0s autopkgtest [13:17:15]: starting date and time: 2025-01-17 13:17:15+0000 0s autopkgtest [13:17:15]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [13:17:15]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.bf6505dk/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-biobase,src:r-bioc-biocgenerics,src:r-cran-seurat --apt-upgrade r-cran-seurat --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-biobase/2.66.0-2 r-bioc-biocgenerics/0.52.0-2 r-cran-seurat/5.1.0-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-5.secgroup --name adt-plucky-amd64-r-cran-seurat-20250117-131715-juju-7f2275-prod-proposed-migration-environment-15-e2245b7c-fe0c-4bb2-b605-d642db42df8a --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 54s autopkgtest [13:18:09]: testbed dpkg architecture: amd64 54s autopkgtest [13:18:09]: testbed apt version: 2.9.18 55s autopkgtest [13:18:10]: @@@@@@@@@@@@@@@@@@@@ test bed setup 55s autopkgtest [13:18:10]: testbed release detected to be: None 56s autopkgtest [13:18:11]: updating testbed package index (apt update) 56s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 56s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 56s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 56s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 56s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.7 kB] 56s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 56s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [177 kB] 57s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [877 kB] 57s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [330 kB] 57s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [228 kB] 57s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [40.1 kB] 57s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2408 B] 57s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [1097 kB] 57s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [464 kB] 57s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [25.3 kB] 57s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [4856 B] 57s Fetched 3344 kB in 1s (3120 kB/s) 58s Reading package lists... 59s Reading package lists... 59s Building dependency tree... 59s Reading state information... 60s Calculating upgrade... 60s The following packages will be upgraded: 60s libgudev-1.0-0 usb.ids 60s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 60s Need to get 239 kB of archives. 60s After this operation, 0 B of additional disk space will be used. 60s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 usb.ids all 2025.01.14-1 [223 kB] 61s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libgudev-1.0-0 amd64 1:238-6 [15.8 kB] 61s Fetched 239 kB in 0s (492 kB/s) 61s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 61s Preparing to unpack .../usb.ids_2025.01.14-1_all.deb ... 61s Unpacking usb.ids (2025.01.14-1) over (2024.12.04-1) ... 62s Preparing to unpack .../libgudev-1.0-0_1%3a238-6_amd64.deb ... 62s Unpacking libgudev-1.0-0:amd64 (1:238-6) over (1:238-5ubuntu1) ... 62s Setting up usb.ids (2025.01.14-1) ... 62s Setting up libgudev-1.0-0:amd64 (1:238-6) ... 62s Processing triggers for libc-bin (2.40-4ubuntu1) ... 62s Reading package lists... 62s Building dependency tree... 62s Reading state information... 62s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 63s autopkgtest [13:18:18]: upgrading testbed (apt dist-upgrade and autopurge) 63s Reading package lists... 63s Building dependency tree... 63s Reading state information... 64s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 64s Starting 2 pkgProblemResolver with broken count: 0 64s Done 64s Entering ResolveByKeep 65s 65s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 65s Reading package lists... 66s Building dependency tree... 66s Reading state information... 