0s autopkgtest [15:08:04]: starting date and time: 2025-01-17 15:08:04+0000 0s autopkgtest [15:08:04]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:08:04]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.5kx5q4pi/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-iranges,src:r-bioc-biocgenerics,src:r-bioc-s4vectors,src:r-cran-seurat --apt-upgrade r-cran-seurat --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-iranges/2.40.1-2 r-bioc-biocgenerics/0.52.0-2 r-bioc-s4vectors/0.44.0+dfsg-2 r-cran-seurat/5.1.0-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-12.secgroup --name adt-plucky-amd64-r-cran-seurat-20250117-150803-juju-7f2275-prod-proposed-migration-environment-15-cc6c378e-9935-468b-b05f-2214077c7b29 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 145s autopkgtest [15:10:29]: testbed dpkg architecture: amd64 145s autopkgtest [15:10:29]: testbed apt version: 2.9.18 146s autopkgtest [15:10:30]: @@@@@@@@@@@@@@@@@@@@ test bed setup 146s autopkgtest [15:10:30]: testbed release detected to be: None 147s autopkgtest [15:10:31]: updating testbed package index (apt update) 147s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 147s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 147s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 147s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 147s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.1 kB] 147s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 147s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [868 kB] 148s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [178 kB] 148s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [228 kB] 148s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [331 kB] 148s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2408 B] 148s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [40.1 kB] 148s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [1095 kB] 148s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [468 kB] 148s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [4444 B] 148s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [24.9 kB] 148s Fetched 3337 kB in 1s (3381 kB/s) 149s Reading package lists... 149s Reading package lists... 150s Building dependency tree... 150s Reading state information... 150s Calculating upgrade... 150s The following packages will be upgraded: 150s libgudev-1.0-0 usb.ids 150s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 150s Need to get 239 kB of archives. 150s After this operation, 0 B of additional disk space will be used. 150s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 usb.ids all 2025.01.14-1 [223 kB] 150s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libgudev-1.0-0 amd64 1:238-6 [15.8 kB] 151s Fetched 239 kB in 0s (492 kB/s) 151s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 151s Preparing to unpack .../usb.ids_2025.01.14-1_all.deb ... 151s Unpacking usb.ids (2025.01.14-1) over (2024.12.04-1) ... 151s Preparing to unpack .../libgudev-1.0-0_1%3a238-6_amd64.deb ... 151s Unpacking libgudev-1.0-0:amd64 (1:238-6) over (1:238-5ubuntu1) ... 151s Setting up usb.ids (2025.01.14-1) ... 151s Setting up libgudev-1.0-0:amd64 (1:238-6) ... 151s Processing triggers for libc-bin (2.40-4ubuntu1) ... 151s Reading package lists... 151s Building dependency tree... 151s Reading state information... 151s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 151s autopkgtest [15:10:35]: upgrading testbed (apt dist-upgrade and autopurge) 152s Reading package lists... 152s Building dependency tree... 152s Reading state information... 152s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 152s Starting 2 pkgProblemResolver with broken count: 0 152s Done 152s Entering ResolveByKeep 152s 153s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 153s Reading package lists... 153s Building dependency tree... 153s Reading state information... 153s Starting pkgProblemResolver with broken count: 0 153s Starting 2 pkgProblemResolver with broken count: 0 153s Done 154s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 156s autopkgtest [15:10:40]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 156s autopkgtest [15:10:40]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-seurat 158s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/universe r-cran-seurat 5.1.0-1 (dsc) [3385 B] 158s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe r-cran-seurat 5.1.0-1 (tar) [2064 kB] 158s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe r-cran-seurat 5.1.0-1 (diff) [4724 B] 158s gpgv: Signature made Tue Sep 10 23:46:06 2024 UTC 158s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 158s gpgv: issuer "plessy@debian.org" 158s gpgv: Can't check signature: No public key 158s dpkg-source: warning: cannot verify inline signature for ./r-cran-seurat_5.1.0-1.dsc: no acceptable signature found 158s autopkgtest [15:10:42]: testing package r-cran-seurat version 5.1.0-1 159s autopkgtest [15:10:43]: build not needed 162s autopkgtest [15:10:46]: test run-unit-test: preparing testbed 162s Reading package lists... 162s Building dependency tree... 162s Reading state information... 162s Starting pkgProblemResolver with broken count: 11 162s Starting 2 pkgProblemResolver with broken count: 11 162s Investigating (0) r-bioc-genomeinfodb:amd64 < none -> 1.40.1+dfsg-1 @un puN Ib > 162s Broken r-bioc-genomeinfodb:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 162s Considering r-bioc-biocgenerics:amd64 55 as a solution to r-bioc-genomeinfodb:amd64 13 162s Re-Instated r-bioc-biocgenerics:amd64 162s Broken r-bioc-genomeinfodb:amd64 Depends on r-bioc-ucsc.utils:amd64 < none | 1.0.0+ds-2 @un uH > (> 1.0.0+ds-1) 162s Considering r-bioc-ucsc.utils:amd64 0 as a solution to r-bioc-genomeinfodb:amd64 13 162s Reinst Failed because of protected r-bioc-biocgenerics:amd64 162s Considering r-bioc-ucsc.utils:amd64 0 as a solution to r-bioc-genomeinfodb:amd64 13 162s Broken r-bioc-genomeinfodb:amd64 Depends on r-bioc-genomeinfodbdata:amd64 < none | 1.2.13-2 @un uH > (>= 1.2.12) 162s Considering r-bioc-genomeinfodbdata:amd64 0 as a solution to r-bioc-genomeinfodb:amd64 13 162s Re-Instated r-bioc-genomeinfodbdata:amd64 162s Investigating (0) r-bioc-genomicranges:amd64 < none -> 1.56.2+dfsg-1 @un puN Ib > 162s Broken r-bioc-genomicranges:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 162s Considering r-bioc-biocgenerics:amd64 13 as a solution to r-bioc-genomicranges:amd64 11 162s Broken r-bioc-genomicranges:amd64 Depends on r-bioc-xvector:amd64 < none | 0.44.0-1 @un uH > (>= 0.29.2) 162s Considering r-bioc-xvector:amd64 0 as a solution to r-bioc-genomicranges:amd64 11 162s Reinst Failed because of protected r-bioc-biocgenerics:amd64 162s Considering r-bioc-xvector:amd64 0 as a solution to r-bioc-genomicranges:amd64 11 162s Investigating (0) r-bioc-biobase:amd64 < none -> 2.64.0-4 @un puN Ib > 162s Broken r-bioc-biobase:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 162s Considering r-bioc-biocgenerics:amd64 13 as a solution to r-bioc-biobase:amd64 10 162s Investigating (0) r-bioc-delayedarray:amd64 < none -> 0.30.1+dfsg-1 @un puN Ib > 162s Broken r-bioc-delayedarray:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 162s Considering r-bioc-biocgenerics:amd64 13 as a solution to r-bioc-delayedarray:amd64 7 162s Broken r-bioc-delayedarray:amd64 Depends on r-bioc-matrixgenerics:amd64 < none | 1.16.0-2 @un uH > (>= 1.16.0) 162s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-delayedarray:amd64 7 162s Reinst Failed because of protected r-bioc-biocgenerics:amd64 162s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-delayedarray:amd64 7 162s Broken r-bioc-delayedarray:amd64 Depends on r-bioc-s4arrays:amd64 < none | 1.4.1+dfsg-1 @un uH > (>= 1.4.1) 162s Considering r-bioc-s4arrays:amd64 0 as a solution to r-bioc-delayedarray:amd64 7 162s Reinst Failed because of protected r-bioc-biocgenerics:amd64 162s Considering r-bioc-s4arrays:amd64 0 as a solution to r-bioc-delayedarray:amd64 7 162s Broken r-bioc-delayedarray:amd64 Depends on r-bioc-sparsearray:amd64 < none | 1.4.8+dfsg-1 @un uH > (>= 1.4.8) 162s Considering r-bioc-sparsearray:amd64 0 as a solution to r-bioc-delayedarray:amd64 7 162s Reinst Failed because of protected r-bioc-biocgenerics:amd64 162s Considering r-bioc-sparsearray:amd64 0 as a solution to r-bioc-delayedarray:amd64 7 162s Investigating (0) r-bioc-summarizedexperiment:amd64 < none -> 1.34.0+dfsg-1 @un puN Ib > 162s Broken r-bioc-summarizedexperiment:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 162s Considering r-bioc-biocgenerics:amd64 13 as a solution to r-bioc-summarizedexperiment:amd64 5 162s Broken r-bioc-summarizedexperiment:amd64 Depends on r-bioc-matrixgenerics:amd64 < none | 1.16.0-2 @un uH > (>= 1.16.0) 162s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-summarizedexperiment:amd64 5 162s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-summarizedexperiment:amd64 5 162s Broken r-bioc-summarizedexperiment:amd64 Depends on r-bioc-s4arrays:amd64 < none | 1.4.1+dfsg-1 @un uH > (>= 1.4.1) 162s Considering r-bioc-s4arrays:amd64 0 as a solution to r-bioc-summarizedexperiment:amd64 5 162s Considering r-bioc-s4arrays:amd64 0 as a solution to r-bioc-summarizedexperiment:amd64 5 162s Investigating (0) r-bioc-limma:amd64 < none -> 3.60.6+dfsg-1 @un puN Ib > 162s Broken r-bioc-limma:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 162s Considering r-bioc-biocgenerics:amd64 13 as a solution to r-bioc-limma:amd64 3 162s Broken r-bioc-limma:amd64 Depends on r-cran-statmod:amd64 < none | 1.5.0-1 @un uH > 162s Considering r-cran-statmod:amd64 1 as a solution to r-bioc-limma:amd64 3 162s Re-Instated r-cran-statmod:amd64 162s Investigating (0) r-bioc-rtracklayer:amd64 < none -> 1.64.0-1 @un puN Ib > 162s Broken r-bioc-rtracklayer:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 162s Considering r-bioc-biocgenerics:amd64 13 as a solution to r-bioc-rtracklayer:amd64 1 162s Broken r-bioc-rtracklayer:amd64 Depends on r-cran-xml:amd64 < none | 3.99-0.18-1 @un uH > (>= 1.98-0) 162s Considering r-cran-xml:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 162s Re-Instated r-cran-xml:amd64 162s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-xvector:amd64 < none | 0.44.0-1 @un uH > (>= 0.44.0) 162s Considering r-bioc-xvector:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 162s Considering r-bioc-xvector:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 162s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-biostrings:amd64 < none | 2.72.1+dfsg-1 @un uH > (>= 2.72.1) 162s Considering r-bioc-biostrings:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 162s Reinst Failed because of protected r-bioc-biocgenerics:amd64 162s Considering r-bioc-biostrings:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 162s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-zlibbioc:amd64 < none | 1.50.0+dfsg-2 @un uH > (>= 1.50.0) 162s Considering r-bioc-zlibbioc:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 162s Reinst Failed because of protected r-bioc-biocgenerics:amd64 162s Considering r-bioc-zlibbioc:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 162s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-rsamtools:amd64 < none | 2.20.0+dfsg-1 @un uH > (>= 2.20.0) 162s Considering r-bioc-rsamtools:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 162s Reinst Failed because of protected r-bioc-biocgenerics:amd64 162s Considering r-bioc-rsamtools:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 162s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-genomicalignments:amd64 < none | 1.40.0-1 @un uH > (>= 1.40.0) 162s Considering r-bioc-genomicalignments:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 162s Reinst Failed because of protected r-bioc-biocgenerics:amd64 162s Considering r-bioc-genomicalignments:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 162s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-biocio:amd64 < none | 1.14.0+dfsg-1 @un uH > (>= 1.14.0) 162s Considering r-bioc-biocio:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 162s Reinst Failed because of protected r-bioc-biocgenerics:amd64 162s Considering r-bioc-biocio:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 162s Broken r-bioc-rtracklayer:amd64 Depends on r-cran-restfulr:amd64 < none | 0.0.15-1 @un uH > (>= 0.0.13) 162s Considering r-cran-restfulr:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 162s Re-Instated r-cran-rcurl:amd64 162s Re-Instated r-cran-rjson:amd64 162s Re-Instated r-cran-restfulr:amd64 162s Investigating (0) r-bioc-deseq2:amd64 < none -> 1.44.0+dfsg-1 @un puN Ib > 162s Broken r-bioc-deseq2:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 162s Considering r-bioc-biocgenerics:amd64 13 as a solution to r-bioc-deseq2:amd64 1 162s Broken r-bioc-deseq2:amd64 Depends on r-bioc-biocparallel:amd64 < none | 1.38.0-2 @un uH > (>= 1.38.0) 162s Considering r-bioc-biocparallel:amd64 0 as a solution to r-bioc-deseq2:amd64 1 162s Reinst Failed because of protected r-bioc-biocgenerics:amd64 162s Considering r-bioc-biocparallel:amd64 0 as a solution to r-bioc-deseq2:amd64 1 162s Broken r-bioc-deseq2:amd64 Depends on r-cran-locfit:amd64 < none | 1.5-9.10-1 @un uH > 162s Considering r-cran-locfit:amd64 2 as a solution to r-bioc-deseq2:amd64 1 162s Re-Instated r-cran-locfit:amd64 162s Broken r-bioc-deseq2:amd64 Depends on r-bioc-matrixgenerics:amd64 < none | 1.16.0-2 @un uH > (>= 1.16.0) 162s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-deseq2:amd64 1 162s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-deseq2:amd64 1 162s Investigating (0) r-bioc-singlecellexperiment:amd64 < none -> 1.26.0+ds-1 @un puN Ib > 162s Broken r-bioc-singlecellexperiment:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 162s Considering r-bioc-biocgenerics:amd64 13 as a solution to r-bioc-singlecellexperiment:amd64 1 162s Investigating (0) r-bioc-monocle:amd64 < none -> 2.32.0-1 @un puN Ib > 162s Broken r-bioc-monocle:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 162s Considering r-bioc-biocgenerics:amd64 13 as a solution to r-bioc-monocle:amd64 1 162s Broken r-bioc-monocle:amd64 Depends on r-cran-ddrtree:amd64 < none | 0.1.5-2 @un uH > (>= 0.1.4) 162s Considering r-cran-ddrtree:amd64 0 as a solution to r-bioc-monocle:amd64 1 162s Re-Instated r-cran-ddrtree:amd64 162s Broken r-bioc-monocle:amd64 Depends on r-bioc-hsmmsinglecell:amd64 < none | 1.24.0-1 @un uH > (>= 0.101.5) 162s Considering r-bioc-hsmmsinglecell:amd64 0 as a solution to r-bioc-monocle:amd64 1 162s Reinst Failed because of protected r-bioc-biocgenerics:amd64 162s Considering r-bioc-hsmmsinglecell:amd64 0 as a solution to r-bioc-monocle:amd64 1 162s Broken r-bioc-monocle:amd64 Depends on r-cran-combinat:amd64 < none | 0.0-8-7build1 @un uH > 162s Considering r-cran-combinat:amd64 1 as a solution to r-bioc-monocle:amd64 1 162s Re-Instated r-cran-combinat:amd64 162s Broken r-bioc-monocle:amd64 Depends on r-cran-fastica:amd64 < none | 1.2-7-1 @un uH > 162s Considering r-cran-fastica:amd64 3 as a solution to r-bioc-monocle:amd64 1 162s Re-Instated r-cran-fastica:amd64 162s Broken r-bioc-monocle:amd64 Depends on r-cran-leidenbase:amd64 < none | 0.1.27-1 @un uH > (>= 0.1.9) 162s Considering r-cran-leidenbase:amd64 0 as a solution to r-bioc-monocle:amd64 1 162s Re-Instated r-cran-leidenbase:amd64 162s Broken r-bioc-monocle:amd64 Depends on r-cran-pheatmap:amd64 < none | 1.0.12-2build1 @un uH > 162s Considering r-cran-pheatmap:amd64 1 as a solution to r-bioc-monocle:amd64 1 162s Re-Instated r-cran-pheatmap:amd64 162s Broken r-bioc-monocle:amd64 Depends on r-cran-slam:amd64 < none | 0.1-55-1 @un uH > 162s Considering r-cran-slam:amd64 1 as a solution to r-bioc-monocle:amd64 1 162s Re-Instated r-cran-slam:amd64 162s Broken r-bioc-monocle:amd64 Depends on r-cran-viridis:amd64 < none | 0.6.5-1 @un uH > 162s Considering r-cran-viridis:amd64 2 as a solution to r-bioc-monocle:amd64 1 162s Re-Instated r-cran-viridis:amd64 162s Broken r-bioc-monocle:amd64 Depends on r-bioc-biocviews:amd64 < none | 1.72.0-1 @un uH > 162s Considering r-bioc-biocviews:amd64 1 as a solution to r-bioc-monocle:amd64 1 162s Reinst Failed because of protected r-bioc-biocgenerics:amd64 162s Considering r-bioc-biocviews:amd64 1 as a solution to r-bioc-monocle:amd64 1 162s Investigating (0) r-bioc-multtest:amd64 < none -> 2.60.0-1 @un puN Ib > 162s Broken r-bioc-multtest:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 162s Considering r-bioc-biocgenerics:amd64 13 as a solution to r-bioc-multtest:amd64 0 162s Done 162s Some packages could not be installed. This may mean that you have 162s requested an impossible situation or if you are using the unstable 162s distribution that some required packages have not yet been created 162s or been moved out of Incoming. 162s The following information may help to resolve the situation: 162s 162s The following packages have unmet dependencies: 162s r-bioc-biobase : Depends: r-api-bioc-3.19 162s r-bioc-delayedarray : Depends: r-api-bioc-3.19 162s Depends: r-bioc-matrixgenerics (>= 1.16.0) but it is not going to be installed 162s Depends: r-bioc-s4arrays (>= 1.4.1) but it is not going to be installed 162s Depends: r-bioc-sparsearray (>= 1.4.8) but it is not going to be installed 162s r-bioc-deseq2 : Depends: r-api-bioc-3.19 162s Depends: r-bioc-biocparallel (>= 1.38.0) but it is not going to be installed 162s Depends: r-bioc-matrixgenerics (>= 1.16.0) but it is not going to be installed 162s r-bioc-genomeinfodb : Depends: r-api-bioc-3.19 162s Depends: r-bioc-ucsc.utils (> 1.0.0+ds-1) but it is not going to be installed 162s r-bioc-genomicranges : Depends: r-api-bioc-3.19 162s Depends: r-bioc-xvector (>= 0.29.2) but it is not going to be installed 162s r-bioc-limma : Depends: r-api-bioc-3.19 162s r-bioc-monocle : Depends: r-api-bioc-3.19 162s Depends: r-bioc-hsmmsinglecell (>= 0.101.5) but it is not going to be installed 162s Depends: r-bioc-biocviews but it is not going to be installed 162s r-bioc-multtest : Depends: r-api-bioc-3.19 162s r-bioc-rtracklayer : Depends: r-api-bioc-3.19 162s Depends: r-bioc-xvector (>= 0.44.0) but it is not going to be installed 162s Depends: r-bioc-biostrings (>= 2.72.1) but it is not going to be installed 162s Depends: r-bioc-zlibbioc (>= 1.50.0) but it is not going to be installed 162s Depends: r-bioc-rsamtools (>= 2.20.0) but it is not going to be installed 162s Depends: r-bioc-genomicalignments (>= 1.40.0) but it is not going to be installed 162s Depends: r-bioc-biocio (>= 1.14.0) but it is not going to be installed 162s r-bioc-singlecellexperiment : Depends: r-api-bioc-3.19 162s r-bioc-summarizedexperiment : Depends: r-api-bioc-3.19 162s Depends: r-bioc-matrixgenerics (>= 1.16.0) but it is not going to be installed 162s Depends: r-bioc-s4arrays (>= 1.4.1) but it is not going to be installed 162s E: Unable to correct problems, you have held broken packages. 162s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed 163s Reading package lists... 163s Building dependency tree... 163s Reading state information... 163s Starting pkgProblemResolver with broken count: 0 163s Starting 2 pkgProblemResolver with broken count: 0 163s Done 164s The following NEW packages will be installed: 164s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 164s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax 164s javascript-common libaec0 libamd3 libasan8 libblas3 libboost-dev 164s libboost1.83-dev libcairo2 libcolamd3 libdatrie1 libdeflate0 164s libfftw3-double3 libfontconfig1 libgcc-14-dev libgfortran5 libglpk40 164s libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 164s libhwasan0 libice6 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap 164s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 164s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 164s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 164s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack3 164s liblerc4 liblsan0 libltdl7 liblua5.4-0 libpango-1.0-0 libpangocairo-1.0-0 164s libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libquadmath0 164s libsharpyuv0 libsm6 libstdc++-14-dev libsuitesparseconfig7 libsz2 libtcl8.6 164s libthai-data libthai0 libtiff6 libtk8.6 libtsan2 libubsan1 libwebp7 164s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 littler 164s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 164s r-base-core r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio 164s r-bioc-biocparallel r-bioc-biocviews r-bioc-biostrings r-bioc-delayedarray 164s r-bioc-deseq2 r-bioc-genomeinfodb r-bioc-genomeinfodbdata 164s r-bioc-genomicalignments r-bioc-genomicranges r-bioc-graph 164s r-bioc-hsmmsinglecell r-bioc-iranges r-bioc-limma r-bioc-matrixgenerics 164s r-bioc-monocle r-bioc-multtest r-bioc-rbgl r-bioc-rhtslib r-bioc-rsamtools 164s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 164s r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-summarizedexperiment 164s r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-ape 164s r-cran-askpass r-cran-base64enc r-cran-beeswarm r-cran-bh r-cran-biocmanager 164s r-cran-bit r-cran-bit64 r-cran-bitops r-cran-brio r-cran-bslib r-cran-cachem 164s r-cran-cairo r-cran-callr r-cran-caret r-cran-catools r-cran-class 164s r-cran-cli r-cran-clock r-cran-cluster r-cran-codetools r-cran-colorspace 164s r-cran-colourpicker r-cran-combinat r-cran-commonmark r-cran-conquer 164s r-cran-cowplot r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl 164s r-cran-data.table r-cran-ddrtree r-cran-deldir r-cran-deoptimr r-cran-desc 164s r-cran-diagram r-cran-diffobj r-cran-digest r-cran-dotcall64 r-cran-dplyr 164s r-cran-dqrng r-cran-e1071 r-cran-evaluate r-cran-fansi r-cran-farver 164s r-cran-fastdummies r-cran-fastica r-cran-fastmap r-cran-fitdistrplus 164s r-cran-fnn r-cran-fontawesome r-cran-foreach r-cran-formatr r-cran-fs 164s r-cran-futile.logger r-cran-futile.options r-cran-future r-cran-future.apply 164s r-cran-gdata r-cran-generics r-cran-ggbeeswarm r-cran-ggplot2 r-cran-ggrastr 164s r-cran-ggrepel r-cran-ggridges r-cran-globals r-cran-glue r-cran-goftest 164s r-cran-gower r-cran-gplots r-cran-gridextra r-cran-gtable r-cran-gtools 164s r-cran-hardhat r-cran-hdf5r r-cran-here r-cran-highr r-cran-htmltools 164s r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-ica r-cran-igraph 164s r-cran-ipred r-cran-irlba r-cran-isoband r-cran-iterators r-cran-jquerylib 164s r-cran-jsonlite r-cran-kernlab r-cran-kernsmooth r-cran-knitr 164s r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lava 164s r-cran-lazyeval r-cran-leiden r-cran-leidenbase r-cran-lifecycle 164s r-cran-listenv r-cran-littler r-cran-lmtest r-cran-locfit r-cran-lubridate 164s r-cran-magrittr r-cran-mass r-cran-mathjaxr r-cran-matrix 164s r-cran-matrixmodels r-cran-matrixstats r-cran-memoise r-cran-metap 164s r-cran-mgcv r-cran-mime r-cran-miniui r-cran-mixtools r-cran-mnormt 164s r-cran-modelmetrics r-cran-multcomp r-cran-munsell r-cran-mutoss 164s r-cran-mvtnorm r-cran-nlme r-cran-nnet r-cran-numderiv r-cran-openssl 164s r-cran-parallelly r-cran-patchwork r-cran-pbapply r-cran-pheatmap 164s r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 164s r-cran-pkgload r-cran-plotly r-cran-plotrix r-cran-plyr r-cran-png 164s r-cran-polyclip r-cran-praise r-cran-proc r-cran-processx r-cran-prodlim 164s r-cran-progressr r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr 164s r-cran-qqconf r-cran-quantreg r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils 164s r-cran-r6 r-cran-ragg r-cran-rann r-cran-rappdirs r-cran-rbibutils 164s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppannoy r-cran-rcpparmadillo 164s r-cran-rcppeigen r-cran-rcpphnsw r-cran-rcppprogress r-cran-rcpptoml 164s r-cran-rcurl r-cran-rdpack r-cran-recipes r-cran-reshape2 r-cran-restfulr 164s r-cran-reticulate r-cran-rjson r-cran-rlang r-cran-rmarkdown 164s r-cran-robustbase r-cran-rocr r-cran-rpart r-cran-rprojroot r-cran-rspectra 164s r-cran-rsvd r-cran-rtsne r-cran-runit r-cran-sandwich r-cran-sass 164s r-cran-scales r-cran-scattermore r-cran-sctransform r-cran-segmented 164s r-cran-seurat r-cran-seuratobject r-cran-shape r-cran-shiny r-cran-shinyjs 164s r-cran-sitmo r-cran-slam r-cran-sn r-cran-snow r-cran-sourcetools r-cran-sp 164s r-cran-spam r-cran-sparsem r-cran-spatstat.data r-cran-spatstat.explore 164s r-cran-spatstat.geom r-cran-spatstat.random r-cran-spatstat.sparse 164s r-cran-spatstat.utils r-cran-squarem r-cran-statmod r-cran-stringi 164s r-cran-stringr r-cran-survival r-cran-sys r-cran-systemfonts r-cran-tensor 164s r-cran-testthat r-cran-textshaping r-cran-tfisher r-cran-th.data 164s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-timechange 164s r-cran-timedate r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-uwot 164s r-cran-vctrs r-cran-vgam r-cran-vipor r-cran-viridis r-cran-viridislite 164s r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml 164s r-cran-zoo unzip x11-common xdg-utils zip zlib1g-dev 164s The following packages will be upgraded: 164s gcc-14-base libatomic1 libgcc-s1 libstdc++6 164s 4 upgraded, 371 newly installed, 0 to remove and 126 not upgraded. 164s Need to get 414 MB of archives. 