349 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB] 106s Get:350 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 106s Get:351 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 106s Get:352 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.oo all 1.26.0-1 [955 kB] 106s Get:353 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.utils all 2.12.3-1 [1386 kB] 106s Get:354 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppannoy amd64 0.0.22-1 [235 kB] 106s Get:355 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpphnsw amd64 0.5.0+ds-1 [171 kB] 106s Get:356 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppprogress all 0.4.2-2build1 [22.0 kB] 106s Get:357 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rocr all 1.0-11-3 [456 kB] 106s Get:358 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rspectra amd64 0.16-2-1 [448 kB] 106s Get:359 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsvd all 1.0.5-1 [3589 kB] 107s Get:360 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scattermore amd64 1.2-1 [331 kB] 107s Get:361 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sctransform amd64 0.4.1-1 [504 kB] 107s Get:362 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sp amd64 1:2.1-4+dfsg-1 [1472 kB] 107s Get:363 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spam amd64 2.11-0-1 [2758 kB] 108s Get:364 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-seuratobject amd64 5.0.2-1 [1744 kB] 108s Get:365 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.utils amd64 3.1-0-1 [381 kB] 108s Get:366 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.data all 3.1-2-1 [4039 kB] 109s Get:367 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.geom amd64 3.2-9-2 [3946 kB] 109s Get:368 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.random amd64 3.2-3-1 [1169 kB] 109s Get:369 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tensor all 1.5-4 [15.7 kB] 109s Get:370 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.sparse amd64 3.0-3-1 [215 kB] 109s Get:371 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.explore amd64 3.2-7-1 [3432 kB] 110s Get:372 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-uwot amd64 0.2.2-1 [947 kB] 110s Get:373 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-seurat amd64 5.1.0-1 [3255 kB] 110s Get:374 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-1 [150 kB] 110s Get:375 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.1.1-1 [1636 kB] 111s Preconfiguring packages ... 111s Fetched 414 MB in 43s (9642 kB/s) 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 111s Preparing to unpack .../gcc-14-base_14.2.0-13ubuntu1_amd64.deb ... 111s Unpacking gcc-14-base:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 111s Setting up gcc-14-base:amd64 (14.2.0-13ubuntu1) ... 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 111s Preparing to unpack .../libstdc++6_14.2.0-13ubuntu1_amd64.deb ... 111s Unpacking libstdc++6:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 112s Setting up libstdc++6:amd64 (14.2.0-13ubuntu1) ... 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 112s Preparing to unpack .../libatomic1_14.2.0-13ubuntu1_amd64.deb ... 112s Unpacking libatomic1:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 112s Preparing to unpack .../libgcc-s1_14.2.0-13ubuntu1_amd64.deb ... 112s Unpacking libgcc-s1:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 112s Setting up libgcc-s1:amd64 (14.2.0-13ubuntu1) ... 112s Selecting previously unselected package fonts-dejavu-mono. 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 112s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8_all.deb ... 112s Unpacking fonts-dejavu-mono (2.37-8) ... 112s Selecting previously unselected package fonts-dejavu-core. 112s Preparing to unpack .../001-fonts-dejavu-core_2.37-8_all.deb ... 112s Unpacking fonts-dejavu-core (2.37-8) ... 112s Selecting previously unselected package fontconfig-config. 112s Preparing to unpack .../002-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 112s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 112s Selecting previously unselected package libfontconfig1:amd64. 112s Preparing to unpack .../003-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 112s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 112s Selecting previously unselected package fontconfig. 112s Preparing to unpack .../004-fontconfig_2.15.0-1.1ubuntu2_amd64.deb ... 112s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 112s Selecting previously unselected package fonts-font-awesome. 112s Preparing to unpack .../005-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 112s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 112s Selecting previously unselected package fonts-glyphicons-halflings. 112s Preparing to unpack .../006-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 112s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 112s Selecting previously unselected package fonts-mathjax. 112s Preparing to unpack .../007-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 112s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 112s Selecting previously unselected package javascript-common. 112s Preparing to unpack .../008-javascript-common_11+nmu1_all.deb ... 112s Unpacking javascript-common (11+nmu1) ... 112s Selecting previously unselected package libaec0:amd64. 112s Preparing to unpack .../009-libaec0_1.1.3-1_amd64.deb ... 112s Unpacking libaec0:amd64 (1.1.3-1) ... 112s Selecting previously unselected package libgomp1:amd64. 112s Preparing to unpack .../010-libgomp1_14.2.0-13ubuntu1_amd64.deb ... 112s Unpacking libgomp1:amd64 (14.2.0-13ubuntu1) ... 112s Selecting previously unselected package libsuitesparseconfig7:amd64. 112s Preparing to unpack .../011-libsuitesparseconfig7_1%3a7.8.3+dfsg-2_amd64.deb ... 112s Unpacking libsuitesparseconfig7:amd64 (1:7.8.3+dfsg-2) ... 112s Selecting previously unselected package libamd3:amd64. 112s Preparing to unpack .../012-libamd3_1%3a7.8.3+dfsg-2_amd64.deb ... 112s Unpacking libamd3:amd64 (1:7.8.3+dfsg-2) ... 113s Selecting previously unselected package libasan8:amd64. 113s Preparing to unpack .../013-libasan8_14.2.0-13ubuntu1_amd64.deb ... 113s Unpacking libasan8:amd64 (14.2.0-13ubuntu1) ... 113s Selecting previously unselected package libblas3:amd64. 113s Preparing to unpack .../014-libblas3_3.12.0-4_amd64.deb ... 113s Unpacking libblas3:amd64 (3.12.0-4) ... 113s Selecting previously unselected package libitm1:amd64. 113s Preparing to unpack .../015-libitm1_14.2.0-13ubuntu1_amd64.deb ... 113s Unpacking libitm1:amd64 (14.2.0-13ubuntu1) ... 113s Selecting previously unselected package liblsan0:amd64. 113s Preparing to unpack .../016-liblsan0_14.2.0-13ubuntu1_amd64.deb ... 113s Unpacking liblsan0:amd64 (14.2.0-13ubuntu1) ... 113s Selecting previously unselected package libtsan2:amd64. 113s Preparing to unpack .../017-libtsan2_14.2.0-13ubuntu1_amd64.deb ... 113s Unpacking libtsan2:amd64 (14.2.0-13ubuntu1) ... 113s Selecting previously unselected package libubsan1:amd64. 113s Preparing to unpack .../018-libubsan1_14.2.0-13ubuntu1_amd64.deb ... 113s Unpacking libubsan1:amd64 (14.2.0-13ubuntu1) ... 113s Selecting previously unselected package libhwasan0:amd64. 113s Preparing to unpack .../019-libhwasan0_14.2.0-13ubuntu1_amd64.deb ... 113s Unpacking libhwasan0:amd64 (14.2.0-13ubuntu1) ... 113s Selecting previously unselected package libquadmath0:amd64. 113s Preparing to unpack .../020-libquadmath0_14.2.0-13ubuntu1_amd64.deb ... 113s Unpacking libquadmath0:amd64 (14.2.0-13ubuntu1) ... 113s Selecting previously unselected package libgcc-14-dev:amd64. 113s Preparing to unpack .../021-libgcc-14-dev_14.2.0-13ubuntu1_amd64.deb ... 113s Unpacking libgcc-14-dev:amd64 (14.2.0-13ubuntu1) ... 113s Selecting previously unselected package libstdc++-14-dev:amd64. 113s Preparing to unpack .../022-libstdc++-14-dev_14.2.0-13ubuntu1_amd64.deb ... 113s Unpacking libstdc++-14-dev:amd64 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previously unselected package libxrender1:amd64. 116s Preparing to unpack .../028-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 116s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 116s Selecting previously unselected package libcairo2:amd64. 116s Preparing to unpack .../029-libcairo2_1.18.2-2_amd64.deb ... 116s Unpacking libcairo2:amd64 (1.18.2-2) ... 116s Selecting previously unselected package libcolamd3:amd64. 116s Preparing to unpack .../030-libcolamd3_1%3a7.8.3+dfsg-2_amd64.deb ... 116s Unpacking libcolamd3:amd64 (1:7.8.3+dfsg-2) ... 116s Selecting previously unselected package libdatrie1:amd64. 116s Preparing to unpack .../031-libdatrie1_0.2.13-3build1_amd64.deb ... 116s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 116s Selecting previously unselected package libdeflate0:amd64. 116s Preparing to unpack .../032-libdeflate0_1.23-1_amd64.deb ... 116s Unpacking libdeflate0:amd64 (1.23-1) ... 116s Selecting previously unselected package libfftw3-double3:amd64. 116s Preparing 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118s Preparing to unpack .../075-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 118s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 118s Selecting previously unselected package libxft2:amd64. 118s Preparing to unpack .../076-libxft2_2.3.6-1build1_amd64.deb ... 118s Unpacking libxft2:amd64 (2.3.6-1build1) ... 118s Selecting previously unselected package libxss1:amd64. 118s Preparing to unpack .../077-libxss1_1%3a1.2.3-1build3_amd64.deb ... 118s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 118s Selecting previously unselected package libtk8.6:amd64. 118s Preparing to unpack .../078-libtk8.6_8.6.16-1_amd64.deb ... 118s Unpacking libtk8.6:amd64 (8.6.16-1) ... 118s Selecting previously unselected package libxt6t64:amd64. 118s Preparing to unpack .../079-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 118s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 118s Selecting previously unselected package zip. 118s Preparing to unpack .../080-zip_3.0-14ubuntu1_amd64.deb ... 118s Unpacking zip (3.0-14ubuntu1) ... 118s Selecting previously unselected package unzip. 118s Preparing to unpack .../081-unzip_6.0-28ubuntu6_amd64.deb ... 118s Unpacking unzip (6.0-28ubuntu6) ... 118s Selecting previously unselected package xdg-utils. 118s Preparing to unpack .../082-xdg-utils_1.2.1-0ubuntu1_all.deb ... 118s Unpacking xdg-utils (1.2.1-0ubuntu1) ... 118s Selecting previously unselected package r-base-core. 118s Preparing to unpack .../083-r-base-core_4.4.2-1build1_amd64.deb ... 118s Unpacking r-base-core (4.4.2-1build1) ... 118s Selecting previously unselected package r-cran-littler. 118s Preparing to unpack .../084-r-cran-littler_0.3.20-2_amd64.deb ... 118s Unpacking r-cran-littler (0.3.20-2) ... 119s Selecting previously unselected package littler. 119s Preparing to unpack .../085-littler_0.3.20-2_all.deb ... 119s Unpacking littler (0.3.20-2) ... 119s Selecting previously unselected package node-bootstrap-sass. 119s Preparing to unpack .../086-node-bootstrap-sass_3.4.3-2_all.deb 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r-bioc-biobase. 120s Preparing to unpack .../092-r-bioc-biobase_2.66.0-2_amd64.deb ... 120s Unpacking r-bioc-biobase (2.66.0-2) ... 120s Selecting previously unselected package r-bioc-s4vectors. 120s Preparing to unpack .../093-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 120s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 120s Selecting previously unselected package r-bioc-biocio. 120s Preparing to unpack .../094-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 120s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 120s Selecting previously unselected package r-cran-formatr. 120s Preparing to unpack .../095-r-cran-formatr_1.14-2_all.deb ... 120s Unpacking r-cran-formatr (1.14-2) ... 120s Selecting previously unselected package r-cran-lambda.r. 120s Preparing to unpack .../096-r-cran-lambda.r_1.2.4-2build1_all.deb ... 120s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 120s Selecting previously unselected package r-cran-futile.options. 120s Preparing to unpack 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Selecting previously unselected package r-bioc-biocparallel. 120s Preparing to unpack .../103-r-bioc-biocparallel_1.40.0-2_amd64.deb ... 120s Unpacking r-bioc-biocparallel (1.40.0-2) ... 120s Selecting previously unselected package r-bioc-graph. 120s Preparing to unpack .../104-r-bioc-graph_1.84.1-1_amd64.deb ... 120s Unpacking r-bioc-graph (1.84.1-1) ... 120s Selecting previously unselected package r-bioc-rbgl. 120s Preparing to unpack .../105-r-bioc-rbgl_1.82.0+dfsg-2_amd64.deb ... 120s Unpacking r-bioc-rbgl (1.82.0+dfsg-2) ... 120s Selecting previously unselected package r-cran-xml. 120s Preparing to unpack .../106-r-cran-xml_3.99-0.18-1_amd64.deb ... 120s Unpacking r-cran-xml (3.99-0.18-1) ... 120s Selecting previously unselected package r-cran-bitops. 120s Preparing to unpack .../107-r-cran-bitops_1.0-8-1_amd64.deb ... 120s Unpacking r-cran-bitops (1.0-8-1) ... 120s Selecting previously unselected package r-cran-rcurl. 120s Preparing to unpack .../108-r-cran-rcurl_1.98-1.16+dfsg-1_amd64.deb ... 120s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 120s Selecting previously unselected package r-cran-runit. 120s Preparing to unpack .../109-r-cran-runit_0.4.33-1_all.deb ... 120s Unpacking r-cran-runit (0.4.33-1) ... 120s Selecting previously unselected package r-cran-biocmanager. 120s Preparing to unpack .../110-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 120s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 120s Selecting previously unselected package r-bioc-biocviews. 120s Preparing to unpack .../111-r-bioc-biocviews_1.74.0-2_all.deb ... 120s Unpacking r-bioc-biocviews (1.74.0-2) ... 120s Selecting previously unselected package r-bioc-iranges. 120s Preparing to unpack .../112-r-bioc-iranges_2.40.1-2_amd64.deb ... 120s Unpacking r-bioc-iranges (2.40.1-2) ... 120s Selecting previously unselected package zlib1g-dev:amd64. 120s Preparing to unpack .../113-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 120s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 120s Selecting previously unselected package r-bioc-zlibbioc. 120s Preparing to unpack .../114-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 120s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 121s Selecting previously unselected package r-bioc-xvector. 121s Preparing to unpack .../115-r-bioc-xvector_0.46.0-2_amd64.deb ... 121s Unpacking r-bioc-xvector (0.46.0-2) ... 121s Selecting previously unselected package r-cran-curl. 121s Preparing to unpack .../116-r-cran-curl_5.2.3+dfsg-1ubuntu1_amd64.deb ... 121s Unpacking r-cran-curl (5.2.3+dfsg-1ubuntu1) ... 121s Selecting previously unselected package r-cran-jsonlite. 121s Preparing to unpack .../117-r-cran-jsonlite_1.8.9+dfsg-1_amd64.deb ... 121s Unpacking r-cran-jsonlite (1.8.9+dfsg-1) ... 121s Selecting previously unselected package r-cran-mime. 121s Preparing to unpack .../118-r-cran-mime_0.12-2_amd64.deb ... 121s Unpacking r-cran-mime (0.12-2) ... 121s Selecting previously unselected package r-cran-sys. 121s Preparing to unpack .../119-r-cran-sys_3.4.3-1_amd64.deb ... 121s Unpacking r-cran-sys (3.4.3-1) ... 121s Selecting previously unselected package r-cran-askpass. 121s Preparing to unpack .../120-r-cran-askpass_1.2.1-1_amd64.deb ... 121s Unpacking r-cran-askpass (1.2.1-1) ... 121s Selecting previously unselected package r-cran-openssl. 121s Preparing to unpack .../121-r-cran-openssl_2.2.0+dfsg-1_amd64.deb ... 121s Unpacking r-cran-openssl (2.2.0+dfsg-1) ... 121s Selecting previously unselected package r-cran-r6. 121s Preparing to unpack .../122-r-cran-r6_2.5.1-1_all.deb ... 121s Unpacking r-cran-r6 (2.5.1-1) ... 121s Selecting previously unselected package r-cran-httr. 121s Preparing to unpack .../123-r-cran-httr_1.4.7+dfsg-1_all.deb ... 121s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 121s Selecting previously unselected package r-bioc-ucsc.utils. 121s Preparing to unpack .../124-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 121s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 121s Selecting previously unselected package r-bioc-genomeinfodbdata. 121s Preparing to unpack .../125-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 121s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 121s Selecting previously unselected package r-bioc-genomeinfodb. 121s Preparing to unpack .../126-r-bioc-genomeinfodb_1.42.1+dfsg-2_all.deb ... 121s Unpacking r-bioc-genomeinfodb (1.42.1+dfsg-2) ... 121s Selecting previously unselected package r-cran-crayon. 121s Preparing to unpack .../127-r-cran-crayon_1.5.2-1_all.deb ... 121s Unpacking r-cran-crayon (1.5.2-1) ... 121s Selecting previously unselected package r-bioc-biostrings. 121s Preparing to unpack .../128-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 121s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 121s Selecting previously unselected package r-cran-lattice. 121s Preparing to unpack .../129-r-cran-lattice_0.22-6-1_amd64.deb ... 121s Unpacking r-cran-lattice (0.22-6-1) ... 121s Selecting previously unselected package r-cran-matrix. 121s Preparing to unpack .../130-r-cran-matrix_1.7-1-1_amd64.deb ... 121s Unpacking r-cran-matrix (1.7-1-1) ... 121s Selecting previously unselected package r-cran-matrixstats. 121s Preparing to unpack .../131-r-cran-matrixstats_1.4.1-1_amd64.deb ... 121s Unpacking r-cran-matrixstats (1.4.1-1) ... 121s Selecting previously unselected package r-bioc-matrixgenerics. 121s Preparing to unpack .../132-r-bioc-matrixgenerics_1.18.0-2_all.deb ... 121s Unpacking r-bioc-matrixgenerics (1.18.0-2) ... 121s Selecting previously unselected package r-cran-abind. 121s Preparing to unpack .../133-r-cran-abind_1.4-8-1_all.deb ... 121s Unpacking r-cran-abind (1.4-8-1) ... 121s Selecting previously unselected package r-bioc-s4arrays. 121s Preparing to unpack .../134-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ... 121s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 121s Selecting previously unselected package r-bioc-sparsearray. 121s Preparing to unpack .../135-r-bioc-sparsearray_1.6.0+dfsg-2_amd64.deb ... 121s Unpacking r-bioc-sparsearray (1.6.0+dfsg-2) ... 121s Selecting previously unselected package r-bioc-delayedarray. 121s Preparing to unpack .../136-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ... 121s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 122s Selecting previously unselected package r-bioc-genomicranges. 122s Preparing to unpack .../137-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ... 122s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 122s Selecting previously unselected package r-bioc-summarizedexperiment. 122s Preparing to unpack .../138-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 122s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 122s Selecting previously unselected package r-cran-locfit. 122s Preparing to unpack .../139-r-cran-locfit_1.5-9.10-1_amd64.deb ... 122s Unpacking r-cran-locfit (1.5-9.10-1) ... 122s Selecting previously unselected package r-cran-cli. 122s Preparing to unpack .../140-r-cran-cli_3.6.3-1_amd64.deb ... 122s Unpacking r-cran-cli (3.6.3-1) ... 122s Selecting previously unselected package r-cran-glue. 122s Preparing to unpack .../141-r-cran-glue_1.8.0-1_amd64.deb ... 122s Unpacking r-cran-glue (1.8.0-1) ... 122s Selecting previously unselected package r-cran-rlang. 122s Preparing to unpack .../142-r-cran-rlang_1.1.4-1_amd64.deb ... 122s Unpacking r-cran-rlang (1.1.4-1) ... 122s Selecting previously unselected package r-cran-lifecycle. 122s Preparing to unpack .../143-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 122s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 122s Selecting previously unselected package r-cran-gtable. 122s Preparing to unpack .../144-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 122s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 122s Selecting previously unselected package r-cran-isoband. 122s Preparing to unpack .../145-r-cran-isoband_0.2.7-1_amd64.deb ... 122s Unpacking r-cran-isoband (0.2.7-1) ... 122s Selecting previously unselected package r-cran-mass. 122s Preparing to unpack .../146-r-cran-mass_7.3-64-1_amd64.deb ... 122s Unpacking r-cran-mass (7.3-64-1) ... 122s Selecting previously unselected package r-cran-nlme. 122s Preparing to unpack .../147-r-cran-nlme_3.1.166-1_amd64.deb ... 122s Unpacking r-cran-nlme (3.1.166-1) ... 122s Selecting previously unselected package r-cran-mgcv. 122s Preparing to unpack .../148-r-cran-mgcv_1.9-1-1_amd64.deb ... 122s Unpacking r-cran-mgcv (1.9-1-1) ... 122s Selecting previously unselected package r-cran-farver. 122s Preparing to unpack .../149-r-cran-farver_2.1.2-1_amd64.deb ... 122s Unpacking r-cran-farver (2.1.2-1) ... 122s Selecting previously unselected package r-cran-labeling. 122s Preparing to unpack .../150-r-cran-labeling_0.4.3-1_all.deb ... 122s Unpacking r-cran-labeling (0.4.3-1) ... 122s Selecting previously unselected package r-cran-colorspace. 122s Preparing to unpack .../151-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ... 122s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 122s Selecting previously unselected package r-cran-munsell. 122s Preparing to unpack .../152-r-cran-munsell_0.5.1-1_all.deb ... 122s Unpacking r-cran-munsell (0.5.1-1) ... 122s Selecting previously unselected package r-cran-rcolorbrewer. 122s Preparing to unpack .../153-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 122s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 122s Selecting previously unselected package r-cran-viridislite. 122s Preparing to unpack .../154-r-cran-viridislite_0.4.2-2_all.deb ... 122s Unpacking r-cran-viridislite (0.4.2-2) ... 