66s Starting pkgProblemResolver with broken count: 0 66s Starting 2 pkgProblemResolver with broken count: 0 66s Done 67s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 69s autopkgtest [13:18:24]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 70s autopkgtest [13:18:25]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-seurat 72s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/universe r-cran-seurat 5.1.0-1 (dsc) [3385 B] 72s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe r-cran-seurat 5.1.0-1 (tar) [2064 kB] 72s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe r-cran-seurat 5.1.0-1 (diff) [4724 B] 72s gpgv: Signature made Tue Sep 10 23:46:06 2024 UTC 72s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 72s gpgv: issuer "plessy@debian.org" 72s gpgv: Can't check signature: No public key 72s dpkg-source: warning: cannot verify inline signature for ./r-cran-seurat_5.1.0-1.dsc: no acceptable signature found 72s autopkgtest [13:18:27]: testing package r-cran-seurat version 5.1.0-1 72s autopkgtest [13:18:27]: build not needed 74s autopkgtest [13:18:29]: test run-unit-test: preparing testbed 74s Reading package lists... 74s Building dependency tree... 74s Reading state information... 75s Starting pkgProblemResolver with broken count: 12 75s Starting 2 pkgProblemResolver with broken count: 12 75s Investigating (0) r-bioc-s4vectors:amd64 < none -> 0.42.1+dfsg-2 @un puN Ib > 75s Broken r-bioc-s4vectors:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 75s Considering r-bioc-biocgenerics:amd64 54 as a solution to r-bioc-s4vectors:amd64 34 75s Re-Instated r-bioc-biocgenerics:amd64 75s Investigating (0) r-bioc-iranges:amd64 < none -> 2.38.1-1 @un puN Ib > 75s Broken r-bioc-iranges:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 75s Considering r-bioc-biocgenerics:amd64 34 as a solution to r-bioc-iranges:amd64 24 75s Investigating (0) r-bioc-genomeinfodb:amd64 < none -> 1.40.1+dfsg-1 @un puN Ib > 75s Broken r-bioc-genomeinfodb:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 75s Considering r-bioc-biocgenerics:amd64 34 as a solution to r-bioc-genomeinfodb:amd64 13 75s Broken r-bioc-genomeinfodb:amd64 Depends on r-bioc-ucsc.utils:amd64 < none | 1.0.0+ds-2 @un uH > (> 1.0.0+ds-1) 75s Considering r-bioc-ucsc.utils:amd64 0 as a solution to r-bioc-genomeinfodb:amd64 13 75s Reinst Failed because of protected r-bioc-biocgenerics:amd64 75s Considering r-bioc-ucsc.utils:amd64 0 as a solution to r-bioc-genomeinfodb:amd64 13 75s Broken r-bioc-genomeinfodb:amd64 Depends on r-bioc-genomeinfodbdata:amd64 < none | 1.2.13-2 @un uH > (>= 1.2.12) 75s Considering r-bioc-genomeinfodbdata:amd64 0 as a solution to r-bioc-genomeinfodb:amd64 13 75s Re-Instated r-bioc-genomeinfodbdata:amd64 75s Investigating (0) r-bioc-genomicranges:amd64 < none -> 1.56.2+dfsg-1 @un puN Ib > 75s Broken r-bioc-genomicranges:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 75s Considering r-bioc-biocgenerics:amd64 34 as a solution to r-bioc-genomicranges:amd64 11 75s Broken r-bioc-genomicranges:amd64 Depends on r-bioc-xvector:amd64 < none | 0.44.0-1 @un uH > (>= 0.29.2) 75s Considering r-bioc-xvector:amd64 0 as a solution to r-bioc-genomicranges:amd64 11 75s Reinst Failed because of protected r-bioc-biocgenerics:amd64 75s Considering r-bioc-xvector:amd64 0 as a solution to r-bioc-genomicranges:amd64 11 75s Investigating (0) r-bioc-delayedarray:amd64 < none -> 0.30.1+dfsg-1 @un puN Ib > 75s Broken r-bioc-delayedarray:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 75s Considering r-bioc-biocgenerics:amd64 34 as a solution to r-bioc-delayedarray:amd64 7 75s Broken r-bioc-delayedarray:amd64 Depends on r-bioc-matrixgenerics:amd64 < none | 1.16.0-2 @un uH > (>= 1.16.0) 75s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-delayedarray:amd64 7 75s Reinst Failed because of protected r-bioc-biocgenerics:amd64 75s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-delayedarray:amd64 7 75s Broken r-bioc-delayedarray:amd64 Depends on r-bioc-s4arrays:amd64 < none | 1.4.1+dfsg-1 @un uH > (>= 1.4.1) 75s Considering r-bioc-s4arrays:amd64 0 as a solution to r-bioc-delayedarray:amd64 7 75s Reinst