164s After this operation, 1094 MB of additional disk space will be used. 164s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 gcc-14-base amd64 14.2.0-13ubuntu1 [53.0 kB] 164s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libstdc++6 amd64 14.2.0-13ubuntu1 [787 kB] 164s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libatomic1 amd64 14.2.0-13ubuntu1 [10.3 kB] 164s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgcc-s1 amd64 14.2.0-13ubuntu1 [78.2 kB] 164s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 164s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 164s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 164s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 164s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 164s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 164s Get:11 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 164s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 164s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 11+nmu1 [5936 B] 164s Get:14 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 164s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgomp1 amd64 14.2.0-13ubuntu1 [148 kB] 164s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsuitesparseconfig7 amd64 1:7.8.3+dfsg-2 [13.4 kB] 164s Get:17 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamd3 amd64 1:7.8.3+dfsg-2 [31.1 kB] 164s Get:18 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libasan8 amd64 14.2.0-13ubuntu1 [2998 kB] 165s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-4 [332 kB] 165s Get:20 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libitm1 amd64 14.2.0-13ubuntu1 [29.1 kB] 165s Get:21 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 liblsan0 amd64 14.2.0-13ubuntu1 [1317 kB] 165s Get:22 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libtsan2 amd64 14.2.0-13ubuntu1 [2732 kB] 165s Get:23 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libubsan1 amd64 14.2.0-13ubuntu1 [1177 kB] 165s Get:24 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libhwasan0 amd64 14.2.0-13ubuntu1 [1634 kB] 165s Get:25 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libquadmath0 amd64 14.2.0-13ubuntu1 [153 kB] 165s Get:26 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgcc-14-dev amd64 14.2.0-13ubuntu1 [2815 kB] 165s Get:27 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libstdc++-14-dev amd64 14.2.0-13ubuntu1 [2508 kB] 165s Get:28 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost1.83-dev amd64 1.83.0-4ubuntu2 [10.7 MB] 165s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 165s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 165s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 165s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 165s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 165s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 165s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libcolamd3 amd64 1:7.8.3+dfsg-2 [19.5 kB] 165s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 165s Get:37 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 165s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libfftw3-double3 amd64 3.3.10-2fakesync1build1 [839 kB] 165s Get:39 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgfortran5 amd64 14.2.0-13ubuntu1 [909 kB] 165s Get:40 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libltdl7 amd64 2.5.4-2 [46.0 kB] 165s Get:41 http://ftpmaster.internal/ubuntu plucky/universe amd64 libglpk40 amd64 5.0-1build2 [369 kB] 165s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 165s Get:43 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 165s Get:44 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 165s Get:45 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-5ubuntu1 [1367 kB] 165s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-5ubuntu1 [59.5 kB] 165s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 165s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 165s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 165s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 165s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 165s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 165s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 165s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 165s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 165s Get:56 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 165s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 165s Get:58 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 165s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 165s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 165s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 165s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 165s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 165s Get:64 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 165s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-4 [3177 kB] 166s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 166s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 166s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 166s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 166s Get:70 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpango-1.0-0 amd64 1.56.0-3 [255 kB] 166s Get:71 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpangoft2-1.0-0 amd64 1.56.0-3 [52.5 kB] 166s Get:72 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpangocairo-1.0-0 amd64 1.56.0-3 [29.1 kB] 166s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 166s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 166s Get:75 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 166s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 166s Get:77 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 166s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 166s Get:79 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 166s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 166s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 166s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 166s Get:83 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 166s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 166s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu1 [185 kB] 166s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 166s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-0ubuntu1 [67.5 kB] 166s Get:88 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-base-core amd64 4.4.2-1build1 [28.9 MB] 167s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 167s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 167s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 167s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 167s Get:93 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 167s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 167s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 168s Get:96 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 168s Get:97 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 168s Get:98 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 168s Get:99 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 168s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 168s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 168s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 168s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 168s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 168s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 169s Get:106 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 169s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.0-1 [221 kB] 169s Get:108 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 169s Get:109 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-graph amd64 1.84.1-1 [1298 kB] 169s Get:110 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-rbgl amd64 1.82.0+dfsg-2 [588 kB] 170s Get:111 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml amd64 3.99-0.18-1 [1748 kB] 170s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bitops amd64 1.0-8-1 [30.3 kB] 170s Get:113 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB] 170s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-runit all 0.4.33-1 [377 kB] 170s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 170s Get:116 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biocviews all 1.74.0-2 [670 kB] 170s Get:117 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB] 171s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 171s Get:119 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 171s Get:120 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 171s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 5.2.3+dfsg-1ubuntu1 [180 kB] 171s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.8.9+dfsg-1 [445 kB] 171s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 171s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 171s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 171s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.2.0+dfsg-1 [405 kB] 171s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 171s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 171s Get:129 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 171s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 172s Get:131 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-genomeinfodb all 1.42.1+dfsg-2 [3883 kB] 173s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 173s Get:133 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 173s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 173s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-1-1 [4199 kB] 174s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.4.1-1 [513 kB] 174s Get:137 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-matrixgenerics all 1.18.0-2 [446 kB] 174s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 174s Get:139 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 174s Get:140 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-sparsearray amd64 1.6.0+dfsg-2 [1392 kB] 174s Get:141 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 174s Get:142 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB] 174s Get:143 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 174s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-locfit amd64 1.5-9.10-1 [518 kB] 174s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.3-1 [1348 kB] 174s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 174s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.4-1 [1708 kB] 174s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 174s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 174s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 174s Get:151 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 174s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.166-1 [2314 kB] 174s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 174s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 174s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 174s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 174s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB] 174s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 174s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 174s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 174s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 174s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 174s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 174s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 174s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 174s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 174s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 174s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 174s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 174s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 174s Get:171 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 175s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpparmadillo amd64 14.2.2-1-1 [864 kB] 175s Get:173 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-deseq2 amd64 1.46.0+dfsg-2 [1250 kB] 175s Get:174 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB] 175s Get:175 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB] 175s Get:176 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB] 175s Get:177 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-hsmmsinglecell all 1.26.0-2 [16.7 MB] 175s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 175s Get:179 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-limma amd64 3.62.2+dfsg-1 [1969 kB] 175s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vgam amd64 1.1-11-1 [7726 kB] 176s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-irlba amd64 2.3.5.1-4 [295 kB] 176s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 176s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ddrtree amd64 0.1.5-2 [154 kB] 176s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-igraph amd64 2.0.3-1 [5098 kB] 176s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 176s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cluster amd64 2.1.8-1 [579 kB] 176s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-combinat all 0.0-8-7build1 [43.1 kB] 176s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastica amd64 1.2-7-1 [46.6 kB] 176s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rtsne amd64 0.17-1 [109 kB] 176s Get:190 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB] 176s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 176s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-reshape2 amd64 1.4.4-2build1 [114 kB] 176s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-leidenbase amd64 0.1.27-1 [2366 kB] 176s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 176s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 176s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 176s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pheatmap all 1.0.12-2build1 [78.2 kB] 176s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 176s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-slam amd64 0.1-55-1 [188 kB] 176s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 176s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 177s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rann amd64 2.6.2-1 [46.3 kB] 177s Get:203 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-monocle amd64 2.34.0-2 [1522 kB] 177s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB] 178s Get:205 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-multtest amd64 2.62.0-2 [844 kB] 178s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB] 178s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 178s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 178s Get:209 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-rtracklayer amd64 1.66.0-2 [5227 kB] 178s Get:210 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-singlecellexperiment all 1.28.1+ds-2 [829 kB] 178s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 178s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ape amd64 5.8-1 [2923 kB] 178s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 178s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-beeswarm amd64 0.4.0-1 [82.3 kB] 178s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 178s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 178s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 178s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 178s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 178s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 178s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 178s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 178s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.4+dfsg-1 [245 kB] 178s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 178s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 178s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.7.0+dfsg-1 [4255 kB] 179s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cairo amd64 1.6-2-1 [88.8 kB] 179s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.8.0-1 [395 kB] 179s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.4-1 [353 kB] 179s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 179s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 179s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-e1071 amd64 1.7-16-1 [565 kB] 179s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-iterators all 1.0.14-1 [336 kB] 179s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-foreach all 1.5.2-1 [124 kB] 179s Get:235 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-data.table amd64 1.16.4+dfsg-1 [2032 kB] 179s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-modelmetrics amd64 1.2.2.2-1build1 [128 kB] 179s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-proc amd64 1.18.5-1 [966 kB] 179s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tzdb amd64 0.4.0-2 [521 kB] 179s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-clock amd64 0.7.1-1 [1804 kB] 179s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gower amd64 1.0.1-1 [207 kB] 179s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-hardhat all 1.4.0+dfsg-1 [565 kB] 179s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB] 179s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nnet amd64 7.3-20-1 [116 kB] 179s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shape all 1.4.6.1-1 [749 kB] 179s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diagram all 1.6.5-2 [656 kB] 179s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernsmooth amd64 2.23-26-1 [94.5 kB] 179s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-globals all 0.16.3-1 [120 kB] 179s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 179s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-parallelly amd64 1.38.0-1 [385 kB] 179s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 180s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future.apply all 1.11.2+dfsg-1 [172 kB] 180s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-numderiv all 2016.8-1.1-3 [115 kB] 180s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-progressr all 0.14.0-1 [338 kB] 180s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-squarem all 2021.1-1 [179 kB] 180s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lava all 1.7.3+dfsg-1 [2166 kB] 180s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-prodlim amd64 2024.06.25-1 [415 kB] 180s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ipred amd64 0.9-15-1 [386 kB] 180s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-timechange amd64 0.3.0-1 [178 kB] 180s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lubridate amd64 1.9.3+dfsg-1 [1010 kB] 180s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 180s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 180s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-timedate amd64 4041.110-1 [1208 kB] 180s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-recipes all 1.1.0+dfsg-1 [2035 kB] 180s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-caret amd64 6.0-94+dfsg-1 [3434 kB] 180s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-catools amd64 1.18.2-1 [201 kB] 180s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.0-1 [111 kB] 180s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.49+dfsg-1 [545 kB] 180s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 180s Get:269 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 181s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 181s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 181s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.53-1 [145 kB] 181s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 181s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 181s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.0+dfsg-1 [287 kB] 181s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 181s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 181s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 181s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 181s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 181s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.9.1+dfsg-1 [3111 kB] 181s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.28+dfsg-1 [1501 kB] 181s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 181s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-miniui all 0.1.1.1-3build1 [36.1 kB] 181s Get:285 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shinyjs all 2.1.0-1 [967 kB] 181s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colourpicker all 1.3.0+dfsg-1 [1191 kB] 181s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-conquer amd64 1.3.3-1 [499 kB] 181s Get:288 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cowplot all 1.1.3+dfsg-1 [614 kB] 181s Get:289 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 181s Get:290 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 181s Get:291 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 181s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deoptimr all 1.1-3-1-1 [76.6 kB] 181s Get:293 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 181s Get:294 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 182s Get:295 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dotcall64 amd64 1.1-1-1 [38.1 kB] 182s Get:296 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sitmo amd64 2.0.2-1 [130 kB] 182s Get:297 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dqrng amd64 0.3.2+dfsg-1 [161 kB] 182s Get:298 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastdummies all 1.7.4-1 [49.7 kB] 182s Get:299 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fitdistrplus all 1.2-1-1 [2038 kB] 182s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB] 182s Get:301 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtools amd64 3.9.5-1 [340 kB] 182s Get:302 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gdata all 3.0.1-1 [491 kB] 182s Get:303 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vipor all 0.4.7-1 [4624 kB] 182s Get:304 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggbeeswarm all 0.7.2-1 [1732 kB] 182s Get:305 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 182s Get:306 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-systemfonts amd64 1.1.0-1 [245 kB] 182s Get:307 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-textshaping amd64 0.3.7-2 [95.5 kB] 182s Get:308 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ragg amd64 1.3.3-1 [510 kB] 183s Get:309 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggrastr all 1.0.2-1 [2566 kB] 183s Get:310 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggrepel amd64 0.9.5-2 [254 kB] 183s Get:311 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggridges all 0.5.6-1 [2195 kB] 183s Get:312 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-goftest amd64 1.2-3-1 [59.5 kB] 183s Get:313 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gplots all 3.2.0-1 [484 kB] 183s Get:314 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-hdf5r amd64 1.3.11+dfsg-1 [1979 kB] 183s Get:315 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 183s Get:316 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-here all 1.0.1-2 [50.3 kB] 183s Get:317 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ica all 1.0-3-1 [85.4 kB] 183s Get:318 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernlab amd64 0.9-33-1 [1947 kB] 183s Get:319 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpptoml amd64 0.2.2+dfsg-1 [110 kB] 183s Get:320 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-reticulate amd64 1.39.0+dfsg-1 [1238 kB] 183s Get:321 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-leiden all 0.4.3.1+dfsg-1 [71.9 kB] 183s Get:322 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-zoo amd64 1.8-12-2 [984 kB] 183s Get:323 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lmtest amd64 0.9.40-1 [396 kB] 183s Get:324 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mathjaxr all 1.6-0-1 [605 kB] 183s Get:325 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixmodels all 0.5-3-1 [361 kB] 183s Get:326 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rbibutils amd64 2.3-1 [1023 kB] 183s Get:327 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rdpack all 2.6.2-1 [757 kB] 183s Get:328 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mnormt amd64 2.1.1-2 [170 kB] 183s Get:329 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sparsem amd64 1.84-2-1 [813 kB] 183s Get:330 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-quantreg amd64 5.99.1-1 [1455 kB] 183s Get:331 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sn all 2.1.1-2 [1815 kB] 183s Get:332 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-mvtnorm amd64 1.3-3-1 [923 kB] 183s Get:333 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tfisher all 0.2.0-3 [79.8 kB] 183s Get:334 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plotrix all 3.8-4-1 [1120 kB] 183s Get:335 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-th.data all 1.1-2-2 [8794 kB] 184s Get:336 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sandwich all 3.1-1-1 [1483 kB] 184s Get:337 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-multcomp all 1.4-26-2 [699 kB] 184s Get:338 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mutoss all 0.1-13-1 [1123 kB] 184s Get:339 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-robustbase amd64 0.99-4-1-1 [3038 kB] 184s Get:340 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-qqconf amd64 1.3.2+dfsg-1 [157 kB] 184s Get:341 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-metap all 1.11-1 [570 kB] 184s Get:342 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plotly all 4.10.4+dfsg-2 [3666 kB] 184s Get:343 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-segmented all 2.1-3-1 [1366 kB] 184s Get:344 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mixtools amd64 2.0.0-1 [1399 kB] 184s Get:345 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-patchwork all 1.3.0-1 [3220 kB] 184s Get:346 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 184s Get:347 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.4-1 [212 kB] 184s Get:348 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 184s Get:349 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB] 184s Get:350 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 184s Get:351 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 184s Get:352 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.oo all 1.26.0-1 [955 kB] 184s Get:353 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.utils all 2.12.3-1 [1386 kB] 184s Get:354 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppannoy amd64 0.0.22-1 [235 kB] 184s Get:355 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpphnsw amd64 0.5.0+ds-1 [171 kB] 184s Get:356 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppprogress all 0.4.2-2build1 [22.0 kB] 184s Get:357 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rocr all 1.0-11-3 [456 kB] 184s Get:358 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rspectra amd64 0.16-2-1 [448 kB] 184s Get:359 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsvd all 1.0.5-1 [3589 kB] 184s Get:360 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scattermore amd64 1.2-1 [331 kB] 184s Get:361 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sctransform amd64 0.4.1-1 [504 kB] 184s Get:362 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sp amd64 1:2.1-4+dfsg-1 [1472 kB] 184s Get:363 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spam amd64 2.11-0-1 [2758 kB] 184s Get:364 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-seuratobject amd64 5.0.2-1 [1744 kB] 184s Get:365 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.utils amd64 3.1-0-1 [381 kB] 185s Get:366 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.data all 3.1-2-1 [4039 kB] 185s Get:367 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.geom amd64 3.2-9-2 [3946 kB] 185s Get:368 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.random amd64 3.2-3-1 [1169 kB] 185s Get:369 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tensor all 1.5-4 [15.7 kB] 185s Get:370 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.sparse amd64 3.0-3-1 [215 kB] 185s Get:371 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.explore amd64 3.2-7-1 [3432 kB] 185s Get:372 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-uwot amd64 0.2.2-1 [947 kB] 185s Get:373 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-seurat amd64 5.1.0-1 [3255 kB] 185s Get:374 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-1 [150 kB] 185s Get:375 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.1.1-1 [1636 kB] 186s Preconfiguring packages ... 186s Fetched 414 MB in 21s (19.4 MB/s) 186s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 186s Preparing to unpack .../gcc-14-base_14.2.0-13ubuntu1_amd64.deb ... 186s Unpacking gcc-14-base:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 186s Setting up gcc-14-base:amd64 (14.2.0-13ubuntu1) ... 186s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 186s Preparing to unpack .../libstdc++6_14.2.0-13ubuntu1_amd64.deb ... 186s Unpacking libstdc++6:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 186s Setting up libstdc++6:amd64 (14.2.0-13ubuntu1) ... 186s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 186s Preparing to unpack .../libatomic1_14.2.0-13ubuntu1_amd64.deb ... 186s Unpacking libatomic1:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 186s Preparing to unpack .../libgcc-s1_14.2.0-13ubuntu1_amd64.deb ... 186s Unpacking libgcc-s1:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 186s Setting up libgcc-s1:amd64 (14.2.0-13ubuntu1) ... 186s Selecting previously unselected package fonts-dejavu-mono. 186s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 186s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8_all.deb ... 186s Unpacking fonts-dejavu-mono (2.37-8) ... 186s Selecting previously unselected package fonts-dejavu-core. 186s Preparing to unpack .../001-fonts-dejavu-core_2.37-8_all.deb ... 186s Unpacking fonts-dejavu-core (2.37-8) ... 186s Selecting previously unselected package fontconfig-config. 186s Preparing to unpack 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previously unselected package libxrender1:amd64. 189s Preparing to unpack .../028-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 189s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 189s Selecting previously unselected package libcairo2:amd64. 189s Preparing to unpack .../029-libcairo2_1.18.2-2_amd64.deb ... 189s Unpacking libcairo2:amd64 (1.18.2-2) ... 189s Selecting previously unselected package libcolamd3:amd64. 189s Preparing to unpack .../030-libcolamd3_1%3a7.8.3+dfsg-2_amd64.deb ... 189s Unpacking libcolamd3:amd64 (1:7.8.3+dfsg-2) ... 189s Selecting previously unselected package libdatrie1:amd64. 190s Preparing to unpack .../031-libdatrie1_0.2.13-3build1_amd64.deb ... 190s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 190s Selecting previously unselected package libdeflate0:amd64. 190s Preparing to unpack .../032-libdeflate0_1.23-1_amd64.deb ... 190s Unpacking libdeflate0:amd64 (1.23-1) ... 190s Selecting previously unselected package libfftw3-double3:amd64. 190s Preparing 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package libjs-prettify. 