122s Selecting previously unselected package r-cran-scales. 122s Preparing to unpack .../155-r-cran-scales_1.3.0-1_all.deb ... 122s Unpacking r-cran-scales (1.3.0-1) ... 123s Selecting previously unselected package r-cran-fansi. 123s Preparing to unpack .../156-r-cran-fansi_1.0.5-1_amd64.deb ... 123s Unpacking r-cran-fansi (1.0.5-1) ... 123s Selecting previously unselected package r-cran-magrittr. 123s Preparing to unpack .../157-r-cran-magrittr_2.0.3-1_amd64.deb ... 123s Unpacking r-cran-magrittr (2.0.3-1) ... 123s Selecting previously unselected package r-cran-utf8. 123s Preparing to unpack .../158-r-cran-utf8_1.2.4-1_amd64.deb ... 123s Unpacking r-cran-utf8 (1.2.4-1) ... 123s Selecting previously unselected package r-cran-vctrs. 123s Preparing to unpack .../159-r-cran-vctrs_0.6.5-1_amd64.deb ... 123s Unpacking r-cran-vctrs (0.6.5-1) ... 123s Selecting previously unselected package r-cran-pillar. 123s Preparing to unpack .../160-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 123s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 123s Selecting previously unselected package r-cran-pkgconfig. 123s Preparing to unpack .../161-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 123s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 123s Selecting previously unselected package r-cran-tibble. 123s Preparing to unpack .../162-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 123s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 123s Selecting previously unselected package r-cran-withr. 123s Preparing to unpack .../163-r-cran-withr_3.0.2+dfsg-1_all.deb ... 123s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 123s Selecting previously unselected package r-cran-ggplot2. 123s Preparing to unpack .../164-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 123s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 123s Selecting previously unselected package r-cran-pkgkitten. 123s Preparing to unpack .../165-r-cran-pkgkitten_0.2.4-1_all.deb ... 123s Unpacking r-cran-pkgkitten (0.2.4-1) ... 123s Selecting previously unselected package r-cran-rcpp. 123s Preparing to unpack .../166-r-cran-rcpp_1.0.14-1_amd64.deb ... 123s Unpacking r-cran-rcpp (1.0.14-1) ... 123s Selecting previously unselected package r-cran-rcpparmadillo. 123s Preparing to unpack .../167-r-cran-rcpparmadillo_14.2.2-1-1_amd64.deb ... 123s Unpacking r-cran-rcpparmadillo (14.2.2-1-1) ... 123s Selecting previously unselected package r-bioc-deseq2. 123s Preparing to unpack .../168-r-bioc-deseq2_1.46.0+dfsg-2_amd64.deb ... 123s Unpacking r-bioc-deseq2 (1.46.0+dfsg-2) ... 123s Selecting previously unselected package r-bioc-rhtslib. 123s Preparing to unpack .../169-r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb ... 123s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 123s Selecting previously unselected package r-bioc-rsamtools. 123s Preparing to unpack .../170-r-bioc-rsamtools_2.22.0+dfsg-2_amd64.deb ... 123s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 124s Selecting previously unselected package r-bioc-genomicalignments. 124s Preparing to unpack .../171-r-bioc-genomicalignments_1.42.0-2_amd64.deb ... 124s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 124s Selecting previously unselected package r-bioc-hsmmsinglecell. 124s Preparing to unpack .../172-r-bioc-hsmmsinglecell_1.26.0-2_all.deb ... 124s Unpacking r-bioc-hsmmsinglecell (1.26.0-2) ... 124s Selecting previously unselected package r-cran-statmod. 124s Preparing to unpack .../173-r-cran-statmod_1.5.0-1_amd64.deb ... 124s Unpacking r-cran-statmod (1.5.0-1) ... 124s Selecting previously unselected package r-bioc-limma. 124s Preparing to unpack .../174-r-bioc-limma_3.62.2+dfsg-1_amd64.deb ... 124s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 124s Selecting previously unselected package r-cran-vgam. 124s Preparing to unpack .../175-r-cran-vgam_1.1-11-1_amd64.deb ... 124s Unpacking r-cran-vgam (1.1-11-1) ... 124s Selecting previously unselected package r-cran-irlba. 124s Preparing to unpack .../176-r-cran-irlba_2.3.5.1-4_amd64.deb ... 124s Unpacking r-cran-irlba (2.3.5.1-4) ... 124s Selecting previously unselected package r-cran-rcppeigen. 124s Preparing to unpack .../177-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 124s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 124s Selecting previously unselected package r-cran-ddrtree. 124s Preparing to unpack .../178-r-cran-ddrtree_0.1.5-2_amd64.deb ... 124s Unpacking r-cran-ddrtree (0.1.5-2) ... 124s Selecting previously unselected package r-cran-igraph. 124s Preparing to unpack .../179-r-cran-igraph_2.0.3-1_amd64.deb ... 124s Unpacking r-cran-igraph (2.0.3-1) ... 124s Selecting previously unselected package r-cran-plyr. 124s Preparing to unpack .../180-r-cran-plyr_1.8.9-1_amd64.deb ... 124s Unpacking r-cran-plyr (1.8.9-1) ... 124s Selecting previously unselected package r-cran-cluster. 124s Preparing to unpack .../181-r-cran-cluster_2.1.8-1_amd64.deb ... 124s Unpacking r-cran-cluster (2.1.8-1) ... 124s Selecting previously unselected package r-cran-combinat. 124s Preparing to unpack .../182-r-cran-combinat_0.0-8-7build1_all.deb ... 124s Unpacking r-cran-combinat (0.0-8-7build1) ... 124s Selecting previously unselected package r-cran-fastica. 124s Preparing to unpack .../183-r-cran-fastica_1.2-7-1_amd64.deb ... 124s Unpacking r-cran-fastica (1.2-7-1) ... 124s Selecting previously unselected package r-cran-rtsne. 124s Preparing to unpack .../184-r-cran-rtsne_0.17-1_amd64.deb ... 124s Unpacking r-cran-rtsne (0.17-1) ... 124s Selecting previously unselected package r-cran-stringi. 124s Preparing to unpack .../185-r-cran-stringi_1.8.4-1build1_amd64.deb ... 124s Unpacking r-cran-stringi (1.8.4-1build1) ... 124s Selecting previously unselected package r-cran-stringr. 124s Preparing to unpack .../186-r-cran-stringr_1.5.1-1_all.deb ... 124s Unpacking r-cran-stringr (1.5.1-1) ... 124s Selecting previously unselected package r-cran-reshape2. 124s Preparing to unpack .../187-r-cran-reshape2_1.4.4-2build1_amd64.deb ... 124s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 124s Selecting previously unselected package r-cran-leidenbase. 124s Preparing to unpack .../188-r-cran-leidenbase_0.1.27-1_amd64.deb ... 124s Unpacking r-cran-leidenbase (0.1.27-1) ... 124s Selecting previously unselected package r-cran-generics. 124s Preparing to unpack .../189-r-cran-generics_0.1.3-1_all.deb ... 124s Unpacking r-cran-generics (0.1.3-1) ... 125s Selecting previously unselected package r-cran-tidyselect. 125s Preparing to unpack .../190-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 125s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 125s Selecting previously unselected package r-cran-dplyr. 125s Preparing to unpack .../191-r-cran-dplyr_1.1.4-4_amd64.deb ... 125s Unpacking r-cran-dplyr (1.1.4-4) ... 125s Selecting previously unselected package r-cran-pheatmap. 125s Preparing to unpack .../192-r-cran-pheatmap_1.0.12-2build1_all.deb ... 125s Unpacking r-cran-pheatmap (1.0.12-2build1) ... 125s Selecting previously unselected package r-cran-proxy. 125s Preparing to unpack .../193-r-cran-proxy_0.4-27-1_amd64.deb ... 125s Unpacking r-cran-proxy (0.4-27-1) ... 125s Selecting previously unselected package r-cran-slam. 125s Preparing to unpack .../194-r-cran-slam_0.1-55-1_amd64.deb ... 125s Unpacking r-cran-slam (0.1-55-1) ... 125s Selecting previously unselected package r-cran-gridextra. 125s Preparing to unpack .../195-r-cran-gridextra_2.3-3build1_all.deb ... 125s Unpacking r-cran-gridextra (2.3-3build1) ... 125s Selecting previously unselected package r-cran-viridis. 125s Preparing to unpack .../196-r-cran-viridis_0.6.5-1_all.deb ... 125s Unpacking r-cran-viridis (0.6.5-1) ... 125s Selecting previously unselected package r-cran-rann. 125s Preparing to unpack .../197-r-cran-rann_2.6.2-1_amd64.deb ... 125s Unpacking r-cran-rann (2.6.2-1) ... 125s Selecting previously unselected package r-bioc-monocle. 125s Preparing to unpack .../198-r-bioc-monocle_2.34.0-2_amd64.deb ... 125s Unpacking r-bioc-monocle (2.34.0-2) ... 125s Selecting previously unselected package r-cran-survival. 125s Preparing to unpack .../199-r-cran-survival_3.8-3-1_amd64.deb ... 125s Unpacking r-cran-survival (3.8-3-1) ... 125s Selecting previously unselected package r-bioc-multtest. 125s Preparing to unpack .../200-r-bioc-multtest_2.62.0-2_amd64.deb ... 125s Unpacking r-bioc-multtest (2.62.0-2) ... 125s Selecting previously unselected package r-cran-rjson. 125s Preparing to unpack .../201-r-cran-rjson_0.2.23-1_amd64.deb ... 125s Unpacking r-cran-rjson (0.2.23-1) ... 125s Selecting previously unselected package r-cran-yaml. 125s Preparing to unpack .../202-r-cran-yaml_2.3.10-1_amd64.deb ... 125s Unpacking r-cran-yaml (2.3.10-1) ... 125s Selecting previously unselected package r-cran-restfulr. 125s Preparing to unpack .../203-r-cran-restfulr_0.0.15-1_amd64.deb ... 125s Unpacking r-cran-restfulr (0.0.15-1) ... 125s Selecting previously unselected package r-bioc-rtracklayer. 125s Preparing to unpack .../204-r-bioc-rtracklayer_1.66.0-2_amd64.deb ... 125s Unpacking r-bioc-rtracklayer (1.66.0-2) ... 125s Selecting previously unselected package r-bioc-singlecellexperiment. 125s Preparing to unpack .../205-r-bioc-singlecellexperiment_1.28.1+ds-2_all.deb ... 125s Unpacking r-bioc-singlecellexperiment (1.28.1+ds-2) ... 125s Selecting previously unselected package r-cran-digest. 125s Preparing to unpack .../206-r-cran-digest_0.6.37-1_amd64.deb ... 125s Unpacking r-cran-digest (0.6.37-1) ... 125s Selecting previously unselected package r-cran-ape. 125s Preparing to unpack .../207-r-cran-ape_5.8-1_amd64.deb ... 125s Unpacking r-cran-ape (5.8-1) ... 125s Selecting previously unselected package r-cran-base64enc. 125s Preparing to unpack .../208-r-cran-base64enc_0.1-3-3_amd64.deb ... 125s Unpacking r-cran-base64enc (0.1-3-3) ... 125s Selecting previously unselected package r-cran-beeswarm. 125s Preparing to unpack .../209-r-cran-beeswarm_0.4.0-1_amd64.deb ... 125s Unpacking r-cran-beeswarm (0.4.0-1) ... 125s Selecting previously unselected package r-cran-bit. 125s Preparing to unpack .../210-r-cran-bit_4.0.5-1_amd64.deb ... 125s Unpacking r-cran-bit (4.0.5-1) ... 125s Selecting previously unselected package r-cran-bit64. 125s Preparing to unpack .../211-r-cran-bit64_4.0.5-1_amd64.deb ... 125s Unpacking r-cran-bit64 (4.0.5-1) ... 125s Selecting previously unselected package r-cran-brio. 125s Preparing to unpack .../212-r-cran-brio_1.1.5-1_amd64.deb ... 125s Unpacking r-cran-brio (1.1.5-1) ... 126s Selecting previously unselected package r-cran-fastmap. 126s Preparing to unpack .../213-r-cran-fastmap_1.2.0-1_amd64.deb ... 126s Unpacking r-cran-fastmap (1.2.0-1) ... 126s Selecting previously unselected package r-cran-cachem. 126s Preparing to unpack .../214-r-cran-cachem_1.1.0-1_amd64.deb ... 126s Unpacking r-cran-cachem (1.1.0-1) ... 126s Selecting previously unselected package r-cran-htmltools. 126s Preparing to unpack .../215-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 126s Unpacking r-cran-htmltools (0.5.8.1-1) ... 126s Selecting previously unselected package r-cran-jquerylib. 126s Preparing to unpack .../216-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 126s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 126s Selecting previously unselected package r-cran-memoise. 126s Preparing to unpack .../217-r-cran-memoise_2.0.1-1_all.deb ... 126s Unpacking r-cran-memoise (2.0.1-1) ... 126s Selecting previously unselected package r-cran-fs. 126s Preparing to unpack .../218-r-cran-fs_1.6.4+dfsg-1_amd64.deb ... 126s Unpacking r-cran-fs (1.6.4+dfsg-1) ... 126s Selecting previously unselected package r-cran-rappdirs. 126s Preparing to unpack .../219-r-cran-rappdirs_0.3.3-1_amd64.deb ... 126s Unpacking r-cran-rappdirs (0.3.3-1) ... 126s Selecting previously unselected package r-cran-sass. 126s Preparing to unpack .../220-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 126s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 126s Selecting previously unselected package r-cran-bslib. 126s Preparing to unpack .../221-r-cran-bslib_0.7.0+dfsg-1_all.deb ... 126s Unpacking r-cran-bslib (0.7.0+dfsg-1) ... 126s Selecting previously unselected package r-cran-cairo. 126s Preparing to unpack .../222-r-cran-cairo_1.6-2-1_amd64.deb ... 126s Unpacking r-cran-cairo (1.6-2-1) ... 126s Selecting previously unselected package r-cran-ps. 126s Preparing to unpack .../223-r-cran-ps_1.8.0-1_amd64.deb ... 126s Unpacking r-cran-ps (1.8.0-1) ... 126s Selecting previously unselected package r-cran-processx. 126s Preparing to unpack .../224-r-cran-processx_3.8.4-1_amd64.deb ... 126s Unpacking r-cran-processx (3.8.4-1) ... 126s Selecting previously unselected package r-cran-callr. 126s Preparing to unpack .../225-r-cran-callr_3.7.6-1_all.deb ... 126s Unpacking r-cran-callr (3.7.6-1) ... 126s Selecting previously unselected package r-cran-class. 126s Preparing to unpack .../226-r-cran-class_7.3-23-1_amd64.deb ... 126s Unpacking r-cran-class (7.3-23-1) ... 126s Selecting previously unselected package r-cran-e1071. 126s Preparing to unpack .../227-r-cran-e1071_1.7-16-1_amd64.deb ... 126s Unpacking r-cran-e1071 (1.7-16-1) ... 126s Selecting previously unselected package r-cran-iterators. 126s Preparing to unpack .../228-r-cran-iterators_1.0.14-1_all.deb ... 126s Unpacking r-cran-iterators (1.0.14-1) ... 126s Selecting previously unselected package r-cran-foreach. 126s Preparing to unpack .../229-r-cran-foreach_1.5.2-1_all.deb ... 126s Unpacking r-cran-foreach (1.5.2-1) ... 127s Selecting previously unselected package r-cran-data.table. 127s Preparing to unpack .../230-r-cran-data.table_1.16.4+dfsg-1_amd64.deb ... 127s Unpacking r-cran-data.table (1.16.4+dfsg-1) ... 127s Selecting previously unselected package r-cran-modelmetrics. 127s Preparing to unpack .../231-r-cran-modelmetrics_1.2.2.2-1build1_amd64.deb ... 127s Unpacking r-cran-modelmetrics (1.2.2.2-1build1) ... 127s Selecting previously unselected package r-cran-proc. 127s Preparing to unpack .../232-r-cran-proc_1.18.5-1_amd64.deb ... 127s Unpacking r-cran-proc (1.18.5-1) ... 127s Selecting previously unselected package r-cran-tzdb. 127s Preparing to unpack .../233-r-cran-tzdb_0.4.0-2_amd64.deb ... 127s Unpacking r-cran-tzdb (0.4.0-2) ... 127s Selecting previously unselected package r-cran-clock. 127s Preparing to unpack .../234-r-cran-clock_0.7.1-1_amd64.deb ... 127s Unpacking r-cran-clock (0.7.1-1) ... 127s Selecting previously unselected package r-cran-gower. 127s Preparing to unpack .../235-r-cran-gower_1.0.1-1_amd64.deb ... 127s Unpacking r-cran-gower (1.0.1-1) ... 127s Selecting previously unselected package r-cran-hardhat. 127s Preparing to unpack .../236-r-cran-hardhat_1.4.0+dfsg-1_all.deb ... 127s Unpacking r-cran-hardhat (1.4.0+dfsg-1) ... 127s Selecting previously unselected package r-cran-rpart. 127s Preparing to unpack .../237-r-cran-rpart_4.1.24-1_amd64.deb ... 127s Unpacking r-cran-rpart (4.1.24-1) ... 127s Selecting previously unselected package r-cran-nnet. 127s Preparing to unpack .../238-r-cran-nnet_7.3-20-1_amd64.deb ... 127s Unpacking r-cran-nnet (7.3-20-1) ... 127s Selecting previously unselected package r-cran-shape. 127s Preparing to unpack .../239-r-cran-shape_1.4.6.1-1_all.deb ... 127s Unpacking r-cran-shape (1.4.6.1-1) ... 127s Selecting previously unselected package r-cran-diagram. 127s Preparing to unpack .../240-r-cran-diagram_1.6.5-2_all.deb ... 127s Unpacking r-cran-diagram (1.6.5-2) ... 127s Selecting previously unselected package r-cran-kernsmooth. 127s Preparing to unpack .../241-r-cran-kernsmooth_2.23-26-1_amd64.deb ... 127s Unpacking r-cran-kernsmooth (2.23-26-1) ... 127s Selecting previously unselected package r-cran-globals. 127s Preparing to unpack .../242-r-cran-globals_0.16.3-1_all.deb ... 127s Unpacking r-cran-globals (0.16.3-1) ... 127s Selecting previously unselected package r-cran-listenv. 127s Preparing to unpack .../243-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 127s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 127s Selecting previously unselected package r-cran-parallelly. 127s Preparing to unpack .../244-r-cran-parallelly_1.38.0-1_amd64.deb ... 127s Unpacking r-cran-parallelly (1.38.0-1) ... 127s Selecting previously unselected package r-cran-future. 127s Preparing to unpack .../245-r-cran-future_1.34.0+dfsg-1_all.deb ... 127s Unpacking r-cran-future (1.34.0+dfsg-1) ... 127s Selecting previously unselected package r-cran-future.apply. 127s Preparing to unpack .../246-r-cran-future.apply_1.11.2+dfsg-1_all.deb ... 127s Unpacking r-cran-future.apply (1.11.2+dfsg-1) ... 127s Selecting previously unselected package r-cran-numderiv. 127s Preparing to unpack .../247-r-cran-numderiv_2016.8-1.1-3_all.deb ... 127s Unpacking r-cran-numderiv (2016.8-1.1-3) ... 127s Selecting previously unselected package r-cran-progressr. 127s Preparing to unpack .../248-r-cran-progressr_0.14.0-1_all.deb ... 127s Unpacking r-cran-progressr (0.14.0-1) ... 127s Selecting previously unselected package r-cran-squarem. 127s Preparing to unpack .../249-r-cran-squarem_2021.1-1_all.deb ... 127s Unpacking r-cran-squarem (2021.1-1) ... 127s Selecting previously unselected package r-cran-lava. 127s Preparing to unpack .../250-r-cran-lava_1.7.3+dfsg-1_all.deb ... 127s Unpacking r-cran-lava (1.7.3+dfsg-1) ... 128s Selecting previously unselected package r-cran-prodlim. 128s Preparing to unpack .../251-r-cran-prodlim_2024.06.25-1_amd64.deb ... 128s Unpacking r-cran-prodlim (2024.06.25-1) ... 128s Selecting previously unselected package r-cran-ipred. 128s Preparing to unpack .../252-r-cran-ipred_0.9-15-1_amd64.deb ... 128s Unpacking r-cran-ipred (0.9-15-1) ... 128s Selecting previously unselected package r-cran-timechange. 128s Preparing to unpack .../253-r-cran-timechange_0.3.0-1_amd64.deb ... 128s Unpacking r-cran-timechange (0.3.0-1) ... 128s Selecting previously unselected package r-cran-lubridate. 128s Preparing to unpack .../254-r-cran-lubridate_1.9.3+dfsg-1_amd64.deb ... 128s Unpacking r-cran-lubridate (1.9.3+dfsg-1) ... 128s Selecting previously unselected package r-cran-purrr. 128s Preparing to unpack .../255-r-cran-purrr_1.0.2-1_amd64.deb ... 128s Unpacking r-cran-purrr (1.0.2-1) ... 128s Selecting previously unselected package r-cran-tidyr. 128s Preparing to unpack .../256-r-cran-tidyr_1.3.1-1_amd64.deb ... 128s Unpacking r-cran-tidyr (1.3.1-1) ... 128s Selecting previously unselected package r-cran-timedate. 128s Preparing to unpack .../257-r-cran-timedate_4041.110-1_amd64.deb ... 128s Unpacking r-cran-timedate (4041.110-1) ... 128s Selecting previously unselected package r-cran-recipes. 128s Preparing to unpack .../258-r-cran-recipes_1.1.0+dfsg-1_all.deb ... 128s Unpacking r-cran-recipes (1.1.0+dfsg-1) ... 128s Selecting previously unselected package r-cran-caret. 128s Preparing to unpack .../259-r-cran-caret_6.0-94+dfsg-1_amd64.deb ... 128s Unpacking r-cran-caret (6.0-94+dfsg-1) ... 128s Selecting previously unselected package r-cran-catools. 128s Preparing to unpack .../260-r-cran-catools_1.18.2-1_amd64.deb ... 128s Unpacking r-cran-catools (1.18.2-1) ... 128s Selecting previously unselected package r-cran-evaluate. 128s Preparing to unpack .../261-r-cran-evaluate_1.0.0-1_all.deb ... 128s Unpacking r-cran-evaluate (1.0.0-1) ... 128s Selecting previously unselected package r-cran-xfun. 128s Preparing to unpack .../262-r-cran-xfun_0.49+dfsg-1_amd64.deb ... 128s Unpacking r-cran-xfun (0.49+dfsg-1) ... 128s Selecting previously unselected package r-cran-highr. 128s Preparing to unpack .../263-r-cran-highr_0.11+dfsg-1_all.deb ... 128s Unpacking r-cran-highr (0.11+dfsg-1) ... 128s Selecting previously unselected package libjs-mathjax. 128s Preparing to unpack .../264-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 128s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 129s Selecting previously unselected package r-cran-knitr. 130s Preparing to unpack .../265-r-cran-knitr_1.49+dfsg-1_all.deb ... 130s Unpacking r-cran-knitr (1.49+dfsg-1) ... 130s Selecting previously unselected package r-cran-fontawesome. 130s Preparing to unpack .../266-r-cran-fontawesome_0.5.2-1_all.deb ... 130s Unpacking r-cran-fontawesome (0.5.2-1) ... 130s Selecting previously unselected package r-cran-tinytex. 130s Preparing to unpack .../267-r-cran-tinytex_0.53-1_all.deb ... 130s Unpacking r-cran-tinytex (0.53-1) ... 130s Selecting previously unselected package libjs-modernizr. 130s Preparing to unpack .../268-libjs-modernizr_3.13.0-0.1_all.deb ... 130s Unpacking libjs-modernizr (3.13.0-0.1) ... 130s Selecting previously unselected package r-cran-later. 130s Preparing to unpack .../269-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 130s Unpacking r-cran-later (1.3.2+dfsg-1) ... 130s Selecting previously unselected package r-cran-promises. 130s Preparing to unpack .../270-r-cran-promises_1.3.0+dfsg-1_amd64.deb ... 130s Unpacking r-cran-promises (1.3.0+dfsg-1) ... 130s Selecting previously unselected package r-cran-httpuv. 130s Preparing to unpack .../271-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 130s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 130s Selecting previously unselected package r-cran-xtable. 130s Preparing to unpack .../272-r-cran-xtable_1%3a1.8-4-2_all.deb ... 130s Unpacking r-cran-xtable (1:1.8-4-2) ... 130s Selecting previously unselected package r-cran-sourcetools. 130s Preparing to unpack .../273-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 130s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 130s Selecting previously unselected package r-cran-commonmark. 130s Preparing to unpack .../274-r-cran-commonmark_1.9.2-2_amd64.deb ... 130s Unpacking r-cran-commonmark (1.9.2-2) ... 130s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 130s Preparing to unpack .../275-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 130s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 130s Selecting previously unselected package r-cran-shiny. 