Failed because of protected r-bioc-biocgenerics:amd64 75s Considering r-bioc-s4arrays:amd64 0 as a solution to r-bioc-delayedarray:amd64 7 75s Broken r-bioc-delayedarray:amd64 Depends on r-bioc-sparsearray:amd64 < none | 1.4.8+dfsg-1 @un uH > (>= 1.4.8) 75s Considering r-bioc-sparsearray:amd64 0 as a solution to r-bioc-delayedarray:amd64 7 75s Reinst Failed because of protected r-bioc-biocgenerics:amd64 75s Considering r-bioc-sparsearray:amd64 0 as a solution to r-bioc-delayedarray:amd64 7 75s Investigating (0) r-bioc-summarizedexperiment:amd64 < none -> 1.34.0+dfsg-1 @un puN Ib > 75s Broken r-bioc-summarizedexperiment:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 75s Considering r-bioc-biocgenerics:amd64 34 as a solution to r-bioc-summarizedexperiment:amd64 5 75s Broken r-bioc-summarizedexperiment:amd64 Depends on r-bioc-matrixgenerics:amd64 < none | 1.16.0-2 @un uH > (>= 1.16.0) 75s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-summarizedexperiment:amd64 5 75s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-summarizedexperiment:amd64 5 75s Broken r-bioc-summarizedexperiment:amd64 Depends on r-bioc-s4arrays:amd64 < none | 1.4.1+dfsg-1 @un uH > (>= 1.4.1) 75s Considering r-bioc-s4arrays:amd64 0 as a solution to r-bioc-summarizedexperiment:amd64 5 75s Considering r-bioc-s4arrays:amd64 0 as a solution to r-bioc-summarizedexperiment:amd64 5 75s Investigating (0) r-bioc-limma:amd64 < none -> 3.60.6+dfsg-1 @un puN Ib > 75s Broken r-bioc-limma:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 75s Considering r-bioc-biocgenerics:amd64 34 as a solution to r-bioc-limma:amd64 3 75s Broken r-bioc-limma:amd64 Depends on r-cran-statmod:amd64 < none | 1.5.0-1 @un uH > 75s Considering r-cran-statmod:amd64 1 as a solution to r-bioc-limma:amd64 3 75s Re-Instated r-cran-statmod:amd64 75s Investigating (0) r-bioc-rtracklayer:amd64 < none -> 1.64.0-1 @un puN Ib > 75s Broken r-bioc-rtracklayer:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 75s Considering r-bioc-biocgenerics:amd64 34 as a solution to r-bioc-rtracklayer:amd64 1 75s Broken r-bioc-rtracklayer:amd64 Depends on r-cran-xml:amd64 < none | 3.99-0.18-1 @un uH > (>= 1.98-0) 75s Considering r-cran-xml:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 75s Re-Instated r-cran-xml:amd64 75s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-xvector:amd64 < none | 0.44.0-1 @un uH > (>= 0.44.0) 75s Considering r-bioc-xvector:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 75s Considering r-bioc-xvector:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 75s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-biostrings:amd64 < none | 2.72.1+dfsg-1 @un uH > (>= 2.72.1) 75s Considering r-bioc-biostrings:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 75s Reinst Failed because of protected r-bioc-biocgenerics:amd64 75s Considering r-bioc-biostrings:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 75s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-zlibbioc:amd64 < none | 1.50.0+dfsg-2 @un uH > (>= 1.50.0) 75s Considering r-bioc-zlibbioc:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 75s Reinst Failed because of protected r-bioc-biocgenerics:amd64 75s Considering r-bioc-zlibbioc:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 75s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-rsamtools:amd64 < none | 2.20.0+dfsg-1 @un uH > (>= 2.20.0) 75s Considering r-bioc-rsamtools:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 75s Reinst Failed because of protected r-bioc-biocgenerics:amd64 75s Considering r-bioc-rsamtools:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 75s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-genomicalignments:amd64 < none | 1.40.0-1 @un uH > (>= 1.40.0) 75s Considering r-bioc-genomicalignments:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 75s Reinst Failed because of protected r-bioc-biocgenerics:amd64 75s Considering r-bioc-genomicalignments:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 