190s Preparing to unpack .../059-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 190s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 190s Selecting previously unselected package liblapack3:amd64. 190s Preparing to unpack .../060-liblapack3_3.12.0-4_amd64.deb ... 190s Unpacking liblapack3:amd64 (3.12.0-4) ... 190s Selecting previously unselected package liblerc4:amd64. 190s Preparing to unpack .../061-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 190s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 190s Selecting previously unselected package liblua5.4-0:amd64. 190s Preparing to unpack .../062-liblua5.4-0_5.4.7-1_amd64.deb ... 190s Unpacking liblua5.4-0:amd64 (5.4.7-1) ... 191s Selecting previously unselected package libthai-data. 191s Preparing to unpack .../063-libthai-data_0.1.29-2build1_all.deb ... 191s Unpacking libthai-data (0.1.29-2build1) ... 191s Selecting previously unselected package libthai0:amd64. 191s Preparing to unpack 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191s Unpacking libpaper-utils (2.2.5-0.3) ... 191s Selecting previously unselected package libsharpyuv0:amd64. 191s Preparing to unpack .../070-libsharpyuv0_1.5.0-0.1_amd64.deb ... 191s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 191s Selecting previously unselected package libsm6:amd64. 191s Preparing to unpack .../071-libsm6_2%3a1.2.4-1_amd64.deb ... 191s Unpacking libsm6:amd64 (2:1.2.4-1) ... 191s Selecting previously unselected package libtcl8.6:amd64. 191s Preparing to unpack .../072-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 191s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 191s Selecting previously unselected package libjbig0:amd64. 191s Preparing to unpack .../073-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 191s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 191s Selecting previously unselected package libwebp7:amd64. 191s Preparing to unpack .../074-libwebp7_1.5.0-0.1_amd64.deb ... 191s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 191s Selecting previously unselected package libtiff6:amd64. 191s Preparing to unpack .../075-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 191s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 191s Selecting previously unselected package libxft2:amd64. 191s Preparing to unpack .../076-libxft2_2.3.6-1build1_amd64.deb ... 191s Unpacking libxft2:amd64 (2.3.6-1build1) ... 191s Selecting previously unselected package libxss1:amd64. 191s Preparing to unpack .../077-libxss1_1%3a1.2.3-1build3_amd64.deb ... 191s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 191s Selecting previously unselected package libtk8.6:amd64. 191s Preparing to unpack .../078-libtk8.6_8.6.16-1_amd64.deb ... 191s Unpacking libtk8.6:amd64 (8.6.16-1) ... 191s Selecting previously unselected package libxt6t64:amd64. 191s Preparing to unpack .../079-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 191s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 191s Selecting previously unselected package zip. 191s Preparing to unpack .../080-zip_3.0-14ubuntu1_amd64.deb ... 191s Unpacking zip (3.0-14ubuntu1) ... 191s Selecting previously unselected package unzip. 191s Preparing to unpack .../081-unzip_6.0-28ubuntu6_amd64.deb ... 191s Unpacking unzip (6.0-28ubuntu6) ... 191s Selecting previously unselected package xdg-utils. 191s Preparing to unpack .../082-xdg-utils_1.2.1-0ubuntu1_all.deb ... 191s Unpacking xdg-utils (1.2.1-0ubuntu1) ... 191s Selecting previously unselected package r-base-core. 191s Preparing to unpack .../083-r-base-core_4.4.2-1build1_amd64.deb ... 191s Unpacking r-base-core (4.4.2-1build1) ... 191s Selecting previously unselected package r-cran-littler. 191s Preparing to unpack .../084-r-cran-littler_0.3.20-2_amd64.deb ... 191s Unpacking r-cran-littler (0.3.20-2) ... 191s Selecting previously unselected package littler. 192s Preparing to unpack .../085-littler_0.3.20-2_all.deb ... 192s Unpacking littler (0.3.20-2) ... 192s Selecting previously unselected package node-bootstrap-sass. 192s Preparing to unpack .../086-node-bootstrap-sass_3.4.3-2_all.deb 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r-bioc-biobase. 192s Preparing to unpack .../092-r-bioc-biobase_2.66.0-2_amd64.deb ... 192s Unpacking r-bioc-biobase (2.66.0-2) ... 192s Selecting previously unselected package r-bioc-s4vectors. 192s Preparing to unpack .../093-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 192s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 192s Selecting previously unselected package r-bioc-biocio. 193s Preparing to unpack .../094-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 193s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 193s Selecting previously unselected package r-cran-formatr. 193s Preparing to unpack .../095-r-cran-formatr_1.14-2_all.deb ... 193s Unpacking r-cran-formatr (1.14-2) ... 193s Selecting previously unselected package r-cran-lambda.r. 193s Preparing to unpack .../096-r-cran-lambda.r_1.2.4-2build1_all.deb ... 193s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 193s Selecting previously unselected package r-cran-futile.options. 193s Preparing to unpack .../097-r-cran-futile.options_1.0.1-3build1_all.deb ... 193s Unpacking r-cran-futile.options (1.0.1-3build1) ... 193s Selecting previously unselected package r-cran-futile.logger. 193s Preparing to unpack .../098-r-cran-futile.logger_1.4.3-4build1_all.deb ... 193s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 193s Selecting previously unselected package r-cran-snow. 193s Preparing to unpack .../099-r-cran-snow_1%3a0.4.4-2_all.deb ... 193s Unpacking r-cran-snow (1:0.4.4-2) ... 193s Selecting previously unselected package r-cran-codetools. 193s Preparing to unpack .../100-r-cran-codetools_0.2-20-1_all.deb ... 193s Unpacking r-cran-codetools (0.2-20-1) ... 193s Selecting previously unselected package r-cran-bh. 193s Preparing to unpack .../101-r-cran-bh_1.84.0-1_all.deb ... 193s Unpacking r-cran-bh (1.84.0-1) ... 193s Selecting previously unselected package r-cran-cpp11. 193s Preparing to unpack .../102-r-cran-cpp11_0.5.0-1_all.deb ... 193s Unpacking r-cran-cpp11 (0.5.0-1) ... 193s Selecting previously unselected package r-bioc-biocparallel. 193s Preparing to unpack .../103-r-bioc-biocparallel_1.40.0-2_amd64.deb ... 193s Unpacking r-bioc-biocparallel (1.40.0-2) ... 193s Selecting previously unselected package r-bioc-graph. 193s Preparing to unpack .../104-r-bioc-graph_1.84.1-1_amd64.deb ... 193s Unpacking r-bioc-graph (1.84.1-1) ... 193s Selecting previously unselected package r-bioc-rbgl. 193s Preparing to unpack .../105-r-bioc-rbgl_1.82.0+dfsg-2_amd64.deb ... 193s Unpacking r-bioc-rbgl (1.82.0+dfsg-2) ... 193s Selecting previously unselected package r-cran-xml. 193s Preparing to unpack .../106-r-cran-xml_3.99-0.18-1_amd64.deb ... 193s Unpacking r-cran-xml (3.99-0.18-1) ... 193s Selecting previously unselected package r-cran-bitops. 193s Preparing to unpack .../107-r-cran-bitops_1.0-8-1_amd64.deb ... 193s Unpacking r-cran-bitops (1.0-8-1) ... 193s Selecting previously unselected package r-cran-rcurl. 193s Preparing to unpack .../108-r-cran-rcurl_1.98-1.16+dfsg-1_amd64.deb ... 193s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 193s Selecting previously unselected package r-cran-runit. 193s Preparing to unpack .../109-r-cran-runit_0.4.33-1_all.deb ... 193s Unpacking r-cran-runit (0.4.33-1) ... 193s Selecting previously unselected package r-cran-biocmanager. 193s Preparing to unpack .../110-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 193s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 193s Selecting previously unselected package r-bioc-biocviews. 193s Preparing to unpack .../111-r-bioc-biocviews_1.74.0-2_all.deb ... 193s Unpacking r-bioc-biocviews (1.74.0-2) ... 193s Selecting previously unselected package r-bioc-iranges. 193s Preparing to unpack .../112-r-bioc-iranges_2.40.1-2_amd64.deb ... 193s Unpacking r-bioc-iranges (2.40.1-2) ... 193s Selecting previously unselected package zlib1g-dev:amd64. 193s Preparing to unpack .../113-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 193s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 193s Selecting previously unselected package r-bioc-zlibbioc. 193s Preparing to unpack .../114-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 193s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 193s Selecting previously unselected package r-bioc-xvector. 193s Preparing to unpack .../115-r-bioc-xvector_0.46.0-2_amd64.deb ... 193s Unpacking r-bioc-xvector (0.46.0-2) ... 193s Selecting previously unselected package r-cran-curl. 193s Preparing to unpack .../116-r-cran-curl_5.2.3+dfsg-1ubuntu1_amd64.deb ... 193s Unpacking r-cran-curl (5.2.3+dfsg-1ubuntu1) ... 193s Selecting previously unselected package r-cran-jsonlite. 193s Preparing to unpack .../117-r-cran-jsonlite_1.8.9+dfsg-1_amd64.deb ... 193s Unpacking r-cran-jsonlite (1.8.9+dfsg-1) ... 193s Selecting previously unselected package r-cran-mime. 193s Preparing to unpack .../118-r-cran-mime_0.12-2_amd64.deb ... 193s Unpacking r-cran-mime (0.12-2) ... 193s Selecting previously unselected package r-cran-sys. 193s Preparing to unpack .../119-r-cran-sys_3.4.3-1_amd64.deb ... 193s Unpacking r-cran-sys (3.4.3-1) ... 193s Selecting previously unselected package r-cran-askpass. 193s Preparing to unpack .../120-r-cran-askpass_1.2.1-1_amd64.deb ... 193s Unpacking r-cran-askpass (1.2.1-1) ... 193s Selecting previously unselected package r-cran-openssl. 193s Preparing to unpack .../121-r-cran-openssl_2.2.0+dfsg-1_amd64.deb ... 193s Unpacking r-cran-openssl (2.2.0+dfsg-1) ... 194s Selecting previously unselected package r-cran-r6. 194s Preparing to unpack .../122-r-cran-r6_2.5.1-1_all.deb ... 194s Unpacking r-cran-r6 (2.5.1-1) ... 194s Selecting previously unselected package r-cran-httr. 194s Preparing to unpack .../123-r-cran-httr_1.4.7+dfsg-1_all.deb ... 194s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 194s Selecting previously unselected package r-bioc-ucsc.utils. 194s Preparing to unpack .../124-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 194s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 194s Selecting previously unselected package r-bioc-genomeinfodbdata. 194s Preparing to unpack .../125-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 194s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 194s Selecting previously unselected package r-bioc-genomeinfodb. 194s Preparing to unpack .../126-r-bioc-genomeinfodb_1.42.1+dfsg-2_all.deb ... 194s Unpacking r-bioc-genomeinfodb (1.42.1+dfsg-2) ... 194s Selecting previously unselected package r-cran-crayon. 194s Preparing to unpack .../127-r-cran-crayon_1.5.2-1_all.deb ... 194s Unpacking r-cran-crayon (1.5.2-1) ... 194s Selecting previously unselected package r-bioc-biostrings. 194s Preparing to unpack .../128-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 194s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 194s Selecting previously unselected package r-cran-lattice. 194s Preparing to unpack .../129-r-cran-lattice_0.22-6-1_amd64.deb ... 194s Unpacking r-cran-lattice (0.22-6-1) ... 194s Selecting previously unselected package r-cran-matrix. 194s Preparing to unpack .../130-r-cran-matrix_1.7-1-1_amd64.deb ... 194s Unpacking r-cran-matrix (1.7-1-1) ... 194s Selecting previously unselected package r-cran-matrixstats. 194s Preparing to unpack .../131-r-cran-matrixstats_1.4.1-1_amd64.deb ... 194s Unpacking r-cran-matrixstats (1.4.1-1) ... 194s Selecting previously unselected package r-bioc-matrixgenerics. 194s Preparing to unpack .../132-r-bioc-matrixgenerics_1.18.0-2_all.deb ... 194s Unpacking r-bioc-matrixgenerics (1.18.0-2) ... 194s Selecting previously unselected package r-cran-abind. 194s Preparing to unpack .../133-r-cran-abind_1.4-8-1_all.deb ... 194s Unpacking r-cran-abind (1.4-8-1) ... 194s Selecting previously unselected package r-bioc-s4arrays. 194s Preparing to unpack .../134-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ... 194s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 194s Selecting previously unselected package r-bioc-sparsearray. 194s Preparing to unpack .../135-r-bioc-sparsearray_1.6.0+dfsg-2_amd64.deb ... 194s Unpacking r-bioc-sparsearray (1.6.0+dfsg-2) ... 194s Selecting previously unselected package r-bioc-delayedarray. 194s Preparing to unpack .../136-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ... 194s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 194s Selecting previously unselected package r-bioc-genomicranges. 194s Preparing to unpack .../137-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ... 194s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 194s Selecting previously unselected package r-bioc-summarizedexperiment. 194s Preparing to unpack .../138-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 194s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 194s Selecting previously unselected package r-cran-locfit. 194s Preparing to unpack .../139-r-cran-locfit_1.5-9.10-1_amd64.deb ... 194s Unpacking r-cran-locfit (1.5-9.10-1) ... 195s Selecting previously unselected package r-cran-cli. 195s Preparing to unpack .../140-r-cran-cli_3.6.3-1_amd64.deb ... 195s Unpacking r-cran-cli (3.6.3-1) ... 195s Selecting previously unselected package r-cran-glue. 195s Preparing to unpack .../141-r-cran-glue_1.8.0-1_amd64.deb ... 195s Unpacking r-cran-glue (1.8.0-1) ... 195s Selecting previously unselected package r-cran-rlang. 195s Preparing to unpack .../142-r-cran-rlang_1.1.4-1_amd64.deb ... 195s Unpacking r-cran-rlang (1.1.4-1) ... 195s Selecting previously unselected package r-cran-lifecycle. 195s Preparing to unpack .../143-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 195s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 195s Selecting previously unselected package r-cran-gtable. 195s Preparing to unpack .../144-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 195s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 195s Selecting previously unselected package r-cran-isoband. 195s Preparing to unpack .../145-r-cran-isoband_0.2.7-1_amd64.deb ... 195s Unpacking r-cran-isoband (0.2.7-1) ... 195s Selecting previously unselected package r-cran-mass. 195s Preparing to unpack .../146-r-cran-mass_7.3-64-1_amd64.deb ... 195s Unpacking r-cran-mass (7.3-64-1) ... 195s Selecting previously unselected package r-cran-nlme. 195s Preparing to unpack .../147-r-cran-nlme_3.1.166-1_amd64.deb ... 195s Unpacking r-cran-nlme (3.1.166-1) ... 195s Selecting previously unselected package r-cran-mgcv. 195s Preparing to unpack .../148-r-cran-mgcv_1.9-1-1_amd64.deb ... 195s Unpacking r-cran-mgcv (1.9-1-1) ... 195s Selecting previously unselected package r-cran-farver. 195s Preparing to unpack .../149-r-cran-farver_2.1.2-1_amd64.deb ... 195s Unpacking r-cran-farver (2.1.2-1) ... 195s Selecting previously unselected package r-cran-labeling. 195s Preparing to unpack .../150-r-cran-labeling_0.4.3-1_all.deb ... 195s Unpacking r-cran-labeling (0.4.3-1) ... 195s Selecting previously unselected package r-cran-colorspace. 195s Preparing to unpack .../151-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ... 195s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 195s Selecting previously unselected package r-cran-munsell. 195s Preparing to unpack .../152-r-cran-munsell_0.5.1-1_all.deb ... 195s Unpacking r-cran-munsell (0.5.1-1) ... 195s Selecting previously unselected package r-cran-rcolorbrewer. 195s Preparing to unpack .../153-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 195s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 195s Selecting previously unselected package r-cran-viridislite. 195s Preparing to unpack .../154-r-cran-viridislite_0.4.2-2_all.deb ... 195s Unpacking r-cran-viridislite (0.4.2-2) ... 195s Selecting previously unselected package r-cran-scales. 195s Preparing to unpack .../155-r-cran-scales_1.3.0-1_all.deb ... 195s Unpacking r-cran-scales (1.3.0-1) ... 195s Selecting previously unselected package r-cran-fansi. 195s Preparing to unpack .../156-r-cran-fansi_1.0.5-1_amd64.deb ... 195s Unpacking r-cran-fansi (1.0.5-1) ... 195s Selecting previously unselected package r-cran-magrittr. 195s Preparing to unpack .../157-r-cran-magrittr_2.0.3-1_amd64.deb ... 195s Unpacking r-cran-magrittr (2.0.3-1) ... 195s Selecting previously unselected package r-cran-utf8. 195s Preparing to unpack .../158-r-cran-utf8_1.2.4-1_amd64.deb ... 195s Unpacking r-cran-utf8 (1.2.4-1) ... 195s Selecting previously unselected package r-cran-vctrs. 195s Preparing to unpack .../159-r-cran-vctrs_0.6.5-1_amd64.deb ... 195s Unpacking r-cran-vctrs (0.6.5-1) ... 195s Selecting previously unselected package r-cran-pillar. 195s Preparing to unpack .../160-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 195s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 195s Selecting previously unselected package r-cran-pkgconfig. 195s Preparing to unpack .../161-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 195s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 195s Selecting previously unselected package r-cran-tibble. 195s Preparing to unpack .../162-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 195s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 196s Selecting previously unselected package r-cran-withr. 196s Preparing to unpack .../163-r-cran-withr_3.0.2+dfsg-1_all.deb ... 196s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 196s Selecting previously unselected package r-cran-ggplot2. 196s Preparing to unpack .../164-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 196s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 196s Selecting previously unselected package r-cran-pkgkitten. 196s Preparing to unpack .../165-r-cran-pkgkitten_0.2.4-1_all.deb ... 196s Unpacking r-cran-pkgkitten (0.2.4-1) ... 196s Selecting previously unselected package r-cran-rcpp. 196s Preparing to unpack .../166-r-cran-rcpp_1.0.14-1_amd64.deb ... 196s Unpacking r-cran-rcpp (1.0.14-1) ... 196s Selecting previously unselected package r-cran-rcpparmadillo. 196s Preparing to unpack .../167-r-cran-rcpparmadillo_14.2.2-1-1_amd64.deb ... 196s Unpacking r-cran-rcpparmadillo (14.2.2-1-1) ... 196s Selecting previously unselected package r-bioc-deseq2. 196s Preparing to unpack .../168-r-bioc-deseq2_1.46.0+dfsg-2_amd64.deb ... 196s Unpacking r-bioc-deseq2 (1.46.0+dfsg-2) ... 196s Selecting previously unselected package r-bioc-rhtslib. 196s Preparing to unpack .../169-r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb ... 196s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 196s Selecting previously unselected package r-bioc-rsamtools. 196s Preparing to unpack .../170-r-bioc-rsamtools_2.22.0+dfsg-2_amd64.deb ... 196s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 196s Selecting previously unselected package r-bioc-genomicalignments. 196s Preparing to unpack .../171-r-bioc-genomicalignments_1.42.0-2_amd64.deb ... 196s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 196s Selecting previously unselected package r-bioc-hsmmsinglecell. 196s Preparing to unpack .../172-r-bioc-hsmmsinglecell_1.26.0-2_all.deb ... 196s Unpacking r-bioc-hsmmsinglecell (1.26.0-2) ... 196s Selecting previously unselected package r-cran-statmod. 196s Preparing to unpack .../173-r-cran-statmod_1.5.0-1_amd64.deb ... 196s Unpacking r-cran-statmod (1.5.0-1) ... 196s Selecting previously unselected package r-bioc-limma. 196s Preparing to unpack .../174-r-bioc-limma_3.62.2+dfsg-1_amd64.deb ... 196s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 196s Selecting previously unselected package r-cran-vgam. 196s Preparing to unpack .../175-r-cran-vgam_1.1-11-1_amd64.deb ... 196s Unpacking r-cran-vgam (1.1-11-1) ... 196s Selecting previously unselected package r-cran-irlba. 196s Preparing to unpack .../176-r-cran-irlba_2.3.5.1-4_amd64.deb ... 196s Unpacking r-cran-irlba (2.3.5.1-4) ... 196s Selecting previously unselected package r-cran-rcppeigen. 196s Preparing to unpack .../177-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 196s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 197s Selecting previously unselected package r-cran-ddrtree. 197s Preparing to unpack .../178-r-cran-ddrtree_0.1.5-2_amd64.deb ... 197s Unpacking r-cran-ddrtree (0.1.5-2) ... 197s Selecting previously unselected package r-cran-igraph. 197s Preparing to unpack .../179-r-cran-igraph_2.0.3-1_amd64.deb ... 197s Unpacking r-cran-igraph (2.0.3-1) ... 197s Selecting previously unselected package r-cran-plyr. 197s Preparing to unpack .../180-r-cran-plyr_1.8.9-1_amd64.deb ... 197s Unpacking r-cran-plyr (1.8.9-1) ... 197s Selecting previously unselected package r-cran-cluster. 197s Preparing to unpack .../181-r-cran-cluster_2.1.8-1_amd64.deb ... 197s Unpacking r-cran-cluster (2.1.8-1) ... 197s Selecting previously unselected package r-cran-combinat. 197s Preparing to unpack .../182-r-cran-combinat_0.0-8-7build1_all.deb ... 197s Unpacking r-cran-combinat (0.0-8-7build1) ... 197s Selecting previously unselected package r-cran-fastica. 197s Preparing to unpack .../183-r-cran-fastica_1.2-7-1_amd64.deb ... 197s Unpacking r-cran-fastica (1.2-7-1) ... 197s Selecting previously unselected package r-cran-rtsne. 197s Preparing to unpack .../184-r-cran-rtsne_0.17-1_amd64.deb ... 197s Unpacking r-cran-rtsne (0.17-1) ... 197s Selecting previously unselected package r-cran-stringi. 197s Preparing to unpack .../185-r-cran-stringi_1.8.4-1build1_amd64.deb ... 197s Unpacking r-cran-stringi (1.8.4-1build1) ... 197s Selecting previously unselected package r-cran-stringr. 197s Preparing to unpack .../186-r-cran-stringr_1.5.1-1_all.deb ... 197s Unpacking r-cran-stringr (1.5.1-1) ... 197s Selecting previously unselected package r-cran-reshape2. 197s Preparing to unpack .../187-r-cran-reshape2_1.4.4-2build1_amd64.deb ... 197s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 197s Selecting previously unselected package r-cran-leidenbase. 197s Preparing to unpack .../188-r-cran-leidenbase_0.1.27-1_amd64.deb ... 197s Unpacking r-cran-leidenbase (0.1.27-1) ... 197s Selecting previously unselected package r-cran-generics. 197s Preparing to unpack .../189-r-cran-generics_0.1.3-1_all.deb ... 197s Unpacking r-cran-generics (0.1.3-1) ... 197s Selecting previously unselected package r-cran-tidyselect. 197s Preparing to unpack .../190-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 197s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 197s Selecting previously unselected package r-cran-dplyr. 197s Preparing to unpack .../191-r-cran-dplyr_1.1.4-4_amd64.deb ... 197s Unpacking r-cran-dplyr (1.1.4-4) ... 197s Selecting previously unselected package r-cran-pheatmap. 197s Preparing to unpack .../192-r-cran-pheatmap_1.0.12-2build1_all.deb ... 197s Unpacking r-cran-pheatmap (1.0.12-2build1) ... 197s Selecting previously unselected package r-cran-proxy. 197s Preparing to unpack .../193-r-cran-proxy_0.4-27-1_amd64.deb ... 197s Unpacking r-cran-proxy (0.4-27-1) ... 197s Selecting previously unselected package r-cran-slam. 197s Preparing to unpack .../194-r-cran-slam_0.1-55-1_amd64.deb ... 197s Unpacking r-cran-slam (0.1-55-1) ... 197s Selecting previously unselected package r-cran-gridextra. 197s Preparing to unpack .../195-r-cran-gridextra_2.3-3build1_all.deb ... 197s Unpacking r-cran-gridextra (2.3-3build1) ... 197s Selecting previously unselected package r-cran-viridis. 197s Preparing to unpack .../196-r-cran-viridis_0.6.5-1_all.deb ... 197s Unpacking r-cran-viridis (0.6.5-1) ... 197s Selecting previously unselected package r-cran-rann. 197s Preparing to unpack .../197-r-cran-rann_2.6.2-1_amd64.deb ... 197s Unpacking r-cran-rann (2.6.2-1) ... 198s Selecting previously unselected package r-bioc-monocle. 198s Preparing to unpack .../198-r-bioc-monocle_2.34.0-2_amd64.deb ... 198s Unpacking r-bioc-monocle (2.34.0-2) ... 198s Selecting previously unselected package r-cran-survival. 198s Preparing to unpack .../199-r-cran-survival_3.8-3-1_amd64.deb ... 198s Unpacking r-cran-survival (3.8-3-1) ... 198s Selecting previously unselected package r-bioc-multtest. 198s Preparing to unpack .../200-r-bioc-multtest_2.62.0-2_amd64.deb ... 198s Unpacking r-bioc-multtest (2.62.0-2) ... 198s Selecting previously unselected package r-cran-rjson. 198s Preparing to unpack .../201-r-cran-rjson_0.2.23-1_amd64.deb ... 198s Unpacking r-cran-rjson (0.2.23-1) ... 198s Selecting previously unselected package r-cran-yaml. 198s Preparing to unpack .../202-r-cran-yaml_2.3.10-1_amd64.deb ... 198s Unpacking r-cran-yaml (2.3.10-1) ... 198s Selecting previously unselected package r-cran-restfulr. 198s Preparing to unpack .../203-r-cran-restfulr_0.0.15-1_amd64.deb ... 198s Unpacking r-cran-restfulr (0.0.15-1) ... 198s Selecting previously unselected package r-bioc-rtracklayer. 198s Preparing to unpack .../204-r-bioc-rtracklayer_1.66.0-2_amd64.deb ... 198s Unpacking r-bioc-rtracklayer (1.66.0-2) ... 198s Selecting previously unselected package r-bioc-singlecellexperiment. 198s Preparing to unpack .../205-r-bioc-singlecellexperiment_1.28.1+ds-2_all.deb ... 198s Unpacking r-bioc-singlecellexperiment (1.28.1+ds-2) ... 198s Selecting previously unselected package r-cran-digest. 198s Preparing to unpack .../206-r-cran-digest_0.6.37-1_amd64.deb ... 198s Unpacking r-cran-digest (0.6.37-1) ... 198s Selecting previously unselected package r-cran-ape. 198s Preparing to unpack .../207-r-cran-ape_5.8-1_amd64.deb ... 198s Unpacking r-cran-ape (5.8-1) ... 198s Selecting previously unselected package r-cran-base64enc. 198s Preparing to unpack .../208-r-cran-base64enc_0.1-3-3_amd64.deb ... 198s Unpacking r-cran-base64enc (0.1-3-3) ... 198s Selecting previously unselected package r-cran-beeswarm. 198s Preparing to unpack .../209-r-cran-beeswarm_0.4.0-1_amd64.deb ... 198s Unpacking r-cran-beeswarm (0.4.0-1) ... 198s Selecting previously unselected package r-cran-bit. 198s Preparing to unpack .../210-r-cran-bit_4.0.5-1_amd64.deb ... 198s Unpacking r-cran-bit (4.0.5-1) ... 198s Selecting previously unselected package r-cran-bit64. 198s Preparing to unpack .../211-r-cran-bit64_4.0.5-1_amd64.deb ... 198s Unpacking r-cran-bit64 (4.0.5-1) ... 198s Selecting previously unselected package r-cran-brio. 198s Preparing to unpack .../212-r-cran-brio_1.1.5-1_amd64.deb ... 198s Unpacking r-cran-brio (1.1.5-1) ... 198s Selecting previously unselected package r-cran-fastmap. 198s Preparing to unpack .../213-r-cran-fastmap_1.2.0-1_amd64.deb ... 198s Unpacking r-cran-fastmap (1.2.0-1) ... 198s Selecting previously unselected package r-cran-cachem. 198s Preparing to unpack .../214-r-cran-cachem_1.1.0-1_amd64.deb ... 198s Unpacking r-cran-cachem (1.1.0-1) ... 198s Selecting previously unselected package r-cran-htmltools. 198s Preparing to unpack .../215-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 198s Unpacking r-cran-htmltools (0.5.8.1-1) ... 198s Selecting previously unselected package r-cran-jquerylib. 198s Preparing to unpack .../216-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 198s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 198s Selecting previously unselected package r-cran-memoise. 198s Preparing to unpack .../217-r-cran-memoise_2.0.1-1_all.deb ... 198s Unpacking r-cran-memoise (2.0.1-1) ... 198s Selecting previously unselected package r-cran-fs. 198s Preparing to unpack .../218-r-cran-fs_1.6.4+dfsg-1_amd64.deb ... 198s Unpacking r-cran-fs (1.6.4+dfsg-1) ... 198s Selecting previously unselected package r-cran-rappdirs. 198s Preparing to unpack .../219-r-cran-rappdirs_0.3.3-1_amd64.deb ... 198s Unpacking r-cran-rappdirs (0.3.3-1) ... 198s Selecting previously unselected package r-cran-sass. 198s Preparing to unpack .../220-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 198s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 198s Selecting previously unselected package r-cran-bslib. 198s Preparing to unpack .../221-r-cran-bslib_0.7.0+dfsg-1_all.deb ... 198s Unpacking r-cran-bslib (0.7.0+dfsg-1) ... 199s Selecting previously unselected package r-cran-cairo. 199s Preparing to unpack .../222-r-cran-cairo_1.6-2-1_amd64.deb ... 199s Unpacking r-cran-cairo (1.6-2-1) ... 199s Selecting previously unselected package r-cran-ps. 199s Preparing to unpack .../223-r-cran-ps_1.8.0-1_amd64.deb ... 199s Unpacking r-cran-ps (1.8.0-1) ... 199s Selecting previously unselected package r-cran-processx. 199s Preparing to unpack .../224-r-cran-processx_3.8.4-1_amd64.deb ... 