130s Preparing to unpack .../276-r-cran-shiny_1.9.1+dfsg-1_all.deb ... 130s Unpacking r-cran-shiny (1.9.1+dfsg-1) ... 130s Selecting previously unselected package r-cran-rmarkdown. 130s Preparing to unpack .../277-r-cran-rmarkdown_2.28+dfsg-1_all.deb ... 130s Unpacking r-cran-rmarkdown (2.28+dfsg-1) ... 130s Selecting previously unselected package r-cran-htmlwidgets. 130s Preparing to unpack .../278-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 130s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 130s Selecting previously unselected package r-cran-miniui. 130s Preparing to unpack .../279-r-cran-miniui_0.1.1.1-3build1_all.deb ... 130s Unpacking r-cran-miniui (0.1.1.1-3build1) ... 130s Selecting previously unselected package r-cran-shinyjs. 130s Preparing to unpack .../280-r-cran-shinyjs_2.1.0-1_all.deb ... 130s Unpacking r-cran-shinyjs (2.1.0-1) ... 130s Selecting previously unselected package r-cran-colourpicker. 130s Preparing to unpack .../281-r-cran-colourpicker_1.3.0+dfsg-1_all.deb ... 130s Unpacking r-cran-colourpicker (1.3.0+dfsg-1) ... 130s Selecting previously unselected package r-cran-conquer. 130s Preparing to unpack .../282-r-cran-conquer_1.3.3-1_amd64.deb ... 130s Unpacking r-cran-conquer (1.3.3-1) ... 130s Selecting previously unselected package r-cran-cowplot. 130s Preparing to unpack .../283-r-cran-cowplot_1.1.3+dfsg-1_all.deb ... 130s Unpacking r-cran-cowplot (1.1.3+dfsg-1) ... 130s Selecting previously unselected package r-cran-lazyeval. 130s Preparing to unpack .../284-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 130s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 130s Selecting previously unselected package r-cran-crosstalk. 130s Preparing to unpack .../285-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 130s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 130s Selecting previously unselected package r-cran-deldir. 130s Preparing to unpack .../286-r-cran-deldir_2.0-4-1build1_amd64.deb ... 130s Unpacking r-cran-deldir (2.0-4-1build1) ... 130s Selecting previously unselected package r-cran-deoptimr. 130s Preparing to unpack .../287-r-cran-deoptimr_1.1-3-1-1_all.deb ... 130s Unpacking r-cran-deoptimr (1.1-3-1-1) ... 130s Selecting previously unselected package r-cran-desc. 130s Preparing to unpack .../288-r-cran-desc_1.4.3-1_all.deb ... 130s Unpacking r-cran-desc (1.4.3-1) ... 130s Selecting previously unselected package r-cran-diffobj. 130s Preparing to unpack .../289-r-cran-diffobj_0.3.5-1_amd64.deb ... 130s Unpacking r-cran-diffobj (0.3.5-1) ... 131s Selecting previously unselected package r-cran-dotcall64. 131s Preparing to unpack .../290-r-cran-dotcall64_1.1-1-1_amd64.deb ... 131s Unpacking r-cran-dotcall64 (1.1-1-1) ... 131s Selecting previously unselected package r-cran-sitmo. 131s Preparing to unpack .../291-r-cran-sitmo_2.0.2-1_amd64.deb ... 131s Unpacking r-cran-sitmo (2.0.2-1) ... 131s Selecting previously unselected package r-cran-dqrng. 131s Preparing to unpack .../292-r-cran-dqrng_0.3.2+dfsg-1_amd64.deb ... 131s Unpacking r-cran-dqrng (0.3.2+dfsg-1) ... 131s Selecting previously unselected package r-cran-fastdummies. 131s Preparing to unpack .../293-r-cran-fastdummies_1.7.4-1_all.deb ... 131s Unpacking r-cran-fastdummies (1.7.4-1) ... 131s Selecting previously unselected package r-cran-fitdistrplus. 131s Preparing to unpack .../294-r-cran-fitdistrplus_1.2-1-1_all.deb ... 131s Unpacking r-cran-fitdistrplus (1.2-1-1) ... 131s Selecting previously unselected package r-cran-fnn. 131s Preparing to unpack .../295-r-cran-fnn_1.1.4.1-1_amd64.deb ... 131s Unpacking r-cran-fnn (1.1.4.1-1) ... 131s Selecting previously unselected package r-cran-gtools. 131s Preparing to unpack .../296-r-cran-gtools_3.9.5-1_amd64.deb ... 131s Unpacking r-cran-gtools (3.9.5-1) ... 131s Selecting previously unselected package r-cran-gdata. 131s Preparing to unpack .../297-r-cran-gdata_3.0.1-1_all.deb ... 131s Unpacking r-cran-gdata (3.0.1-1) ... 131s Selecting previously unselected package r-cran-vipor. 131s Preparing to unpack .../298-r-cran-vipor_0.4.7-1_all.deb ... 131s Unpacking r-cran-vipor (0.4.7-1) ... 131s Selecting previously unselected package r-cran-ggbeeswarm. 131s Preparing to unpack .../299-r-cran-ggbeeswarm_0.7.2-1_all.deb ... 131s Unpacking r-cran-ggbeeswarm (0.7.2-1) ... 131s Selecting previously unselected package r-cran-png. 131s Preparing to unpack .../300-r-cran-png_0.1-8-1build2_amd64.deb ... 131s Unpacking r-cran-png (0.1-8-1build2) ... 131s Selecting previously unselected package r-cran-systemfonts. 131s Preparing to unpack .../301-r-cran-systemfonts_1.1.0-1_amd64.deb ... 131s Unpacking r-cran-systemfonts (1.1.0-1) ... 131s Selecting previously unselected package r-cran-textshaping. 131s Preparing to unpack .../302-r-cran-textshaping_0.3.7-2_amd64.deb ... 131s Unpacking r-cran-textshaping (0.3.7-2) ... 131s Selecting previously unselected package r-cran-ragg. 131s Preparing to unpack .../303-r-cran-ragg_1.3.3-1_amd64.deb ... 131s Unpacking r-cran-ragg (1.3.3-1) ... 131s Selecting previously unselected package r-cran-ggrastr. 131s Preparing to unpack .../304-r-cran-ggrastr_1.0.2-1_all.deb ... 131s Unpacking r-cran-ggrastr (1.0.2-1) ... 131s Selecting previously unselected package r-cran-ggrepel. 131s Preparing to unpack .../305-r-cran-ggrepel_0.9.5-2_amd64.deb ... 131s Unpacking r-cran-ggrepel (0.9.5-2) ... 131s Selecting previously unselected package r-cran-ggridges. 131s Preparing to unpack .../306-r-cran-ggridges_0.5.6-1_all.deb ... 131s Unpacking r-cran-ggridges (0.5.6-1) ... 131s Selecting previously unselected package r-cran-goftest. 131s Preparing to unpack .../307-r-cran-goftest_1.2-3-1_amd64.deb ... 131s Unpacking r-cran-goftest (1.2-3-1) ... 131s Selecting previously unselected package r-cran-gplots. 131s Preparing to unpack .../308-r-cran-gplots_3.2.0-1_all.deb ... 131s Unpacking r-cran-gplots (3.2.0-1) ... 131s Selecting previously unselected package r-cran-hdf5r. 131s Preparing to unpack .../309-r-cran-hdf5r_1.3.11+dfsg-1_amd64.deb ... 131s Unpacking r-cran-hdf5r (1.3.11+dfsg-1) ... 131s Selecting previously unselected package r-cran-rprojroot. 131s Preparing to unpack .../310-r-cran-rprojroot_2.0.4-1_all.deb ... 131s Unpacking r-cran-rprojroot (2.0.4-1) ... 131s Selecting previously unselected package r-cran-here. 132s Preparing to unpack .../311-r-cran-here_1.0.1-2_all.deb ... 132s Unpacking r-cran-here (1.0.1-2) ... 132s Selecting previously unselected package r-cran-ica. 132s Preparing to unpack .../312-r-cran-ica_1.0-3-1_all.deb ... 132s Unpacking r-cran-ica (1.0-3-1) ... 132s Selecting previously unselected package r-cran-kernlab. 132s Preparing to unpack .../313-r-cran-kernlab_0.9-33-1_amd64.deb ... 132s Unpacking r-cran-kernlab (0.9-33-1) ... 132s Selecting previously unselected package r-cran-rcpptoml. 132s Preparing to unpack .../314-r-cran-rcpptoml_0.2.2+dfsg-1_amd64.deb ... 132s Unpacking r-cran-rcpptoml (0.2.2+dfsg-1) ... 132s Selecting previously unselected package r-cran-reticulate. 132s Preparing to unpack .../315-r-cran-reticulate_1.39.0+dfsg-1_amd64.deb ... 132s Unpacking r-cran-reticulate (1.39.0+dfsg-1) ... 132s Selecting previously unselected package r-cran-leiden. 132s Preparing to unpack .../316-r-cran-leiden_0.4.3.1+dfsg-1_all.deb ... 132s Unpacking r-cran-leiden (0.4.3.1+dfsg-1) ... 132s Selecting previously unselected package r-cran-zoo. 132s Preparing to unpack .../317-r-cran-zoo_1.8-12-2_amd64.deb ... 132s Unpacking r-cran-zoo (1.8-12-2) ... 132s Selecting previously unselected package r-cran-lmtest. 132s Preparing to unpack .../318-r-cran-lmtest_0.9.40-1_amd64.deb ... 132s Unpacking r-cran-lmtest (0.9.40-1) ... 132s Selecting previously unselected package r-cran-mathjaxr. 132s Preparing to unpack .../319-r-cran-mathjaxr_1.6-0-1_all.deb ... 132s Unpacking r-cran-mathjaxr (1.6-0-1) ... 132s Selecting previously unselected package r-cran-matrixmodels. 132s Preparing to unpack .../320-r-cran-matrixmodels_0.5-3-1_all.deb ... 132s Unpacking r-cran-matrixmodels (0.5-3-1) ... 132s Selecting previously unselected package r-cran-rbibutils. 132s Preparing to unpack .../321-r-cran-rbibutils_2.3-1_amd64.deb ... 132s Unpacking r-cran-rbibutils (2.3-1) ... 132s Selecting previously unselected package r-cran-rdpack. 132s Preparing to unpack .../322-r-cran-rdpack_2.6.2-1_all.deb ... 132s Unpacking r-cran-rdpack (2.6.2-1) ... 132s Selecting previously unselected package r-cran-mnormt. 132s Preparing to unpack .../323-r-cran-mnormt_2.1.1-2_amd64.deb ... 132s Unpacking r-cran-mnormt (2.1.1-2) ... 132s Selecting previously unselected package r-cran-sparsem. 132s Preparing to unpack .../324-r-cran-sparsem_1.84-2-1_amd64.deb ... 132s Unpacking r-cran-sparsem (1.84-2-1) ... 132s Selecting previously unselected package r-cran-quantreg. 132s Preparing to unpack .../325-r-cran-quantreg_5.99.1-1_amd64.deb ... 132s Unpacking r-cran-quantreg (5.99.1-1) ... 132s Selecting previously unselected package r-cran-sn. 132s Preparing to unpack .../326-r-cran-sn_2.1.1-2_all.deb ... 132s Unpacking r-cran-sn (2.1.1-2) ... 132s Selecting previously unselected package r-cran-mvtnorm. 132s Preparing to unpack .../327-r-cran-mvtnorm_1.3-3-1_amd64.deb ... 132s Unpacking r-cran-mvtnorm (1.3-3-1) ... 132s Selecting previously unselected package r-cran-tfisher. 132s Preparing to unpack .../328-r-cran-tfisher_0.2.0-3_all.deb ... 132s Unpacking r-cran-tfisher (0.2.0-3) ... 132s Selecting previously unselected package r-cran-plotrix. 132s Preparing to unpack .../329-r-cran-plotrix_3.8-4-1_all.deb ... 132s Unpacking r-cran-plotrix (3.8-4-1) ... 132s Selecting previously unselected package r-cran-th.data. 132s Preparing to unpack .../330-r-cran-th.data_1.1-2-2_all.deb ... 132s Unpacking r-cran-th.data (1.1-2-2) ... 133s Selecting previously unselected package r-cran-sandwich. 133s Preparing to unpack .../331-r-cran-sandwich_3.1-1-1_all.deb ... 133s Unpacking r-cran-sandwich (3.1-1-1) ... 133s Selecting previously unselected package r-cran-multcomp. 133s Preparing to unpack .../332-r-cran-multcomp_1.4-26-2_all.deb ... 133s Unpacking r-cran-multcomp (1.4-26-2) ... 133s Selecting previously unselected package r-cran-mutoss. 133s Preparing to unpack .../333-r-cran-mutoss_0.1-13-1_all.deb ... 133s Unpacking r-cran-mutoss (0.1-13-1) ... 133s Selecting previously unselected package r-cran-robustbase. 133s Preparing to unpack .../334-r-cran-robustbase_0.99-4-1-1_amd64.deb ... 133s Unpacking r-cran-robustbase 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unselected package r-cran-r.methodss3. 134s Preparing to unpack .../346-r-cran-r.methodss3_1.8.2-1_all.deb ... 134s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 134s Selecting previously unselected package r-cran-r.oo. 134s Preparing to unpack .../347-r-cran-r.oo_1.26.0-1_all.deb ... 134s Unpacking r-cran-r.oo (1.26.0-1) ... 134s Selecting previously unselected package r-cran-r.utils. 134s Preparing to unpack .../348-r-cran-r.utils_2.12.3-1_all.deb ... 134s Unpacking r-cran-r.utils (2.12.3-1) ... 134s Selecting previously unselected package r-cran-rcppannoy. 134s Preparing to unpack .../349-r-cran-rcppannoy_0.0.22-1_amd64.deb ... 134s Unpacking r-cran-rcppannoy (0.0.22-1) ... 134s Selecting previously unselected package r-cran-rcpphnsw. 134s Preparing to unpack .../350-r-cran-rcpphnsw_0.5.0+ds-1_amd64.deb ... 134s Unpacking r-cran-rcpphnsw (0.5.0+ds-1) ... 134s Selecting previously unselected package r-cran-rcppprogress. 134s Preparing to unpack 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r-bioc-genomicalignments (1.42.0-2) ... 138s Setting up r-cran-metap (1.11-1) ... 138s Setting up r-bioc-rtracklayer (1.66.0-2) ... 138s Setting up r-bioc-singlecellexperiment (1.28.1+ds-2) ... 138s Setting up r-cran-plotly (4.10.4+dfsg-2) ... 138s Setting up r-cran-mixtools (2.0.0-1) ... 138s Setting up r-cran-seurat (5.1.0-1) ... 138s Processing triggers for man-db (2.13.0-1) ... 140s Processing triggers for install-info (7.1.1-1) ... 140s Processing triggers for libc-bin (2.40-4ubuntu1) ... 141s autopkgtest [16:08:40]: test run-unit-test: [----------------------- 141s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 141s BEGIN TEST testthat.R 141s 141s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 141s Copyright (C) 2024 The R Foundation for Statistical Computing 141s Platform: x86_64-pc-linux-gnu 141s 141s R is free software and comes with ABSOLUTELY NO WARRANTY. 141s You are welcome to redistribute it under certain conditions. 141s Type 'license()' or 'licence()' for distribution details. 141s 141s R is a collaborative project with many contributors. 141s Type 'contributors()' for more information and 141s 'citation()' on how to cite R or R packages in publications. 141s 141s Type 'demo()' for some demos, 'help()' for on-line help, or 141s 'help.start()' for an HTML browser interface to help. 141s Type 'q()' to quit R. 141s 141s > library(testthat) 142s > library(Seurat) 142s Loading required package: SeuratObject 142s Loading required package: sp 143s ‘SeuratObject’ was built under R 4.4.1 but the current version is 143s 4.4.2; it is recomended that you reinstall ‘SeuratObject’ as the ABI 143s for R may have changed 143s ‘SeuratObject’ was built with package ‘Matrix’ 1.7.0 but the current 143s version is 1.7.1; it is recomended that you reinstall ‘SeuratObject’ as 143s the ABI for ‘Matrix’ may have changed 143s 143s Attaching package: ‘SeuratObject’ 143s 143s The following objects are masked from ‘package:base’: 143s 143s intersect, t 143s 145s > # 145s > # # Run tests for 'v3' 145s > # message('Run tests for v3 assay') 145s > # options(Seurat.object.assay.version = 'v3') 145s > # test_check("Seurat") 145s > 145s > # Run tests for 'v5' 145s > message('Run tests for v5 assay') 145s > options(Seurat.object.assay.version = 'v5') 145s > test_check("Seurat") 145s Run tests for v5 assay 146s | | | 0% | |======================================================================| 100% 201s Performing log-normalization 201s 0% 10 20 30 40 50 60 70 80 90 100% 201s [----|----|----|----|----|----|----|----|----|----| 201s **************************************************| 201s Performing log-normalization 201s 0% 10 20 30 40 50 60 70 80 90 100% 201s [----|----|----|----|----|----|----|----|----|----| 201s **************************************************| 201s Performing log-normalization 201s 0% 10 20 30 40 50 60 70 80 90 100% 201s [----|----|----|----|----|----|----|----|----|----| 201s **************************************************| 209s | | | 0% | |======================================================================| 100% 211s | | | 0% | |======================================================================| 100% 211s | | | 0% | |======================================================================| 100% 236s Performing log-normalization 236s 0% 10 20 30 40 50 60 70 80 90 100% 236s [----|----|----|----|----|----|----|----|----|----| 236s **************************************************| 236s Calculating gene variances 236s 0% 10 20 30 40 50 60 70 80 90 100% 236s [----|----|----|----|----|----|----|----|----|----| 236s **************************************************| 236s Calculating feature variances of standardized and clipped values 236s 0% 10 20 30 40 50 60 70 80 90 100% 236s [----|----|----|----|----|----|----|----|----|----| 236s **************************************************| 236s | | | 0% | |======================================================================| 100% 236s Modularity Optimizer version 1.3.0 by Ludo Waltman and Nees Jan van Eck 236s 236s Number of nodes: 80 236s Number of edges: 2045 236s 236s Running Louvain algorithm... 236s 0% 10 20 30 40 50 60 70 80 90 100% 236s [----|----|----|----|----|----|----|----|----|----| 236s ***********************************Maximum modularity in 10 random starts: -0.0613 236s Number of communities: 64 236s Elapsed time: 0 seconds 236s ***************| 236s Performing log-normalization 236s 0% 10 20 30 40 50 60 70 80 90 100% 236s [----|----|----|----|----|----|----|----|----|----| 236s **************************************************| 237s | | | 0% | |======================================================================| 100% 237s | | | 0% | |======================================================================| 100% 238s | | | 0% | |======================================================================| 100% 239s | | | 0% | |======================================================================| 100% 240s | | | 0% | |======================================================================| 100% 240s [ FAIL 0 | WARN 210 | SKIP 32 | PASS 661 ] 240s 240s ══ Skipped tests (32) ══════════════════════════════════════════════════════════ 241s • arrow cannot be loaded (1): 'test_load_10X.R:179:3' 241s • On CRAN (29): 'test_differential_expression.R:307:3', 241s 'test_differential_expression.R:349:3', 241s 'test_differential_expression.R:446:3', 'test_dimensional_reduction.R:55:3', 241s 'test_integratedata.R:111:3', 'test_integration.R:74:3', 241s 'test_integration.R:105:3', 'test_integration.R:136:3', 241s 'test_integration.R:170:3', 'test_integration.R:202:3', 241s 'test_integration.R:234:3', 'test_integration.R:264:3', 241s 'test_integration.R:306:3', 'test_integration.R:335:3', 241s 'test_integration.R:365:3', 'test_integration5.R:38:3', 241s 'test_integration5.R:219:3', 'test_objects.R:6:3', 241s 'test_preprocessing.R:140:3', 'test_preprocessing.R:158:3', 241s 'test_preprocessing.R:433:3', 'test_preprocessing.R:554:3', 241s 'test_read_mtx.R:4:3', 'test_read_mtx.R:18:3', 'test_transferdata.R:65:3', 241s 'test_transferdata.R:88:3', 'test_transferdata.R:100:3', 241s 'test_transferdata.R:112:3', 'test_transferdata.R:128:3' 241s • sf cannot be loaded (2): 'test_spatial.R:115:3', 'test_spatial.R:266:3' 241s 241s [ FAIL 0 | WARN 210 | SKIP 32 | PASS 661 ] 241s > 241s > 241s > 241s autopkgtest [16:10:20]: test run-unit-test: -----------------------] 242s autopkgtest [16:10:21]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 242s run-unit-test PASS 242s autopkgtest [16:10:21]: test pkg-r-autopkgtest: preparing testbed 305s autopkgtest [16:11:24]: testbed dpkg architecture: amd64 305s autopkgtest [16:11:24]: testbed apt version: 2.9.18 305s autopkgtest [16:11:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup 306s autopkgtest [16:11:25]: testbed release detected to be: plucky 306s autopkgtest [16:11:25]: updating testbed package index (apt update) 307s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 307s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 307s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 307s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 307s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [178 kB] 307s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [868 kB] 307s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 307s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.1 kB] 307s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [228 kB] 307s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [331 kB] 307s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [40.1 kB] 307s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2408 B] 307s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [468 kB] 307s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [1095 kB] 308s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [4444 B] 308s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [24.9 kB] 308s Fetched 3337 kB in 1s (3314 kB/s) 309s Reading package lists... 310s Reading package lists... 310s Building dependency tree... 310s Reading state information... 310s Calculating upgrade... 310s The following packages will be upgraded: 310s libgudev-1.0-0 usb.ids 310s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 310s Need to get 239 kB of archives. 310s After this operation, 0 B of additional disk space will be used. 310s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 usb.ids all 2025.01.14-1 [223 kB] 311s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libgudev-1.0-0 amd64 1:238-6 [15.8 kB] 311s Fetched 239 kB in 0s (484 kB/s) 311s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 311s Preparing to unpack .../usb.ids_2025.01.14-1_all.deb ... 311s Unpacking usb.ids (2025.01.14-1) over (2024.12.04-1) ... 311s Preparing to unpack .../libgudev-1.0-0_1%3a238-6_amd64.deb ... 311s Unpacking libgudev-1.0-0:amd64 (1:238-6) over (1:238-5ubuntu1) ... 311s Setting up usb.ids (2025.01.14-1) ... 311s Setting up libgudev-1.0-0:amd64 (1:238-6) ... 311s Processing triggers for libc-bin (2.40-4ubuntu1) ... 312s Reading package lists... 312s Building dependency tree... 312s Reading state information... 312s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 312s autopkgtest [16:11:31]: upgrading testbed (apt dist-upgrade and autopurge) 313s Reading package lists... 313s Building dependency tree... 313s Reading state information... 313s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 313s Starting 2 pkgProblemResolver with broken count: 0 313s Done 314s Entering ResolveByKeep 314s 314s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 314s Reading package lists... 315s Building dependency tree... 315s Reading state information... 315s Starting pkgProblemResolver with broken count: 0 315s Starting 2 pkgProblemResolver with broken count: 0 315s Done 315s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 319s Reading package lists... 319s Building dependency tree... 319s Reading state information... 