75s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-biocio:amd64 < none | 1.14.0+dfsg-1 @un uH > (>= 1.14.0) 75s Considering r-bioc-biocio:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 75s Reinst Failed because of protected r-bioc-biocgenerics:amd64 75s Considering r-bioc-biocio:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 75s Broken r-bioc-rtracklayer:amd64 Depends on r-cran-restfulr:amd64 < none | 0.0.15-1 @un uH > (>= 0.0.13) 75s Considering r-cran-restfulr:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 75s Re-Instated r-cran-rcurl:amd64 75s Re-Instated r-cran-rjson:amd64 75s Re-Instated r-cran-restfulr:amd64 75s Investigating (0) r-bioc-deseq2:amd64 < none -> 1.44.0+dfsg-1 @un puN Ib > 75s Broken r-bioc-deseq2:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 75s Considering r-bioc-biocgenerics:amd64 34 as a solution to r-bioc-deseq2:amd64 1 75s Broken r-bioc-deseq2:amd64 Depends on r-bioc-biocparallel:amd64 < none | 1.38.0-2 @un uH > (>= 1.38.0) 75s Considering r-bioc-biocparallel:amd64 0 as a solution to r-bioc-deseq2:amd64 1 75s Reinst Failed because of protected r-bioc-biocgenerics:amd64 75s Considering r-bioc-biocparallel:amd64 0 as a solution to r-bioc-deseq2:amd64 1 75s Broken r-bioc-deseq2:amd64 Depends on r-cran-locfit:amd64 < none | 1.5-9.10-1 @un uH > 75s Considering r-cran-locfit:amd64 2 as a solution to r-bioc-deseq2:amd64 1 75s Re-Instated r-cran-locfit:amd64 75s Broken r-bioc-deseq2:amd64 Depends on r-bioc-matrixgenerics:amd64 < none | 1.16.0-2 @un uH > (>= 1.16.0) 75s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-deseq2:amd64 1 75s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-deseq2:amd64 1 75s Investigating (0) r-bioc-singlecellexperiment:amd64 < none -> 1.26.0+ds-1 @un puN Ib > 75s Broken r-bioc-singlecellexperiment:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 75s Considering r-bioc-biocgenerics:amd64 34 as a solution to r-bioc-singlecellexperiment:amd64 1 75s Investigating (0) r-bioc-monocle:amd64 < none -> 2.32.0-1 @un puN Ib > 75s Broken r-bioc-monocle:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 75s Considering r-bioc-biocgenerics:amd64 34 as a solution to r-bioc-monocle:amd64 1 75s Broken r-bioc-monocle:amd64 Depends on r-cran-ddrtree:amd64 < none | 0.1.5-2 @un uH > (>= 0.1.4) 75s Considering r-cran-ddrtree:amd64 0 as a solution to r-bioc-monocle:amd64 1 75s Re-Instated r-cran-ddrtree:amd64 75s Broken r-bioc-monocle:amd64 Depends on r-bioc-hsmmsinglecell:amd64 < none | 1.24.0-1 @un uH > (>= 0.101.5) 75s Considering r-bioc-hsmmsinglecell:amd64 0 as a solution to r-bioc-monocle:amd64 1 75s Reinst Failed because of protected r-bioc-biocgenerics:amd64 75s Considering r-bioc-hsmmsinglecell:amd64 0 as a solution to r-bioc-monocle:amd64 1 75s Broken r-bioc-monocle:amd64 Depends on r-cran-combinat:amd64 < none | 0.0-8-7build1 @un uH > 75s Considering r-cran-combinat:amd64 1 as a solution to r-bioc-monocle:amd64 1 75s Re-Instated r-cran-combinat:amd64 75s Broken r-bioc-monocle:amd64 Depends on r-cran-fastica:amd64 < none | 1.2-7-1 @un uH > 75s Considering r-cran-fastica:amd64 3 as a solution to r-bioc-monocle:amd64 1 75s Re-Instated r-cran-fastica:amd64 75s Broken r-bioc-monocle:amd64 Depends on r-cran-leidenbase:amd64 < none | 0.1.27-1 @un uH > (>= 0.1.9) 75s Considering r-cran-leidenbase:amd64 0 as a solution to r-bioc-monocle:amd64 1 75s Re-Instated r-cran-leidenbase:amd64 75s Broken r-bioc-monocle:amd64 Depends on r-cran-pheatmap:amd64 < none | 1.0.12-2build1 @un uH > 75s Considering r-cran-pheatmap:amd64 1 as a solution to r-bioc-monocle:amd64 1 75s Re-Instated r-cran-pheatmap:amd64 75s Broken r-bioc-monocle:amd64 Depends on r-cran-slam:amd64 < none | 0.1-55-1 @un uH > 75s Considering r-cran-slam:amd64 1 as a solution to r-bioc-monocle:amd64 1 75s Re-Instated r-cran-slam:amd64 75s Broken r-bioc-monocle:amd64 Depends on r-cran-viridis:amd64 < none | 0.6.5-1 @un uH > 75s Considering