199s Unpacking r-cran-processx (3.8.4-1) ... 199s Selecting previously unselected package r-cran-callr. 199s Preparing to unpack .../225-r-cran-callr_3.7.6-1_all.deb ... 199s Unpacking r-cran-callr (3.7.6-1) ... 199s Selecting previously unselected package r-cran-class. 199s Preparing to unpack .../226-r-cran-class_7.3-23-1_amd64.deb ... 199s Unpacking r-cran-class (7.3-23-1) ... 199s Selecting previously unselected package r-cran-e1071. 199s Preparing to unpack .../227-r-cran-e1071_1.7-16-1_amd64.deb ... 199s Unpacking r-cran-e1071 (1.7-16-1) ... 199s Selecting previously unselected package r-cran-iterators. 199s Preparing to unpack .../228-r-cran-iterators_1.0.14-1_all.deb ... 199s Unpacking r-cran-iterators (1.0.14-1) ... 199s Selecting previously unselected package r-cran-foreach. 199s Preparing to unpack .../229-r-cran-foreach_1.5.2-1_all.deb ... 199s Unpacking r-cran-foreach (1.5.2-1) ... 199s Selecting previously unselected package r-cran-data.table. 199s Preparing to unpack .../230-r-cran-data.table_1.16.4+dfsg-1_amd64.deb ... 199s Unpacking r-cran-data.table (1.16.4+dfsg-1) ... 199s Selecting previously unselected package r-cran-modelmetrics. 199s Preparing to unpack .../231-r-cran-modelmetrics_1.2.2.2-1build1_amd64.deb ... 199s Unpacking r-cran-modelmetrics (1.2.2.2-1build1) ... 199s Selecting previously unselected package r-cran-proc. 199s Preparing to unpack .../232-r-cran-proc_1.18.5-1_amd64.deb ... 199s Unpacking r-cran-proc (1.18.5-1) ... 199s Selecting previously unselected package r-cran-tzdb. 199s Preparing to unpack .../233-r-cran-tzdb_0.4.0-2_amd64.deb ... 199s Unpacking r-cran-tzdb (0.4.0-2) ... 199s Selecting previously unselected package r-cran-clock. 199s Preparing to unpack .../234-r-cran-clock_0.7.1-1_amd64.deb ... 199s Unpacking r-cran-clock (0.7.1-1) ... 199s Selecting previously unselected package r-cran-gower. 199s Preparing to unpack .../235-r-cran-gower_1.0.1-1_amd64.deb ... 199s Unpacking r-cran-gower (1.0.1-1) ... 199s Selecting previously unselected package r-cran-hardhat. 199s Preparing to unpack .../236-r-cran-hardhat_1.4.0+dfsg-1_all.deb ... 199s Unpacking r-cran-hardhat (1.4.0+dfsg-1) ... 199s Selecting previously unselected package r-cran-rpart. 199s Preparing to unpack .../237-r-cran-rpart_4.1.24-1_amd64.deb ... 199s Unpacking r-cran-rpart (4.1.24-1) ... 199s Selecting previously unselected package r-cran-nnet. 199s Preparing to unpack .../238-r-cran-nnet_7.3-20-1_amd64.deb ... 199s Unpacking r-cran-nnet (7.3-20-1) ... 199s Selecting previously unselected package r-cran-shape. 199s Preparing to unpack .../239-r-cran-shape_1.4.6.1-1_all.deb ... 199s Unpacking r-cran-shape (1.4.6.1-1) ... 199s Selecting previously unselected package r-cran-diagram. 199s Preparing to unpack .../240-r-cran-diagram_1.6.5-2_all.deb ... 199s Unpacking r-cran-diagram (1.6.5-2) ... 199s Selecting previously unselected package r-cran-kernsmooth. 199s Preparing to unpack .../241-r-cran-kernsmooth_2.23-26-1_amd64.deb ... 199s Unpacking r-cran-kernsmooth (2.23-26-1) ... 199s Selecting previously unselected package r-cran-globals. 199s Preparing to unpack .../242-r-cran-globals_0.16.3-1_all.deb ... 199s Unpacking r-cran-globals (0.16.3-1) ... 199s Selecting previously unselected package r-cran-listenv. 199s Preparing to unpack .../243-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 199s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 199s Selecting previously unselected package r-cran-parallelly. 199s Preparing to unpack .../244-r-cran-parallelly_1.38.0-1_amd64.deb ... 199s Unpacking r-cran-parallelly (1.38.0-1) ... 199s Selecting previously unselected package r-cran-future. 199s Preparing to unpack .../245-r-cran-future_1.34.0+dfsg-1_all.deb ... 199s Unpacking r-cran-future (1.34.0+dfsg-1) ... 199s Selecting previously unselected package r-cran-future.apply. 199s Preparing to unpack .../246-r-cran-future.apply_1.11.2+dfsg-1_all.deb ... 199s Unpacking r-cran-future.apply (1.11.2+dfsg-1) ... 199s Selecting previously unselected package r-cran-numderiv. 200s Preparing to unpack .../247-r-cran-numderiv_2016.8-1.1-3_all.deb ... 200s Unpacking r-cran-numderiv (2016.8-1.1-3) ... 200s Selecting previously unselected package r-cran-progressr. 200s Preparing to unpack .../248-r-cran-progressr_0.14.0-1_all.deb ... 200s Unpacking r-cran-progressr (0.14.0-1) ... 200s Selecting previously unselected package r-cran-squarem. 200s Preparing to unpack .../249-r-cran-squarem_2021.1-1_all.deb ... 200s Unpacking r-cran-squarem (2021.1-1) ... 200s Selecting previously unselected package r-cran-lava. 200s Preparing to unpack .../250-r-cran-lava_1.7.3+dfsg-1_all.deb ... 200s Unpacking r-cran-lava (1.7.3+dfsg-1) ... 200s Selecting previously unselected package r-cran-prodlim. 200s Preparing to unpack .../251-r-cran-prodlim_2024.06.25-1_amd64.deb ... 200s Unpacking r-cran-prodlim (2024.06.25-1) ... 200s Selecting previously unselected package r-cran-ipred. 200s Preparing to unpack .../252-r-cran-ipred_0.9-15-1_amd64.deb ... 200s Unpacking r-cran-ipred (0.9-15-1) ... 200s Selecting previously unselected package r-cran-timechange. 200s Preparing to unpack .../253-r-cran-timechange_0.3.0-1_amd64.deb ... 200s Unpacking r-cran-timechange (0.3.0-1) ... 200s Selecting previously unselected package r-cran-lubridate. 200s Preparing to unpack .../254-r-cran-lubridate_1.9.3+dfsg-1_amd64.deb ... 200s Unpacking r-cran-lubridate (1.9.3+dfsg-1) ... 200s Selecting previously unselected package r-cran-purrr. 200s Preparing to unpack .../255-r-cran-purrr_1.0.2-1_amd64.deb ... 200s Unpacking r-cran-purrr (1.0.2-1) ... 200s Selecting previously unselected package r-cran-tidyr. 200s Preparing to unpack .../256-r-cran-tidyr_1.3.1-1_amd64.deb ... 200s Unpacking r-cran-tidyr (1.3.1-1) ... 200s Selecting previously unselected package r-cran-timedate. 200s Preparing to unpack .../257-r-cran-timedate_4041.110-1_amd64.deb ... 200s Unpacking r-cran-timedate (4041.110-1) ... 200s Selecting previously unselected package r-cran-recipes. 200s Preparing to unpack .../258-r-cran-recipes_1.1.0+dfsg-1_all.deb ... 200s Unpacking r-cran-recipes (1.1.0+dfsg-1) ... 200s Selecting previously unselected package r-cran-caret. 200s Preparing to unpack .../259-r-cran-caret_6.0-94+dfsg-1_amd64.deb ... 200s Unpacking r-cran-caret (6.0-94+dfsg-1) ... 200s Selecting previously unselected package r-cran-catools. 200s Preparing to unpack .../260-r-cran-catools_1.18.2-1_amd64.deb ... 200s Unpacking r-cran-catools (1.18.2-1) ... 200s Selecting previously unselected package r-cran-evaluate. 200s Preparing to unpack .../261-r-cran-evaluate_1.0.0-1_all.deb ... 200s Unpacking r-cran-evaluate (1.0.0-1) ... 200s Selecting previously unselected package r-cran-xfun. 200s Preparing to unpack .../262-r-cran-xfun_0.49+dfsg-1_amd64.deb ... 200s Unpacking r-cran-xfun (0.49+dfsg-1) ... 200s Selecting previously unselected package r-cran-highr. 200s Preparing to unpack .../263-r-cran-highr_0.11+dfsg-1_all.deb ... 200s Unpacking r-cran-highr (0.11+dfsg-1) ... 200s Selecting previously unselected package libjs-mathjax. 200s Preparing to unpack .../264-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 200s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 201s Selecting previously unselected package r-cran-knitr. 201s Preparing to unpack .../265-r-cran-knitr_1.49+dfsg-1_all.deb ... 201s Unpacking r-cran-knitr (1.49+dfsg-1) ... 201s Selecting previously unselected package r-cran-fontawesome. 201s Preparing to unpack .../266-r-cran-fontawesome_0.5.2-1_all.deb ... 201s Unpacking r-cran-fontawesome (0.5.2-1) ... 201s Selecting previously unselected package r-cran-tinytex. 201s Preparing to unpack .../267-r-cran-tinytex_0.53-1_all.deb ... 201s Unpacking r-cran-tinytex (0.53-1) ... 201s Selecting previously unselected package libjs-modernizr. 201s Preparing to unpack .../268-libjs-modernizr_3.13.0-0.1_all.deb ... 201s Unpacking libjs-modernizr (3.13.0-0.1) ... 201s Selecting previously unselected package r-cran-later. 201s Preparing to unpack .../269-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 201s Unpacking r-cran-later (1.3.2+dfsg-1) ... 201s Selecting previously unselected package r-cran-promises. 201s Preparing to unpack .../270-r-cran-promises_1.3.0+dfsg-1_amd64.deb ... 201s Unpacking r-cran-promises (1.3.0+dfsg-1) ... 201s Selecting previously unselected package r-cran-httpuv. 201s Preparing to unpack .../271-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 201s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 201s Selecting previously unselected package r-cran-xtable. 201s Preparing to unpack .../272-r-cran-xtable_1%3a1.8-4-2_all.deb ... 201s Unpacking r-cran-xtable (1:1.8-4-2) ... 201s Selecting previously unselected package r-cran-sourcetools. 201s Preparing to unpack .../273-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 201s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 201s Selecting previously unselected package r-cran-commonmark. 201s Preparing to unpack .../274-r-cran-commonmark_1.9.2-2_amd64.deb ... 201s Unpacking r-cran-commonmark (1.9.2-2) ... 201s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 201s Preparing to unpack .../275-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 201s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 201s Selecting previously unselected package r-cran-shiny. 201s Preparing to unpack .../276-r-cran-shiny_1.9.1+dfsg-1_all.deb ... 201s Unpacking r-cran-shiny (1.9.1+dfsg-1) ... 201s Selecting previously unselected package r-cran-rmarkdown. 201s Preparing to unpack .../277-r-cran-rmarkdown_2.28+dfsg-1_all.deb ... 201s Unpacking r-cran-rmarkdown (2.28+dfsg-1) ... 202s Selecting previously unselected package r-cran-htmlwidgets. 202s Preparing to unpack .../278-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 202s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 202s Selecting previously unselected package r-cran-miniui. 202s Preparing to unpack .../279-r-cran-miniui_0.1.1.1-3build1_all.deb ... 202s Unpacking r-cran-miniui (0.1.1.1-3build1) ... 202s Selecting previously unselected package r-cran-shinyjs. 202s Preparing to unpack .../280-r-cran-shinyjs_2.1.0-1_all.deb ... 202s Unpacking r-cran-shinyjs (2.1.0-1) ... 202s Selecting previously unselected package r-cran-colourpicker. 202s Preparing to unpack .../281-r-cran-colourpicker_1.3.0+dfsg-1_all.deb ... 202s Unpacking r-cran-colourpicker (1.3.0+dfsg-1) ... 202s Selecting previously unselected package r-cran-conquer. 202s Preparing to unpack .../282-r-cran-conquer_1.3.3-1_amd64.deb ... 202s Unpacking r-cran-conquer (1.3.3-1) ... 202s Selecting previously unselected package r-cran-cowplot. 202s Preparing to unpack .../283-r-cran-cowplot_1.1.3+dfsg-1_all.deb ... 202s Unpacking r-cran-cowplot (1.1.3+dfsg-1) ... 202s Selecting previously unselected package r-cran-lazyeval. 202s Preparing to unpack .../284-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 202s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 202s Selecting previously unselected package r-cran-crosstalk. 202s Preparing to unpack .../285-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 202s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 202s Selecting previously unselected package r-cran-deldir. 202s Preparing to unpack .../286-r-cran-deldir_2.0-4-1build1_amd64.deb ... 202s Unpacking r-cran-deldir (2.0-4-1build1) ... 202s Selecting previously unselected package r-cran-deoptimr. 202s Preparing to unpack .../287-r-cran-deoptimr_1.1-3-1-1_all.deb ... 202s Unpacking r-cran-deoptimr (1.1-3-1-1) ... 202s Selecting previously unselected package r-cran-desc. 202s Preparing to unpack .../288-r-cran-desc_1.4.3-1_all.deb ... 202s Unpacking r-cran-desc (1.4.3-1) ... 202s Selecting previously unselected package r-cran-diffobj. 202s Preparing to unpack .../289-r-cran-diffobj_0.3.5-1_amd64.deb ... 202s Unpacking r-cran-diffobj (0.3.5-1) ... 202s Selecting previously unselected package r-cran-dotcall64. 202s Preparing to unpack .../290-r-cran-dotcall64_1.1-1-1_amd64.deb ... 202s Unpacking r-cran-dotcall64 (1.1-1-1) ... 202s Selecting previously unselected package r-cran-sitmo. 202s Preparing to unpack .../291-r-cran-sitmo_2.0.2-1_amd64.deb ... 202s Unpacking r-cran-sitmo (2.0.2-1) ... 202s Selecting previously unselected package r-cran-dqrng. 202s Preparing to unpack .../292-r-cran-dqrng_0.3.2+dfsg-1_amd64.deb ... 202s Unpacking r-cran-dqrng (0.3.2+dfsg-1) ... 202s Selecting previously unselected package r-cran-fastdummies. 202s Preparing to unpack .../293-r-cran-fastdummies_1.7.4-1_all.deb ... 202s Unpacking r-cran-fastdummies (1.7.4-1) ... 202s Selecting previously unselected package r-cran-fitdistrplus. 202s Preparing to unpack .../294-r-cran-fitdistrplus_1.2-1-1_all.deb ... 202s Unpacking r-cran-fitdistrplus (1.2-1-1) ... 202s Selecting previously unselected package r-cran-fnn. 202s Preparing to unpack .../295-r-cran-fnn_1.1.4.1-1_amd64.deb ... 202s Unpacking r-cran-fnn (1.1.4.1-1) ... 202s Selecting previously unselected package r-cran-gtools. 202s Preparing to unpack .../296-r-cran-gtools_3.9.5-1_amd64.deb ... 202s Unpacking r-cran-gtools (3.9.5-1) ... 202s Selecting previously unselected package r-cran-gdata. 202s Preparing to unpack .../297-r-cran-gdata_3.0.1-1_all.deb ... 202s Unpacking r-cran-gdata (3.0.1-1) ... 202s Selecting previously unselected package r-cran-vipor. 202s Preparing to unpack .../298-r-cran-vipor_0.4.7-1_all.deb ... 202s Unpacking r-cran-vipor (0.4.7-1) ... 202s Selecting previously unselected package r-cran-ggbeeswarm. 202s Preparing to unpack .../299-r-cran-ggbeeswarm_0.7.2-1_all.deb ... 202s Unpacking r-cran-ggbeeswarm (0.7.2-1) ... 202s Selecting previously unselected package r-cran-png. 202s Preparing to unpack .../300-r-cran-png_0.1-8-1build2_amd64.deb ... 202s Unpacking r-cran-png (0.1-8-1build2) ... 202s Selecting previously unselected package r-cran-systemfonts. 202s Preparing to unpack .../301-r-cran-systemfonts_1.1.0-1_amd64.deb ... 202s Unpacking r-cran-systemfonts (1.1.0-1) ... 202s Selecting previously unselected package r-cran-textshaping. 202s Preparing to unpack .../302-r-cran-textshaping_0.3.7-2_amd64.deb ... 202s Unpacking r-cran-textshaping (0.3.7-2) ... 203s Selecting previously unselected package r-cran-ragg. 203s Preparing to unpack .../303-r-cran-ragg_1.3.3-1_amd64.deb ... 203s Unpacking r-cran-ragg (1.3.3-1) ... 203s Selecting previously unselected package r-cran-ggrastr. 203s Preparing to unpack .../304-r-cran-ggrastr_1.0.2-1_all.deb ... 203s Unpacking r-cran-ggrastr (1.0.2-1) ... 203s Selecting previously unselected package r-cran-ggrepel. 203s Preparing to unpack .../305-r-cran-ggrepel_0.9.5-2_amd64.deb ... 203s Unpacking r-cran-ggrepel (0.9.5-2) ... 203s Selecting previously unselected package r-cran-ggridges. 203s Preparing to unpack .../306-r-cran-ggridges_0.5.6-1_all.deb ... 203s Unpacking r-cran-ggridges (0.5.6-1) ... 203s Selecting previously unselected package r-cran-goftest. 203s Preparing to unpack .../307-r-cran-goftest_1.2-3-1_amd64.deb ... 203s Unpacking r-cran-goftest (1.2-3-1) ... 203s Selecting previously unselected package r-cran-gplots. 203s Preparing to unpack .../308-r-cran-gplots_3.2.0-1_all.deb ... 203s Unpacking r-cran-gplots (3.2.0-1) ... 203s Selecting previously unselected package r-cran-hdf5r. 203s Preparing to unpack .../309-r-cran-hdf5r_1.3.11+dfsg-1_amd64.deb ... 203s Unpacking r-cran-hdf5r (1.3.11+dfsg-1) ... 203s Selecting previously unselected package r-cran-rprojroot. 203s Preparing to unpack .../310-r-cran-rprojroot_2.0.4-1_all.deb ... 203s Unpacking r-cran-rprojroot (2.0.4-1) ... 203s Selecting previously unselected package r-cran-here. 203s Preparing to unpack .../311-r-cran-here_1.0.1-2_all.deb ... 203s Unpacking r-cran-here (1.0.1-2) ... 203s Selecting previously unselected package r-cran-ica. 203s Preparing to unpack .../312-r-cran-ica_1.0-3-1_all.deb ... 203s Unpacking r-cran-ica (1.0-3-1) ... 203s Selecting previously unselected package r-cran-kernlab. 203s Preparing to unpack .../313-r-cran-kernlab_0.9-33-1_amd64.deb ... 203s Unpacking r-cran-kernlab (0.9-33-1) ... 203s Selecting previously unselected package r-cran-rcpptoml. 203s Preparing to unpack .../314-r-cran-rcpptoml_0.2.2+dfsg-1_amd64.deb ... 203s Unpacking r-cran-rcpptoml (0.2.2+dfsg-1) ... 203s Selecting previously unselected package r-cran-reticulate. 203s Preparing to unpack .../315-r-cran-reticulate_1.39.0+dfsg-1_amd64.deb ... 203s Unpacking r-cran-reticulate (1.39.0+dfsg-1) ... 203s Selecting previously unselected package r-cran-leiden. 203s Preparing to unpack .../316-r-cran-leiden_0.4.3.1+dfsg-1_all.deb ... 203s Unpacking r-cran-leiden (0.4.3.1+dfsg-1) ... 203s Selecting previously unselected package r-cran-zoo. 203s Preparing to unpack .../317-r-cran-zoo_1.8-12-2_amd64.deb ... 203s Unpacking r-cran-zoo (1.8-12-2) ... 203s Selecting previously unselected package r-cran-lmtest. 203s Preparing to unpack .../318-r-cran-lmtest_0.9.40-1_amd64.deb ... 203s Unpacking r-cran-lmtest (0.9.40-1) ... 203s Selecting previously unselected package r-cran-mathjaxr. 203s Preparing to unpack .../319-r-cran-mathjaxr_1.6-0-1_all.deb ... 203s Unpacking r-cran-mathjaxr (1.6-0-1) ... 203s Selecting previously unselected package r-cran-matrixmodels. 203s Preparing to unpack .../320-r-cran-matrixmodels_0.5-3-1_all.deb ... 203s Unpacking r-cran-matrixmodels (0.5-3-1) ... 203s Selecting previously unselected package r-cran-rbibutils. 203s Preparing to unpack .../321-r-cran-rbibutils_2.3-1_amd64.deb ... 203s Unpacking r-cran-rbibutils (2.3-1) ... 203s Selecting previously unselected package r-cran-rdpack. 203s Preparing to unpack .../322-r-cran-rdpack_2.6.2-1_all.deb ... 203s Unpacking r-cran-rdpack (2.6.2-1) ... 203s Selecting previously unselected package r-cran-mnormt. 203s Preparing to unpack .../323-r-cran-mnormt_2.1.1-2_amd64.deb ... 203s Unpacking r-cran-mnormt (2.1.1-2) ... 203s Selecting previously unselected package r-cran-sparsem. 203s Preparing to unpack .../324-r-cran-sparsem_1.84-2-1_amd64.deb ... 203s Unpacking r-cran-sparsem (1.84-2-1) ... 203s Selecting previously unselected package r-cran-quantreg. 203s Preparing to unpack .../325-r-cran-quantreg_5.99.1-1_amd64.deb ... 203s Unpacking r-cran-quantreg (5.99.1-1) ... 203s Selecting previously unselected package r-cran-sn. 203s Preparing to unpack .../326-r-cran-sn_2.1.1-2_all.deb ... 203s Unpacking r-cran-sn (2.1.1-2) ... 203s Selecting previously unselected package r-cran-mvtnorm. 203s Preparing to unpack .../327-r-cran-mvtnorm_1.3-3-1_amd64.deb ... 203s Unpacking r-cran-mvtnorm (1.3-3-1) ... 204s Selecting previously unselected package r-cran-tfisher. 204s Preparing to unpack .../328-r-cran-tfisher_0.2.0-3_all.deb ... 204s Unpacking r-cran-tfisher (0.2.0-3) ... 204s Selecting previously unselected package r-cran-plotrix. 204s Preparing to unpack .../329-r-cran-plotrix_3.8-4-1_all.deb ... 204s Unpacking r-cran-plotrix (3.8-4-1) ... 204s Selecting previously unselected package r-cran-th.data. 204s Preparing to unpack .../330-r-cran-th.data_1.1-2-2_all.deb ... 204s Unpacking r-cran-th.data (1.1-2-2) ... 204s Selecting previously unselected package r-cran-sandwich. 204s Preparing to unpack .../331-r-cran-sandwich_3.1-1-1_all.deb ... 204s Unpacking r-cran-sandwich (3.1-1-1) ... 204s Selecting previously unselected package r-cran-multcomp. 204s Preparing to unpack .../332-r-cran-multcomp_1.4-26-2_all.deb ... 204s Unpacking r-cran-multcomp (1.4-26-2) ... 204s Selecting previously unselected package r-cran-mutoss. 204s Preparing to unpack .../333-r-cran-mutoss_0.1-13-1_all.deb ... 204s Unpacking r-cran-mutoss (0.1-13-1) ... 204s Selecting previously unselected package r-cran-robustbase. 204s Preparing to unpack .../334-r-cran-robustbase_0.99-4-1-1_amd64.deb ... 204s Unpacking r-cran-robustbase (0.99-4-1-1) ... 204s Selecting previously unselected package r-cran-qqconf. 204s Preparing to unpack .../335-r-cran-qqconf_1.3.2+dfsg-1_amd64.deb ... 204s Unpacking r-cran-qqconf (1.3.2+dfsg-1) ... 204s Selecting previously unselected package r-cran-metap. 204s Preparing to unpack .../336-r-cran-metap_1.11-1_all.deb ... 204s Unpacking r-cran-metap (1.11-1) ... 204s Selecting previously unselected package r-cran-plotly. 204s Preparing to unpack .../337-r-cran-plotly_4.10.4+dfsg-2_all.deb ... 204s Unpacking r-cran-plotly (4.10.4+dfsg-2) ... 204s Selecting previously unselected package r-cran-segmented. 204s Preparing to unpack .../338-r-cran-segmented_2.1-3-1_all.deb ... 204s Unpacking r-cran-segmented (2.1-3-1) ... 204s Selecting previously unselected package r-cran-mixtools. 204s Preparing to unpack .../339-r-cran-mixtools_2.0.0-1_amd64.deb ... 204s Unpacking r-cran-mixtools (2.0.0-1) ... 204s Selecting previously unselected package r-cran-patchwork. 204s Preparing to unpack .../340-r-cran-patchwork_1.3.0-1_all.deb ... 204s Unpacking r-cran-patchwork (1.3.0-1) ... 204s Selecting previously unselected package r-cran-pbapply. 204s Preparing to unpack .../341-r-cran-pbapply_1.7-2-1_all.deb ... 204s Unpacking r-cran-pbapply (1.7-2-1) ... 204s Selecting previously unselected package r-cran-pkgbuild. 204s Preparing to unpack .../342-r-cran-pkgbuild_1.4.4-1_all.deb ... 204s Unpacking r-cran-pkgbuild (1.4.4-1) ... 204s Selecting previously unselected package r-cran-pkgload. 204s Preparing to unpack .../343-r-cran-pkgload_1.4.0-1_all.deb ... 204s Unpacking r-cran-pkgload (1.4.0-1) ... 204s Selecting previously unselected package r-cran-polyclip. 204s Preparing to unpack .../344-r-cran-polyclip_1.10-7-1_amd64.deb ... 204s Unpacking r-cran-polyclip (1.10-7-1) ... 204s Selecting previously unselected package r-cran-praise. 204s Preparing to unpack .../345-r-cran-praise_1.0.0-4build1_all.deb ... 204s Unpacking r-cran-praise (1.0.0-4build1) ... 204s Selecting previously unselected package r-cran-r.methodss3. 204s Preparing to unpack .../346-r-cran-r.methodss3_1.8.2-1_all.deb ... 204s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 204s Selecting previously unselected package r-cran-r.oo. 204s Preparing to unpack .../347-r-cran-r.oo_1.26.0-1_all.deb ... 204s Unpacking r-cran-r.oo (1.26.0-1) ... 204s Selecting previously unselected package r-cran-r.utils. 204s Preparing to unpack .../348-r-cran-r.utils_2.12.3-1_all.deb ... 204s Unpacking r-cran-r.utils (2.12.3-1) ... 205s Selecting previously unselected package r-cran-rcppannoy. 205s Preparing to unpack .../349-r-cran-rcppannoy_0.0.22-1_amd64.deb ... 205s Unpacking r-cran-rcppannoy (0.0.22-1) ... 205s Selecting previously unselected package r-cran-rcpphnsw. 205s Preparing to unpack .../350-r-cran-rcpphnsw_0.5.0+ds-1_amd64.deb ... 205s Unpacking r-cran-rcpphnsw (0.5.0+ds-1) ... 205s Selecting previously unselected package r-cran-rcppprogress. 205s Preparing to unpack .../351-r-cran-rcppprogress_0.4.2-2build1_all.deb ... 205s Unpacking r-cran-rcppprogress (0.4.2-2build1) ... 205s Selecting previously unselected package r-cran-rocr. 205s Preparing to unpack .../352-r-cran-rocr_1.0-11-3_all.deb ... 205s Unpacking r-cran-rocr (1.0-11-3) ... 205s Selecting previously unselected package r-cran-rspectra. 205s Preparing to unpack .../353-r-cran-rspectra_0.16-2-1_amd64.deb ... 205s Unpacking r-cran-rspectra (0.16-2-1) ... 205s Selecting previously unselected package r-cran-rsvd. 205s Preparing to unpack .../354-r-cran-rsvd_1.0.5-1_all.deb ... 205s Unpacking r-cran-rsvd (1.0.5-1) ... 205s Selecting previously unselected package r-cran-scattermore. 205s Preparing to unpack .../355-r-cran-scattermore_1.2-1_amd64.deb ... 205s Unpacking r-cran-scattermore (1.2-1) ... 205s Selecting previously unselected package r-cran-sctransform. 205s Preparing to unpack .../356-r-cran-sctransform_0.4.1-1_amd64.deb ... 205s Unpacking r-cran-sctransform (0.4.1-1) ... 205s Selecting previously unselected package r-cran-sp. 205s Preparing to unpack .../357-r-cran-sp_1%3a2.1-4+dfsg-1_amd64.deb ... 205s Unpacking r-cran-sp (1:2.1-4+dfsg-1) ... 205s Selecting previously unselected package r-cran-spam. 205s Preparing to unpack .../358-r-cran-spam_2.11-0-1_amd64.deb ... 205s Unpacking r-cran-spam (2.11-0-1) ... 205s Selecting previously unselected package r-cran-seuratobject. 205s Preparing to unpack .../359-r-cran-seuratobject_5.0.2-1_amd64.deb ... 205s Unpacking r-cran-seuratobject (5.0.2-1) ... 205s Selecting previously unselected package r-cran-spatstat.utils. 205s Preparing to unpack .../360-r-cran-spatstat.utils_3.1-0-1_amd64.deb ... 205s Unpacking r-cran-spatstat.utils (3.1-0-1) ... 205s Selecting previously unselected package r-cran-spatstat.data. 205s Preparing to unpack .../361-r-cran-spatstat.data_3.1-2-1_all.deb ... 205s Unpacking r-cran-spatstat.data (3.1-2-1) ... 205s Selecting previously unselected package r-cran-spatstat.geom. 205s Preparing to 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r-bioc-genomicalignments (1.42.0-2) ... 209s Setting up r-cran-metap (1.11-1) ... 209s Setting up r-bioc-rtracklayer (1.66.0-2) ... 209s Setting up r-bioc-singlecellexperiment (1.28.1+ds-2) ... 209s Setting up r-cran-plotly (4.10.4+dfsg-2) ... 209s Setting up r-cran-mixtools (2.0.0-1) ... 209s Setting up r-cran-seurat (5.1.0-1) ... 209s Processing triggers for man-db (2.13.0-1) ... 210s Processing triggers for install-info (7.1.1-1) ... 210s Processing triggers for libc-bin (2.40-4ubuntu1) ... 211s autopkgtest [15:11:35]: test run-unit-test: [----------------------- 211s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 211s BEGIN TEST testthat.R 211s 211s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 211s Copyright (C) 2024 The R Foundation for Statistical Computing 211s Platform: x86_64-pc-linux-gnu 211s 211s R is free software and comes with ABSOLUTELY NO WARRANTY. 211s You are welcome to redistribute it under certain conditions. 211s Type 'license()' or 'licence()' for distribution details. 211s 211s R is a collaborative project with many contributors. 211s Type 'contributors()' for more information and 211s 'citation()' on how to cite R or R packages in publications. 211s 211s Type 'demo()' for some demos, 'help()' for on-line help, or 211s 'help.start()' for an HTML browser interface to help. 211s Type 'q()' to quit R. 211s 211s > library(testthat) 211s > library(Seurat) 211s Loading required package: SeuratObject 211s Loading required package: sp 213s ‘SeuratObject’ was built under R 4.4.1 but the current version is 213s 4.4.2; it is recomended that you reinstall ‘SeuratObject’ as the ABI 213s for R may have changed 213s ‘SeuratObject’ was built with package ‘Matrix’ 1.7.0 but the current 213s version is 1.7.1; it is recomended that you reinstall ‘SeuratObject’ as 213s the ABI for ‘Matrix’ may have changed 213s 213s Attaching package: ‘SeuratObject’ 213s 213s The following objects are masked from ‘package:base’: 213s 213s intersect, t 213s 214s Run tests for v5 assay 214s > # 214s > # # Run tests for 'v3' 214s > # message('Run tests for v3 assay') 214s > # options(Seurat.object.assay.version = 'v3') 214s > # test_check("Seurat") 214s > 214s > # Run tests for 'v5' 214s > message('Run tests for v5 assay') 214s > options(Seurat.object.assay.version = 'v5') 214s > test_check("Seurat") 215s | | | 0% | |======================================================================| 100% 263s Performing log-normalization 263s 0% 10 20 30 40 50 60 70 80 90 100% 263s [----|----|----|----|----|----|----|----|----|----| 263s **************************************************| 263s Performing log-normalization 263s 0% 10 20 30 40 50 60 70 80 90 100% 263s [----|----|----|----|----|----|----|----|----|----| 263s **************************************************| 263s Performing log-normalization 263s 0% 10 20 30 40 50 60 70 80 90 100% 263s [----|----|----|----|----|----|----|----|----|----| 263s **************************************************| 270s | | | 0% | |======================================================================| 100% 272s | | | 0% | |======================================================================| 100% 272s | | | 0% | |======================================================================| 100% 295s Performing log-normalization 295s 0% 10 20 30 40 50 60 70 80 90 100% 295s [----|----|----|----|----|----|----|----|----|----| 295s **************************************************| 296s Calculating gene variances 296s 0% 10 20 30 40 50 60 70 80 90 100% 296s [----|----|----|----|----|----|----|----|----|----| 296s **************************************************| 296s Calculating feature variances of standardized and clipped values 296s 0% 10 20 30 40 50 60 70 80 90 100% 296s [----|----|----|----|----|----|----|----|----|----| 296s **************************************************| 296s | | | 0% | |======================================================================| 100% 296s 0% 10 20 30 40 50 60 70 80 90 100% 296s [----|----|----|----|----|----|----|----|----|----| 296s **************************************************| 296s Modularity Optimizer version 1.3.0 by Ludo Waltman and Nees Jan van Eck 296s 296s Number of nodes: 80 296s Number of edges: 2045 296s 296s Running Louvain algorithm... 