320s Starting pkgProblemResolver with broken count: 10 320s Starting 2 pkgProblemResolver with broken count: 10 320s Investigating (0) r-bioc-iranges:amd64 < none -> 2.38.1-1 @un puN Ib > 320s Broken r-bioc-iranges:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 320s Considering r-bioc-biocgenerics:amd64 62 as a solution to r-bioc-iranges:amd64 28 320s Re-Instated r-bioc-biocgenerics:amd64 320s Investigating (0) r-bioc-genomeinfodb:amd64 < none -> 1.40.1+dfsg-1 @un puN Ib > 320s Broken r-bioc-genomeinfodb:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 320s Considering r-bioc-biocgenerics:amd64 28 as a solution to r-bioc-genomeinfodb:amd64 11 320s Broken r-bioc-genomeinfodb:amd64 Depends on r-bioc-ucsc.utils:amd64 < none | 1.0.0+ds-2 @un uH > (> 1.0.0+ds-1) 320s Considering r-bioc-ucsc.utils:amd64 0 as a solution to r-bioc-genomeinfodb:amd64 11 320s Reinst Failed because of protected r-bioc-biocgenerics:amd64 320s Considering r-bioc-ucsc.utils:amd64 0 as a solution to r-bioc-genomeinfodb:amd64 11 320s Broken r-bioc-genomeinfodb:amd64 Depends on r-bioc-genomeinfodbdata:amd64 < none | 1.2.13-2 @un uH > (>= 1.2.12) 320s Considering r-bioc-genomeinfodbdata:amd64 0 as a solution to r-bioc-genomeinfodb:amd64 11 320s Re-Instated r-bioc-genomeinfodbdata:amd64 320s Investigating (0) r-bioc-genomicranges:amd64 < none -> 1.56.2+dfsg-1 @un puN Ib > 320s Broken r-bioc-genomicranges:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 320s Considering r-bioc-biocgenerics:amd64 28 as a solution to r-bioc-genomicranges:amd64 8 320s Investigating (0) r-bioc-matrixgenerics:amd64 < none -> 1.16.0-2 @un puN Ib > 320s Broken r-bioc-matrixgenerics:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 320s Considering r-bioc-biocgenerics:amd64 28 as a solution to r-bioc-matrixgenerics:amd64 8 320s Investigating (0) r-bioc-xvector:amd64 < none -> 0.44.0-1 @un puN Ib > 320s Broken r-bioc-xvector:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 320s Considering r-bioc-biocgenerics:amd64 28 as a solution to r-bioc-xvector:amd64 7 320s Broken r-bioc-xvector:amd64 Depends on r-bioc-zlibbioc:amd64 < none | 1.50.0+dfsg-2 @un uH > (>= 1.50.0) 320s Considering r-bioc-zlibbioc:amd64 0 as a solution to r-bioc-xvector:amd64 7 320s Reinst Failed because of protected r-bioc-biocgenerics:amd64 320s Considering r-bioc-zlibbioc:amd64 0 as a solution to r-bioc-xvector:amd64 7 320s Investigating (0) r-bioc-biobase:amd64 < none -> 2.64.0-4 @un puN Ib > 320s Broken r-bioc-biobase:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 320s Considering r-bioc-biocgenerics:amd64 28 as a solution to r-bioc-biobase:amd64 7 320s Investigating (0) r-bioc-rtracklayer:amd64 < none -> 1.64.0-1 @un puN Ib > 320s Broken r-bioc-rtracklayer:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 320s Considering r-bioc-biocgenerics:amd64 28 as a solution to r-bioc-rtracklayer:amd64 1 320s Broken r-bioc-rtracklayer:amd64 Depends on r-cran-xml:amd64 < none | 3.99-0.18-1 @un uH > (>= 1.98-0) 320s Considering r-cran-xml:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 320s Re-Instated r-cran-xml:amd64 320s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-biostrings:amd64 < none | 2.72.1+dfsg-1 @un uH > (>= 2.72.1) 320s Considering r-bioc-biostrings:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 320s Reinst Failed because of protected r-bioc-biocgenerics:amd64 320s Considering r-bioc-biostrings:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 320s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-zlibbioc:amd64 < none | 1.50.0+dfsg-2 @un uH > (>= 1.50.0) 320s Considering r-bioc-zlibbioc:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 320s Considering r-bioc-zlibbioc:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 320s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-rsamtools:amd64 < none | 2.20.0+dfsg-1 @un uH > (>= 2.20.0) 320s Considering r-bioc-rsamtools:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 320s Reinst Failed because of protected r-bioc-biocgenerics:amd64 320s Considering r-bioc-rsamtools:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 320s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-genomicalignments:amd64 < none | 1.40.0-1 @un uH > (>= 1.40.0) 320s Considering r-bioc-genomicalignments:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 320s Reinst Failed because of protected r-bioc-biocgenerics:amd64 320s Considering r-bioc-genomicalignments:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 320s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-biocio:amd64 < none | 1.14.0+dfsg-1 @un uH > (>= 1.14.0) 320s Considering r-bioc-biocio:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 320s Reinst Failed because of protected r-bioc-biocgenerics:amd64 320s Considering r-bioc-biocio:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 320s Broken r-bioc-rtracklayer:amd64 Depends on r-cran-restfulr:amd64 < none | 0.0.15-1 @un uH > (>= 0.0.13) 320s Considering r-cran-restfulr:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 320s Re-Instated r-cran-rcurl:amd64 320s Re-Instated r-cran-rjson:amd64 320s Re-Instated r-cran-restfulr:amd64 320s Investigating (0) r-bioc-limma:amd64 < none -> 3.60.6+dfsg-1 @un puN Ib > 320s Broken r-bioc-limma:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 320s Considering r-bioc-biocgenerics:amd64 28 as a solution to r-bioc-limma:amd64 1 320s Broken r-bioc-limma:amd64 Depends on r-cran-statmod:amd64 < none | 1.5.0-1 @un uH > 320s Considering r-cran-statmod:amd64 1 as a solution to r-bioc-limma:amd64 1 320s Re-Instated r-cran-statmod:amd64 320s Investigating (0) r-bioc-deseq2:amd64 < none -> 1.44.0+dfsg-1 @un puN Ib > 320s Broken r-bioc-deseq2:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 320s Considering r-bioc-biocgenerics:amd64 28 as a solution to r-bioc-deseq2:amd64 1 320s Broken r-bioc-deseq2:amd64 Depends on r-bioc-biocparallel:amd64 < none | 1.38.0-2 @un uH > (>= 1.38.0) 320s Considering r-bioc-biocparallel:amd64 0 as a solution to r-bioc-deseq2:amd64 1 320s Reinst Failed because of protected r-bioc-biocgenerics:amd64 320s Considering r-bioc-biocparallel:amd64 0 as a solution to r-bioc-deseq2:amd64 1 320s Broken r-bioc-deseq2:amd64 Depends on r-cran-locfit:amd64 < none | 1.5-9.10-1 @un uH > 320s Considering r-cran-locfit:amd64 2 as a solution to r-bioc-deseq2:amd64 1 320s Re-Instated r-cran-locfit:amd64 320s Investigating (0) r-bioc-multtest:amd64 < none -> 2.60.0-1 @un puN Ib > 320s Broken r-bioc-multtest:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 320s Considering r-bioc-biocgenerics:amd64 28 as a solution to r-bioc-multtest:amd64 0 320s Done 320s Some packages could not be installed. This may mean that you have 320s requested an impossible situation or if you are using the unstable 320s distribution that some required packages have not yet been created 320s or been moved out of Incoming. 320s The following information may help to resolve the situation: 320s 320s The following packages have unmet dependencies: 320s r-bioc-biobase : Depends: r-api-bioc-3.19 320s r-bioc-deseq2 : Depends: r-api-bioc-3.19 320s Depends: r-bioc-biocparallel (>= 1.38.0) but it is not going to be installed 320s r-bioc-genomeinfodb : Depends: r-api-bioc-3.19 320s Depends: r-bioc-ucsc.utils (> 1.0.0+ds-1) but it is not going to be installed 320s r-bioc-genomicranges : Depends: r-api-bioc-3.19 320s r-bioc-iranges : Depends: r-api-bioc-3.19 320s r-bioc-limma : Depends: r-api-bioc-3.19 320s r-bioc-matrixgenerics : Depends: r-api-bioc-3.19 320s r-bioc-multtest : Depends: r-api-bioc-3.19 320s r-bioc-rtracklayer : Depends: r-api-bioc-3.19 320s Depends: r-bioc-biostrings (>= 2.72.1) but it is not going to be installed 320s Depends: r-bioc-zlibbioc (>= 1.50.0) but it is not going to be installed 320s Depends: r-bioc-rsamtools (>= 2.20.0) but it is not going to be installed 320s Depends: r-bioc-genomicalignments (>= 1.40.0) but it is not going to be installed 320s Depends: r-bioc-biocio (>= 1.14.0) but it is not going to be installed 320s r-bioc-xvector : Depends: r-api-bioc-3.19 320s Depends: r-bioc-zlibbioc (>= 1.50.0) but it is not going to be installed 320s E: Unable to correct problems, you have held broken packages. 320s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed 321s Reading package lists... 321s Building dependency tree... 321s Reading state information... 321s Starting pkgProblemResolver with broken count: 0 321s Starting 2 pkgProblemResolver with broken count: 0 321s Done 322s The following NEW packages will be installed: 322s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 322s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 322s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-14 322s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 322s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 322s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 322s javascript-common libamd3 libasan8 libblas-dev libblas3 libboost-dev 322s libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libcolamd3 libdatrie1 322s libdeflate-dev libdeflate0 libfftw3-double3 libfontconfig1 libgcc-14-dev 322s libgfortran-14-dev libgfortran5 libglpk40 libgomp1 libgraphite2-3 322s libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 322s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 322s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 322s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 322s libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js 322s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 322s libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 liblerc4 322s liblsan0 libltdl7 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev 322s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 322s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 322s libpixman-1-0 libpkgconf3 libpng-dev libquadmath0 libreadline-dev 322s libsharpyuv0 libsm6 libstdc++-14-dev libsuitesparseconfig7 libtcl8.6 322s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 322s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 322s littler node-bootstrap-sass node-html5shiv node-normalize.css pandoc 322s pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 322s r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 322s r-bioc-biostrings r-bioc-delayedarray r-bioc-deseq2 r-bioc-genomeinfodb 322s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges 322s r-bioc-iranges r-bioc-limma r-bioc-matrixgenerics r-bioc-multtest 322s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 322s r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment 322s r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-ape 322s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-bitops r-cran-brio 322s r-cran-bslib r-cran-cachem r-cran-callr r-cran-caret r-cran-catools 322s r-cran-class r-cran-cli r-cran-clock r-cran-cluster r-cran-codetools 322s r-cran-colorspace r-cran-colourpicker r-cran-commonmark r-cran-conquer 322s r-cran-cowplot r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl 322s r-cran-data.table r-cran-deldir r-cran-deoptimr r-cran-desc r-cran-diagram 322s r-cran-diffobj r-cran-digest r-cran-dotcall64 r-cran-dplyr r-cran-dqrng 322s r-cran-e1071 r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastdummies 322s r-cran-fastmap r-cran-fitdistrplus r-cran-fnn r-cran-fontawesome 322s r-cran-foreach r-cran-formatr r-cran-fs r-cran-futile.logger 322s r-cran-futile.options r-cran-future r-cran-future.apply r-cran-gdata 322s r-cran-generics r-cran-ggplot2 r-cran-ggrepel r-cran-ggridges r-cran-globals 322s r-cran-glue r-cran-goftest r-cran-gower r-cran-gplots r-cran-gridextra 322s r-cran-gtable r-cran-gtools r-cran-hardhat r-cran-here r-cran-highr 322s r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-ica 322s r-cran-igraph r-cran-ipred r-cran-irlba r-cran-isoband r-cran-iterators 322s r-cran-jquerylib r-cran-jsonlite r-cran-kernlab r-cran-kernsmooth 322s r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice 322s r-cran-lava r-cran-lazyeval r-cran-leiden r-cran-lifecycle r-cran-listenv 322s r-cran-littler r-cran-lmtest r-cran-locfit r-cran-lubridate r-cran-magrittr 322s r-cran-mass r-cran-mathjaxr r-cran-matrix r-cran-matrixmodels 322s r-cran-matrixstats r-cran-memoise r-cran-metap r-cran-mgcv r-cran-mime 322s r-cran-miniui r-cran-mixtools r-cran-mnormt r-cran-modelmetrics 322s r-cran-multcomp r-cran-munsell r-cran-mutoss r-cran-mvtnorm r-cran-nlme 322s r-cran-nnet r-cran-numderiv r-cran-openssl r-cran-parallelly 322s r-cran-patchwork r-cran-pbapply r-cran-pillar r-cran-pkgbuild 322s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plotly 322s r-cran-plotrix r-cran-plyr r-cran-png r-cran-polyclip r-cran-praise 322s r-cran-proc r-cran-processx r-cran-prodlim r-cran-progressr r-cran-promises 322s r-cran-proxy r-cran-ps r-cran-purrr r-cran-qqconf r-cran-quantreg 322s r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rann 322s r-cran-rappdirs r-cran-rbibutils r-cran-rcolorbrewer r-cran-rcpp 322s r-cran-rcppannoy r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcpphnsw 322s r-cran-rcppprogress r-cran-rcpptoml r-cran-rcurl r-cran-rdpack 322s r-cran-recipes r-cran-reshape2 r-cran-restfulr r-cran-reticulate 322s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-robustbase r-cran-rocr 322s r-cran-rpart r-cran-rprojroot r-cran-rspectra r-cran-rsvd r-cran-rtsne 322s r-cran-sandwich r-cran-sass r-cran-scales r-cran-scattermore 322s r-cran-sctransform r-cran-segmented r-cran-seurat r-cran-seuratobject 322s r-cran-shape r-cran-shiny r-cran-shinyjs r-cran-sitmo r-cran-sn r-cran-snow 322s r-cran-sourcetools r-cran-sp r-cran-spam r-cran-sparsem r-cran-spatstat.data 322s r-cran-spatstat.explore r-cran-spatstat.geom r-cran-spatstat.random 322s r-cran-spatstat.sparse r-cran-spatstat.utils r-cran-squarem r-cran-statmod 322s r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tensor 322s r-cran-testthat r-cran-tfisher r-cran-th.data r-cran-tibble r-cran-tidyr 322s r-cran-tidyselect r-cran-timechange r-cran-timedate r-cran-tinytex 322s r-cran-tzdb r-cran-utf8 r-cran-uwot r-cran-vctrs r-cran-vgam 322s r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml 322s r-cran-xtable r-cran-yaml r-cran-zoo unzip x11-common xdg-utils zip 322s zlib1g-dev 322s The following packages will be upgraded: 322s gcc-14-base libatomic1 libgcc-s1 libpng16-16t64 libstdc++6 322s 5 upgraded, 386 newly installed, 0 to remove and 125 not upgraded. 322s Need to get 458 MB of archives. 322s After this operation, 1318 MB of additional disk space will be used. 322s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 gcc-14-base amd64 14.2.0-13ubuntu1 [53.0 kB] 323s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libstdc++6 amd64 14.2.0-13ubuntu1 [787 kB] 323s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libatomic1 amd64 14.2.0-13ubuntu1 [10.3 kB] 323s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgcc-s1 amd64 14.2.0-13ubuntu1 [78.2 kB] 323s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpng16-16t64 amd64 1.6.45-1 [219 kB] 323s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 323s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 323s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-13ubuntu1 [11.9 MB] 324s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 cpp-14 amd64 14.2.0-13ubuntu1 [1032 B] 324s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 324s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 324s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libcc1-0 amd64 14.2.0-13ubuntu1 [47.6 kB] 324s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgomp1 amd64 14.2.0-13ubuntu1 [148 kB] 324s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libitm1 amd64 14.2.0-13ubuntu1 [29.1 kB] 324s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libasan8 amd64 14.2.0-13ubuntu1 [2998 kB] 324s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 liblsan0 amd64 14.2.0-13ubuntu1 [1317 kB] 324s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libtsan2 amd64 14.2.0-13ubuntu1 [2732 kB] 324s Get:18 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libubsan1 amd64 14.2.0-13ubuntu1 [1177 kB] 324s Get:19 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libhwasan0 amd64 14.2.0-13ubuntu1 [1634 kB] 324s Get:20 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libquadmath0 amd64 14.2.0-13ubuntu1 [153 kB] 324s Get:21 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgcc-14-dev amd64 14.2.0-13ubuntu1 [2815 kB] 324s Get:22 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-13ubuntu1 [23.4 MB] 325s Get:23 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 gcc-14 amd64 14.2.0-13ubuntu1 [534 kB] 325s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 325s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 325s Get:26 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libstdc++-14-dev amd64 14.2.0-13ubuntu1 [2508 kB] 325s Get:27 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-13ubuntu1 [13.3 MB] 325s Get:28 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 g++-14 amd64 14.2.0-13ubuntu1 [21.1 kB] 325s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 325s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 325s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 325s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 325s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 325s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 325s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 325s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 325s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 325s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 325s Get:39 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 325s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 325s Get:41 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgfortran5 amd64 14.2.0-13ubuntu1 [909 kB] 325s Get:42 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgfortran-14-dev amd64 14.2.0-13ubuntu1 [965 kB] 325s Get:43 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-13ubuntu1 [12.5 MB] 326s Get:44 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 gfortran-14 amd64 14.2.0-13ubuntu1 [13.2 kB] 326s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1022 B] 326s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.1.0-2ubuntu1 [1172 B] 326s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 326s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 11+nmu1 [5936 B] 326s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libsuitesparseconfig7 amd64 1:7.8.3+dfsg-2 [13.4 kB] 326s Get:50 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamd3 amd64 1:7.8.3+dfsg-2 [31.1 kB] 326s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-4 [332 kB] 326s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.0-4 [307 kB] 326s Get:53 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost1.83-dev amd64 1.83.0-4ubuntu2 [10.7 MB] 326s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 326s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 326s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 326s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 326s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 326s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 326s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 326s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libcolamd3 amd64 1:7.8.3+dfsg-2 [19.5 kB] 326s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 326s Get:63 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 326s Get:64 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 326s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libfftw3-double3 amd64 3.3.10-2fakesync1build1 [839 kB] 326s Get:66 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libltdl7 amd64 2.5.4-2 [46.0 kB] 326s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 libglpk40 amd64 5.0-1build2 [369 kB] 326s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 326s Get:69 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 326s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 326s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 326s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 327s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 327s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 327s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 327s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 327s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 327s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 327s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 327s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 327s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 327s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 327s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 327s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 327s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 327s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 327s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 327s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 327s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 327s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 327s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 327s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-4 [3177 kB] 327s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.0-4 [6486 kB] 328s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 328s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 328s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5-2 [384 kB] 328s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 328s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 328s Get:99 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpango-1.0-0 amd64 1.56.0-3 [255 kB] 328s Get:100 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpangoft2-1.0-0 amd64 1.56.0-3 [52.5 kB] 328s Get:101 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpangocairo-1.0-0 amd64 1.56.0-3 [29.1 kB] 328s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 