r-cran-viridis:amd64 2 as a solution to r-bioc-monocle:amd64 1 75s Re-Instated r-cran-viridis:amd64 75s Broken r-bioc-monocle:amd64 Depends on r-bioc-biocviews:amd64 < none | 1.72.0-1 @un uH > 75s Considering r-bioc-biocviews:amd64 1 as a solution to r-bioc-monocle:amd64 1 75s Reinst Failed because of protected r-bioc-biocgenerics:amd64 75s Considering r-bioc-biocviews:amd64 1 as a solution to r-bioc-monocle:amd64 1 75s Investigating (0) r-bioc-multtest:amd64 < none -> 2.60.0-1 @un puN Ib > 75s Broken r-bioc-multtest:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 75s Considering r-bioc-biocgenerics:amd64 34 as a solution to r-bioc-multtest:amd64 0 75s Done 75s Some packages could not be installed. This may mean that you have 75s requested an impossible situation or if you are using the unstable 75s distribution that some required packages have not yet been created 75s or been moved out of Incoming. 75s The following information may help to resolve the situation: 75s 75s The following packages have unmet dependencies: 75s r-bioc-delayedarray : Depends: r-api-bioc-3.19 75s Depends: r-bioc-matrixgenerics (>= 1.16.0) but it is not going to be installed 75s Depends: r-bioc-s4arrays (>= 1.4.1) but it is not going to be installed 75s Depends: r-bioc-sparsearray (>= 1.4.8) but it is not going to be installed 75s r-bioc-deseq2 : Depends: r-api-bioc-3.19 75s Depends: r-bioc-biocparallel (>= 1.38.0) but it is not going to be installed 75s Depends: r-bioc-matrixgenerics (>= 1.16.0) but it is not going to be installed 75s r-bioc-genomeinfodb : Depends: r-api-bioc-3.19 75s Depends: r-bioc-ucsc.utils (> 1.0.0+ds-1) but it is not going to be installed 75s r-bioc-genomicranges : Depends: r-api-bioc-3.19 75s Depends: r-bioc-xvector (>= 0.29.2) but it is not going to be installed 75s r-bioc-iranges : Depends: r-api-bioc-3.19 75s r-bioc-limma : Depends: r-api-bioc-3.19 75s r-bioc-monocle : Depends: r-api-bioc-3.19 75s Depends: r-bioc-hsmmsinglecell (>= 0.101.5) but it is not going to be installed 75s Depends: r-bioc-biocviews but it is not going to be installed 75s r-bioc-multtest : Depends: r-api-bioc-3.19 75s r-bioc-rtracklayer : Depends: r-api-bioc-3.19 75s Depends: r-bioc-xvector (>= 0.44.0) but it is not going to be installed 75s Depends: r-bioc-biostrings (>= 2.72.1) but it is not going to be installed 75s Depends: r-bioc-zlibbioc (>= 1.50.0) but it is not going to be installed 75s Depends: r-bioc-rsamtools (>= 2.20.0) but it is not going to be installed 75s Depends: r-bioc-genomicalignments (>= 1.40.0) but it is not going to be installed 75s Depends: r-bioc-biocio (>= 1.14.0) but it is not going to be installed 75s r-bioc-s4vectors : Depends: r-api-bioc-3.19 75s r-bioc-singlecellexperiment : Depends: r-api-bioc-3.19 75s r-bioc-summarizedexperiment : Depends: r-api-bioc-3.19 75s Depends: r-bioc-matrixgenerics (>= 1.16.0) but it is not going to be installed 75s Depends: r-bioc-s4arrays (>= 1.4.1) but it is not going to be installed 75s E: Unable to correct problems, you have held broken packages. 75s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed 76s Reading package lists... 76s Building dependency tree... 76s Reading state information... 76s Starting pkgProblemResolver with broken count: 0 76s Starting 2 pkgProblemResolver with broken count: 0 76s Done 77s The following NEW packages will be installed: 77s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 77s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax 77s javascript-common libaec0 libamd3 libasan8 libblas3 libboost-dev 77s libboost1.83-dev libcairo2 libcolamd3 libdatrie1 libdeflate0 77s libfftw3-double3 libfontconfig1 libgcc-14-dev libgfortran5 libglpk40 77s libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 77s libhwasan0 libice6 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap 77s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 77s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 77s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 