296s Maximum modularity in 10 random starts: -0.0613 296s Number of communities: 64 296s Elapsed time: 0 seconds 296s Performing log-normalization 296s 0% 10 20 30 40 50 60 70 80 90 100% 296s [----|----|----|----|----|----|----|----|----|----| 296s **************************************************| 297s | | | 0% | |======================================================================| 100% 297s | | | 0% | |======================================================================| 100% 297s | | | 0% | |======================================================================| 100% 299s | | | 0% | |======================================================================| 100% 300s | | | 0% | |======================================================================| 100% 300s [ FAIL 0 | WARN 210 | SKIP 32 | PASS 661 ] 300s 300s ══ Skipped tests (32) ══════════════════════════════════════════════════════════ 301s • arrow cannot be loaded (1): 'test_load_10X.R:179:3' 301s • On CRAN (29): 'test_differential_expression.R:307:3', 301s 'test_differential_expression.R:349:3', 301s 'test_differential_expression.R:446:3', 'test_dimensional_reduction.R:55:3', 301s 'test_integratedata.R:111:3', 'test_integration.R:74:3', 301s 'test_integration.R:105:3', 'test_integration.R:136:3', 301s 'test_integration.R:170:3', 'test_integration.R:202:3', 301s 'test_integration.R:234:3', 'test_integration.R:264:3', 301s 'test_integration.R:306:3', 'test_integration.R:335:3', 301s 'test_integration.R:365:3', 'test_integration5.R:38:3', 301s 'test_integration5.R:219:3', 'test_objects.R:6:3', 301s 'test_preprocessing.R:140:3', 'test_preprocessing.R:158:3', 301s 'test_preprocessing.R:433:3', 'test_preprocessing.R:554:3', 301s 'test_read_mtx.R:4:3', 'test_read_mtx.R:18:3', 'test_transferdata.R:65:3', 301s 'test_transferdata.R:88:3', 'test_transferdata.R:100:3', 301s 'test_transferdata.R:112:3', 'test_transferdata.R:128:3' 301s • sf cannot be loaded (2): 'test_spatial.R:115:3', 'test_spatial.R:266:3' 301s 301s [ FAIL 0 | WARN 210 | SKIP 32 | PASS 661 ] 301s > 301s > 301s > 301s autopkgtest [15:13:05]: test run-unit-test: -----------------------] 302s autopkgtest [15:13:06]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 302s run-unit-test PASS 302s autopkgtest [15:13:06]: test pkg-r-autopkgtest: preparing testbed 490s autopkgtest [15:16:14]: testbed dpkg architecture: amd64 490s autopkgtest [15:16:14]: testbed apt version: 2.9.18 490s autopkgtest [15:16:14]: @@@@@@@@@@@@@@@@@@@@ test bed setup 491s autopkgtest [15:16:15]: testbed release detected to be: plucky 491s autopkgtest [15:16:15]: updating testbed package index (apt update) 492s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 492s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 492s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 492s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 492s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [178 kB] 492s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.1 kB] 492s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 492s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [868 kB] 492s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [331 kB] 492s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [228 kB] 492s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2408 B] 492s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [40.1 kB] 492s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [468 kB] 492s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [1095 kB] 492s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [24.9 kB] 492s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [4444 B] 493s Fetched 3337 kB in 1s (3435 kB/s) 493s Reading package lists... 494s Reading package lists... 494s Building dependency tree... 494s Reading state information... 494s Calculating upgrade... 494s The following packages will be upgraded: 494s libgudev-1.0-0 usb.ids 495s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 495s Need to get 239 kB of archives. 495s After this operation, 0 B of additional disk space will be used. 495s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 usb.ids all 2025.01.14-1 [223 kB] 495s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libgudev-1.0-0 amd64 1:238-6 [15.8 kB] 495s Fetched 239 kB in 0s (498 kB/s) 495s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 495s Preparing to unpack .../usb.ids_2025.01.14-1_all.deb ... 495s Unpacking usb.ids (2025.01.14-1) over (2024.12.04-1) ... 495s Preparing to unpack .../libgudev-1.0-0_1%3a238-6_amd64.deb ... 495s Unpacking libgudev-1.0-0:amd64 (1:238-6) over (1:238-5ubuntu1) ... 496s Setting up usb.ids (2025.01.14-1) ... 496s Setting up libgudev-1.0-0:amd64 (1:238-6) ... 496s Processing triggers for libc-bin (2.40-4ubuntu1) ... 496s Reading package lists... 496s Building dependency tree... 496s Reading state information... 496s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 496s autopkgtest [15:16:20]: upgrading testbed (apt dist-upgrade and autopurge) 496s Reading package lists... 496s Building dependency tree... 496s Reading state information... 497s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 497s Starting 2 pkgProblemResolver with broken count: 0 497s Done 497s Entering ResolveByKeep 497s 498s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 498s Reading package lists... 498s Building dependency tree... 498s Reading state information... 498s Starting pkgProblemResolver with broken count: 0 498s Starting 2 pkgProblemResolver with broken count: 0 498s Done 499s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 501s Reading package lists... 502s Building dependency tree... 502s Reading state information... 502s Starting pkgProblemResolver with broken count: 9 502s Starting 2 pkgProblemResolver with broken count: 9 502s Investigating (0) r-bioc-genomeinfodb:amd64 < none -> 1.40.1+dfsg-1 @un puN Ib > 502s Broken r-bioc-genomeinfodb:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 502s Considering r-bioc-biocgenerics:amd64 46 as a solution to r-bioc-genomeinfodb:amd64 11 502s Re-Instated r-bioc-biocgenerics:amd64 502s Broken r-bioc-genomeinfodb:amd64 Depends on r-bioc-ucsc.utils:amd64 < none | 1.0.0+ds-2 @un uH > (> 1.0.0+ds-1) 502s Considering r-bioc-ucsc.utils:amd64 0 as a solution to r-bioc-genomeinfodb:amd64 11 502s Reinst Failed because of protected r-bioc-biocgenerics:amd64 502s Considering r-bioc-ucsc.utils:amd64 0 as a solution to r-bioc-genomeinfodb:amd64 11 502s Broken r-bioc-genomeinfodb:amd64 Depends on r-bioc-genomeinfodbdata:amd64 < none | 1.2.13-2 @un uH > (>= 1.2.12) 502s Considering r-bioc-genomeinfodbdata:amd64 0 as a solution to r-bioc-genomeinfodb:amd64 11 502s Re-Instated r-bioc-genomeinfodbdata:amd64 502s Investigating (0) r-bioc-genomicranges:amd64 < none -> 1.56.2+dfsg-1 @un puN Ib > 502s Broken r-bioc-genomicranges:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 502s Considering r-bioc-biocgenerics:amd64 11 as a solution to r-bioc-genomicranges:amd64 8 502s Broken r-bioc-genomicranges:amd64 Depends on r-bioc-xvector:amd64 < none | 0.44.0-1 @un uH > (>= 0.29.2) 502s Considering r-bioc-xvector:amd64 0 as a solution to r-bioc-genomicranges:amd64 8 502s Reinst Failed because of protected r-bioc-biocgenerics:amd64 502s Considering r-bioc-xvector:amd64 0 as a solution to r-bioc-genomicranges:amd64 8 502s Investigating (0) r-bioc-biobase:amd64 < none -> 2.64.0-4 @un puN Ib > 502s Broken r-bioc-biobase:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 502s Considering r-bioc-biocgenerics:amd64 11 as a solution to r-bioc-biobase:amd64 7 502s Investigating (0) r-bioc-delayedarray:amd64 < none -> 0.30.1+dfsg-1 @un puN Ib > 502s Broken r-bioc-delayedarray:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 502s Considering r-bioc-biocgenerics:amd64 11 as a solution to r-bioc-delayedarray:amd64 4 502s Broken r-bioc-delayedarray:amd64 Depends on r-bioc-matrixgenerics:amd64 < none | 1.16.0-2 @un uH > (>= 1.16.0) 502s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-delayedarray:amd64 4 502s Reinst Failed because of protected r-bioc-biocgenerics:amd64 502s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-delayedarray:amd64 4 502s Broken r-bioc-delayedarray:amd64 Depends on r-bioc-s4arrays:amd64 < none | 1.4.1+dfsg-1 @un uH > (>= 1.4.1) 502s Considering r-bioc-s4arrays:amd64 0 as a solution to r-bioc-delayedarray:amd64 4 502s Reinst Failed because of protected r-bioc-biocgenerics:amd64 502s Considering r-bioc-s4arrays:amd64 0 as a solution to r-bioc-delayedarray:amd64 4 502s Broken r-bioc-delayedarray:amd64 Depends on r-bioc-sparsearray:amd64 < none | 1.4.8+dfsg-1 @un uH > (>= 1.4.8) 502s Considering r-bioc-sparsearray:amd64 0 as a solution to r-bioc-delayedarray:amd64 4 502s Reinst Failed because of protected r-bioc-biocgenerics:amd64 502s Considering r-bioc-sparsearray:amd64 0 as a solution to r-bioc-delayedarray:amd64 4 502s Investigating (0) r-bioc-summarizedexperiment:amd64 < none -> 1.34.0+dfsg-1 @un puN Ib > 502s Broken r-bioc-summarizedexperiment:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 502s Considering r-bioc-biocgenerics:amd64 11 as a solution to r-bioc-summarizedexperiment:amd64 3 502s Broken r-bioc-summarizedexperiment:amd64 Depends on r-bioc-matrixgenerics:amd64 < none | 1.16.0-2 @un uH > (>= 1.16.0) 502s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-summarizedexperiment:amd64 3 502s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-summarizedexperiment:amd64 3 502s Broken r-bioc-summarizedexperiment:amd64 Depends on r-bioc-s4arrays:amd64 < none | 1.4.1+dfsg-1 @un uH > (>= 1.4.1) 502s Considering r-bioc-s4arrays:amd64 0 as a solution to r-bioc-summarizedexperiment:amd64 3 502s Considering r-bioc-s4arrays:amd64 0 as a solution to r-bioc-summarizedexperiment:amd64 3 502s Investigating (0) r-bioc-rtracklayer:amd64 < none -> 1.64.0-1 @un puN Ib > 502s Broken r-bioc-rtracklayer:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 502s Considering r-bioc-biocgenerics:amd64 11 as a solution to r-bioc-rtracklayer:amd64 1 502s Broken r-bioc-rtracklayer:amd64 Depends on r-cran-xml:amd64 < none | 3.99-0.18-1 @un uH > (>= 1.98-0) 502s Considering r-cran-xml:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 502s Re-Instated r-cran-xml:amd64 502s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-xvector:amd64 < none | 0.44.0-1 @un uH > (>= 0.44.0) 502s Considering r-bioc-xvector:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 502s Considering r-bioc-xvector:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 502s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-biostrings:amd64 < none | 2.72.1+dfsg-1 @un uH > (>= 2.72.1) 502s Considering r-bioc-biostrings:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 502s Reinst Failed because of protected r-bioc-biocgenerics:amd64 502s Considering r-bioc-biostrings:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 502s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-zlibbioc:amd64 < none | 1.50.0+dfsg-2 @un uH > (>= 1.50.0) 502s Considering r-bioc-zlibbioc:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 502s Reinst Failed because of protected r-bioc-biocgenerics:amd64 502s Considering r-bioc-zlibbioc:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 502s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-rsamtools:amd64 < none | 2.20.0+dfsg-1 @un uH > (>= 2.20.0) 502s Considering r-bioc-rsamtools:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 502s Reinst Failed because of protected r-bioc-biocgenerics:amd64 502s Considering r-bioc-rsamtools:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 502s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-genomicalignments:amd64 < none | 1.40.0-1 @un uH > (>= 1.40.0) 502s Considering r-bioc-genomicalignments:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 502s Reinst Failed because of protected r-bioc-biocgenerics:amd64 502s Considering r-bioc-genomicalignments:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 502s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-biocio:amd64 < none | 1.14.0+dfsg-1 @un uH > (>= 1.14.0) 502s Considering r-bioc-biocio:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 502s Reinst Failed because of protected r-bioc-biocgenerics:amd64 502s Considering r-bioc-biocio:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 502s Broken r-bioc-rtracklayer:amd64 Depends on r-cran-restfulr:amd64 < none | 0.0.15-1 @un uH > (>= 0.0.13) 502s Considering r-cran-restfulr:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 502s Re-Instated r-cran-rcurl:amd64 502s Re-Instated r-cran-rjson:amd64 502s Re-Instated r-cran-restfulr:amd64 502s Investigating (0) r-bioc-deseq2:amd64 < none -> 1.44.0+dfsg-1 @un puN Ib > 502s Broken r-bioc-deseq2:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 502s Considering r-bioc-biocgenerics:amd64 11 as a solution to r-bioc-deseq2:amd64 1 502s Broken r-bioc-deseq2:amd64 Depends on r-bioc-biocparallel:amd64 < none | 1.38.0-2 @un uH > (>= 1.38.0) 502s Considering r-bioc-biocparallel:amd64 0 as a solution to r-bioc-deseq2:amd64 1 502s Reinst Failed because of protected r-bioc-biocgenerics:amd64 502s Considering r-bioc-biocparallel:amd64 0 as a solution to r-bioc-deseq2:amd64 1 502s Broken r-bioc-deseq2:amd64 Depends on r-cran-locfit:amd64 < none | 1.5-9.10-1 @un uH > 502s Considering r-cran-locfit:amd64 2 as a solution to r-bioc-deseq2:amd64 1 502s Re-Instated r-cran-locfit:amd64 502s Broken r-bioc-deseq2:amd64 Depends on r-bioc-matrixgenerics:amd64 < none | 1.16.0-2 @un uH > (>= 1.16.0) 502s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-deseq2:amd64 1 502s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-deseq2:amd64 1 502s Investigating (0) r-bioc-limma:amd64 < none -> 3.60.6+dfsg-1 @un puN Ib > 502s Broken r-bioc-limma:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 502s Considering r-bioc-biocgenerics:amd64 11 as a solution to r-bioc-limma:amd64 1 502s Broken r-bioc-limma:amd64 Depends on r-cran-statmod:amd64 < none | 1.5.0-1 @un uH > 502s Considering r-cran-statmod:amd64 1 as a solution to r-bioc-limma:amd64 1 502s Re-Instated r-cran-statmod:amd64 502s Investigating (0) r-bioc-multtest:amd64 < none -> 2.60.0-1 @un puN Ib > 502s Broken r-bioc-multtest:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 502s Considering r-bioc-biocgenerics:amd64 11 as a solution to r-bioc-multtest:amd64 0 502s Done 502s Some packages could not be installed. This may mean that you have 502s requested an impossible situation or if you are using the unstable 502s distribution that some required packages have not yet been created 502s or been moved out of Incoming. 502s The following information may help to resolve the situation: 502s 502s The following packages have unmet dependencies: 502s r-bioc-biobase : Depends: r-api-bioc-3.19 502s r-bioc-delayedarray : Depends: r-api-bioc-3.19 502s Depends: r-bioc-matrixgenerics (>= 1.16.0) but it is not going to be installed 502s Depends: r-bioc-s4arrays (>= 1.4.1) but it is not going to be installed 502s Depends: r-bioc-sparsearray (>= 1.4.8) but it is not going to be installed 502s r-bioc-deseq2 : Depends: r-api-bioc-3.19 502s Depends: r-bioc-biocparallel (>= 1.38.0) but it is not going to be installed 502s Depends: r-bioc-matrixgenerics (>= 1.16.0) but it is not going to be installed 502s r-bioc-genomeinfodb : Depends: r-api-bioc-3.19 502s Depends: r-bioc-ucsc.utils (> 1.0.0+ds-1) but it is not going to be installed 502s r-bioc-genomicranges : Depends: r-api-bioc-3.19 502s Depends: r-bioc-xvector (>= 0.29.2) but it is not going to be installed 502s r-bioc-limma : Depends: r-api-bioc-3.19 502s r-bioc-multtest : Depends: r-api-bioc-3.19 502s r-bioc-rtracklayer : Depends: r-api-bioc-3.19 502s Depends: r-bioc-xvector (>= 0.44.0) but it is not going to be installed 502s Depends: r-bioc-biostrings (>= 2.72.1) but it is not going to be installed 502s Depends: r-bioc-zlibbioc (>= 1.50.0) but it is not going to be installed 502s Depends: r-bioc-rsamtools (>= 2.20.0) but it is not going to be installed 502s Depends: r-bioc-genomicalignments (>= 1.40.0) but it is not going to be installed 502s Depends: r-bioc-biocio (>= 1.14.0) but it is not going to be installed 502s r-bioc-summarizedexperiment : Depends: r-api-bioc-3.19 502s Depends: r-bioc-matrixgenerics (>= 1.16.0) but it is not going to be installed 502s Depends: r-bioc-s4arrays (>= 1.4.1) but it is not going to be installed 502s E: Unable to correct problems, you have held broken packages. 502s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed 502s Reading package lists... 503s Building dependency tree... 503s Reading state information... 503s Starting pkgProblemResolver with broken count: 0 503s Starting 2 pkgProblemResolver with broken count: 0 503s Done 503s The following NEW packages will be installed: 503s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 503s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 503s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-14 503s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 503s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 503s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 503s javascript-common libamd3 libasan8 libblas-dev libblas3 libboost-dev 503s libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libcolamd3 libdatrie1 503s libdeflate-dev libdeflate0 libfftw3-double3 libfontconfig1 libgcc-14-dev 503s libgfortran-14-dev libgfortran5 libglpk40 libgomp1 libgraphite2-3 503s libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 503s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 503s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 503s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 503s libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js 503s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 503s libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 liblerc4 503s liblsan0 libltdl7 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev 503s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 503s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 504s libpixman-1-0 libpkgconf3 libpng-dev libquadmath0 libreadline-dev 504s libsharpyuv0 libsm6 libstdc++-14-dev libsuitesparseconfig7 libtcl8.6 504s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 504s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 504s littler node-bootstrap-sass node-html5shiv node-normalize.css pandoc 504s pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 504s r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 504s r-bioc-biostrings r-bioc-delayedarray r-bioc-deseq2 r-bioc-genomeinfodb 504s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges 504s r-bioc-iranges r-bioc-limma r-bioc-matrixgenerics r-bioc-multtest 504s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 504s r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment 504s r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-ape 504s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-bitops r-cran-brio 504s r-cran-bslib r-cran-cachem r-cran-callr r-cran-caret r-cran-catools 504s r-cran-class r-cran-cli r-cran-clock r-cran-cluster r-cran-codetools 504s r-cran-colorspace r-cran-colourpicker r-cran-commonmark r-cran-conquer 504s r-cran-cowplot r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl 504s r-cran-data.table r-cran-deldir r-cran-deoptimr r-cran-desc r-cran-diagram 504s r-cran-diffobj r-cran-digest r-cran-dotcall64 r-cran-dplyr r-cran-dqrng 504s r-cran-e1071 r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastdummies 504s r-cran-fastmap r-cran-fitdistrplus r-cran-fnn r-cran-fontawesome 504s r-cran-foreach r-cran-formatr r-cran-fs r-cran-futile.logger 504s r-cran-futile.options r-cran-future r-cran-future.apply r-cran-gdata 504s r-cran-generics r-cran-ggplot2 r-cran-ggrepel r-cran-ggridges r-cran-globals 504s r-cran-glue r-cran-goftest r-cran-gower r-cran-gplots r-cran-gridextra 504s r-cran-gtable r-cran-gtools r-cran-hardhat r-cran-here r-cran-highr 504s r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-ica 504s r-cran-igraph r-cran-ipred r-cran-irlba r-cran-isoband r-cran-iterators 504s r-cran-jquerylib r-cran-jsonlite r-cran-kernlab r-cran-kernsmooth 504s r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice 504s r-cran-lava r-cran-lazyeval r-cran-leiden r-cran-lifecycle r-cran-listenv 504s r-cran-littler r-cran-lmtest r-cran-locfit r-cran-lubridate r-cran-magrittr 504s r-cran-mass r-cran-mathjaxr r-cran-matrix r-cran-matrixmodels 504s r-cran-matrixstats r-cran-memoise r-cran-metap r-cran-mgcv r-cran-mime 504s r-cran-miniui r-cran-mixtools r-cran-mnormt r-cran-modelmetrics 504s r-cran-multcomp r-cran-munsell r-cran-mutoss r-cran-mvtnorm r-cran-nlme 504s r-cran-nnet r-cran-numderiv r-cran-openssl r-cran-parallelly 504s r-cran-patchwork r-cran-pbapply r-cran-pillar r-cran-pkgbuild 504s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plotly 504s r-cran-plotrix r-cran-plyr r-cran-png r-cran-polyclip r-cran-praise 504s r-cran-proc r-cran-processx r-cran-prodlim r-cran-progressr r-cran-promises 504s r-cran-proxy r-cran-ps r-cran-purrr r-cran-qqconf r-cran-quantreg 504s r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rann 504s r-cran-rappdirs r-cran-rbibutils r-cran-rcolorbrewer r-cran-rcpp 504s r-cran-rcppannoy r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcpphnsw 504s r-cran-rcppprogress r-cran-rcpptoml r-cran-rcurl r-cran-rdpack 504s r-cran-recipes r-cran-reshape2 r-cran-restfulr r-cran-reticulate 504s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-robustbase r-cran-rocr 504s r-cran-rpart r-cran-rprojroot r-cran-rspectra r-cran-rsvd r-cran-rtsne 504s r-cran-sandwich r-cran-sass r-cran-scales r-cran-scattermore 504s r-cran-sctransform r-cran-segmented r-cran-seurat r-cran-seuratobject 504s r-cran-shape r-cran-shiny r-cran-shinyjs r-cran-sitmo r-cran-sn r-cran-snow 504s r-cran-sourcetools r-cran-sp r-cran-spam r-cran-sparsem r-cran-spatstat.data 504s r-cran-spatstat.explore r-cran-spatstat.geom r-cran-spatstat.random 504s r-cran-spatstat.sparse r-cran-spatstat.utils r-cran-squarem r-cran-statmod 504s r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tensor 504s r-cran-testthat r-cran-tfisher r-cran-th.data r-cran-tibble r-cran-tidyr 504s r-cran-tidyselect r-cran-timechange r-cran-timedate r-cran-tinytex 504s r-cran-tzdb r-cran-utf8 r-cran-uwot r-cran-vctrs r-cran-vgam 504s r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml 504s r-cran-xtable r-cran-yaml r-cran-zoo unzip x11-common xdg-utils zip 504s zlib1g-dev 504s The following packages will be upgraded: 504s gcc-14-base libatomic1 libgcc-s1 libpng16-16t64 libstdc++6 504s 5 upgraded, 386 newly installed, 0 to remove and 125 not upgraded. 504s Need to get 458 MB of archives. 504s After this operation, 1318 MB of additional disk space will be used. 504s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 gcc-14-base amd64 14.2.0-13ubuntu1 [53.0 kB] 504s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libstdc++6 amd64 14.2.0-13ubuntu1 [787 kB] 504s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libatomic1 amd64 14.2.0-13ubuntu1 [10.3 kB] 504s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgcc-s1 amd64 14.2.0-13ubuntu1 [78.2 kB] 504s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpng16-16t64 amd64 1.6.45-1 [219 kB] 504s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 504s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 504s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-13ubuntu1 [11.9 MB] 505s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 cpp-14 amd64 14.2.0-13ubuntu1 [1032 B] 505s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 505s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 505s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libcc1-0 amd64 14.2.0-13ubuntu1 [47.6 kB] 505s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgomp1 amd64 14.2.0-13ubuntu1 [148 kB] 505s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libitm1 amd64 14.2.0-13ubuntu1 [29.1 kB] 505s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libasan8 amd64 14.2.0-13ubuntu1 [2998 kB] 505s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 liblsan0 amd64 14.2.0-13ubuntu1 [1317 kB] 505s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libtsan2 amd64 14.2.0-13ubuntu1 [2732 kB] 505s Get:18 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libubsan1 amd64 14.2.0-13ubuntu1 [1177 kB] 505s Get:19 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libhwasan0 amd64 14.2.0-13ubuntu1 [1634 kB] 505s Get:20 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libquadmath0 amd64 14.2.0-13ubuntu1 [153 kB] 505s Get:21 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgcc-14-dev amd64 14.2.0-13ubuntu1 [2815 kB] 505s Get:22 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-13ubuntu1 [23.4 MB] 506s Get:23 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 gcc-14 amd64 14.2.0-13ubuntu1 [534 kB] 506s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 506s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 506s Get:26 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libstdc++-14-dev amd64 14.2.0-13ubuntu1 [2508 kB] 506s Get:27 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-13ubuntu1 [13.3 MB] 507s Get:28 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 g++-14 amd64 14.2.0-13ubuntu1 [21.1 kB] 507s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 507s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 507s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 507s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 507s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 507s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 507s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 507s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 507s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 507s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 507s Get:39 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 507s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 507s Get:41 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgfortran5 amd64 14.2.0-13ubuntu1 [909 kB] 507s Get:42 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgfortran-14-dev amd64 14.2.0-13ubuntu1 [965 kB] 507s Get:43 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-13ubuntu1 [12.5 MB] 508s Get:44 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 gfortran-14 amd64 14.2.0-13ubuntu1 [13.2 kB] 508s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1022 B] 508s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.1.0-2ubuntu1 [1172 B] 508s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 508s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 11+nmu1 [5936 B] 508s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libsuitesparseconfig7 amd64 1:7.8.3+dfsg-2 [13.4 kB] 508s Get:50 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamd3 amd64 1:7.8.3+dfsg-2 [31.1 kB] 508s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-4 [332 kB] 508s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.0-4 [307 kB] 508s Get:53 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost1.83-dev amd64 1.83.0-4ubuntu2 [10.7 MB] 509s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 509s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 509s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 509s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 509s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 509s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 509s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 509s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libcolamd3 amd64 1:7.8.3+dfsg-2 [19.5 kB] 509s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 509s Get:63 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 509s Get:64 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 