328s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 328s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu3 [214 kB] 328s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu3 [201 kB] 328s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu3 [6768 B] 328s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.42-4ubuntu3 [747 kB] 328s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 328s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 328s Get:110 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpng-dev amd64 1.6.45-1 [300 kB] 328s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 328s Get:112 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 328s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 328s Get:114 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 328s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 328s Get:116 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 328s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 328s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 328s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 328s Get:120 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 328s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 328s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu1 [185 kB] 328s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 328s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-0ubuntu1 [67.5 kB] 328s Get:125 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-base-core amd64 4.4.2-1build1 [28.9 MB] 329s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 330s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 330s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 330s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 330s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 330s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 330s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 330s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.3-1 [189 kB] 330s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 330s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 330s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 330s Get:137 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-base-dev all 4.4.2-1build1 [4342 B] 330s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 330s Get:139 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 330s Get:140 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 330s Get:141 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 331s Get:142 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 331s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 331s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 331s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 331s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 331s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 331s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 331s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 331s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.0-1 [221 kB] 331s Get:151 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 331s Get:152 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB] 331s Get:153 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 331s Get:154 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 331s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 5.2.3+dfsg-1ubuntu1 [180 kB] 331s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.8.9+dfsg-1 [445 kB] 331s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 331s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 331s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 331s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.2.0+dfsg-1 [405 kB] 331s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 331s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 331s Get:163 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 331s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 332s Get:165 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-genomeinfodb all 1.42.1+dfsg-2 [3883 kB] 332s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 332s Get:167 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 332s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 332s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-1-1 [4199 kB] 332s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.4.1-1 [513 kB] 332s Get:171 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-matrixgenerics all 1.18.0-2 [446 kB] 333s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 333s Get:173 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 333s Get:174 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-sparsearray amd64 1.6.0+dfsg-2 [1392 kB] 333s Get:175 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 333s Get:176 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB] 333s Get:177 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 333s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-locfit amd64 1.5-9.10-1 [518 kB] 333s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.3-1 [1348 kB] 333s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 333s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.4-1 [1708 kB] 333s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 333s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 333s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 333s Get:185 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 333s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.166-1 [2314 kB] 333s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 333s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 333s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 333s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 333s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB] 333s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 333s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 333s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 333s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 334s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 334s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 334s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 334s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 334s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 334s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 334s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 334s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 334s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 334s Get:205 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 334s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpparmadillo amd64 14.2.2-1-1 [864 kB] 334s Get:207 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-deseq2 amd64 1.46.0+dfsg-2 [1250 kB] 335s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bitops amd64 1.0-8-1 [30.3 kB] 335s Get:209 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB] 335s Get:210 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB] 335s Get:211 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB] 335s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 335s Get:213 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-limma amd64 3.62.2+dfsg-1 [1969 kB] 335s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB] 335s Get:215 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-multtest amd64 2.62.0-2 [844 kB] 335s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml amd64 3.99-0.18-1 [1748 kB] 335s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB] 335s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB] 335s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 335s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 335s Get:221 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-rtracklayer amd64 1.66.0-2 [5227 kB] 335s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 335s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ape amd64 5.8-1 [2923 kB] 336s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 336s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 336s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 336s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 336s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 336s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 336s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 336s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.4+dfsg-1 [245 kB] 336s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 336s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 336s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.7.0+dfsg-1 [4255 kB] 336s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.8.0-1 [395 kB] 336s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.4-1 [353 kB] 336s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 336s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 336s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 336s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-e1071 amd64 1.7-16-1 [565 kB] 336s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-iterators all 1.0.14-1 [336 kB] 336s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-foreach all 1.5.2-1 [124 kB] 336s Get:243 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-data.table amd64 1.16.4+dfsg-1 [2032 kB] 336s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-modelmetrics amd64 1.2.2.2-1build1 [128 kB] 336s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 336s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-proc amd64 1.18.5-1 [966 kB] 336s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 336s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 336s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 336s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tzdb amd64 0.4.0-2 [521 kB] 336s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-clock amd64 0.7.1-1 [1804 kB] 336s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gower amd64 1.0.1-1 [207 kB] 336s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-hardhat all 1.4.0+dfsg-1 [565 kB] 336s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB] 336s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nnet amd64 7.3-20-1 [116 kB] 336s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shape all 1.4.6.1-1 [749 kB] 336s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diagram all 1.6.5-2 [656 kB] 336s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernsmooth amd64 2.23-26-1 [94.5 kB] 336s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-globals all 0.16.3-1 [120 kB] 336s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 336s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-parallelly amd64 1.38.0-1 [385 kB] 336s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 336s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future.apply all 1.11.2+dfsg-1 [172 kB] 336s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-numderiv all 2016.8-1.1-3 [115 kB] 336s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-progressr all 0.14.0-1 [338 kB] 336s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-squarem all 2021.1-1 [179 kB] 336s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lava all 1.7.3+dfsg-1 [2166 kB] 336s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-prodlim amd64 2024.06.25-1 [415 kB] 336s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ipred amd64 0.9-15-1 [386 kB] 336s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-timechange amd64 0.3.0-1 [178 kB] 336s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lubridate amd64 1.9.3+dfsg-1 [1010 kB] 337s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 337s Get:273 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB] 337s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 337s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 337s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-timedate amd64 4041.110-1 [1208 kB] 337s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-recipes all 1.1.0+dfsg-1 [2035 kB] 337s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-reshape2 amd64 1.4.4-2build1 [114 kB] 337s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-caret amd64 6.0-94+dfsg-1 [3434 kB] 337s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-catools amd64 1.18.2-1 [201 kB] 337s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cluster amd64 2.1.8-1 [579 kB] 337s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.0-1 [111 kB] 337s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.49+dfsg-1 [545 kB] 337s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 337s Get:285 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 337s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 337s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 337s Get:288 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.53-1 [145 kB] 337s Get:289 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 337s Get:290 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 337s Get:291 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.0+dfsg-1 [287 kB] 337s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 337s Get:293 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 337s Get:294 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 337s Get:295 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 337s Get:296 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 337s Get:297 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.9.1+dfsg-1 [3111 kB] 338s Get:298 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.28+dfsg-1 [1501 kB] 338s Get:299 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 338s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-miniui all 0.1.1.1-3build1 [36.1 kB] 338s Get:301 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shinyjs all 2.1.0-1 [967 kB] 338s Get:302 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colourpicker all 1.3.0+dfsg-1 [1191 kB] 338s Get:303 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-conquer amd64 1.3.3-1 [499 kB] 338s Get:304 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cowplot all 1.1.3+dfsg-1 [614 kB] 338s Get:305 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 338s Get:306 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 338s Get:307 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 338s Get:308 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deoptimr all 1.1-3-1-1 [76.6 kB] 338s Get:309 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 338s Get:310 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 339s Get:311 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dotcall64 amd64 1.1-1-1 [38.1 kB] 339s Get:312 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sitmo amd64 2.0.2-1 [130 kB] 339s Get:313 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dqrng amd64 0.3.2+dfsg-1 [161 kB] 339s Get:314 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastdummies all 1.7.4-1 [49.7 kB] 339s Get:315 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fitdistrplus all 1.2-1-1 [2038 kB] 339s Get:316 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB] 339s Get:317 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtools amd64 3.9.5-1 [340 kB] 339s Get:318 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gdata all 3.0.1-1 [491 kB] 339s Get:319 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggrepel amd64 0.9.5-2 [254 kB] 339s Get:320 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggridges all 0.5.6-1 [2195 kB] 339s Get:321 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-goftest amd64 1.2-3-1 [59.5 kB] 339s Get:322 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gplots all 3.2.0-1 [484 kB] 340s Get:323 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 340s Get:324 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 340s Get:325 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-here all 1.0.1-2 [50.3 kB] 340s Get:326 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ica all 1.0-3-1 [85.4 kB] 340s Get:327 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-igraph amd64 2.0.3-1 [5098 kB] 340s Get:328 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-irlba amd64 2.3.5.1-4 [295 kB] 340s Get:329 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernlab amd64 0.9-33-1 [1947 kB] 340s Get:330 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpptoml amd64 0.2.2+dfsg-1 [110 kB] 340s Get:331 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 340s Get:332 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-reticulate amd64 1.39.0+dfsg-1 [1238 kB] 340s Get:333 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-leiden all 0.4.3.1+dfsg-1 [71.9 kB] 340s Get:334 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-zoo amd64 1.8-12-2 [984 kB] 340s Get:335 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lmtest amd64 0.9.40-1 [396 kB] 340s Get:336 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mathjaxr all 1.6-0-1 [605 kB] 340s Get:337 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixmodels all 0.5-3-1 [361 kB] 340s Get:338 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rbibutils amd64 2.3-1 [1023 kB] 340s Get:339 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rdpack all 2.6.2-1 [757 kB] 340s Get:340 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mnormt amd64 2.1.1-2 [170 kB] 341s Get:341 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sparsem amd64 1.84-2-1 [813 kB] 341s Get:342 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-quantreg amd64 5.99.1-1 [1455 kB] 341s Get:343 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sn all 2.1.1-2 [1815 kB] 341s Get:344 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-mvtnorm amd64 1.3-3-1 [923 kB] 341s Get:345 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tfisher all 0.2.0-3 [79.8 kB] 341s Get:346 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plotrix all 3.8-4-1 [1120 kB] 341s Get:347 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-th.data all 1.1-2-2 [8794 kB] 341s Get:348 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sandwich all 3.1-1-1 [1483 kB] 341s Get:349 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-multcomp all 1.4-26-2 [699 kB] 341s Get:350 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mutoss all 0.1-13-1 [1123 kB] 341s Get:351 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-robustbase amd64 0.99-4-1-1 [3038 kB] 341s Get:352 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-qqconf amd64 1.3.2+dfsg-1 [157 kB] 341s Get:353 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-metap all 1.11-1 [570 kB] 342s Get:354 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plotly all 4.10.4+dfsg-2 [3666 kB] 342s Get:355 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-segmented all 2.1-3-1 [1366 kB] 342s Get:356 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mixtools amd64 2.0.0-1 [1399 kB] 342s Get:357 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-patchwork all 1.3.0-1 [3220 kB] 342s Get:358 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 342s Get:359 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.4-1 [212 kB] 342s Get:360 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 342s Get:361 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB] 342s Get:362 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 342s Get:363 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 342s Get:364 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.oo all 1.26.0-1 [955 kB] 342s Get:365 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.utils all 2.12.3-1 [1386 kB] 342s Get:366 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rann amd64 2.6.2-1 [46.3 kB] 342s Get:367 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppannoy amd64 0.0.22-1 [235 kB] 342s Get:368 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 342s Get:369 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpphnsw amd64 0.5.0+ds-1 [171 kB] 342s Get:370 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppprogress all 0.4.2-2build1 [22.0 kB] 342s Get:371 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rocr all 1.0-11-3 [456 kB] 342s Get:372 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rspectra amd64 0.16-2-1 [448 kB] 342s Get:373 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsvd all 1.0.5-1 [3589 kB] 342s Get:374 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rtsne amd64 0.17-1 [109 kB] 342s Get:375 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scattermore amd64 1.2-1 [331 kB] 342s Get:376 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sctransform amd64 0.4.1-1 [504 kB] 342s Get:377 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sp amd64 1:2.1-4+dfsg-1 [1472 kB] 342s Get:378 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spam amd64 2.11-0-1 [2758 kB] 343s Get:379 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-seuratobject amd64 5.0.2-1 [1744 kB] 343s Get:380 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.utils amd64 3.1-0-1 [381 kB] 343s Get:381 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.data all 3.1-2-1 [4039 kB] 343s Get:382 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.geom amd64 3.2-9-2 [3946 kB] 343s Get:383 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.random amd64 3.2-3-1 [1169 kB] 344s Get:384 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tensor all 1.5-4 [15.7 kB] 344s Get:385 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.sparse amd64 3.0-3-1 [215 kB] 344s Get:386 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.explore amd64 3.2-7-1 [3432 kB] 344s Get:387 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-uwot amd64 0.2.2-1 [947 kB] 344s Get:388 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-seurat amd64 5.1.0-1 [3255 kB] 344s Get:389 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-1 [150 kB] 344s Get:390 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.1.1-1 [1636 kB] 344s Get:391 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vgam amd64 1.1-11-1 [7726 kB] 346s Preconfiguring packages ... 346s Fetched 458 MB in 23s (20.1 MB/s) 346s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 346s Preparing to unpack .../gcc-14-base_14.2.0-13ubuntu1_amd64.deb ... 346s Unpacking gcc-14-base:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 346s Setting up gcc-14-base:amd64 (14.2.0-13ubuntu1) ... 346s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 346s Preparing to unpack .../libstdc++6_14.2.0-13ubuntu1_amd64.deb ... 346s Unpacking libstdc++6:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 346s Setting up libstdc++6:amd64 (14.2.0-13ubuntu1) ... 346s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 346s Preparing to unpack .../libatomic1_14.2.0-13ubuntu1_amd64.deb ... 346s Unpacking libatomic1:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 346s Preparing to unpack .../libgcc-s1_14.2.0-13ubuntu1_amd64.deb ... 346s Unpacking libgcc-s1:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 346s Setting up libgcc-s1:amd64 (14.2.0-13ubuntu1) ... 346s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 346s Preparing to unpack .../000-libpng16-16t64_1.6.45-1_amd64.deb ... 346s Unpacking libpng16-16t64:amd64 (1.6.45-1) over (1.6.44-3) ... 346s Selecting previously unselected package libisl23:amd64. 346s Preparing to unpack .../001-libisl23_0.27-1_amd64.deb ... 346s Unpacking libisl23:amd64 (0.27-1) ... 346s Selecting previously unselected package libmpc3:amd64. 346s Preparing to unpack .../002-libmpc3_1.3.1-1build2_amd64.deb ... 346s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 346s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 346s Preparing to unpack .../003-cpp-14-x86-64-linux-gnu_14.2.0-13ubuntu1_amd64.deb ... 346s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-13ubuntu1) ... 347s Selecting previously unselected package cpp-14. 347s Preparing to unpack .../004-cpp-14_14.2.0-13ubuntu1_amd64.deb ... 347s Unpacking cpp-14 (14.2.0-13ubuntu1) ... 347s Selecting previously unselected package cpp-x86-64-linux-gnu. 347s Preparing to unpack .../005-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 347s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 347s Selecting previously unselected package cpp. 347s Preparing to unpack .../006-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ... 347s Unpacking cpp (4:14.1.0-2ubuntu1) ... 347s Selecting previously unselected package libcc1-0:amd64. 347s Preparing to unpack .../007-libcc1-0_14.2.0-13ubuntu1_amd64.deb ... 347s Unpacking libcc1-0:amd64 (14.2.0-13ubuntu1) ... 347s Selecting previously unselected package libgomp1:amd64. 347s Preparing to unpack .../008-libgomp1_14.2.0-13ubuntu1_amd64.deb ... 347s Unpacking libgomp1:amd64 (14.2.0-13ubuntu1) ... 347s Selecting previously unselected package libitm1:amd64. 347s Preparing to unpack .../009-libitm1_14.2.0-13ubuntu1_amd64.deb ... 347s Unpacking libitm1:amd64 (14.2.0-13ubuntu1) ... 347s Selecting previously unselected package libasan8:amd64. 347s Preparing to unpack .../010-libasan8_14.2.0-13ubuntu1_amd64.deb ... 347s Unpacking libasan8:amd64 (14.2.0-13ubuntu1) ... 347s Selecting previously unselected package liblsan0:amd64. 347s Preparing to unpack .../011-liblsan0_14.2.0-13ubuntu1_amd64.deb ... 347s Unpacking liblsan0:amd64 (14.2.0-13ubuntu1) ... 347s Selecting previously unselected package libtsan2:amd64. 347s Preparing to unpack .../012-libtsan2_14.2.0-13ubuntu1_amd64.deb ... 347s Unpacking libtsan2:amd64 (14.2.0-13ubuntu1) ... 347s Selecting previously unselected package libubsan1:amd64. 347s Preparing to unpack .../013-libubsan1_14.2.0-13ubuntu1_amd64.deb ... 347s Unpacking libubsan1:amd64 (14.2.0-13ubuntu1) ... 347s Selecting previously unselected package libhwasan0:amd64. 347s Preparing to unpack .../014-libhwasan0_14.2.0-13ubuntu1_amd64.deb ... 347s Unpacking libhwasan0:amd64 (14.2.0-13ubuntu1) ... 347s Selecting previously unselected package libquadmath0:amd64. 347s Preparing to unpack .../015-libquadmath0_14.2.0-13ubuntu1_amd64.deb ... 347s Unpacking libquadmath0:amd64 (14.2.0-13ubuntu1) ... 347s Selecting previously unselected package libgcc-14-dev:amd64. 347s Preparing to unpack .../016-libgcc-14-dev_14.2.0-13ubuntu1_amd64.deb ... 347s Unpacking libgcc-14-dev:amd64 (14.2.0-13ubuntu1) ... 347s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 347s Preparing to unpack .../017-gcc-14-x86-64-linux-gnu_14.2.0-13ubuntu1_amd64.deb ... 347s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-13ubuntu1) ... 348s Selecting previously unselected package gcc-14. 348s Preparing to unpack .../018-gcc-14_14.2.0-13ubuntu1_amd64.deb ... 348s Unpacking gcc-14 (14.2.0-13ubuntu1) ... 348s Selecting previously unselected package gcc-x86-64-linux-gnu. 348s Preparing to unpack .../019-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 348s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 348s Selecting previously unselected package gcc. 348s Preparing to unpack .../020-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ... 348s Unpacking gcc (4:14.1.0-2ubuntu1) ... 348s Selecting previously unselected package libstdc++-14-dev:amd64. 348s Preparing to unpack .../021-libstdc++-14-dev_14.2.0-13ubuntu1_amd64.deb ... 348s Unpacking libstdc++-14-dev:amd64 (14.2.0-13ubuntu1) ... 348s Selecting previously unselected package g++-14-x86-64-linux-gnu. 348s Preparing to unpack .../022-g++-14-x86-64-linux-gnu_14.2.0-13ubuntu1_amd64.deb ... 348s Unpacking g++-14-x86-64-linux-gnu (14.2.0-13ubuntu1) ... 348s Selecting previously unselected package g++-14. 348s Preparing to unpack .../023-g++-14_14.2.0-13ubuntu1_amd64.deb ... 348s Unpacking g++-14 (14.2.0-13ubuntu1) ... 348s Selecting previously unselected package g++-x86-64-linux-gnu. 348s Preparing to unpack .../024-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 348s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 348s Selecting previously unselected package g++. 348s Preparing to unpack .../025-g++_4%3a14.1.0-2ubuntu1_amd64.deb ... 348s Unpacking g++ (4:14.1.0-2ubuntu1) ... 348s Selecting previously unselected package build-essential. 348s Preparing to unpack .../026-build-essential_12.10ubuntu1_amd64.deb ... 348s Unpacking build-essential (12.10ubuntu1) ... 348s Selecting previously unselected package dctrl-tools. 348s Preparing to unpack .../027-dctrl-tools_2.24-3build3_amd64.deb ... 348s Unpacking dctrl-tools (2.24-3build3) ... 348s Selecting previously unselected package fonts-dejavu-mono. 348s Preparing to unpack .../028-fonts-dejavu-mono_2.37-8_all.deb ... 348s Unpacking fonts-dejavu-mono (2.37-8) ... 348s Selecting previously unselected package fonts-dejavu-core. 348s Preparing to unpack .../029-fonts-dejavu-core_2.37-8_all.deb ... 348s Unpacking fonts-dejavu-core (2.37-8) ... 349s Selecting previously unselected package fontconfig-config. 349s Preparing to unpack .../030-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 349s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 349s Selecting previously unselected package libfontconfig1:amd64. 349s Preparing to unpack .../031-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 349s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 349s Selecting previously unselected package fontconfig. 349s Preparing to unpack .../032-fontconfig_2.15.0-1.1ubuntu2_amd64.deb ... 349s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 349s Selecting previously unselected package fonts-font-awesome. 349s Preparing to unpack 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package gfortran-14-x86-64-linux-gnu. 349s Preparing to unpack .../038-gfortran-14-x86-64-linux-gnu_14.2.0-13ubuntu1_amd64.deb ... 349s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-13ubuntu1) ... 349s Selecting previously unselected package gfortran-14. 349s Preparing to unpack .../039-gfortran-14_14.2.0-13ubuntu1_amd64.deb ... 349s Unpacking gfortran-14 (14.2.0-13ubuntu1) ... 349s Selecting previously unselected package gfortran-x86-64-linux-gnu. 349s Preparing to unpack .../040-gfortran-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 349s Unpacking gfortran-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 349s Selecting previously unselected package gfortran. 349s Preparing to unpack .../041-gfortran_4%3a14.1.0-2ubuntu1_amd64.deb ... 349s Unpacking gfortran (4:14.1.0-2ubuntu1) ... 349s Selecting previously unselected package icu-devtools. 349s Preparing to unpack .../042-icu-devtools_76.1-1ubuntu2_amd64.deb ... 349s Unpacking icu-devtools (76.1-1ubuntu2) ... 350s Selecting previously unselected package javascript-common. 350s Preparing to unpack .../043-javascript-common_11+nmu1_all.deb ... 350s Unpacking javascript-common (11+nmu1) ... 350s Selecting previously unselected package libsuitesparseconfig7:amd64. 350s Preparing to unpack .../044-libsuitesparseconfig7_1%3a7.8.3+dfsg-2_amd64.deb ... 350s Unpacking libsuitesparseconfig7:amd64 (1:7.8.3+dfsg-2) ... 350s Selecting previously unselected package libamd3:amd64. 350s Preparing to unpack .../045-libamd3_1%3a7.8.3+dfsg-2_amd64.deb ... 350s Unpacking libamd3:amd64 (1:7.8.3+dfsg-2) ... 350s Selecting previously unselected package libblas3:amd64. 350s Preparing to unpack .../046-libblas3_3.12.0-4_amd64.deb ... 350s Unpacking libblas3:amd64 (3.12.0-4) ... 350s Selecting previously unselected package libblas-dev:amd64. 350s Preparing to unpack .../047-libblas-dev_3.12.0-4_amd64.deb ... 350s Unpacking libblas-dev:amd64 (3.12.0-4) ... 350s Selecting previously unselected package libboost1.83-dev:amd64. 350s Preparing to 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352s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 352s Selecting previously unselected package libxrender1:amd64. 352s Preparing to unpack .../054-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 352s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 352s Selecting previously unselected package libcairo2:amd64. 352s Preparing to unpack .../055-libcairo2_1.18.2-2_amd64.deb ... 352s Unpacking libcairo2:amd64 (1.18.2-2) ... 352s Selecting previously unselected package libcolamd3:amd64. 352s Preparing to unpack .../056-libcolamd3_1%3a7.8.3+dfsg-2_amd64.deb ... 352s Unpacking libcolamd3:amd64 (1:7.8.3+dfsg-2) ... 352s Selecting previously unselected package libdatrie1:amd64. 352s Preparing to unpack .../057-libdatrie1_0.2.13-3build1_amd64.deb ... 352s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 352s Selecting previously unselected package libdeflate0:amd64. 352s Preparing to unpack .../058-libdeflate0_1.23-1_amd64.deb ... 352s Unpacking libdeflate0:amd64 (1.23-1) ... 352s Selecting previously unselected package libdeflate-dev:amd64. 352s Preparing to unpack .../059-libdeflate-dev_1.23-1_amd64.deb ... 352s Unpacking libdeflate-dev:amd64 (1.23-1) ... 352s Selecting previously unselected package libfftw3-double3:amd64. 352s Preparing to unpack .../060-libfftw3-double3_3.3.10-2fakesync1build1_amd64.deb ... 352s Unpacking libfftw3-double3:amd64 (3.3.10-2fakesync1build1) ... 352s Selecting previously unselected package libltdl7:amd64. 352s Preparing to unpack .../061-libltdl7_2.5.4-2_amd64.deb ... 352s Unpacking libltdl7:amd64 (2.5.4-2) ... 352s Selecting previously unselected package libglpk40:amd64. 353s Preparing to unpack .../062-libglpk40_5.0-1build2_amd64.deb ... 353s Unpacking libglpk40:amd64 (5.0-1build2) ... 353s Selecting previously unselected package libgraphite2-3:amd64. 353s Preparing to unpack .../063-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 353s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 353s Selecting previously unselected package libharfbuzz0b:amd64. 353s Preparing to unpack .../064-libharfbuzz0b_10.2.0-1_amd64.deb ... 353s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 353s Selecting previously unselected package x11-common. 353s Preparing to unpack .../065-x11-common_1%3a7.7+23ubuntu3_all.deb ... 353s Unpacking x11-common (1:7.7+23ubuntu3) ... 353s Selecting previously unselected package libice6:amd64. 353s Preparing to unpack .../066-libice6_2%3a1.1.1-1_amd64.deb ... 353s Unpacking libice6:amd64 (2:1.1.1-1) ... 353s Selecting previously unselected package libicu-dev:amd64. 353s Preparing to unpack .../067-libicu-dev_76.1-1ubuntu2_amd64.deb ... 353s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ... 353s Selecting previously unselected package libjpeg-turbo8:amd64. 353s Preparing to unpack .../068-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 353s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 353s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 353s Preparing to unpack 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package libjs-jquery-datatables. 354s Preparing to unpack .../080-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 354s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 354s Selecting previously unselected package libjs-sifter.js. 354s Preparing to unpack .../081-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 354s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 354s Selecting previously unselected package libjs-microplugin.js. 354s Preparing to unpack .../082-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 354s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 354s Selecting previously unselected package libjs-jquery-selectize.js. 354s Preparing to unpack .../083-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 354s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 354s Selecting previously unselected package libjs-jquery-ui. 354s Preparing to unpack .../084-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 354s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 354s Selecting previously unselected package libjs-json. 354s Preparing to unpack .../085-libjs-json_0~20221030+~1.0.8-1_all.deb ... 354s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 354s Selecting previously unselected package libjs-prettify. 354s Preparing to unpack .../086-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 354s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 354s Selecting previously unselected package liblapack3:amd64. 354s Preparing to unpack .../087-liblapack3_3.12.0-4_amd64.deb ... 354s Unpacking liblapack3:amd64 (3.12.0-4) ... 354s Selecting previously unselected package liblapack-dev:amd64. 354s Preparing to unpack .../088-liblapack-dev_3.12.0-4_amd64.deb ... 354s Unpacking liblapack-dev:amd64 (3.12.0-4) ... 354s Selecting previously unselected package liblerc4:amd64. 354s Preparing to unpack .../089-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 354s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 354s Selecting previously unselected package liblua5.4-0:amd64. 354s Preparing to 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Selecting previously unselected package libpcre2-posix3:amd64. 355s Preparing to unpack .../101-libpcre2-posix3_10.42-4ubuntu3_amd64.deb ... 355s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu3) ... 355s Selecting previously unselected package libpcre2-dev:amd64. 355s Preparing to unpack .../102-libpcre2-dev_10.42-4ubuntu3_amd64.deb ... 355s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu3) ... 355s Selecting previously unselected package libpkgconf3:amd64. 355s Preparing to unpack .../103-libpkgconf3_1.8.1-4_amd64.deb ... 355s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 355s Selecting previously unselected package zlib1g-dev:amd64. 355s Preparing to unpack .../104-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 355s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 355s Selecting previously unselected package libpng-dev:amd64. 355s Preparing to unpack .../105-libpng-dev_1.6.45-1_amd64.deb ... 355s Unpacking libpng-dev:amd64 (1.6.45-1) ... 355s Selecting previously unselected package libreadline-dev:amd64. 355s Preparing to unpack .../106-libreadline-dev_8.2-6_amd64.deb ... 355s Unpacking libreadline-dev:amd64 (8.2-6) ... 355s Selecting previously unselected package libsharpyuv0:amd64. 355s Preparing to unpack .../107-libsharpyuv0_1.5.0-0.1_amd64.deb ... 355s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 355s Selecting previously unselected package libsm6:amd64. 355s Preparing to unpack .../108-libsm6_2%3a1.2.4-1_amd64.deb ... 355s Unpacking libsm6:amd64 (2:1.2.4-1) ... 355s Selecting previously unselected package libtcl8.6:amd64. 355s Preparing to unpack .../109-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 355s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 355s Selecting previously unselected package libjbig0:amd64. 355s Preparing to unpack .../110-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 355s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 355s Selecting previously unselected package libwebp7:amd64. 355s Preparing to unpack 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(1:1.2.1-1.2build1) ... 355s Selecting previously unselected package zip. 355s Preparing to unpack .../117-zip_3.0-14ubuntu1_amd64.deb ... 355s Unpacking zip (3.0-14ubuntu1) ... 355s Selecting previously unselected package unzip. 355s Preparing to unpack .../118-unzip_6.0-28ubuntu6_amd64.deb ... 355s Unpacking unzip (6.0-28ubuntu6) ... 355s Selecting previously unselected package xdg-utils. 355s Preparing to unpack .../119-xdg-utils_1.2.1-0ubuntu1_all.deb ... 355s Unpacking xdg-utils (1.2.1-0ubuntu1) ... 355s Selecting previously unselected package r-base-core. 355s Preparing to unpack .../120-r-base-core_4.4.2-1build1_amd64.deb ... 355s Unpacking r-base-core (4.4.2-1build1) ... 356s Selecting previously unselected package r-cran-littler. 356s Preparing to unpack .../121-r-cran-littler_0.3.20-2_amd64.deb ... 356s Unpacking r-cran-littler (0.3.20-2) ... 356s Selecting previously unselected package littler. 356s Preparing to unpack .../122-littler_0.3.20-2_all.deb ... 356s Unpacking littler (0.3.20-2) ... 356s Selecting previously unselected package node-bootstrap-sass. 356s Preparing to unpack .../123-node-bootstrap-sass_3.4.3-2_all.deb ... 356s Unpacking node-bootstrap-sass (3.4.3-2) ... 356s Selecting previously unselected package node-html5shiv. 356s Preparing to unpack .../124-node-html5shiv_3.7.3+dfsg-5_all.deb ... 356s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 356s Selecting previously unselected package node-normalize.css. 356s Preparing to unpack .../125-node-normalize.css_8.0.1-5_all.deb ... 356s Unpacking node-normalize.css (8.0.1-5) ... 356s Selecting previously unselected package pandoc-data. 356s Preparing to unpack .../126-pandoc-data_3.1.11.1-3build1_all.deb ... 356s Unpacking pandoc-data (3.1.11.1-3build1) ... 356s Selecting previously unselected package pandoc. 356s Preparing to unpack .../127-pandoc_3.1.11.1+ds-2_amd64.deb ... 356s Unpacking pandoc (3.1.11.1+ds-2) ... 357s Selecting previously unselected package liblzma-dev:amd64. 357s Preparing to unpack .../128-liblzma-dev_5.6.3-1_amd64.deb ... 357s Unpacking liblzma-dev:amd64 (5.6.3-1) ... 357s Selecting previously unselected package pkgconf-bin. 357s Preparing to unpack .../129-pkgconf-bin_1.8.1-4_amd64.deb ... 357s Unpacking pkgconf-bin (1.8.1-4) ... 357s Selecting previously unselected package pkgconf:amd64. 357s Preparing to unpack .../130-pkgconf_1.8.1-4_amd64.deb ... 357s Unpacking pkgconf:amd64 (1.8.1-4) ... 357s Selecting previously unselected package libtirpc-dev:amd64. 357s Preparing to unpack .../131-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 357s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 357s Selecting previously unselected package r-base-dev. 357s Preparing to unpack .../132-r-base-dev_4.4.2-1build1_all.deb ... 357s Unpacking r-base-dev (4.4.2-1build1) ... 357s Selecting previously unselected package pkg-r-autopkgtest. 357s Preparing to unpack .../133-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 357s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 357s Selecting previously unselected package r-bioc-biocgenerics. 357s Preparing to unpack .../134-r-bioc-biocgenerics_0.52.0-2_all.deb ... 357s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 357s Selecting previously unselected package r-bioc-biobase. 357s Preparing to unpack .../135-r-bioc-biobase_2.66.0-2_amd64.deb ... 357s Unpacking r-bioc-biobase (2.66.0-2) ... 357s Selecting previously unselected package r-bioc-s4vectors. 357s Preparing to unpack .../136-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 357s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 357s Selecting previously unselected package r-bioc-biocio. 357s Preparing to unpack .../137-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 357s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 357s Selecting previously unselected package r-cran-formatr. 357s Preparing to unpack .../138-r-cran-formatr_1.14-2_all.deb ... 357s Unpacking r-cran-formatr (1.14-2) ... 357s Selecting previously unselected package r-cran-lambda.r. 357s Preparing to unpack .../139-r-cran-lambda.r_1.2.4-2build1_all.deb ... 357s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 357s Selecting previously unselected package r-cran-futile.options. 357s Preparing to unpack .../140-r-cran-futile.options_1.0.1-3build1_all.deb ... 357s Unpacking r-cran-futile.options (1.0.1-3build1) ... 357s Selecting previously unselected package r-cran-futile.logger. 357s Preparing to unpack .../141-r-cran-futile.logger_1.4.3-4build1_all.deb ... 357s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 357s Selecting previously unselected package r-cran-snow. 357s Preparing to unpack .../142-r-cran-snow_1%3a0.4.4-2_all.deb ... 