509s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libfftw3-double3 amd64 3.3.10-2fakesync1build1 [839 kB] 509s Get:66 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libltdl7 amd64 2.5.4-2 [46.0 kB] 509s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 libglpk40 amd64 5.0-1build2 [369 kB] 509s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 509s Get:69 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 509s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 509s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 509s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 509s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 509s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 509s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 509s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 509s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 509s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 509s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 509s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 509s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 509s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 510s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 510s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 510s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 510s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 510s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 510s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 510s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 510s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 510s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 510s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-4 [3177 kB] 510s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.0-4 [6486 kB] 510s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 510s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 510s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5-2 [384 kB] 510s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 510s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 510s Get:99 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpango-1.0-0 amd64 1.56.0-3 [255 kB] 510s Get:100 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpangoft2-1.0-0 amd64 1.56.0-3 [52.5 kB] 510s Get:101 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpangocairo-1.0-0 amd64 1.56.0-3 [29.1 kB] 510s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 510s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 510s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu3 [214 kB] 511s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu3 [201 kB] 511s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu3 [6768 B] 511s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.42-4ubuntu3 [747 kB] 511s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 511s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 511s Get:110 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpng-dev amd64 1.6.45-1 [300 kB] 511s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 511s Get:112 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 511s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 511s Get:114 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 511s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 511s Get:116 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 511s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 511s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 511s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 511s Get:120 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 511s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 511s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu1 [185 kB] 511s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 511s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-0ubuntu1 [67.5 kB] 511s Get:125 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-base-core amd64 4.4.2-1build1 [28.9 MB] 514s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 514s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 514s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 514s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 514s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 514s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 514s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 516s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.3-1 [189 kB] 516s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 516s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 516s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 516s Get:137 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-base-dev all 4.4.2-1build1 [4342 B] 516s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 516s Get:139 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 516s Get:140 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 516s Get:141 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 516s Get:142 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 516s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 516s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 516s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 516s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 516s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 516s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 516s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 516s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.0-1 [221 kB] 516s Get:151 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 516s Get:152 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB] 517s Get:153 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 517s Get:154 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 517s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 5.2.3+dfsg-1ubuntu1 [180 kB] 517s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.8.9+dfsg-1 [445 kB] 517s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 517s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 517s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 517s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.2.0+dfsg-1 [405 kB] 517s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 517s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 517s Get:163 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 517s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 518s Get:165 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-genomeinfodb all 1.42.1+dfsg-2 [3883 kB] 518s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 518s Get:167 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 519s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 519s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-1-1 [4199 kB] 520s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.4.1-1 [513 kB] 520s Get:171 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-matrixgenerics all 1.18.0-2 [446 kB] 520s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 520s Get:173 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 520s Get:174 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-sparsearray amd64 1.6.0+dfsg-2 [1392 kB] 520s Get:175 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 520s Get:176 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB] 520s Get:177 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 520s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-locfit amd64 1.5-9.10-1 [518 kB] 520s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.3-1 [1348 kB] 521s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 521s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.4-1 [1708 kB] 521s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 521s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 521s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 521s Get:185 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 521s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.166-1 [2314 kB] 521s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 521s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 521s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 521s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 522s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB] 522s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 522s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 522s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 522s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 522s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 522s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 522s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 522s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 522s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 522s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 522s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 522s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 523s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 523s Get:205 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 523s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpparmadillo amd64 14.2.2-1-1 [864 kB] 523s Get:207 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-deseq2 amd64 1.46.0+dfsg-2 [1250 kB] 523s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bitops amd64 1.0-8-1 [30.3 kB] 523s Get:209 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB] 523s Get:210 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB] 524s Get:211 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB] 524s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 524s Get:213 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-limma amd64 3.62.2+dfsg-1 [1969 kB] 524s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB] 524s Get:215 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-multtest amd64 2.62.0-2 [844 kB] 524s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml amd64 3.99-0.18-1 [1748 kB] 524s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB] 524s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB] 524s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 524s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 524s Get:221 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-rtracklayer amd64 1.66.0-2 [5227 kB] 524s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 524s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ape amd64 5.8-1 [2923 kB] 525s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 525s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 525s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 525s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 525s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 525s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 525s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 525s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.4+dfsg-1 [245 kB] 525s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 525s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 525s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.7.0+dfsg-1 [4255 kB] 525s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.8.0-1 [395 kB] 525s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.4-1 [353 kB] 525s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 525s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 525s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 525s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-e1071 amd64 1.7-16-1 [565 kB] 525s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-iterators all 1.0.14-1 [336 kB] 525s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-foreach all 1.5.2-1 [124 kB] 525s Get:243 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-data.table amd64 1.16.4+dfsg-1 [2032 kB] 525s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-modelmetrics amd64 1.2.2.2-1build1 [128 kB] 525s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 525s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-proc amd64 1.18.5-1 [966 kB] 525s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 525s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 525s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 525s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tzdb amd64 0.4.0-2 [521 kB] 525s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-clock amd64 0.7.1-1 [1804 kB] 525s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gower amd64 1.0.1-1 [207 kB] 525s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-hardhat all 1.4.0+dfsg-1 [565 kB] 525s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB] 525s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nnet amd64 7.3-20-1 [116 kB] 525s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shape all 1.4.6.1-1 [749 kB] 525s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diagram all 1.6.5-2 [656 kB] 525s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernsmooth amd64 2.23-26-1 [94.5 kB] 525s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-globals all 0.16.3-1 [120 kB] 525s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 525s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-parallelly amd64 1.38.0-1 [385 kB] 525s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 525s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future.apply all 1.11.2+dfsg-1 [172 kB] 525s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-numderiv all 2016.8-1.1-3 [115 kB] 525s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-progressr all 0.14.0-1 [338 kB] 526s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-squarem all 2021.1-1 [179 kB] 526s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lava all 1.7.3+dfsg-1 [2166 kB] 526s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-prodlim amd64 2024.06.25-1 [415 kB] 526s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ipred amd64 0.9-15-1 [386 kB] 526s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-timechange amd64 0.3.0-1 [178 kB] 526s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lubridate amd64 1.9.3+dfsg-1 [1010 kB] 526s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 526s Get:273 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB] 526s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 526s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 526s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-timedate amd64 4041.110-1 [1208 kB] 526s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-recipes all 1.1.0+dfsg-1 [2035 kB] 526s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-reshape2 amd64 1.4.4-2build1 [114 kB] 526s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-caret amd64 6.0-94+dfsg-1 [3434 kB] 526s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-catools amd64 1.18.2-1 [201 kB] 526s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cluster amd64 2.1.8-1 [579 kB] 526s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.0-1 [111 kB] 526s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.49+dfsg-1 [545 kB] 526s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 526s Get:285 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 526s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 526s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 526s Get:288 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.53-1 [145 kB] 526s Get:289 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 526s Get:290 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 526s Get:291 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.0+dfsg-1 [287 kB] 526s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 526s Get:293 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 526s Get:294 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 526s Get:295 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 526s Get:296 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 526s Get:297 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.9.1+dfsg-1 [3111 kB] 526s Get:298 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.28+dfsg-1 [1501 kB] 526s Get:299 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 526s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-miniui all 0.1.1.1-3build1 [36.1 kB] 526s Get:301 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shinyjs all 2.1.0-1 [967 kB] 527s Get:302 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colourpicker all 1.3.0+dfsg-1 [1191 kB] 527s Get:303 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-conquer amd64 1.3.3-1 [499 kB] 527s Get:304 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cowplot all 1.1.3+dfsg-1 [614 kB] 527s Get:305 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 527s Get:306 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 527s Get:307 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 527s Get:308 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deoptimr all 1.1-3-1-1 [76.6 kB] 527s Get:309 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 527s Get:310 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 527s Get:311 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dotcall64 amd64 1.1-1-1 [38.1 kB] 527s Get:312 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sitmo amd64 2.0.2-1 [130 kB] 527s Get:313 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dqrng amd64 0.3.2+dfsg-1 [161 kB] 527s Get:314 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastdummies all 1.7.4-1 [49.7 kB] 527s Get:315 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fitdistrplus all 1.2-1-1 [2038 kB] 528s Get:316 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB] 528s Get:317 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtools amd64 3.9.5-1 [340 kB] 528s Get:318 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gdata all 3.0.1-1 [491 kB] 528s Get:319 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggrepel amd64 0.9.5-2 [254 kB] 528s Get:320 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggridges all 0.5.6-1 [2195 kB] 528s Get:321 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-goftest amd64 1.2-3-1 [59.5 kB] 528s Get:322 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gplots all 3.2.0-1 [484 kB] 528s Get:323 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 528s Get:324 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 528s Get:325 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-here all 1.0.1-2 [50.3 kB] 528s Get:326 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ica all 1.0-3-1 [85.4 kB] 528s Get:327 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-igraph amd64 2.0.3-1 [5098 kB] 528s Get:328 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-irlba amd64 2.3.5.1-4 [295 kB] 528s Get:329 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernlab amd64 0.9-33-1 [1947 kB] 528s Get:330 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpptoml amd64 0.2.2+dfsg-1 [110 kB] 528s Get:331 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 528s Get:332 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-reticulate amd64 1.39.0+dfsg-1 [1238 kB] 528s Get:333 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-leiden all 0.4.3.1+dfsg-1 [71.9 kB] 528s Get:334 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-zoo amd64 1.8-12-2 [984 kB] 528s Get:335 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lmtest amd64 0.9.40-1 [396 kB] 528s Get:336 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mathjaxr all 1.6-0-1 [605 kB] 528s Get:337 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixmodels all 0.5-3-1 [361 kB] 528s Get:338 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rbibutils amd64 2.3-1 [1023 kB] 528s Get:339 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rdpack all 2.6.2-1 [757 kB] 528s Get:340 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mnormt amd64 2.1.1-2 [170 kB] 528s Get:341 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sparsem amd64 1.84-2-1 [813 kB] 528s Get:342 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-quantreg amd64 5.99.1-1 [1455 kB] 528s Get:343 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sn all 2.1.1-2 [1815 kB] 528s Get:344 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-mvtnorm amd64 1.3-3-1 [923 kB] 528s Get:345 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tfisher all 0.2.0-3 [79.8 kB] 528s Get:346 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plotrix all 3.8-4-1 [1120 kB] 528s Get:347 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-th.data all 1.1-2-2 [8794 kB] 529s Get:348 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sandwich all 3.1-1-1 [1483 kB] 529s Get:349 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-multcomp all 1.4-26-2 [699 kB] 529s Get:350 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mutoss all 0.1-13-1 [1123 kB] 529s Get:351 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-robustbase amd64 0.99-4-1-1 [3038 kB] 529s Get:352 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-qqconf amd64 1.3.2+dfsg-1 [157 kB] 529s Get:353 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-metap all 1.11-1 [570 kB] 529s Get:354 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plotly all 4.10.4+dfsg-2 [3666 kB] 529s Get:355 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-segmented all 2.1-3-1 [1366 kB] 529s Get:356 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mixtools amd64 2.0.0-1 [1399 kB] 529s Get:357 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-patchwork all 1.3.0-1 [3220 kB] 530s Get:358 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 530s Get:359 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.4-1 [212 kB] 530s Get:360 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 530s Get:361 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB] 530s Get:362 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 530s Get:363 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 530s Get:364 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.oo all 1.26.0-1 [955 kB] 530s Get:365 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.utils all 2.12.3-1 [1386 kB] 530s Get:366 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rann amd64 2.6.2-1 [46.3 kB] 530s Get:367 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppannoy amd64 0.0.22-1 [235 kB] 530s Get:368 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 530s Get:369 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpphnsw amd64 0.5.0+ds-1 [171 kB] 530s Get:370 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppprogress all 0.4.2-2build1 [22.0 kB] 530s Get:371 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rocr all 1.0-11-3 [456 kB] 530s Get:372 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rspectra amd64 0.16-2-1 [448 kB] 530s Get:373 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsvd all 1.0.5-1 [3589 kB] 530s Get:374 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rtsne amd64 0.17-1 [109 kB] 530s Get:375 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scattermore amd64 1.2-1 [331 kB] 530s Get:376 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sctransform amd64 0.4.1-1 [504 kB] 530s Get:377 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sp amd64 1:2.1-4+dfsg-1 [1472 kB] 530s Get:378 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spam amd64 2.11-0-1 [2758 kB] 530s Get:379 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-seuratobject amd64 5.0.2-1 [1744 kB] 531s Get:380 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.utils amd64 3.1-0-1 [381 kB] 531s Get:381 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.data all 3.1-2-1 [4039 kB] 531s Get:382 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.geom amd64 3.2-9-2 [3946 kB] 531s Get:383 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.random amd64 3.2-3-1 [1169 kB] 531s Get:384 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tensor all 1.5-4 [15.7 kB] 531s Get:385 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.sparse amd64 3.0-3-1 [215 kB] 531s Get:386 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.explore amd64 3.2-7-1 [3432 kB] 531s Get:387 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-uwot amd64 0.2.2-1 [947 kB] 531s Get:388 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-seurat amd64 5.1.0-1 [3255 kB] 531s Get:389 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-1 [150 kB] 531s Get:390 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.1.1-1 [1636 kB] 532s Get:391 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vgam amd64 1.1-11-1 [7726 kB] 533s Preconfiguring packages ... 533s Fetched 458 MB in 29s (16.0 MB/s) 533s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 533s Preparing to unpack .../gcc-14-base_14.2.0-13ubuntu1_amd64.deb ... 533s Unpacking gcc-14-base:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 533s Setting up gcc-14-base:amd64 (14.2.0-13ubuntu1) ... 533s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 533s Preparing to unpack .../libstdc++6_14.2.0-13ubuntu1_amd64.deb ... 533s Unpacking libstdc++6:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 533s Setting up libstdc++6:amd64 (14.2.0-13ubuntu1) ... 533s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 533s Preparing to unpack .../libatomic1_14.2.0-13ubuntu1_amd64.deb ... 533s Unpacking libatomic1:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 533s Preparing to unpack .../libgcc-s1_14.2.0-13ubuntu1_amd64.deb ... 533s Unpacking libgcc-s1:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 533s Setting up libgcc-s1:amd64 (14.2.0-13ubuntu1) ... 533s (Reading database ... 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previously unselected package libubsan1:amd64. 534s Preparing to unpack .../013-libubsan1_14.2.0-13ubuntu1_amd64.deb ... 534s Unpacking libubsan1:amd64 (14.2.0-13ubuntu1) ... 534s Selecting previously unselected package libhwasan0:amd64. 534s Preparing to unpack .../014-libhwasan0_14.2.0-13ubuntu1_amd64.deb ... 534s Unpacking libhwasan0:amd64 (14.2.0-13ubuntu1) ... 534s Selecting previously unselected package libquadmath0:amd64. 534s Preparing to unpack .../015-libquadmath0_14.2.0-13ubuntu1_amd64.deb ... 534s Unpacking libquadmath0:amd64 (14.2.0-13ubuntu1) ... 534s Selecting previously unselected package libgcc-14-dev:amd64. 534s Preparing to unpack .../016-libgcc-14-dev_14.2.0-13ubuntu1_amd64.deb ... 534s Unpacking libgcc-14-dev:amd64 (14.2.0-13ubuntu1) ... 534s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 534s Preparing to unpack .../017-gcc-14-x86-64-linux-gnu_14.2.0-13ubuntu1_amd64.deb ... 534s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-13ubuntu1) ... 534s 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unselected package g++-14. 535s Preparing to unpack .../023-g++-14_14.2.0-13ubuntu1_amd64.deb ... 535s Unpacking g++-14 (14.2.0-13ubuntu1) ... 535s Selecting previously unselected package g++-x86-64-linux-gnu. 535s Preparing to unpack .../024-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 535s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 535s Selecting previously unselected package g++. 535s Preparing to unpack .../025-g++_4%3a14.1.0-2ubuntu1_amd64.deb ... 535s Unpacking g++ (4:14.1.0-2ubuntu1) ... 535s Selecting previously unselected package build-essential. 535s Preparing to unpack .../026-build-essential_12.10ubuntu1_amd64.deb ... 535s Unpacking build-essential (12.10ubuntu1) ... 535s Selecting previously unselected package dctrl-tools. 535s Preparing to unpack .../027-dctrl-tools_2.24-3build3_amd64.deb ... 535s Unpacking dctrl-tools (2.24-3build3) ... 535s Selecting previously unselected package fonts-dejavu-mono. 535s Preparing to unpack .../028-fonts-dejavu-mono_2.37-8_all.deb ... 535s Unpacking fonts-dejavu-mono (2.37-8) ... 535s Selecting previously unselected package fonts-dejavu-core. 535s Preparing to unpack .../029-fonts-dejavu-core_2.37-8_all.deb ... 535s Unpacking fonts-dejavu-core (2.37-8) ... 535s Selecting previously unselected package fontconfig-config. 535s Preparing to unpack .../030-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 535s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 535s Selecting previously unselected package libfontconfig1:amd64. 