357s Unpacking r-cran-snow (1:0.4.4-2) ... 357s Selecting previously unselected package r-cran-codetools. 357s Preparing to unpack .../143-r-cran-codetools_0.2-20-1_all.deb ... 357s Unpacking r-cran-codetools (0.2-20-1) ... 357s Selecting previously unselected package r-cran-bh. 357s Preparing to unpack .../144-r-cran-bh_1.84.0-1_all.deb ... 357s Unpacking r-cran-bh (1.84.0-1) ... 357s Selecting previously unselected package r-cran-cpp11. 357s Preparing to unpack .../145-r-cran-cpp11_0.5.0-1_all.deb ... 357s Unpacking r-cran-cpp11 (0.5.0-1) ... 357s Selecting previously unselected package r-bioc-biocparallel. 357s Preparing to unpack .../146-r-bioc-biocparallel_1.40.0-2_amd64.deb ... 357s Unpacking r-bioc-biocparallel (1.40.0-2) ... 357s Selecting previously unselected package r-bioc-iranges. 357s Preparing to unpack .../147-r-bioc-iranges_2.40.1-2_amd64.deb ... 357s Unpacking r-bioc-iranges (2.40.1-2) ... 358s Selecting previously unselected package r-bioc-zlibbioc. 358s Preparing to unpack .../148-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 358s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 358s Selecting previously unselected package r-bioc-xvector. 358s Preparing to unpack .../149-r-bioc-xvector_0.46.0-2_amd64.deb ... 358s Unpacking r-bioc-xvector (0.46.0-2) ... 358s Selecting previously unselected package r-cran-curl. 358s Preparing to unpack .../150-r-cran-curl_5.2.3+dfsg-1ubuntu1_amd64.deb ... 358s Unpacking r-cran-curl (5.2.3+dfsg-1ubuntu1) ... 358s Selecting previously unselected package r-cran-jsonlite. 358s Preparing to unpack .../151-r-cran-jsonlite_1.8.9+dfsg-1_amd64.deb ... 358s Unpacking r-cran-jsonlite (1.8.9+dfsg-1) ... 358s Selecting previously unselected package r-cran-mime. 358s Preparing to unpack .../152-r-cran-mime_0.12-2_amd64.deb ... 358s Unpacking r-cran-mime (0.12-2) ... 358s Selecting previously unselected package r-cran-sys. 358s Preparing to unpack .../153-r-cran-sys_3.4.3-1_amd64.deb ... 358s Unpacking r-cran-sys (3.4.3-1) ... 358s Selecting previously unselected package r-cran-askpass. 358s Preparing to unpack .../154-r-cran-askpass_1.2.1-1_amd64.deb ... 358s Unpacking r-cran-askpass (1.2.1-1) ... 358s Selecting previously unselected package r-cran-openssl. 358s Preparing to unpack .../155-r-cran-openssl_2.2.0+dfsg-1_amd64.deb ... 358s Unpacking r-cran-openssl (2.2.0+dfsg-1) ... 358s Selecting previously unselected package r-cran-r6. 358s Preparing to unpack .../156-r-cran-r6_2.5.1-1_all.deb ... 358s Unpacking r-cran-r6 (2.5.1-1) ... 358s Selecting previously unselected package r-cran-httr. 358s Preparing to unpack .../157-r-cran-httr_1.4.7+dfsg-1_all.deb ... 358s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 358s Selecting previously unselected package r-bioc-ucsc.utils. 358s Preparing to unpack .../158-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 358s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 358s Selecting previously unselected package r-bioc-genomeinfodbdata. 358s Preparing to unpack .../159-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 358s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 358s Selecting previously unselected package r-bioc-genomeinfodb. 358s Preparing to unpack .../160-r-bioc-genomeinfodb_1.42.1+dfsg-2_all.deb ... 358s Unpacking r-bioc-genomeinfodb (1.42.1+dfsg-2) ... 358s Selecting previously unselected package r-cran-crayon. 358s Preparing to unpack .../161-r-cran-crayon_1.5.2-1_all.deb ... 358s Unpacking r-cran-crayon (1.5.2-1) ... 358s Selecting previously unselected package r-bioc-biostrings. 358s Preparing to unpack .../162-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 358s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 358s Selecting previously unselected package r-cran-lattice. 358s Preparing to unpack .../163-r-cran-lattice_0.22-6-1_amd64.deb ... 358s Unpacking r-cran-lattice (0.22-6-1) ... 358s Selecting previously unselected package r-cran-matrix. 358s Preparing to unpack .../164-r-cran-matrix_1.7-1-1_amd64.deb ... 358s Unpacking r-cran-matrix (1.7-1-1) ... 358s Selecting previously unselected package r-cran-matrixstats. 358s Preparing to unpack .../165-r-cran-matrixstats_1.4.1-1_amd64.deb ... 358s Unpacking r-cran-matrixstats (1.4.1-1) ... 358s Selecting previously unselected package r-bioc-matrixgenerics. 358s Preparing to unpack .../166-r-bioc-matrixgenerics_1.18.0-2_all.deb ... 358s Unpacking r-bioc-matrixgenerics (1.18.0-2) ... 359s Selecting previously unselected package r-cran-abind. 359s Preparing to unpack .../167-r-cran-abind_1.4-8-1_all.deb ... 359s Unpacking r-cran-abind (1.4-8-1) ... 359s Selecting previously unselected package r-bioc-s4arrays. 359s Preparing to unpack .../168-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ... 359s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 359s Selecting previously unselected package r-bioc-sparsearray. 359s Preparing to unpack .../169-r-bioc-sparsearray_1.6.0+dfsg-2_amd64.deb ... 359s Unpacking r-bioc-sparsearray (1.6.0+dfsg-2) ... 359s Selecting previously unselected package r-bioc-delayedarray. 359s Preparing to unpack .../170-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ... 359s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 359s Selecting previously unselected package r-bioc-genomicranges. 359s Preparing to unpack .../171-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ... 359s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 359s Selecting previously unselected package r-bioc-summarizedexperiment. 359s Preparing to unpack .../172-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 359s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 359s Selecting previously unselected package r-cran-locfit. 359s Preparing to unpack .../173-r-cran-locfit_1.5-9.10-1_amd64.deb ... 359s Unpacking r-cran-locfit (1.5-9.10-1) ... 359s Selecting previously unselected package r-cran-cli. 359s Preparing to unpack .../174-r-cran-cli_3.6.3-1_amd64.deb ... 359s Unpacking r-cran-cli (3.6.3-1) ... 359s Selecting previously unselected package r-cran-glue. 359s Preparing to unpack .../175-r-cran-glue_1.8.0-1_amd64.deb ... 359s Unpacking r-cran-glue (1.8.0-1) ... 359s Selecting previously unselected package r-cran-rlang. 359s Preparing to unpack .../176-r-cran-rlang_1.1.4-1_amd64.deb ... 359s Unpacking r-cran-rlang (1.1.4-1) ... 359s Selecting previously unselected package r-cran-lifecycle. 359s Preparing to unpack .../177-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 359s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 359s Selecting previously unselected package r-cran-gtable. 359s Preparing to unpack .../178-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 359s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 359s Selecting previously unselected package r-cran-isoband. 359s Preparing to unpack .../179-r-cran-isoband_0.2.7-1_amd64.deb ... 359s Unpacking r-cran-isoband (0.2.7-1) ... 359s Selecting previously unselected package r-cran-mass. 359s Preparing to unpack .../180-r-cran-mass_7.3-64-1_amd64.deb ... 359s Unpacking r-cran-mass (7.3-64-1) ... 359s Selecting previously unselected package r-cran-nlme. 359s Preparing to unpack .../181-r-cran-nlme_3.1.166-1_amd64.deb ... 359s Unpacking r-cran-nlme (3.1.166-1) ... 359s Selecting previously unselected package r-cran-mgcv. 359s Preparing to unpack .../182-r-cran-mgcv_1.9-1-1_amd64.deb ... 359s Unpacking r-cran-mgcv (1.9-1-1) ... 359s Selecting previously unselected package r-cran-farver. 359s Preparing to unpack .../183-r-cran-farver_2.1.2-1_amd64.deb ... 359s Unpacking r-cran-farver (2.1.2-1) ... 359s Selecting previously unselected package r-cran-labeling. 359s Preparing to unpack .../184-r-cran-labeling_0.4.3-1_all.deb ... 359s Unpacking r-cran-labeling (0.4.3-1) ... 359s Selecting previously unselected package r-cran-colorspace. 359s Preparing to unpack .../185-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ... 359s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 359s Selecting previously unselected package r-cran-munsell. 359s Preparing to unpack .../186-r-cran-munsell_0.5.1-1_all.deb ... 359s Unpacking r-cran-munsell (0.5.1-1) ... 360s Selecting previously unselected package r-cran-rcolorbrewer. 360s Preparing to unpack .../187-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 360s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 360s Selecting previously unselected package r-cran-viridislite. 360s Preparing to unpack .../188-r-cran-viridislite_0.4.2-2_all.deb ... 360s Unpacking r-cran-viridislite (0.4.2-2) ... 360s Selecting previously unselected package r-cran-scales. 360s Preparing to unpack .../189-r-cran-scales_1.3.0-1_all.deb ... 360s Unpacking r-cran-scales (1.3.0-1) ... 360s Selecting previously unselected package r-cran-fansi. 360s Preparing to unpack .../190-r-cran-fansi_1.0.5-1_amd64.deb ... 360s Unpacking r-cran-fansi (1.0.5-1) ... 360s Selecting previously unselected package r-cran-magrittr. 360s Preparing to unpack .../191-r-cran-magrittr_2.0.3-1_amd64.deb ... 360s Unpacking r-cran-magrittr (2.0.3-1) ... 360s Selecting previously unselected package r-cran-utf8. 360s Preparing to unpack .../192-r-cran-utf8_1.2.4-1_amd64.deb ... 360s Unpacking r-cran-utf8 (1.2.4-1) ... 360s Selecting previously unselected package r-cran-vctrs. 360s Preparing to unpack .../193-r-cran-vctrs_0.6.5-1_amd64.deb ... 360s Unpacking r-cran-vctrs (0.6.5-1) ... 360s Selecting previously unselected package r-cran-pillar. 360s Preparing to unpack .../194-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 360s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 360s Selecting previously unselected package r-cran-pkgconfig. 360s Preparing to unpack .../195-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 360s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 360s Selecting previously unselected package r-cran-tibble. 360s Preparing to unpack .../196-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 360s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 360s Selecting previously unselected package r-cran-withr. 360s Preparing to unpack .../197-r-cran-withr_3.0.2+dfsg-1_all.deb ... 360s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 360s Selecting previously unselected package r-cran-ggplot2. 360s Preparing to unpack .../198-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 360s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 360s Selecting previously unselected package r-cran-pkgkitten. 360s Preparing to unpack .../199-r-cran-pkgkitten_0.2.4-1_all.deb ... 360s Unpacking r-cran-pkgkitten (0.2.4-1) ... 360s Selecting previously unselected package r-cran-rcpp. 360s Preparing to unpack .../200-r-cran-rcpp_1.0.14-1_amd64.deb ... 360s Unpacking r-cran-rcpp (1.0.14-1) ... 360s Selecting previously unselected package r-cran-rcpparmadillo. 360s Preparing to unpack .../201-r-cran-rcpparmadillo_14.2.2-1-1_amd64.deb ... 360s Unpacking r-cran-rcpparmadillo (14.2.2-1-1) ... 360s Selecting previously unselected package r-bioc-deseq2. 360s Preparing to unpack .../202-r-bioc-deseq2_1.46.0+dfsg-2_amd64.deb ... 360s Unpacking r-bioc-deseq2 (1.46.0+dfsg-2) ... 360s Selecting previously unselected package r-cran-bitops. 360s Preparing to unpack .../203-r-cran-bitops_1.0-8-1_amd64.deb ... 360s Unpacking r-cran-bitops (1.0-8-1) ... 361s Selecting previously unselected package r-bioc-rhtslib. 361s Preparing to unpack .../204-r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb ... 361s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 361s Selecting previously unselected package r-bioc-rsamtools. 361s Preparing to unpack .../205-r-bioc-rsamtools_2.22.0+dfsg-2_amd64.deb ... 361s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 361s Selecting previously unselected package r-bioc-genomicalignments. 361s Preparing to unpack .../206-r-bioc-genomicalignments_1.42.0-2_amd64.deb ... 361s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 361s Selecting previously unselected package r-cran-statmod. 361s Preparing to unpack .../207-r-cran-statmod_1.5.0-1_amd64.deb ... 361s Unpacking r-cran-statmod (1.5.0-1) ... 361s Selecting previously unselected package r-bioc-limma. 361s Preparing to unpack .../208-r-bioc-limma_3.62.2+dfsg-1_amd64.deb ... 361s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 361s Selecting previously unselected package r-cran-survival. 361s Preparing to unpack .../209-r-cran-survival_3.8-3-1_amd64.deb ... 361s Unpacking r-cran-survival (3.8-3-1) ... 361s Selecting previously unselected package r-bioc-multtest. 361s Preparing to unpack .../210-r-bioc-multtest_2.62.0-2_amd64.deb ... 361s Unpacking r-bioc-multtest (2.62.0-2) ... 361s Selecting previously unselected package r-cran-xml. 361s Preparing to unpack .../211-r-cran-xml_3.99-0.18-1_amd64.deb ... 361s Unpacking r-cran-xml (3.99-0.18-1) ... 361s Selecting previously unselected package r-cran-rcurl. 361s Preparing to unpack .../212-r-cran-rcurl_1.98-1.16+dfsg-1_amd64.deb ... 361s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 361s Selecting previously unselected package r-cran-rjson. 361s Preparing to unpack .../213-r-cran-rjson_0.2.23-1_amd64.deb ... 361s Unpacking r-cran-rjson (0.2.23-1) ... 361s Selecting previously unselected package r-cran-yaml. 361s Preparing to unpack .../214-r-cran-yaml_2.3.10-1_amd64.deb ... 361s Unpacking r-cran-yaml (2.3.10-1) ... 361s Selecting previously unselected package r-cran-restfulr. 361s Preparing to unpack .../215-r-cran-restfulr_0.0.15-1_amd64.deb ... 361s Unpacking r-cran-restfulr (0.0.15-1) ... 361s Selecting previously unselected package r-bioc-rtracklayer. 361s Preparing to unpack .../216-r-bioc-rtracklayer_1.66.0-2_amd64.deb ... 361s Unpacking r-bioc-rtracklayer (1.66.0-2) ... 361s Selecting previously unselected package r-cran-digest. 361s Preparing to unpack .../217-r-cran-digest_0.6.37-1_amd64.deb ... 361s Unpacking r-cran-digest (0.6.37-1) ... 361s Selecting previously unselected package r-cran-ape. 361s Preparing to unpack .../218-r-cran-ape_5.8-1_amd64.deb ... 361s Unpacking r-cran-ape (5.8-1) ... 361s Selecting previously unselected package r-cran-base64enc. 361s Preparing to unpack .../219-r-cran-base64enc_0.1-3-3_amd64.deb ... 361s Unpacking r-cran-base64enc (0.1-3-3) ... 361s Selecting previously unselected package r-cran-brio. 361s Preparing to unpack .../220-r-cran-brio_1.1.5-1_amd64.deb ... 361s Unpacking r-cran-brio (1.1.5-1) ... 361s Selecting previously unselected package r-cran-fastmap. 361s Preparing to unpack .../221-r-cran-fastmap_1.2.0-1_amd64.deb ... 361s Unpacking r-cran-fastmap (1.2.0-1) ... 361s Selecting previously unselected package r-cran-cachem. 361s Preparing to unpack .../222-r-cran-cachem_1.1.0-1_amd64.deb ... 361s Unpacking r-cran-cachem (1.1.0-1) ... 361s Selecting previously unselected package r-cran-htmltools. 361s Preparing to unpack .../223-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 361s Unpacking r-cran-htmltools (0.5.8.1-1) ... 361s Selecting previously unselected package r-cran-jquerylib. 361s Preparing to unpack .../224-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 361s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 362s Selecting previously unselected package r-cran-memoise. 362s Preparing to unpack .../225-r-cran-memoise_2.0.1-1_all.deb ... 362s Unpacking r-cran-memoise (2.0.1-1) ... 362s Selecting previously unselected package r-cran-fs. 362s Preparing to unpack .../226-r-cran-fs_1.6.4+dfsg-1_amd64.deb ... 362s Unpacking r-cran-fs (1.6.4+dfsg-1) ... 362s Selecting previously unselected package r-cran-rappdirs. 362s Preparing to unpack .../227-r-cran-rappdirs_0.3.3-1_amd64.deb ... 362s Unpacking r-cran-rappdirs (0.3.3-1) ... 362s Selecting previously unselected package r-cran-sass. 362s Preparing to unpack .../228-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 362s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 362s Selecting previously unselected package r-cran-bslib. 362s Preparing to unpack .../229-r-cran-bslib_0.7.0+dfsg-1_all.deb ... 362s Unpacking r-cran-bslib (0.7.0+dfsg-1) ... 362s Selecting previously unselected package r-cran-ps. 362s Preparing to unpack .../230-r-cran-ps_1.8.0-1_amd64.deb ... 362s Unpacking r-cran-ps (1.8.0-1) ... 362s Selecting previously unselected package r-cran-processx. 362s Preparing to unpack .../231-r-cran-processx_3.8.4-1_amd64.deb ... 362s Unpacking r-cran-processx (3.8.4-1) ... 362s Selecting previously unselected package r-cran-callr. 362s Preparing to unpack .../232-r-cran-callr_3.7.6-1_all.deb ... 362s Unpacking r-cran-callr (3.7.6-1) ... 362s Selecting previously unselected package r-cran-class. 362s Preparing to unpack .../233-r-cran-class_7.3-23-1_amd64.deb ... 362s Unpacking r-cran-class (7.3-23-1) ... 362s Selecting previously unselected package r-cran-proxy. 362s Preparing to unpack .../234-r-cran-proxy_0.4-27-1_amd64.deb ... 362s Unpacking r-cran-proxy (0.4-27-1) ... 362s Selecting previously unselected package r-cran-e1071. 362s Preparing to unpack .../235-r-cran-e1071_1.7-16-1_amd64.deb ... 362s Unpacking r-cran-e1071 (1.7-16-1) ... 362s Selecting previously unselected package r-cran-iterators. 362s Preparing to unpack .../236-r-cran-iterators_1.0.14-1_all.deb ... 362s Unpacking r-cran-iterators (1.0.14-1) ... 362s Selecting previously unselected package r-cran-foreach. 362s Preparing to unpack .../237-r-cran-foreach_1.5.2-1_all.deb ... 362s Unpacking r-cran-foreach (1.5.2-1) ... 362s Selecting previously unselected package r-cran-data.table. 362s Preparing to unpack .../238-r-cran-data.table_1.16.4+dfsg-1_amd64.deb ... 362s Unpacking r-cran-data.table (1.16.4+dfsg-1) ... 362s Selecting previously unselected package r-cran-modelmetrics. 362s Preparing to unpack .../239-r-cran-modelmetrics_1.2.2.2-1build1_amd64.deb ... 362s Unpacking r-cran-modelmetrics (1.2.2.2-1build1) ... 362s Selecting previously unselected package r-cran-plyr. 362s Preparing to unpack .../240-r-cran-plyr_1.8.9-1_amd64.deb ... 362s Unpacking r-cran-plyr (1.8.9-1) ... 362s Selecting previously unselected package r-cran-proc. 362s Preparing to unpack .../241-r-cran-proc_1.18.5-1_amd64.deb ... 362s Unpacking r-cran-proc (1.18.5-1) ... 362s Selecting previously unselected package r-cran-generics. 362s Preparing to unpack .../242-r-cran-generics_0.1.3-1_all.deb ... 362s Unpacking r-cran-generics (0.1.3-1) ... 362s Selecting previously unselected package r-cran-tidyselect. 362s Preparing to unpack .../243-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 362s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 362s Selecting previously unselected package r-cran-dplyr. 362s Preparing to unpack .../244-r-cran-dplyr_1.1.4-4_amd64.deb ... 362s Unpacking r-cran-dplyr (1.1.4-4) ... 363s Selecting previously unselected package r-cran-tzdb. 363s Preparing to unpack .../245-r-cran-tzdb_0.4.0-2_amd64.deb ... 363s Unpacking r-cran-tzdb (0.4.0-2) ... 363s Selecting previously unselected package r-cran-clock. 363s Preparing to unpack .../246-r-cran-clock_0.7.1-1_amd64.deb ... 363s Unpacking r-cran-clock (0.7.1-1) ... 363s Selecting previously unselected package r-cran-gower. 363s Preparing to unpack .../247-r-cran-gower_1.0.1-1_amd64.deb ... 363s Unpacking r-cran-gower (1.0.1-1) ... 363s Selecting previously unselected package r-cran-hardhat. 363s Preparing to unpack .../248-r-cran-hardhat_1.4.0+dfsg-1_all.deb ... 363s Unpacking r-cran-hardhat (1.4.0+dfsg-1) ... 363s Selecting previously unselected package r-cran-rpart. 363s Preparing to unpack .../249-r-cran-rpart_4.1.24-1_amd64.deb ... 363s Unpacking r-cran-rpart (4.1.24-1) ... 363s Selecting previously unselected package r-cran-nnet. 363s Preparing to unpack .../250-r-cran-nnet_7.3-20-1_amd64.deb ... 363s Unpacking r-cran-nnet (7.3-20-1) ... 363s Selecting previously unselected package r-cran-shape. 363s Preparing to unpack .../251-r-cran-shape_1.4.6.1-1_all.deb ... 363s Unpacking r-cran-shape (1.4.6.1-1) ... 363s Selecting previously unselected package r-cran-diagram. 363s Preparing to unpack .../252-r-cran-diagram_1.6.5-2_all.deb ... 363s Unpacking r-cran-diagram (1.6.5-2) ... 363s Selecting previously unselected package r-cran-kernsmooth. 363s Preparing to unpack .../253-r-cran-kernsmooth_2.23-26-1_amd64.deb ... 363s Unpacking r-cran-kernsmooth (2.23-26-1) ... 363s Selecting previously unselected package r-cran-globals. 363s Preparing to unpack .../254-r-cran-globals_0.16.3-1_all.deb ... 363s Unpacking r-cran-globals (0.16.3-1) ... 363s Selecting previously unselected package r-cran-listenv. 363s Preparing to unpack .../255-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 363s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 363s Selecting previously unselected package r-cran-parallelly. 363s Preparing to unpack .../256-r-cran-parallelly_1.38.0-1_amd64.deb ... 363s Unpacking r-cran-parallelly (1.38.0-1) ... 363s Selecting previously unselected package r-cran-future. 363s Preparing to unpack .../257-r-cran-future_1.34.0+dfsg-1_all.deb ... 363s Unpacking r-cran-future (1.34.0+dfsg-1) ... 363s Selecting previously unselected package r-cran-future.apply. 363s Preparing to unpack .../258-r-cran-future.apply_1.11.2+dfsg-1_all.deb ... 363s Unpacking r-cran-future.apply (1.11.2+dfsg-1) ... 363s Selecting previously unselected package r-cran-numderiv. 363s Preparing to unpack .../259-r-cran-numderiv_2016.8-1.1-3_all.deb ... 363s Unpacking r-cran-numderiv (2016.8-1.1-3) ... 363s Selecting previously unselected package r-cran-progressr. 363s Preparing to unpack .../260-r-cran-progressr_0.14.0-1_all.deb ... 363s Unpacking r-cran-progressr (0.14.0-1) ... 363s Selecting previously unselected package r-cran-squarem. 363s Preparing to unpack .../261-r-cran-squarem_2021.1-1_all.deb ... 363s Unpacking r-cran-squarem (2021.1-1) ... 363s Selecting previously unselected package r-cran-lava. 363s Preparing to unpack .../262-r-cran-lava_1.7.3+dfsg-1_all.deb ... 363s Unpacking r-cran-lava (1.7.3+dfsg-1) ... 