535s Preparing to unpack .../031-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 535s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 535s Selecting previously unselected package fontconfig. 535s Preparing to unpack .../032-fontconfig_2.15.0-1.1ubuntu2_amd64.deb ... 535s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 535s Selecting previously unselected package fonts-font-awesome. 535s Preparing to unpack .../033-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 535s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 535s Selecting previously unselected package fonts-glyphicons-halflings. 535s Preparing to unpack .../034-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 535s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 535s Selecting previously unselected package fonts-mathjax. 535s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 535s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 535s Selecting previously unselected package libgfortran5:amd64. 535s Preparing to unpack .../036-libgfortran5_14.2.0-13ubuntu1_amd64.deb ... 535s Unpacking libgfortran5:amd64 (14.2.0-13ubuntu1) ... 535s Selecting previously unselected package libgfortran-14-dev:amd64. 535s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-13ubuntu1_amd64.deb ... 535s Unpacking libgfortran-14-dev:amd64 (14.2.0-13ubuntu1) ... 535s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 535s Preparing to unpack .../038-gfortran-14-x86-64-linux-gnu_14.2.0-13ubuntu1_amd64.deb ... 535s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-13ubuntu1) ... 536s Selecting previously unselected package gfortran-14. 536s Preparing to unpack .../039-gfortran-14_14.2.0-13ubuntu1_amd64.deb ... 536s Unpacking gfortran-14 (14.2.0-13ubuntu1) ... 536s Selecting previously unselected package gfortran-x86-64-linux-gnu. 536s Preparing to unpack .../040-gfortran-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 536s Unpacking gfortran-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 536s Selecting previously unselected package gfortran. 536s Preparing to unpack .../041-gfortran_4%3a14.1.0-2ubuntu1_amd64.deb ... 536s Unpacking gfortran (4:14.1.0-2ubuntu1) ... 536s Selecting previously unselected package icu-devtools. 536s Preparing to unpack .../042-icu-devtools_76.1-1ubuntu2_amd64.deb ... 536s Unpacking icu-devtools (76.1-1ubuntu2) ... 536s Selecting previously unselected package javascript-common. 536s Preparing to unpack .../043-javascript-common_11+nmu1_all.deb ... 536s Unpacking javascript-common (11+nmu1) ... 536s Selecting previously unselected package libsuitesparseconfig7:amd64. 536s Preparing to unpack .../044-libsuitesparseconfig7_1%3a7.8.3+dfsg-2_amd64.deb ... 536s Unpacking libsuitesparseconfig7:amd64 (1:7.8.3+dfsg-2) ... 536s Selecting previously unselected package libamd3:amd64. 536s Preparing to unpack .../045-libamd3_1%3a7.8.3+dfsg-2_amd64.deb ... 536s Unpacking libamd3:amd64 (1:7.8.3+dfsg-2) ... 536s Selecting previously unselected package libblas3:amd64. 536s Preparing to unpack .../046-libblas3_3.12.0-4_amd64.deb ... 536s Unpacking libblas3:amd64 (3.12.0-4) ... 536s Selecting previously unselected package libblas-dev:amd64. 536s Preparing to unpack .../047-libblas-dev_3.12.0-4_amd64.deb ... 536s Unpacking libblas-dev:amd64 (3.12.0-4) ... 536s Selecting previously unselected package libboost1.83-dev:amd64. 536s Preparing to unpack .../048-libboost1.83-dev_1.83.0-4ubuntu2_amd64.deb ... 536s Unpacking libboost1.83-dev:amd64 (1.83.0-4ubuntu2) ... 538s Selecting previously unselected package libboost-dev:amd64. 538s Preparing to unpack .../049-libboost-dev_1.83.0.2ubuntu1_amd64.deb ... 538s Unpacking libboost-dev:amd64 (1.83.0.2ubuntu1) ... 538s Selecting previously unselected package libbz2-dev:amd64. 538s Preparing to unpack .../050-libbz2-dev_1.0.8-6_amd64.deb ... 538s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 538s Selecting previously unselected package libpixman-1-0:amd64. 538s Preparing to unpack .../051-libpixman-1-0_0.44.0-3_amd64.deb ... 538s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 538s Selecting previously unselected package libxcb-render0:amd64. 538s Preparing to unpack .../052-libxcb-render0_1.17.0-2_amd64.deb ... 538s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 538s Selecting previously unselected package libxcb-shm0:amd64. 538s Preparing to unpack .../053-libxcb-shm0_1.17.0-2_amd64.deb ... 538s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 538s Selecting previously unselected package libxrender1:amd64. 538s Preparing to unpack .../054-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 538s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 538s Selecting previously unselected package libcairo2:amd64. 538s Preparing to unpack .../055-libcairo2_1.18.2-2_amd64.deb ... 538s Unpacking libcairo2:amd64 (1.18.2-2) ... 538s Selecting previously unselected package libcolamd3:amd64. 538s Preparing to unpack .../056-libcolamd3_1%3a7.8.3+dfsg-2_amd64.deb ... 538s Unpacking libcolamd3:amd64 (1:7.8.3+dfsg-2) ... 538s Selecting previously unselected package libdatrie1:amd64. 538s Preparing to unpack .../057-libdatrie1_0.2.13-3build1_amd64.deb ... 538s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 538s Selecting previously unselected package libdeflate0:amd64. 538s Preparing to unpack .../058-libdeflate0_1.23-1_amd64.deb ... 538s Unpacking libdeflate0:amd64 (1.23-1) ... 538s Selecting previously unselected package libdeflate-dev:amd64. 538s Preparing to unpack .../059-libdeflate-dev_1.23-1_amd64.deb ... 538s Unpacking libdeflate-dev:amd64 (1.23-1) ... 538s Selecting previously unselected package libfftw3-double3:amd64. 538s Preparing to unpack .../060-libfftw3-double3_3.3.10-2fakesync1build1_amd64.deb ... 538s Unpacking libfftw3-double3:amd64 (3.3.10-2fakesync1build1) ... 538s Selecting previously unselected package libltdl7:amd64. 538s Preparing to unpack .../061-libltdl7_2.5.4-2_amd64.deb ... 538s Unpacking libltdl7:amd64 (2.5.4-2) ... 538s Selecting previously unselected package libglpk40:amd64. 538s Preparing to unpack .../062-libglpk40_5.0-1build2_amd64.deb ... 538s Unpacking libglpk40:amd64 (5.0-1build2) ... 538s Selecting previously unselected package libgraphite2-3:amd64. 538s Preparing to unpack .../063-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 538s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 538s Selecting previously unselected package libharfbuzz0b:amd64. 538s Preparing to unpack .../064-libharfbuzz0b_10.2.0-1_amd64.deb ... 538s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 539s Selecting previously unselected package x11-common. 539s Preparing to unpack .../065-x11-common_1%3a7.7+23ubuntu3_all.deb ... 539s Unpacking x11-common (1:7.7+23ubuntu3) ... 539s Selecting previously unselected package libice6:amd64. 539s Preparing to unpack .../066-libice6_2%3a1.1.1-1_amd64.deb ... 539s Unpacking libice6:amd64 (2:1.1.1-1) ... 539s Selecting previously unselected package libicu-dev:amd64. 539s Preparing to unpack .../067-libicu-dev_76.1-1ubuntu2_amd64.deb ... 539s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ... 539s Selecting previously unselected package libjpeg-turbo8:amd64. 539s Preparing to unpack .../068-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 539s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 539s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 539s Preparing to unpack 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package libjs-jquery-datatables. 539s Preparing to unpack .../080-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 539s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 539s Selecting previously unselected package libjs-sifter.js. 539s Preparing to unpack .../081-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 539s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 539s Selecting previously unselected package libjs-microplugin.js. 539s Preparing to unpack .../082-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 539s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 539s Selecting previously unselected package libjs-jquery-selectize.js. 539s Preparing to unpack .../083-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 539s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 539s Selecting previously unselected package libjs-jquery-ui. 539s Preparing to unpack .../084-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 539s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 540s Selecting previously unselected package libjs-json. 540s Preparing to unpack .../085-libjs-json_0~20221030+~1.0.8-1_all.deb ... 540s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 540s Selecting previously unselected package libjs-prettify. 540s Preparing to unpack .../086-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 540s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 540s Selecting previously unselected package liblapack3:amd64. 540s Preparing to unpack .../087-liblapack3_3.12.0-4_amd64.deb ... 540s Unpacking liblapack3:amd64 (3.12.0-4) ... 540s Selecting previously unselected package liblapack-dev:amd64. 540s Preparing to unpack .../088-liblapack-dev_3.12.0-4_amd64.deb ... 540s Unpacking liblapack-dev:amd64 (3.12.0-4) ... 540s Selecting previously unselected package liblerc4:amd64. 540s Preparing to unpack .../089-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 540s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 540s Selecting previously unselected package liblua5.4-0:amd64. 540s Preparing to unpack .../090-liblua5.4-0_5.4.7-1_amd64.deb ... 540s Unpacking liblua5.4-0:amd64 (5.4.7-1) ... 540s Selecting previously unselected package libncurses-dev:amd64. 540s Preparing to unpack .../091-libncurses-dev_6.5-2_amd64.deb ... 540s Unpacking libncurses-dev:amd64 (6.5-2) ... 540s Selecting previously unselected package libthai-data. 540s Preparing to unpack .../092-libthai-data_0.1.29-2build1_all.deb ... 540s Unpacking libthai-data (0.1.29-2build1) ... 540s Selecting previously unselected package libthai0:amd64. 540s Preparing to unpack .../093-libthai0_0.1.29-2build1_amd64.deb ... 540s Unpacking libthai0:amd64 (0.1.29-2build1) ... 540s Selecting previously unselected package libpango-1.0-0:amd64. 540s Preparing to unpack .../094-libpango-1.0-0_1.56.0-3_amd64.deb ... 540s Unpacking libpango-1.0-0:amd64 (1.56.0-3) ... 540s Selecting previously unselected package libpangoft2-1.0-0:amd64. 540s Preparing to unpack .../095-libpangoft2-1.0-0_1.56.0-3_amd64.deb ... 540s Unpacking 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Selecting previously unselected package libpcre2-posix3:amd64. 540s Preparing to unpack .../101-libpcre2-posix3_10.42-4ubuntu3_amd64.deb ... 540s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu3) ... 540s Selecting previously unselected package libpcre2-dev:amd64. 540s Preparing to unpack .../102-libpcre2-dev_10.42-4ubuntu3_amd64.deb ... 540s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu3) ... 540s Selecting previously unselected package libpkgconf3:amd64. 540s Preparing to unpack .../103-libpkgconf3_1.8.1-4_amd64.deb ... 540s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 540s Selecting previously unselected package zlib1g-dev:amd64. 540s Preparing to unpack .../104-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 540s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 540s Selecting previously unselected package libpng-dev:amd64. 540s Preparing to unpack .../105-libpng-dev_1.6.45-1_amd64.deb ... 540s Unpacking libpng-dev:amd64 (1.6.45-1) ... 540s Selecting previously 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littler (0.3.20-2) ... 541s Selecting previously unselected package node-bootstrap-sass. 541s Preparing to unpack .../123-node-bootstrap-sass_3.4.3-2_all.deb ... 541s Unpacking node-bootstrap-sass (3.4.3-2) ... 541s Selecting previously unselected package node-html5shiv. 541s Preparing to unpack .../124-node-html5shiv_3.7.3+dfsg-5_all.deb ... 541s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 541s Selecting previously unselected package node-normalize.css. 541s Preparing to unpack .../125-node-normalize.css_8.0.1-5_all.deb ... 541s Unpacking node-normalize.css (8.0.1-5) ... 541s Selecting previously unselected package pandoc-data. 541s Preparing to unpack .../126-pandoc-data_3.1.11.1-3build1_all.deb ... 541s Unpacking pandoc-data (3.1.11.1-3build1) ... 541s Selecting previously unselected package pandoc. 541s Preparing to unpack .../127-pandoc_3.1.11.1+ds-2_amd64.deb ... 541s Unpacking pandoc (3.1.11.1+ds-2) ... 543s Selecting previously unselected package liblzma-dev:amd64. 543s 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unpack .../139-r-cran-lambda.r_1.2.4-2build1_all.deb ... 543s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 543s Selecting previously unselected package r-cran-futile.options. 543s Preparing to unpack .../140-r-cran-futile.options_1.0.1-3build1_all.deb ... 543s Unpacking r-cran-futile.options (1.0.1-3build1) ... 543s Selecting previously unselected package r-cran-futile.logger. 543s Preparing to unpack .../141-r-cran-futile.logger_1.4.3-4build1_all.deb ... 543s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 543s Selecting previously unselected package r-cran-snow. 543s Preparing to unpack .../142-r-cran-snow_1%3a0.4.4-2_all.deb ... 543s Unpacking r-cran-snow (1:0.4.4-2) ... 543s Selecting previously unselected package r-cran-codetools. 543s Preparing to unpack .../143-r-cran-codetools_0.2-20-1_all.deb ... 543s Unpacking r-cran-codetools (0.2-20-1) ... 543s Selecting previously unselected package r-cran-bh. 543s Preparing to unpack .../144-r-cran-bh_1.84.0-1_all.deb ... 543s Unpacking r-cran-bh (1.84.0-1) ... 543s Selecting previously unselected package r-cran-cpp11. 543s Preparing to unpack .../145-r-cran-cpp11_0.5.0-1_all.deb ... 543s Unpacking r-cran-cpp11 (0.5.0-1) ... 543s Selecting previously unselected package r-bioc-biocparallel. 543s Preparing to unpack .../146-r-bioc-biocparallel_1.40.0-2_amd64.deb ... 543s Unpacking r-bioc-biocparallel (1.40.0-2) ... 543s Selecting previously unselected package r-bioc-iranges. 543s Preparing to unpack .../147-r-bioc-iranges_2.40.1-2_amd64.deb ... 543s Unpacking r-bioc-iranges (2.40.1-2) ... 543s Selecting previously unselected package r-bioc-zlibbioc. 543s Preparing to unpack .../148-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 543s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 543s Selecting previously unselected package r-bioc-xvector. 543s Preparing to unpack .../149-r-bioc-xvector_0.46.0-2_amd64.deb ... 543s Unpacking r-bioc-xvector (0.46.0-2) ... 543s Selecting previously unselected package r-cran-curl. 543s 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to unpack .../161-r-cran-crayon_1.5.2-1_all.deb ... 543s Unpacking r-cran-crayon (1.5.2-1) ... 543s Selecting previously unselected package r-bioc-biostrings. 543s Preparing to unpack .../162-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 543s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 544s Selecting previously unselected package r-cran-lattice. 544s Preparing to unpack .../163-r-cran-lattice_0.22-6-1_amd64.deb ... 544s Unpacking r-cran-lattice (0.22-6-1) ... 544s Selecting previously unselected package r-cran-matrix. 544s Preparing to unpack .../164-r-cran-matrix_1.7-1-1_amd64.deb ... 544s Unpacking r-cran-matrix (1.7-1-1) ... 544s Selecting previously unselected package r-cran-matrixstats. 544s Preparing to unpack .../165-r-cran-matrixstats_1.4.1-1_amd64.deb ... 544s Unpacking r-cran-matrixstats (1.4.1-1) ... 544s Selecting previously unselected package r-bioc-matrixgenerics. 544s Preparing to unpack .../166-r-bioc-matrixgenerics_1.18.0-2_all.deb ... 544s Unpacking r-bioc-matrixgenerics (1.18.0-2) ... 544s Selecting previously unselected package r-cran-abind. 544s Preparing to unpack .../167-r-cran-abind_1.4-8-1_all.deb ... 544s Unpacking r-cran-abind (1.4-8-1) ... 544s Selecting previously unselected package r-bioc-s4arrays. 544s Preparing to unpack .../168-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ... 544s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 544s Selecting previously unselected package r-bioc-sparsearray. 544s Preparing to unpack .../169-r-bioc-sparsearray_1.6.0+dfsg-2_amd64.deb ... 544s Unpacking r-bioc-sparsearray (1.6.0+dfsg-2) ... 544s Selecting previously unselected package r-bioc-delayedarray. 544s Preparing to unpack .../170-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ... 544s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 544s Selecting previously unselected package r-bioc-genomicranges. 544s Preparing to unpack .../171-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ... 544s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 544s Selecting previously unselected package r-bioc-summarizedexperiment. 544s Preparing to unpack .../172-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 544s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 544s Selecting previously unselected package r-cran-locfit. 544s Preparing to unpack .../173-r-cran-locfit_1.5-9.10-1_amd64.deb ... 544s Unpacking r-cran-locfit (1.5-9.10-1) ... 544s Selecting previously unselected package r-cran-cli. 544s Preparing to unpack .../174-r-cran-cli_3.6.3-1_amd64.deb ... 544s Unpacking r-cran-cli (3.6.3-1) ... 544s Selecting previously unselected package r-cran-glue. 544s Preparing to unpack .../175-r-cran-glue_1.8.0-1_amd64.deb ... 544s Unpacking r-cran-glue (1.8.0-1) ... 544s Selecting previously unselected package r-cran-rlang. 544s Preparing to unpack .../176-r-cran-rlang_1.1.4-1_amd64.deb ... 544s Unpacking r-cran-rlang (1.1.4-1) ... 544s Selecting previously unselected package r-cran-lifecycle. 544s Preparing to unpack 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package r-cran-farver. 544s Preparing to unpack .../183-r-cran-farver_2.1.2-1_amd64.deb ... 544s Unpacking r-cran-farver (2.1.2-1) ... 544s Selecting previously unselected package r-cran-labeling. 544s Preparing to unpack .../184-r-cran-labeling_0.4.3-1_all.deb ... 544s Unpacking r-cran-labeling (0.4.3-1) ... 544s Selecting previously unselected package r-cran-colorspace. 544s Preparing to unpack .../185-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ... 544s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 544s Selecting previously unselected package r-cran-munsell. 544s Preparing to unpack .../186-r-cran-munsell_0.5.1-1_all.deb ... 544s Unpacking r-cran-munsell (0.5.1-1) ... 544s Selecting previously unselected package r-cran-rcolorbrewer. 544s Preparing to unpack .../187-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 544s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 544s Selecting previously unselected package r-cran-viridislite. 545s Preparing to unpack .../188-r-cran-viridislite_0.4.2-2_all.deb ... 545s Unpacking r-cran-viridislite (0.4.2-2) ... 545s Selecting previously unselected package r-cran-scales. 545s Preparing to unpack .../189-r-cran-scales_1.3.0-1_all.deb ... 545s Unpacking r-cran-scales (1.3.0-1) ... 545s Selecting previously unselected package r-cran-fansi. 545s Preparing to unpack .../190-r-cran-fansi_1.0.5-1_amd64.deb ... 545s Unpacking r-cran-fansi (1.0.5-1) ... 545s Selecting previously unselected package r-cran-magrittr. 545s Preparing to unpack .../191-r-cran-magrittr_2.0.3-1_amd64.deb ... 545s Unpacking r-cran-magrittr (2.0.3-1) ... 545s Selecting previously unselected package r-cran-utf8. 545s Preparing to unpack .../192-r-cran-utf8_1.2.4-1_amd64.deb ... 545s Unpacking r-cran-utf8 (1.2.4-1) ... 545s Selecting previously unselected package r-cran-vctrs. 545s Preparing to unpack .../193-r-cran-vctrs_0.6.5-1_amd64.deb ... 545s Unpacking r-cran-vctrs (0.6.5-1) ... 545s Selecting previously unselected package r-cran-pillar. 545s Preparing to unpack .../194-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 545s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 545s Selecting previously unselected package r-cran-pkgconfig. 545s Preparing to unpack .../195-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 545s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 545s Selecting previously unselected package r-cran-tibble. 545s Preparing to unpack .../196-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 545s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 545s Selecting previously unselected package r-cran-withr. 545s Preparing to unpack .../197-r-cran-withr_3.0.2+dfsg-1_all.deb ... 545s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 545s Selecting previously unselected package r-cran-ggplot2. 545s Preparing to unpack .../198-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 545s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 545s Selecting previously unselected package r-cran-pkgkitten. 545s Preparing to unpack .../199-r-cran-pkgkitten_0.2.4-1_all.deb ... 545s Unpacking r-cran-pkgkitten (0.2.4-1) ... 545s Selecting previously unselected package r-cran-rcpp. 545s Preparing to unpack .../200-r-cran-rcpp_1.0.14-1_amd64.deb ... 545s Unpacking r-cran-rcpp (1.0.14-1) ... 545s Selecting previously unselected package r-cran-rcpparmadillo. 545s Preparing to unpack .../201-r-cran-rcpparmadillo_14.2.2-1-1_amd64.deb ... 545s Unpacking r-cran-rcpparmadillo (14.2.2-1-1) ... 545s Selecting previously unselected package r-bioc-deseq2. 545s Preparing to unpack .../202-r-bioc-deseq2_1.46.0+dfsg-2_amd64.deb ... 545s Unpacking r-bioc-deseq2 (1.46.0+dfsg-2) ... 545s Selecting previously unselected package r-cran-bitops. 545s Preparing to unpack .../203-r-cran-bitops_1.0-8-1_amd64.deb ... 545s Unpacking r-cran-bitops (1.0-8-1) ... 545s Selecting previously unselected package r-bioc-rhtslib. 545s Preparing to unpack .../204-r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb ... 545s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 545s Selecting previously unselected package r-bioc-rsamtools. 545s Preparing to unpack .../205-r-bioc-rsamtools_2.22.0+dfsg-2_amd64.deb ... 545s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 545s Selecting previously unselected package r-bioc-genomicalignments. 545s Preparing to unpack .../206-r-bioc-genomicalignments_1.42.0-2_amd64.deb ... 545s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 546s Selecting previously unselected package r-cran-statmod. 546s Preparing to unpack .../207-r-cran-statmod_1.5.0-1_amd64.deb ... 546s Unpacking r-cran-statmod (1.5.0-1) ... 546s Selecting previously unselected package r-bioc-limma. 546s Preparing to unpack .../208-r-bioc-limma_3.62.2+dfsg-1_amd64.deb ... 546s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 546s Selecting previously unselected package r-cran-survival. 546s Preparing to unpack .../209-r-cran-survival_3.8-3-1_amd64.deb ... 546s Unpacking r-cran-survival (3.8-3-1) ... 546s Selecting previously unselected package r-bioc-multtest. 546s Preparing to unpack .../210-r-bioc-multtest_2.62.0-2_amd64.deb ... 546s Unpacking r-bioc-multtest (2.62.0-2) ... 546s Selecting previously unselected package r-cran-xml. 546s Preparing to unpack .../211-r-cran-xml_3.99-0.18-1_amd64.deb ... 546s Unpacking r-cran-xml (3.99-0.18-1) ... 546s Selecting previously unselected package r-cran-rcurl. 546s Preparing to unpack .../212-r-cran-rcurl_1.98-1.16+dfsg-1_amd64.deb ... 546s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 546s Selecting previously unselected package r-cran-rjson. 546s Preparing to unpack .../213-r-cran-rjson_0.2.23-1_amd64.deb ... 546s Unpacking r-cran-rjson (0.2.23-1) ... 546s Selecting previously unselected package r-cran-yaml. 546s Preparing to unpack .../214-r-cran-yaml_2.3.10-1_amd64.deb ... 546s Unpacking r-cran-yaml (2.3.10-1) ... 546s Selecting previously unselected package r-cran-restfulr. 546s Preparing to unpack .../215-r-cran-restfulr_0.0.15-1_amd64.deb ... 546s Unpacking r-cran-restfulr (0.0.15-1) ... 546s Selecting previously unselected package r-bioc-rtracklayer. 546s Preparing to unpack .../216-r-bioc-rtracklayer_1.66.0-2_amd64.deb ... 546s Unpacking r-bioc-rtracklayer (1.66.0-2) ... 546s Selecting previously unselected package r-cran-digest. 546s Preparing to unpack .../217-r-cran-digest_0.6.37-1_amd64.deb ... 546s Unpacking r-cran-digest (0.6.37-1) ... 546s Selecting previously unselected package r-cran-ape. 546s Preparing to unpack .../218-r-cran-ape_5.8-1_amd64.deb ... 546s Unpacking r-cran-ape (5.8-1) ... 546s Selecting previously unselected package r-cran-base64enc. 546s Preparing to unpack .../219-r-cran-base64enc_0.1-3-3_amd64.deb ... 546s Unpacking r-cran-base64enc (0.1-3-3) ... 546s Selecting previously unselected package r-cran-brio. 546s Preparing to unpack .../220-r-cran-brio_1.1.5-1_amd64.deb ... 546s Unpacking r-cran-brio (1.1.5-1) ... 546s Selecting previously unselected package r-cran-fastmap. 546s Preparing to unpack .../221-r-cran-fastmap_1.2.0-1_amd64.deb ... 546s Unpacking r-cran-fastmap (1.2.0-1) ... 546s Selecting previously unselected package r-cran-cachem. 546s Preparing to unpack .../222-r-cran-cachem_1.1.0-1_amd64.deb ... 546s Unpacking r-cran-cachem (1.1.0-1) ... 546s Selecting previously unselected package r-cran-htmltools. 546s Preparing to unpack .../223-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 546s Unpacking r-cran-htmltools (0.5.8.1-1) ... 546s Selecting previously unselected package r-cran-jquerylib. 546s Preparing to unpack .../224-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 546s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 546s Selecting previously unselected package r-cran-memoise. 546s Preparing to unpack .../225-r-cran-memoise_2.0.1-1_all.deb ... 546s Unpacking r-cran-memoise (2.0.1-1) ... 546s Selecting previously unselected package r-cran-fs. 546s Preparing to unpack .../226-r-cran-fs_1.6.4+dfsg-1_amd64.deb ... 546s Unpacking r-cran-fs (1.6.4+dfsg-1) ... 546s Selecting previously unselected package r-cran-rappdirs. 546s Preparing to unpack .../227-r-cran-rappdirs_0.3.3-1_amd64.deb ... 546s Unpacking r-cran-rappdirs (0.3.3-1) ... 546s Selecting previously unselected package r-cran-sass. 546s Preparing to unpack .../228-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 546s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 546s Selecting previously unselected package r-cran-bslib. 546s Preparing to unpack .../229-r-cran-bslib_0.7.0+dfsg-1_all.deb ... 546s Unpacking r-cran-bslib (0.7.0+dfsg-1) ... 547s Selecting previously unselected package r-cran-ps. 547s Preparing to unpack .../230-r-cran-ps_1.8.0-1_amd64.deb ... 547s Unpacking r-cran-ps (1.8.0-1) ... 547s Selecting previously unselected package r-cran-processx. 547s Preparing to unpack .../231-r-cran-processx_3.8.4-1_amd64.deb ... 547s Unpacking r-cran-processx (3.8.4-1) ... 547s Selecting previously unselected package r-cran-callr. 547s Preparing to unpack .../232-r-cran-callr_3.7.6-1_all.deb ... 547s Unpacking r-cran-callr (3.7.6-1) ... 547s Selecting previously unselected package r-cran-class. 547s Preparing to unpack .../233-r-cran-class_7.3-23-1_amd64.deb ... 547s Unpacking r-cran-class (7.3-23-1) ... 547s Selecting previously unselected package r-cran-proxy. 547s Preparing to unpack .../234-r-cran-proxy_0.4-27-1_amd64.deb ... 547s Unpacking r-cran-proxy (0.4-27-1) ... 547s Selecting previously unselected package r-cran-e1071. 547s Preparing to unpack .../235-r-cran-e1071_1.7-16-1_amd64.deb ... 547s Unpacking r-cran-e1071 (1.7-16-1) ... 547s Selecting previously unselected package r-cran-iterators. 547s Preparing to unpack .../236-r-cran-iterators_1.0.14-1_all.deb ... 547s Unpacking r-cran-iterators (1.0.14-1) ... 547s Selecting previously unselected package r-cran-foreach. 547s Preparing to unpack .../237-r-cran-foreach_1.5.2-1_all.deb ... 547s Unpacking r-cran-foreach (1.5.2-1) ... 547s Selecting previously unselected package r-cran-data.table. 547s Preparing to unpack .../238-r-cran-data.table_1.16.4+dfsg-1_amd64.deb ... 547s Unpacking r-cran-data.table (1.16.4+dfsg-1) ... 547s Selecting previously unselected package r-cran-modelmetrics. 547s Preparing to unpack .../239-r-cran-modelmetrics_1.2.2.2-1build1_amd64.deb ... 547s Unpacking r-cran-modelmetrics (1.2.2.2-1build1) ... 547s Selecting previously unselected package r-cran-plyr. 547s Preparing to unpack .../240-r-cran-plyr_1.8.9-1_amd64.deb ... 547s Unpacking r-cran-plyr (1.8.9-1) ... 547s Selecting previously unselected package r-cran-proc. 547s Preparing to unpack .../241-r-cran-proc_1.18.5-1_amd64.deb ... 547s Unpacking r-cran-proc (1.18.5-1) ... 547s Selecting previously unselected package r-cran-generics. 547s Preparing to unpack .../242-r-cran-generics_0.1.3-1_all.deb ... 547s Unpacking r-cran-generics (0.1.3-1) ... 547s Selecting previously unselected package r-cran-tidyselect. 547s Preparing to unpack .../243-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 547s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 547s Selecting previously unselected package r-cran-dplyr. 547s Preparing to unpack .../244-r-cran-dplyr_1.1.4-4_amd64.deb ... 547s Unpacking r-cran-dplyr (1.1.4-4) ... 547s Selecting previously unselected package r-cran-tzdb. 547s Preparing to unpack .../245-r-cran-tzdb_0.4.0-2_amd64.deb ... 547s Unpacking r-cran-tzdb (0.4.0-2) ... 547s Selecting previously unselected package r-cran-clock. 547s Preparing to unpack .../246-r-cran-clock_0.7.1-1_amd64.deb ... 547s Unpacking r-cran-clock (0.7.1-1) ... 547s Selecting previously unselected package r-cran-gower. 547s Preparing to unpack .../247-r-cran-gower_1.0.1-1_amd64.deb ... 547s Unpacking r-cran-gower (1.0.1-1) ... 547s Selecting previously unselected package r-cran-hardhat. 547s Preparing to unpack .../248-r-cran-hardhat_1.4.0+dfsg-1_all.deb ... 547s Unpacking r-cran-hardhat (1.4.0+dfsg-1) ... 547s Selecting previously unselected package r-cran-rpart. 547s Preparing to unpack .../249-r-cran-rpart_4.1.24-1_amd64.deb ... 547s Unpacking r-cran-rpart (4.1.24-1) ... 547s Selecting previously unselected package r-cran-nnet. 547s Preparing to unpack .../250-r-cran-nnet_7.3-20-1_amd64.deb ... 547s Unpacking r-cran-nnet (7.3-20-1) ... 547s Selecting previously unselected package r-cran-shape. 547s Preparing to unpack .../251-r-cran-shape_1.4.6.1-1_all.deb ... 547s Unpacking r-cran-shape (1.4.6.1-1) ... 547s Selecting previously unselected package r-cran-diagram. 547s Preparing to unpack .../252-r-cran-diagram_1.6.5-2_all.deb ... 547s Unpacking r-cran-diagram (1.6.5-2) ... 547s Selecting previously unselected package r-cran-kernsmooth. 547s Preparing to unpack .../253-r-cran-kernsmooth_2.23-26-1_amd64.deb ... 547s Unpacking r-cran-kernsmooth (2.23-26-1) ... 548s Selecting previously unselected package r-cran-globals. 548s Preparing to unpack .../254-r-cran-globals_0.16.3-1_all.deb ... 548s Unpacking r-cran-globals (0.16.3-1) ... 548s Selecting previously unselected package r-cran-listenv. 548s Preparing to unpack .../255-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 548s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 548s Selecting previously unselected package r-cran-parallelly. 548s Preparing to unpack .../256-r-cran-parallelly_1.38.0-1_amd64.deb ... 548s Unpacking r-cran-parallelly (1.38.0-1) ... 548s Selecting previously unselected package r-cran-future. 548s Preparing to unpack .../257-r-cran-future_1.34.0+dfsg-1_all.deb ... 548s Unpacking r-cran-future (1.34.0+dfsg-1) ... 548s Selecting previously unselected package r-cran-future.apply. 548s Preparing to unpack .../258-r-cran-future.apply_1.11.2+dfsg-1_all.deb ... 548s Unpacking r-cran-future.apply (1.11.2+dfsg-1) ... 548s Selecting previously unselected package r-cran-numderiv. 548s Preparing to unpack .../259-r-cran-numderiv_2016.8-1.1-3_all.deb ... 548s Unpacking r-cran-numderiv (2016.8-1.1-3) ... 548s Selecting previously unselected package r-cran-progressr. 548s Preparing to unpack .../260-r-cran-progressr_0.14.0-1_all.deb ... 548s Unpacking r-cran-progressr (0.14.0-1) ... 548s Selecting previously unselected package r-cran-squarem. 548s Preparing to unpack .../261-r-cran-squarem_2021.1-1_all.deb ... 548s Unpacking r-cran-squarem (2021.1-1) ... 548s Selecting previously unselected package r-cran-lava. 548s Preparing to unpack .../262-r-cran-lava_1.7.3+dfsg-1_all.deb ... 548s Unpacking r-cran-lava (1.7.3+dfsg-1) ... 548s Selecting previously unselected package r-cran-prodlim. 548s Preparing to unpack .../263-r-cran-prodlim_2024.06.25-1_amd64.deb ... 548s Unpacking r-cran-prodlim (2024.06.25-1) ... 548s Selecting previously unselected package r-cran-ipred. 548s Preparing to unpack .../264-r-cran-ipred_0.9-15-1_amd64.deb ... 548s Unpacking r-cran-ipred (0.9-15-1) ... 548s Selecting previously unselected package r-cran-timechange. 548s Preparing to unpack .../265-r-cran-timechange_0.3.0-1_amd64.deb ... 548s Unpacking r-cran-timechange (0.3.0-1) ... 548s Selecting previously unselected package r-cran-lubridate. 548s Preparing to unpack .../266-r-cran-lubridate_1.9.3+dfsg-1_amd64.deb ... 548s Unpacking r-cran-lubridate (1.9.3+dfsg-1) ... 548s Selecting previously unselected package r-cran-purrr. 548s Preparing to unpack .../267-r-cran-purrr_1.0.2-1_amd64.deb ... 548s Unpacking r-cran-purrr (1.0.2-1) ... 548s Selecting previously unselected package r-cran-stringi. 548s Preparing to unpack .../268-r-cran-stringi_1.8.4-1build1_amd64.deb ... 548s Unpacking r-cran-stringi (1.8.4-1build1) ... 548s Selecting previously unselected package r-cran-stringr. 548s Preparing to unpack .../269-r-cran-stringr_1.5.1-1_all.deb ... 548s Unpacking r-cran-stringr (1.5.1-1) ... 548s Selecting previously unselected package r-cran-tidyr. 548s Preparing to unpack .../270-r-cran-tidyr_1.3.1-1_amd64.deb ... 548s Unpacking r-cran-tidyr (1.3.1-1) ... 548s Selecting previously unselected package r-cran-timedate. 548s Preparing to unpack .../271-r-cran-timedate_4041.110-1_amd64.deb ... 548s Unpacking r-cran-timedate (4041.110-1) ... 548s Selecting previously unselected package r-cran-recipes. 548s Preparing to unpack .../272-r-cran-recipes_1.1.0+dfsg-1_all.deb ... 548s Unpacking r-cran-recipes (1.1.0+dfsg-1) ... 548s Selecting previously unselected package r-cran-reshape2. 548s Preparing to unpack .../273-r-cran-reshape2_1.4.4-2build1_amd64.deb ... 548s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 548s Selecting previously unselected package r-cran-caret. 548s Preparing to unpack .../274-r-cran-caret_6.0-94+dfsg-1_amd64.deb ... 548s Unpacking r-cran-caret (6.0-94+dfsg-1) ... 549s Selecting previously unselected package r-cran-catools. 549s Preparing to unpack .../275-r-cran-catools_1.18.2-1_amd64.deb ... 549s Unpacking r-cran-catools (1.18.2-1) ... 549s Selecting previously unselected package r-cran-cluster. 549s Preparing to unpack .../276-r-cran-cluster_2.1.8-1_amd64.deb ... 549s Unpacking r-cran-cluster (2.1.8-1) ... 549s Selecting previously unselected package r-cran-evaluate. 549s Preparing to unpack .../277-r-cran-evaluate_1.0.0-1_all.deb ... 549s Unpacking r-cran-evaluate (1.0.0-1) ... 549s Selecting previously unselected package r-cran-xfun. 549s Preparing to unpack .../278-r-cran-xfun_0.49+dfsg-1_amd64.deb ... 549s Unpacking r-cran-xfun (0.49+dfsg-1) ... 549s Selecting previously unselected package r-cran-highr. 549s Preparing to unpack .../279-r-cran-highr_0.11+dfsg-1_all.deb ... 549s Unpacking r-cran-highr (0.11+dfsg-1) ... 549s Selecting previously unselected package libjs-mathjax. 549s Preparing to unpack .../280-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 549s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 549s Selecting previously unselected package r-cran-knitr. 549s Preparing to unpack .../281-r-cran-knitr_1.49+dfsg-1_all.deb ... 549s Unpacking r-cran-knitr (1.49+dfsg-1) ... 550s Selecting previously unselected package r-cran-fontawesome. 550s Preparing to unpack .../282-r-cran-fontawesome_0.5.2-1_all.deb ... 550s Unpacking r-cran-fontawesome (0.5.2-1) ... 550s Selecting previously unselected package r-cran-tinytex. 550s Preparing to unpack .../283-r-cran-tinytex_0.53-1_all.deb ... 550s Unpacking r-cran-tinytex (0.53-1) ... 550s Selecting previously unselected package libjs-modernizr. 550s Preparing to unpack .../284-libjs-modernizr_3.13.0-0.1_all.deb ... 550s Unpacking libjs-modernizr (3.13.0-0.1) ... 550s Selecting previously unselected package r-cran-later. 550s Preparing to unpack .../285-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 550s Unpacking r-cran-later (1.3.2+dfsg-1) ... 550s Selecting previously unselected package r-cran-promises. 550s Preparing to unpack .../286-r-cran-promises_1.3.0+dfsg-1_amd64.deb ... 550s Unpacking r-cran-promises (1.3.0+dfsg-1) ... 550s Selecting previously unselected package r-cran-httpuv. 550s Preparing to unpack .../287-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 550s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 550s Selecting previously unselected package r-cran-xtable. 550s Preparing to unpack .../288-r-cran-xtable_1%3a1.8-4-2_all.deb ... 550s Unpacking r-cran-xtable (1:1.8-4-2) ... 550s Selecting previously unselected package r-cran-sourcetools. 550s Preparing to unpack .../289-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 550s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 550s Selecting previously unselected package r-cran-commonmark. 550s Preparing to unpack .../290-r-cran-commonmark_1.9.2-2_amd64.deb ... 550s Unpacking r-cran-commonmark (1.9.2-2) ... 550s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 550s Preparing to unpack .../291-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 550s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 550s Selecting previously unselected package r-cran-shiny. 550s Preparing to unpack .../292-r-cran-shiny_1.9.1+dfsg-1_all.deb ... 550s Unpacking r-cran-shiny (1.9.1+dfsg-1) ... 550s Selecting previously unselected package r-cran-rmarkdown. 550s Preparing to unpack .../293-r-cran-rmarkdown_2.28+dfsg-1_all.deb ... 550s Unpacking r-cran-rmarkdown (2.28+dfsg-1) ... 550s Selecting previously unselected package r-cran-htmlwidgets. 550s Preparing to unpack .../294-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 550s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 550s Selecting previously unselected package r-cran-miniui. 550s Preparing to unpack .../295-r-cran-miniui_0.1.1.1-3build1_all.deb ... 550s Unpacking r-cran-miniui (0.1.1.1-3build1) ... 550s Selecting previously unselected package r-cran-shinyjs. 550s Preparing to unpack .../296-r-cran-shinyjs_2.1.0-1_all.deb ... 550s Unpacking r-cran-shinyjs (2.1.0-1) ... 550s Selecting previously unselected package r-cran-colourpicker. 550s Preparing to unpack .../297-r-cran-colourpicker_1.3.0+dfsg-1_all.deb ... 550s Unpacking r-cran-colourpicker (1.3.0+dfsg-1) ... 550s Selecting previously unselected package r-cran-conquer. 550s Preparing to unpack .../298-r-cran-conquer_1.3.3-1_amd64.deb ... 550s Unpacking r-cran-conquer (1.3.3-1) ... 550s Selecting previously unselected package r-cran-cowplot. 550s Preparing to unpack .../299-r-cran-cowplot_1.1.3+dfsg-1_all.deb ... 550s Unpacking r-cran-cowplot (1.1.3+dfsg-1) ... 550s Selecting previously unselected package r-cran-lazyeval. 550s Preparing to unpack .../300-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 550s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 550s Selecting previously unselected package r-cran-crosstalk. 550s Preparing to unpack .../301-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 550s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 550s Selecting previously unselected package r-cran-deldir. 550s Preparing to unpack .../302-r-cran-deldir_2.0-4-1build1_amd64.deb ... 550s Unpacking r-cran-deldir (2.0-4-1build1) ... 550s Selecting previously unselected package r-cran-deoptimr. 550s Preparing to unpack .../303-r-cran-deoptimr_1.1-3-1-1_all.deb ... 550s Unpacking r-cran-deoptimr (1.1-3-1-1) ... 550s Selecting previously unselected package r-cran-desc. 550s Preparing to unpack .../304-r-cran-desc_1.4.3-1_all.deb ... 550s Unpacking r-cran-desc (1.4.3-1) ... 551s Selecting previously unselected package r-cran-diffobj. 551s Preparing to unpack .../305-r-cran-diffobj_0.3.5-1_amd64.deb ... 551s Unpacking r-cran-diffobj (0.3.5-1) ... 551s Selecting previously unselected package r-cran-dotcall64. 551s Preparing to unpack .../306-r-cran-dotcall64_1.1-1-1_amd64.deb ... 551s Unpacking r-cran-dotcall64 (1.1-1-1) ... 551s Selecting previously unselected package r-cran-sitmo. 551s Preparing to unpack .../307-r-cran-sitmo_2.0.2-1_amd64.deb ... 551s Unpacking r-cran-sitmo (2.0.2-1) ... 551s Selecting previously unselected package r-cran-dqrng. 551s Preparing to unpack .../308-r-cran-dqrng_0.3.2+dfsg-1_amd64.deb ... 551s Unpacking r-cran-dqrng (0.3.2+dfsg-1) ... 551s Selecting previously unselected package r-cran-fastdummies. 551s Preparing to unpack .../309-r-cran-fastdummies_1.7.4-1_all.deb ... 551s Unpacking r-cran-fastdummies (1.7.4-1) ... 551s Selecting previously unselected package r-cran-fitdistrplus. 551s Preparing to unpack .../310-r-cran-fitdistrplus_1.2-1-1_all.deb ... 551s Unpacking r-cran-fitdistrplus (1.2-1-1) ... 551s Selecting previously unselected package r-cran-fnn. 551s Preparing to unpack .../311-r-cran-fnn_1.1.4.1-1_amd64.deb ... 551s Unpacking r-cran-fnn (1.1.4.1-1) ... 551s Selecting previously unselected package r-cran-gtools. 551s Preparing to unpack .../312-r-cran-gtools_3.9.5-1_amd64.deb ... 551s Unpacking r-cran-gtools (3.9.5-1) ... 551s Selecting previously unselected package r-cran-gdata. 551s Preparing to unpack .../313-r-cran-gdata_3.0.1-1_all.deb ... 551s Unpacking r-cran-gdata (3.0.1-1) ... 551s Selecting previously unselected package r-cran-ggrepel. 551s Preparing to unpack .../314-r-cran-ggrepel_0.9.5-2_amd64.deb ... 551s Unpacking r-cran-ggrepel (0.9.5-2) ... 551s Selecting previously unselected package r-cran-ggridges. 551s Preparing to unpack .../315-r-cran-ggridges_0.5.6-1_all.deb ... 551s Unpacking r-cran-ggridges (0.5.6-1) ... 551s Selecting previously unselected package r-cran-goftest. 551s Preparing to unpack .../316-r-cran-goftest_1.2-3-1_amd64.deb ... 551s Unpacking r-cran-goftest (1.2-3-1) ... 551s Selecting previously unselected package r-cran-gplots. 551s Preparing to unpack .../317-r-cran-gplots_3.2.0-1_all.deb ... 551s Unpacking r-cran-gplots (3.2.0-1) ... 551s Selecting previously unselected package r-cran-gridextra. 551s Preparing to unpack .../318-r-cran-gridextra_2.3-3build1_all.deb ... 551s Unpacking r-cran-gridextra (2.3-3build1) ... 551s Selecting previously unselected package r-cran-rprojroot. 551s Preparing to unpack .../319-r-cran-rprojroot_2.0.4-1_all.deb ... 551s Unpacking r-cran-rprojroot (2.0.4-1) ... 551s Selecting previously unselected package r-cran-here. 551s Preparing to unpack .../320-r-cran-here_1.0.1-2_all.deb ... 551s Unpacking r-cran-here (1.0.1-2) ... 551s Selecting previously unselected package r-cran-ica. 551s Preparing to unpack .../321-r-cran-ica_1.0-3-1_all.deb ... 551s Unpacking r-cran-ica (1.0-3-1) ... 551s Selecting previously unselected package r-cran-igraph. 551s Preparing to unpack .../322-r-cran-igraph_2.0.3-1_amd64.deb ... 551s Unpacking r-cran-igraph (2.0.3-1) ... 551s Selecting previously unselected package r-cran-irlba. 551s Preparing to unpack .../323-r-cran-irlba_2.3.5.1-4_amd64.deb ... 551s Unpacking r-cran-irlba (2.3.5.1-4) ... 551s Selecting previously unselected package r-cran-kernlab. 551s Preparing to unpack .../324-r-cran-kernlab_0.9-33-1_amd64.deb ... 551s Unpacking r-cran-kernlab (0.9-33-1) ... 552s Selecting previously unselected package r-cran-rcpptoml. 552s Preparing to unpack .../325-r-cran-rcpptoml_0.2.2+dfsg-1_amd64.deb ... 552s Unpacking r-cran-rcpptoml (0.2.2+dfsg-1) ... 552s Selecting previously unselected package r-cran-png. 552s Preparing to unpack .../326-r-cran-png_0.1-8-1build2_amd64.deb ... 552s Unpacking r-cran-png (0.1-8-1build2) ... 552s Selecting previously unselected package r-cran-reticulate. 552s Preparing to unpack .../327-r-cran-reticulate_1.39.0+dfsg-1_amd64.deb ... 552s Unpacking r-cran-reticulate (1.39.0+dfsg-1) ... 552s Selecting previously unselected package r-cran-leiden. 552s Preparing to unpack .../328-r-cran-leiden_0.4.3.1+dfsg-1_all.deb ... 552s Unpacking r-cran-leiden (0.4.3.1+dfsg-1) ... 552s Selecting previously unselected package r-cran-zoo. 552s Preparing to unpack .../329-r-cran-zoo_1.8-12-2_amd64.deb ... 552s Unpacking r-cran-zoo (1.8-12-2) ... 552s Selecting previously unselected package r-cran-lmtest. 552s Preparing to unpack .../330-r-cran-lmtest_0.9.40-1_amd64.deb ... 552s Unpacking r-cran-lmtest (0.9.40-1) ... 552s Selecting previously unselected package r-cran-mathjaxr. 552s Preparing to unpack .../331-r-cran-mathjaxr_1.6-0-1_all.deb ... 552s Unpacking r-cran-mathjaxr (1.6-0-1) ... 552s Selecting previously unselected package r-cran-matrixmodels. 552s Preparing to unpack .../332-r-cran-matrixmodels_0.5-3-1_all.deb ... 552s Unpacking r-cran-matrixmodels (0.5-3-1) ... 552s Selecting previously unselected package r-cran-rbibutils. 552s Preparing to unpack .../333-r-cran-rbibutils_2.3-1_amd64.deb ... 552s Unpacking r-cran-rbibutils (2.3-1) ... 552s Selecting previously unselected package r-cran-rdpack. 552s Preparing to unpack .../334-r-cran-rdpack_2.6.2-1_all.deb ... 552s Unpacking r-cran-rdpack (2.6.2-1) ... 552s Selecting previously unselected package r-cran-mnormt. 552s Preparing to unpack .../335-r-cran-mnormt_2.1.1-2_amd64.deb ... 552s Unpacking r-cran-mnormt (2.1.1-2) ... 552s Selecting previously unselected package r-cran-sparsem. 552s Preparing to unpack .../336-r-cran-sparsem_1.84-2-1_amd64.deb ... 552s Unpacking r-cran-sparsem (1.84-2-1) ... 552s Selecting previously unselected package r-cran-quantreg. 552s Preparing to unpack .../337-r-cran-quantreg_5.99.1-1_amd64.deb ... 552s Unpacking r-cran-quantreg (5.99.1-1) ... 552s Selecting previously unselected package r-cran-sn. 552s Preparing to unpack .../338-r-cran-sn_2.1.1-2_all.deb ... 552s Unpacking r-cran-sn (2.1.1-2) ... 552s Selecting previously unselected package r-cran-mvtnorm. 552s Preparing to unpack .../339-r-cran-mvtnorm_1.3-3-1_amd64.deb ... 552s Unpacking r-cran-mvtnorm (1.3-3-1) ... 552s Selecting previously unselected package r-cran-tfisher. 552s Preparing to unpack .../340-r-cran-tfisher_0.2.0-3_all.deb ... 552s Unpacking r-cran-tfisher (0.2.0-3) ... 552s Selecting previously unselected package r-cran-plotrix. 552s Preparing to unpack .../341-r-cran-plotrix_3.8-4-1_all.deb ... 552s Unpacking r-cran-plotrix (3.8-4-1) ... 552s Selecting previously unselected package r-cran-th.data. 552s Preparing to unpack .../342-r-cran-th.data_1.1-2-2_all.deb ... 552s Unpacking r-cran-th.data (1.1-2-2) ... 552s Selecting previously unselected package r-cran-sandwich. 552s Preparing to unpack .../343-r-cran-sandwich_3.1-1-1_all.deb ... 552s Unpacking r-cran-sandwich (3.1-1-1) ... 552s Selecting previously unselected package r-cran-multcomp. 552s Preparing to unpack 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previously unselected package r-cran-segmented. 553s Preparing to unpack .../350-r-cran-segmented_2.1-3-1_all.deb ... 553s Unpacking r-cran-segmented (2.1-3-1) ... 553s Selecting previously unselected package r-cran-mixtools. 553s Preparing to unpack .../351-r-cran-mixtools_2.0.0-1_amd64.deb ... 553s Unpacking r-cran-mixtools (2.0.0-1) ... 553s Selecting previously unselected package r-cran-patchwork. 553s Preparing to unpack .../352-r-cran-patchwork_1.3.0-1_all.deb ... 553s Unpacking r-cran-patchwork (1.3.0-1) ... 553s Selecting previously unselected package r-cran-pbapply. 553s Preparing to unpack .../353-r-cran-pbapply_1.7-2-1_all.deb ... 553s Unpacking r-cran-pbapply (1.7-2-1) ... 553s Selecting previously unselected package r-cran-pkgbuild. 553s Preparing to unpack .../354-r-cran-pkgbuild_1.4.4-1_all.deb ... 553s Unpacking r-cran-pkgbuild (1.4.4-1) ... 553s Selecting previously unselected package r-cran-pkgload. 553s Preparing to unpack .../355-r-cran-pkgload_1.4.0-1_all.deb ... 553s Unpacking r-cran-pkgload (1.4.0-1) ... 553s Selecting previously unselected package r-cran-polyclip. 553s Preparing to unpack .../356-r-cran-polyclip_1.10-7-1_amd64.deb ... 553s Unpacking r-cran-polyclip (1.10-7-1) ... 553s Selecting previously unselected package r-cran-praise. 553s Preparing to unpack .../357-r-cran-praise_1.0.0-4build1_all.deb ... 553s Unpacking r-cran-praise (1.0.0-4build1) ... 553s Selecting previously unselected package r-cran-r.methodss3. 553s Preparing to unpack .../358-r-cran-r.methodss3_1.8.2-1_all.deb ... 553s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 553s Selecting previously unselected package r-cran-r.oo. 553s Preparing to unpack .../359-r-cran-r.oo_1.26.0-1_all.deb ... 553s Unpacking r-cran-r.oo (1.26.0-1) ... 553s Selecting previously unselected package r-cran-r.utils. 553s Preparing to unpack .../360-r-cran-r.utils_2.12.3-1_all.deb ... 553s Unpacking r-cran-r.utils (2.12.3-1) ... 553s Selecting previously unselected package r-cran-rann. 553s 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(1.2.2.2-1build1) ... 558s Setting up r-cran-callr (3.7.6-1) ... 558s Setting up r-cran-matrixmodels (0.5-3-1) ... 558s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ... 558s Setting up r-cran-desc (1.4.3-1) ... 558s Setting up r-cran-munsell (0.5.1-1) ... 558s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 558s Setting up r-cran-clock (0.7.1-1) ... 558s Setting up r-cran-sandwich (3.1-1-1) ... 558s Setting up r-cran-proc (1.18.5-1) ... 558s Setting up r-cran-fontawesome (0.5.2-1) ... 558s Setting up r-cran-survival (3.8-3-1) ... 558s Setting up r-cran-igraph (2.0.3-1) ... 558s Setting up r-bioc-biocio (1.16.0+dfsg-2) ... 558s Setting up r-cran-r.oo (1.26.0-1) ... 558s Setting up r-cran-rdpack (2.6.2-1) ... 558s Setting up r-cran-future (1.34.0+dfsg-1) ... 558s Setting up gfortran (4:14.1.0-2ubuntu1) ... 558s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 558s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 558s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 558s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 558s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 558s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 558s Setting up r-cran-reshape2 (1.4.4-2build1) ... 558s Setting up r-cran-rsvd (1.0.5-1) ... 558s Setting up r-cran-future.apply (1.11.2+dfsg-1) ... 558s Setting up r-cran-timechange (0.3.0-1) ... 558s Setting up r-cran-th.data (1.1-2-2) ... 558s Setting up r-cran-httr (1.4.7+dfsg-1) ... 558s Setting up r-cran-gridextra (2.3-3build1) ... 558s Setting up r-cran-scales (1.3.0-1) ... 558s Setting up r-cran-memoise (2.0.1-1) ... 558s Setting up r-cran-lava (1.7.3+dfsg-1) ... 558s Setting up r-cran-promises (1.3.0+dfsg-1) ... 558s Setting up r-cran-purrr (1.0.2-1) ... 558s Setting up r-cran-e1071 (1.7-16-1) ... 558s Setting up r-cran-spatstat.data (3.1-2-1) ... 558s Setting up r-cran-fastdummies (1.7.4-1) ... 558s Setting up r-cran-multcomp (1.4-26-2) ... 558s Setting up r-cran-qqconf (1.3.2+dfsg-1) ... 558s Setting up r-cran-seuratobject (5.0.2-1) ... 558s Setting up r-cran-spatstat.geom (3.2-9-2) ... 558s Setting up r-bioc-xvector (0.46.0-2) ... 558s Setting up r-cran-pkgbuild (1.4.4-1) ... 558s Setting up r-cran-hardhat (1.4.0+dfsg-1) ... 558s Setting up r-cran-dplyr (1.1.4-4) ... 558s Setting up r-cran-rspectra (0.16-2-1) ... 558s Setting up r-cran-gplots (3.2.0-1) ... 558s Setting up r-cran-uwot (0.2.2-1) ... 558s Setting up r-cran-leiden (0.4.3.1+dfsg-1) ... 558s Setting up r-bioc-multtest (2.62.0-2) ... 558s Setting up r-cran-lubridate (1.9.3+dfsg-1) ... 558s Setting up r-cran-pkgload (1.4.0-1) ... 558s Setting up r-cran-r.utils (2.12.3-1) ... 558s Setting up r-cran-rocr (1.0-11-3) ... 558s Setting up r-base-dev (4.4.2-1build1) ... 558s Setting up r-cran-prodlim (2024.06.25-1) ... 558s Setting up r-cran-fitdistrplus (1.2-1-1) ... 558s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 558s Setting up r-bioc-sparsearray (1.6.0+dfsg-2) ... 558s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 558s Setting up r-cran-scattermore (1.2-1) ... 558s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 558s Setting up r-cran-rpart (4.1.24-1) ... 558s Setting up r-cran-spatstat.random (3.2-3-1) ... 558s Setting up r-cran-ipred (0.9-15-1) ... 558s Setting up r-cran-testthat (3.2.1.1-1) ... 558s Setting up r-bioc-genomeinfodb (1.42.1+dfsg-2) ... 558s Setting up r-cran-bslib (0.7.0+dfsg-1) ... 558s Setting up r-cran-spatstat.explore (3.2-7-1) ... 558s Setting up r-cran-ggrepel (0.9.5-2) ... 558s Setting up r-cran-tidyr (1.3.1-1) ... 558s Setting up r-cran-recipes (1.1.0+dfsg-1) ... 558s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 558s Setting up r-cran-mutoss (0.1-13-1) ... 558s Setting up r-cran-ggridges (0.5.6-1) ... 558s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 558s Setting up r-cran-cowplot (1.1.3+dfsg-1) ... 558s Setting up r-cran-sctransform (0.4.1-1) ... 558s Setting up r-cran-patchwork (1.3.0-1) ... 558s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 558s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 558s Setting up r-cran-caret (6.0-94+dfsg-1) ... 558s Setting up r-cran-shiny (1.9.1+dfsg-1) ... 558s Setting up r-cran-shinyjs (2.1.0-1) ... 558s Setting up r-cran-miniui (0.1.1.1-3build1) ... 558s Setting up r-cran-rmarkdown (2.28+dfsg-1) ... 558s Setting up r-cran-conquer (1.3.3-1) ... 558s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 558s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 558s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 558s Setting up r-cran-quantreg (5.99.1-1) ... 558s Setting up r-cran-sn (2.1.1-2) ... 558s Setting up r-bioc-deseq2 (1.46.0+dfsg-2) ... 558s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 558s Setting up r-cran-colourpicker (1.3.0+dfsg-1) ... 558s Setting up r-cran-tfisher (0.2.0-3) ... 558s Setting up r-bioc-genomicalignments (1.42.0-2) ... 558s Setting up r-cran-metap (1.11-1) ... 558s Setting up r-bioc-rtracklayer (1.66.0-2) ... 558s Setting up r-cran-plotly (4.10.4+dfsg-2) ... 558s Setting up r-cran-mixtools (2.0.0-1) ... 558s Setting up r-cran-seurat (5.1.0-1) ... 558s Processing triggers for man-db (2.13.0-1) ... 559s Processing triggers for install-info (7.1.1-1) ... 559s Processing triggers for libc-bin (2.40-4ubuntu1) ... 563s autopkgtest [15:17:27]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 563s autopkgtest [15:17:27]: test pkg-r-autopkgtest: [----------------------- 564s Test: Try to load the R library Seurat 564s 564s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 564s Copyright (C) 2024 The R Foundation for Statistical Computing 564s Platform: x86_64-pc-linux-gnu 564s 564s R is free software and comes with ABSOLUTELY NO WARRANTY. 564s You are welcome to redistribute it under certain conditions. 564s Type 'license()' or 'licence()' for distribution details. 564s 564s R is a collaborative project with many contributors. 564s Type 'contributors()' for more information and 564s 'citation()' on how to cite R or R packages in publications. 564s 564s Type 'demo()' for some demos, 'help()' for on-line help, or 564s 'help.start()' for an HTML browser interface to help. 564s Type 'q()' to quit R. 564s 564s > library('Seurat') 564s Loading required package: SeuratObject 564s Loading required package: sp 565s ‘SeuratObject’ was built under R 4.4.1 but the current version is 565s 4.4.2; it is recomended that you reinstall ‘SeuratObject’ as the ABI 565s for R may have changed 565s ‘SeuratObject’ was built with package ‘Matrix’ 1.7.0 but the current 565s version is 1.7.1; it is recomended that you reinstall ‘SeuratObject’ as 565s the ABI for ‘Matrix’ may have changed 565s 565s Attaching package: ‘SeuratObject’ 565s 565s The following objects are masked from ‘package:base’: 565s 565s intersect, t 565s 567s > 568s > 568s Other tests are currently unsupported! 568s They will be progressively added. 568s autopkgtest [15:17:31]: test pkg-r-autopkgtest: -----------------------] 568s pkg-r-autopkgtest PASS 568s autopkgtest [15:17:32]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 568s autopkgtest [15:17:32]: @@@@@@@@@@@@@@@@@@@@ summary 568s run-unit-test PASS 568s pkg-r-autopkgtest PASS 573s nova [W] Skipping flock for amd64 573s Creating nova instance adt-plucky-amd64-r-cran-seurat-20250117-150803-juju-7f2275-prod-proposed-migration-environment-15-cc6c378e-9935-468b-b05f-2214077c7b29 from image adt/ubuntu-plucky-amd64-server-20250117.img (UUID 8f35863a-398a-4b7d-9594-544c7b7656c3)... 573s nova [W] Timed out waiting for a2927473-ab3d-4164-bc54-88a9bfd8ab43 to get deleted. 573s nova [W] Skipping flock for amd64 573s Creating nova instance adt-plucky-amd64-r-cran-seurat-20250117-150803-juju-7f2275-prod-proposed-migration-environment-15-cc6c378e-9935-468b-b05f-2214077c7b29 from image adt/ubuntu-plucky-amd64-server-20250117.img (UUID 8f35863a-398a-4b7d-9594-544c7b7656c3)... 573s nova [W] Timed out waiting for ae4ced3e-40ed-41b1-873f-21d7c3c192be to get deleted.