363s Selecting previously unselected package r-cran-prodlim. 363s Preparing to unpack .../263-r-cran-prodlim_2024.06.25-1_amd64.deb ... 363s Unpacking r-cran-prodlim (2024.06.25-1) ... 363s Selecting previously unselected package r-cran-ipred. 363s Preparing to unpack .../264-r-cran-ipred_0.9-15-1_amd64.deb ... 363s Unpacking r-cran-ipred (0.9-15-1) ... 363s Selecting previously unselected package r-cran-timechange. 363s Preparing to unpack .../265-r-cran-timechange_0.3.0-1_amd64.deb ... 363s Unpacking r-cran-timechange (0.3.0-1) ... 363s Selecting previously unselected package r-cran-lubridate. 363s Preparing to unpack .../266-r-cran-lubridate_1.9.3+dfsg-1_amd64.deb ... 363s Unpacking r-cran-lubridate (1.9.3+dfsg-1) ... 363s Selecting previously unselected package r-cran-purrr. 363s Preparing to unpack .../267-r-cran-purrr_1.0.2-1_amd64.deb ... 363s Unpacking r-cran-purrr (1.0.2-1) ... 363s Selecting previously unselected package r-cran-stringi. 363s Preparing to unpack .../268-r-cran-stringi_1.8.4-1build1_amd64.deb ... 363s Unpacking r-cran-stringi (1.8.4-1build1) ... 364s Selecting previously unselected package r-cran-stringr. 364s Preparing to unpack .../269-r-cran-stringr_1.5.1-1_all.deb ... 364s Unpacking r-cran-stringr (1.5.1-1) ... 364s Selecting previously unselected package r-cran-tidyr. 364s Preparing to unpack .../270-r-cran-tidyr_1.3.1-1_amd64.deb ... 364s Unpacking r-cran-tidyr (1.3.1-1) ... 364s Selecting previously unselected package r-cran-timedate. 364s Preparing to unpack .../271-r-cran-timedate_4041.110-1_amd64.deb ... 364s Unpacking r-cran-timedate (4041.110-1) ... 364s Selecting previously unselected package r-cran-recipes. 364s Preparing to unpack .../272-r-cran-recipes_1.1.0+dfsg-1_all.deb ... 364s Unpacking r-cran-recipes (1.1.0+dfsg-1) ... 364s Selecting previously unselected package r-cran-reshape2. 364s Preparing to unpack .../273-r-cran-reshape2_1.4.4-2build1_amd64.deb ... 364s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 364s Selecting previously unselected package r-cran-caret. 364s Preparing to unpack .../274-r-cran-caret_6.0-94+dfsg-1_amd64.deb ... 364s Unpacking r-cran-caret (6.0-94+dfsg-1) ... 364s Selecting previously unselected package r-cran-catools. 364s Preparing to unpack .../275-r-cran-catools_1.18.2-1_amd64.deb ... 364s Unpacking r-cran-catools (1.18.2-1) ... 364s Selecting previously unselected package r-cran-cluster. 364s Preparing to unpack .../276-r-cran-cluster_2.1.8-1_amd64.deb ... 364s Unpacking r-cran-cluster (2.1.8-1) ... 364s Selecting previously unselected package r-cran-evaluate. 364s Preparing to unpack .../277-r-cran-evaluate_1.0.0-1_all.deb ... 364s Unpacking r-cran-evaluate (1.0.0-1) ... 364s Selecting previously unselected package r-cran-xfun. 364s Preparing to unpack .../278-r-cran-xfun_0.49+dfsg-1_amd64.deb ... 364s Unpacking r-cran-xfun (0.49+dfsg-1) ... 364s Selecting previously unselected package r-cran-highr. 364s Preparing to unpack .../279-r-cran-highr_0.11+dfsg-1_all.deb ... 364s Unpacking r-cran-highr (0.11+dfsg-1) ... 364s Selecting previously unselected package libjs-mathjax. 364s Preparing to unpack .../280-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 364s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 365s Selecting previously unselected package r-cran-knitr. 365s Preparing to unpack .../281-r-cran-knitr_1.49+dfsg-1_all.deb ... 365s Unpacking r-cran-knitr (1.49+dfsg-1) ... 365s Selecting previously unselected package r-cran-fontawesome. 365s Preparing to unpack .../282-r-cran-fontawesome_0.5.2-1_all.deb ... 365s Unpacking r-cran-fontawesome (0.5.2-1) ... 365s Selecting previously unselected package r-cran-tinytex. 365s Preparing to unpack .../283-r-cran-tinytex_0.53-1_all.deb ... 365s Unpacking r-cran-tinytex (0.53-1) ... 365s Selecting previously unselected package libjs-modernizr. 365s Preparing to unpack .../284-libjs-modernizr_3.13.0-0.1_all.deb ... 365s Unpacking libjs-modernizr (3.13.0-0.1) ... 365s Selecting previously unselected package r-cran-later. 365s Preparing to unpack .../285-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 365s Unpacking r-cran-later (1.3.2+dfsg-1) ... 365s Selecting previously unselected package r-cran-promises. 365s Preparing to unpack .../286-r-cran-promises_1.3.0+dfsg-1_amd64.deb ... 365s Unpacking r-cran-promises (1.3.0+dfsg-1) ... 365s Selecting previously unselected package r-cran-httpuv. 365s Preparing to unpack .../287-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 365s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 365s Selecting previously unselected package r-cran-xtable. 365s Preparing to unpack .../288-r-cran-xtable_1%3a1.8-4-2_all.deb ... 365s Unpacking r-cran-xtable (1:1.8-4-2) ... 365s Selecting previously unselected package r-cran-sourcetools. 365s Preparing to unpack .../289-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 365s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 365s Selecting previously unselected package r-cran-commonmark. 365s Preparing to unpack .../290-r-cran-commonmark_1.9.2-2_amd64.deb ... 365s Unpacking r-cran-commonmark (1.9.2-2) ... 365s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 365s Preparing to unpack .../291-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 365s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 365s Selecting previously unselected package r-cran-shiny. 365s Preparing to unpack .../292-r-cran-shiny_1.9.1+dfsg-1_all.deb ... 365s Unpacking r-cran-shiny (1.9.1+dfsg-1) ... 365s Selecting previously unselected package r-cran-rmarkdown. 365s Preparing to unpack .../293-r-cran-rmarkdown_2.28+dfsg-1_all.deb ... 365s Unpacking r-cran-rmarkdown (2.28+dfsg-1) ... 365s Selecting previously unselected package r-cran-htmlwidgets. 365s Preparing to unpack .../294-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 365s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 365s Selecting previously unselected package r-cran-miniui. 365s Preparing to unpack .../295-r-cran-miniui_0.1.1.1-3build1_all.deb ... 365s Unpacking r-cran-miniui (0.1.1.1-3build1) ... 366s Selecting previously unselected package r-cran-shinyjs. 366s Preparing to unpack .../296-r-cran-shinyjs_2.1.0-1_all.deb ... 366s Unpacking r-cran-shinyjs (2.1.0-1) ... 366s Selecting previously unselected package r-cran-colourpicker. 366s Preparing to unpack .../297-r-cran-colourpicker_1.3.0+dfsg-1_all.deb ... 366s Unpacking r-cran-colourpicker (1.3.0+dfsg-1) ... 366s Selecting previously unselected package r-cran-conquer. 366s Preparing to unpack .../298-r-cran-conquer_1.3.3-1_amd64.deb ... 366s Unpacking r-cran-conquer (1.3.3-1) ... 366s Selecting previously unselected package r-cran-cowplot. 366s Preparing to unpack .../299-r-cran-cowplot_1.1.3+dfsg-1_all.deb ... 366s Unpacking r-cran-cowplot (1.1.3+dfsg-1) ... 366s Selecting previously unselected package r-cran-lazyeval. 366s Preparing to unpack .../300-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 366s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 366s Selecting previously unselected package r-cran-crosstalk. 366s Preparing to unpack .../301-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 366s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 366s Selecting previously unselected package r-cran-deldir. 366s Preparing to unpack .../302-r-cran-deldir_2.0-4-1build1_amd64.deb ... 366s Unpacking r-cran-deldir (2.0-4-1build1) ... 366s Selecting previously unselected package r-cran-deoptimr. 366s Preparing to unpack .../303-r-cran-deoptimr_1.1-3-1-1_all.deb ... 366s Unpacking r-cran-deoptimr (1.1-3-1-1) ... 366s Selecting previously unselected package r-cran-desc. 366s Preparing to unpack .../304-r-cran-desc_1.4.3-1_all.deb ... 366s Unpacking r-cran-desc (1.4.3-1) ... 366s Selecting previously unselected package r-cran-diffobj. 366s Preparing to unpack .../305-r-cran-diffobj_0.3.5-1_amd64.deb ... 366s Unpacking r-cran-diffobj (0.3.5-1) ... 366s Selecting previously unselected package r-cran-dotcall64. 366s Preparing to unpack .../306-r-cran-dotcall64_1.1-1-1_amd64.deb ... 366s Unpacking r-cran-dotcall64 (1.1-1-1) ... 366s Selecting previously unselected package r-cran-sitmo. 366s Preparing to unpack .../307-r-cran-sitmo_2.0.2-1_amd64.deb ... 366s Unpacking r-cran-sitmo (2.0.2-1) ... 366s Selecting previously unselected package r-cran-dqrng. 366s Preparing to unpack .../308-r-cran-dqrng_0.3.2+dfsg-1_amd64.deb ... 366s Unpacking r-cran-dqrng (0.3.2+dfsg-1) ... 366s Selecting previously unselected package r-cran-fastdummies. 366s Preparing to unpack .../309-r-cran-fastdummies_1.7.4-1_all.deb ... 366s Unpacking r-cran-fastdummies (1.7.4-1) ... 366s Selecting previously unselected package r-cran-fitdistrplus. 366s Preparing to unpack .../310-r-cran-fitdistrplus_1.2-1-1_all.deb ... 366s Unpacking r-cran-fitdistrplus (1.2-1-1) ... 366s Selecting previously unselected package r-cran-fnn. 366s Preparing to unpack .../311-r-cran-fnn_1.1.4.1-1_amd64.deb ... 366s Unpacking r-cran-fnn (1.1.4.1-1) ... 366s Selecting previously unselected package r-cran-gtools. 366s Preparing to unpack .../312-r-cran-gtools_3.9.5-1_amd64.deb ... 366s Unpacking r-cran-gtools (3.9.5-1) ... 366s Selecting previously unselected package r-cran-gdata. 366s Preparing to unpack .../313-r-cran-gdata_3.0.1-1_all.deb ... 366s Unpacking r-cran-gdata (3.0.1-1) ... 366s Selecting previously unselected package r-cran-ggrepel. 366s Preparing to unpack .../314-r-cran-ggrepel_0.9.5-2_amd64.deb ... 366s Unpacking r-cran-ggrepel (0.9.5-2) ... 366s Selecting previously unselected package r-cran-ggridges. 366s Preparing to unpack .../315-r-cran-ggridges_0.5.6-1_all.deb ... 366s Unpacking r-cran-ggridges (0.5.6-1) ... 366s Selecting previously unselected package r-cran-goftest. 366s Preparing to unpack .../316-r-cran-goftest_1.2-3-1_amd64.deb ... 366s Unpacking r-cran-goftest (1.2-3-1) ... 366s Selecting previously unselected package r-cran-gplots. 366s Preparing to unpack .../317-r-cran-gplots_3.2.0-1_all.deb ... 366s Unpacking r-cran-gplots (3.2.0-1) ... 366s Selecting previously unselected package r-cran-gridextra. 367s Preparing to unpack .../318-r-cran-gridextra_2.3-3build1_all.deb ... 367s Unpacking r-cran-gridextra (2.3-3build1) ... 367s Selecting previously unselected package r-cran-rprojroot. 367s Preparing to unpack .../319-r-cran-rprojroot_2.0.4-1_all.deb ... 367s Unpacking r-cran-rprojroot (2.0.4-1) ... 367s Selecting previously unselected package r-cran-here. 367s Preparing to unpack .../320-r-cran-here_1.0.1-2_all.deb ... 367s Unpacking r-cran-here (1.0.1-2) ... 367s Selecting previously unselected package r-cran-ica. 367s Preparing to unpack .../321-r-cran-ica_1.0-3-1_all.deb ... 367s Unpacking r-cran-ica (1.0-3-1) ... 367s Selecting previously unselected package r-cran-igraph. 367s Preparing to unpack .../322-r-cran-igraph_2.0.3-1_amd64.deb ... 367s Unpacking r-cran-igraph (2.0.3-1) ... 367s Selecting previously unselected package r-cran-irlba. 367s Preparing to unpack .../323-r-cran-irlba_2.3.5.1-4_amd64.deb ... 367s Unpacking r-cran-irlba (2.3.5.1-4) ... 367s Selecting previously unselected package r-cran-kernlab. 367s Preparing to unpack .../324-r-cran-kernlab_0.9-33-1_amd64.deb ... 367s Unpacking r-cran-kernlab (0.9-33-1) ... 367s Selecting previously unselected package r-cran-rcpptoml. 367s Preparing to unpack .../325-r-cran-rcpptoml_0.2.2+dfsg-1_amd64.deb ... 367s Unpacking r-cran-rcpptoml (0.2.2+dfsg-1) ... 367s Selecting previously unselected package r-cran-png. 367s Preparing to unpack .../326-r-cran-png_0.1-8-1build2_amd64.deb ... 367s Unpacking r-cran-png (0.1-8-1build2) ... 367s Selecting previously unselected package r-cran-reticulate. 367s Preparing to unpack .../327-r-cran-reticulate_1.39.0+dfsg-1_amd64.deb ... 367s Unpacking r-cran-reticulate (1.39.0+dfsg-1) ... 367s Selecting previously unselected package r-cran-leiden. 367s Preparing to unpack .../328-r-cran-leiden_0.4.3.1+dfsg-1_all.deb ... 367s Unpacking r-cran-leiden (0.4.3.1+dfsg-1) ... 367s Selecting previously unselected package r-cran-zoo. 367s Preparing to unpack .../329-r-cran-zoo_1.8-12-2_amd64.deb ... 367s Unpacking r-cran-zoo (1.8-12-2) ... 367s Selecting previously unselected package r-cran-lmtest. 367s Preparing to unpack .../330-r-cran-lmtest_0.9.40-1_amd64.deb ... 367s Unpacking r-cran-lmtest (0.9.40-1) ... 367s Selecting previously unselected package r-cran-mathjaxr. 367s Preparing to unpack .../331-r-cran-mathjaxr_1.6-0-1_all.deb ... 367s Unpacking r-cran-mathjaxr (1.6-0-1) ... 367s Selecting previously unselected package r-cran-matrixmodels. 367s Preparing to unpack .../332-r-cran-matrixmodels_0.5-3-1_all.deb ... 367s Unpacking r-cran-matrixmodels (0.5-3-1) ... 367s Selecting previously unselected package r-cran-rbibutils. 367s Preparing to unpack .../333-r-cran-rbibutils_2.3-1_amd64.deb ... 367s Unpacking r-cran-rbibutils (2.3-1) ... 367s Selecting previously unselected package r-cran-rdpack. 367s Preparing to unpack .../334-r-cran-rdpack_2.6.2-1_all.deb ... 367s Unpacking r-cran-rdpack (2.6.2-1) ... 367s Selecting previously unselected package r-cran-mnormt. 367s Preparing to unpack .../335-r-cran-mnormt_2.1.1-2_amd64.deb ... 367s Unpacking r-cran-mnormt (2.1.1-2) ... 367s Selecting previously unselected package r-cran-sparsem. 367s Preparing to unpack .../336-r-cran-sparsem_1.84-2-1_amd64.deb ... 367s Unpacking r-cran-sparsem (1.84-2-1) ... 368s Selecting previously unselected package r-cran-quantreg. 368s Preparing to unpack .../337-r-cran-quantreg_5.99.1-1_amd64.deb ... 368s Unpacking r-cran-quantreg (5.99.1-1) ... 368s Selecting previously unselected package r-cran-sn. 368s Preparing to unpack .../338-r-cran-sn_2.1.1-2_all.deb ... 368s Unpacking r-cran-sn (2.1.1-2) ... 368s Selecting previously unselected package r-cran-mvtnorm. 368s Preparing to unpack .../339-r-cran-mvtnorm_1.3-3-1_amd64.deb ... 368s Unpacking r-cran-mvtnorm (1.3-3-1) ... 368s Selecting previously unselected package r-cran-tfisher. 368s Preparing to unpack .../340-r-cran-tfisher_0.2.0-3_all.deb ... 368s Unpacking r-cran-tfisher (0.2.0-3) ... 368s Selecting previously unselected package r-cran-plotrix. 368s Preparing to unpack .../341-r-cran-plotrix_3.8-4-1_all.deb ... 368s Unpacking r-cran-plotrix (3.8-4-1) ... 368s Selecting previously unselected package r-cran-th.data. 368s Preparing to unpack .../342-r-cran-th.data_1.1-2-2_all.deb ... 368s Unpacking r-cran-th.data (1.1-2-2) ... 368s Selecting previously unselected package r-cran-sandwich. 368s Preparing to unpack .../343-r-cran-sandwich_3.1-1-1_all.deb ... 368s Unpacking r-cran-sandwich (3.1-1-1) ... 368s Selecting previously unselected package r-cran-multcomp. 368s Preparing to unpack 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previously unselected package r-cran-segmented. 368s Preparing to unpack .../350-r-cran-segmented_2.1-3-1_all.deb ... 368s Unpacking r-cran-segmented (2.1-3-1) ... 368s Selecting previously unselected package r-cran-mixtools. 368s Preparing to unpack .../351-r-cran-mixtools_2.0.0-1_amd64.deb ... 368s Unpacking r-cran-mixtools (2.0.0-1) ... 368s Selecting previously unselected package r-cran-patchwork. 368s Preparing to unpack .../352-r-cran-patchwork_1.3.0-1_all.deb ... 368s Unpacking r-cran-patchwork (1.3.0-1) ... 369s Selecting previously unselected package r-cran-pbapply. 369s Preparing to unpack .../353-r-cran-pbapply_1.7-2-1_all.deb ... 369s Unpacking r-cran-pbapply (1.7-2-1) ... 369s Selecting previously unselected package r-cran-pkgbuild. 369s Preparing to unpack .../354-r-cran-pkgbuild_1.4.4-1_all.deb ... 369s Unpacking r-cran-pkgbuild (1.4.4-1) ... 369s Selecting previously unselected package r-cran-pkgload. 369s Preparing to unpack .../355-r-cran-pkgload_1.4.0-1_all.deb ... 369s Unpacking r-cran-pkgload (1.4.0-1) ... 369s Selecting previously unselected package r-cran-polyclip. 369s Preparing to unpack .../356-r-cran-polyclip_1.10-7-1_amd64.deb ... 369s Unpacking r-cran-polyclip (1.10-7-1) ... 369s Selecting previously unselected package r-cran-praise. 369s Preparing to unpack .../357-r-cran-praise_1.0.0-4build1_all.deb ... 369s Unpacking r-cran-praise (1.0.0-4build1) ... 369s Selecting previously unselected package r-cran-r.methodss3. 369s Preparing to unpack .../358-r-cran-r.methodss3_1.8.2-1_all.deb ... 369s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 369s Selecting previously unselected package r-cran-r.oo. 369s Preparing to unpack .../359-r-cran-r.oo_1.26.0-1_all.deb ... 369s Unpacking r-cran-r.oo (1.26.0-1) ... 369s Selecting previously unselected package r-cran-r.utils. 369s Preparing to unpack .../360-r-cran-r.utils_2.12.3-1_all.deb ... 369s Unpacking r-cran-r.utils (2.12.3-1) ... 369s Selecting previously unselected package r-cran-rann. 369s 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file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 374s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 374s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 374s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 374s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 374s Setting up r-cran-reshape2 (1.4.4-2build1) ... 374s Setting up r-cran-rsvd (1.0.5-1) ... 374s Setting up r-cran-future.apply (1.11.2+dfsg-1) ... 374s Setting up r-cran-timechange (0.3.0-1) ... 374s Setting up r-cran-th.data (1.1-2-2) ... 374s Setting up r-cran-httr (1.4.7+dfsg-1) ... 374s Setting up r-cran-gridextra (2.3-3build1) ... 374s Setting up r-cran-scales (1.3.0-1) ... 374s Setting up r-cran-memoise (2.0.1-1) ... 374s Setting up r-cran-lava (1.7.3+dfsg-1) ... 374s Setting up r-cran-promises (1.3.0+dfsg-1) ... 374s Setting up r-cran-purrr 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up r-bioc-delayedarray (0.32.0+dfsg-2) ... 374s Setting up r-cran-cowplot (1.1.3+dfsg-1) ... 374s Setting up r-cran-sctransform (0.4.1-1) ... 374s Setting up r-cran-patchwork (1.3.0-1) ... 374s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 374s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 374s Setting up r-cran-caret (6.0-94+dfsg-1) ... 374s Setting up r-cran-shiny (1.9.1+dfsg-1) ... 374s Setting up r-cran-shinyjs (2.1.0-1) ... 374s Setting up r-cran-miniui (0.1.1.1-3build1) ... 374s Setting up r-cran-rmarkdown (2.28+dfsg-1) ... 374s Setting up r-cran-conquer (1.3.3-1) ... 374s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 374s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 374s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 374s Setting up r-cran-quantreg (5.99.1-1) ... 374s Setting up r-cran-sn (2.1.1-2) ... 374s Setting up r-bioc-deseq2 (1.46.0+dfsg-2) ... 374s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 374s Setting up r-cran-colourpicker (1.3.0+dfsg-1) ... 374s Setting up r-cran-tfisher (0.2.0-3) ... 374s Setting up r-bioc-genomicalignments (1.42.0-2) ... 374s Setting up r-cran-metap (1.11-1) ... 374s Setting up r-bioc-rtracklayer (1.66.0-2) ... 374s Setting up r-cran-plotly (4.10.4+dfsg-2) ... 374s Setting up r-cran-mixtools (2.0.0-1) ... 374s Setting up r-cran-seurat (5.1.0-1) ... 374s Processing triggers for man-db (2.13.0-1) ... 375s Processing triggers for install-info (7.1.1-1) ... 376s Processing triggers for libc-bin (2.40-4ubuntu1) ... 378s autopkgtest [16:12:37]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 378s autopkgtest [16:12:37]: test pkg-r-autopkgtest: [----------------------- 379s Test: Try to load the R library Seurat 379s 379s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 379s Copyright (C) 2024 The R Foundation for Statistical Computing 379s Platform: x86_64-pc-linux-gnu 379s 379s R is free software and comes with ABSOLUTELY NO WARRANTY. 379s You are welcome to redistribute it under certain conditions. 379s Type 'license()' or 'licence()' for distribution details. 379s 379s R is a collaborative project with many contributors. 379s Type 'contributors()' for more information and 379s 'citation()' on how to cite R or R packages in publications. 379s 379s Type 'demo()' for some demos, 'help()' for on-line help, or 379s 'help.start()' for an HTML browser interface to help. 379s Type 'q()' to quit R. 379s 379s > library('Seurat') 379s Loading required package: SeuratObject 379s Loading required package: sp 381s ‘SeuratObject’ was built under R 4.4.1 but the current version is 381s 4.4.2; it is recomended that you reinstall ‘SeuratObject’ as the ABI 381s for R may have changed 381s ‘SeuratObject’ was built with package ‘Matrix’ 1.7.0 but the current 381s version is 1.7.1; it is recomended that you reinstall ‘SeuratObject’ as 381s the ABI for ‘Matrix’ may have changed 381s 381s Attaching package: ‘SeuratObject’ 381s 381s The following objects are masked from ‘package:base’: 381s 381s intersect, t 381s 383s > 383s > 383s Other tests are currently unsupported! 383s They will be progressively added. 383s autopkgtest [16:12:42]: test pkg-r-autopkgtest: -----------------------] 384s pkg-r-autopkgtest PASS 384s autopkgtest [16:12:43]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 384s autopkgtest [16:12:43]: @@@@@@@@@@@@@@@@@@@@ summary 384s run-unit-test PASS 384s pkg-r-autopkgtest PASS 389s nova [W] Skipping flock for amd64 389s Creating nova instance adt-plucky-amd64-r-cran-seurat-20250117-160619-juju-7f2275-prod-proposed-migration-environment-20-74d4e8c0-e9f3-49ae-8a60-0e4bae3bad89 from image adt/ubuntu-plucky-amd64-server-20250117.img (UUID 8f35863a-398a-4b7d-9594-544c7b7656c3)... 389s nova [W] Timed out waiting for a524df2b-fdce-4260-b445-17e4635d7e01 to get deleted. 389s nova [W] Skipping flock for amd64 389s Creating nova instance adt-plucky-amd64-r-cran-seurat-20250117-160619-juju-7f2275-prod-proposed-migration-environment-20-74d4e8c0-e9f3-49ae-8a60-0e4bae3bad89 from image adt/ubuntu-plucky-amd64-server-20250117.img (UUID 8f35863a-398a-4b7d-9594-544c7b7656c3)... 389s nova [W] Timed out waiting for aad15641-51c5-4062-bf73-35b659565c5d to get deleted.