77s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack3 77s liblerc4 liblsan0 libltdl7 liblua5.4-0 libpango-1.0-0 libpangocairo-1.0-0 77s libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libquadmath0 77s libsharpyuv0 libsm6 libstdc++-14-dev libsuitesparseconfig7 libsz2 libtcl8.6 77s libthai-data libthai0 libtiff6 libtk8.6 libtsan2 libubsan1 libwebp7 77s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 littler 77s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 77s r-base-core r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio 77s r-bioc-biocparallel r-bioc-biocviews r-bioc-biostrings r-bioc-delayedarray 77s r-bioc-deseq2 r-bioc-genomeinfodb r-bioc-genomeinfodbdata 77s r-bioc-genomicalignments r-bioc-genomicranges r-bioc-graph 77s r-bioc-hsmmsinglecell r-bioc-iranges r-bioc-limma r-bioc-matrixgenerics 77s r-bioc-monocle r-bioc-multtest r-bioc-rbgl r-bioc-rhtslib r-bioc-rsamtools 77s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 77s r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-summarizedexperiment 77s r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-ape 77s r-cran-askpass r-cran-base64enc r-cran-beeswarm r-cran-bh r-cran-biocmanager 77s r-cran-bit r-cran-bit64 r-cran-bitops r-cran-brio r-cran-bslib r-cran-cachem 77s r-cran-cairo r-cran-callr r-cran-caret r-cran-catools r-cran-class 77s r-cran-cli r-cran-clock r-cran-cluster r-cran-codetools r-cran-colorspace 77s r-cran-colourpicker r-cran-combinat r-cran-commonmark r-cran-conquer 77s r-cran-cowplot r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl 77s r-cran-data.table r-cran-ddrtree r-cran-deldir r-cran-deoptimr r-cran-desc 77s r-cran-diagram r-cran-diffobj r-cran-digest r-cran-dotcall64 r-cran-dplyr 77s r-cran-dqrng r-cran-e1071 r-cran-evaluate r-cran-fansi r-cran-farver 77s r-cran-fastdummies r-cran-fastica r-cran-fastmap r-cran-fitdistrplus 77s r-cran-fnn r-cran-fontawesome r-cran-foreach r-cran-formatr r-cran-fs 77s r-cran-futile.logger r-cran-futile.options r-cran-future r-cran-future.apply 77s r-cran-gdata r-cran-generics r-cran-ggbeeswarm r-cran-ggplot2 r-cran-ggrastr 77s r-cran-ggrepel r-cran-ggridges r-cran-globals r-cran-glue r-cran-goftest 77s r-cran-gower r-cran-gplots r-cran-gridextra r-cran-gtable r-cran-gtools 77s r-cran-hardhat r-cran-hdf5r r-cran-here r-cran-highr r-cran-htmltools 77s r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-ica r-cran-igraph 77s r-cran-ipred r-cran-irlba r-cran-isoband r-cran-iterators r-cran-jquerylib 77s r-cran-jsonlite r-cran-kernlab r-cran-kernsmooth r-cran-knitr 77s r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lava 77s r-cran-lazyeval r-cran-leiden r-cran-leidenbase r-cran-lifecycle 77s r-cran-listenv r-cran-littler r-cran-lmtest r-cran-locfit r-cran-lubridate 77s r-cran-magrittr r-cran-mass r-cran-mathjaxr r-cran-matrix 77s r-cran-matrixmodels r-cran-matrixstats r-cran-memoise r-cran-metap 77s r-cran-mgcv r-cran-mime r-cran-miniui r-cran-mixtools r-cran-mnormt 77s r-cran-modelmetrics r-cran-multcomp r-cran-munsell r-cran-mutoss 77s r-cran-mvtnorm r-cran-nlme r-cran-nnet r-cran-numderiv r-cran-openssl 77s r-cran-parallelly r-cran-patchwork r-cran-pbapply r-cran-pheatmap 77s r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 77s r-cran-pkgload r-cran-plotly r-cran-plotrix r-cran-plyr r-cran-png 77s r-cran-polyclip r-cran-praise r-cran-proc r-cran-processx r-cran-prodlim 77s r-cran-progressr r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr 77s r-cran-qqconf r-cran-quantreg r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils 77s r-cran-r6 r-cran-ragg r-cran-rann r-cran-rappdirs r-cran-rbibutils 77s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppannoy r-cran-rcpparmadillo 77s r-cran-rcppeigen r-cran-rcpphnsw r-cran-rcppprogress r-cran-rcpptoml 77s r-cran-rcurl r-cran-rdpack r-cran-recipes r-cran-reshape2 r-cran-restfulr 77s r-cran-reticulate r-cran-rjson r-cran-rlang r-cran-rmarkdown 77s r-cran-robustbase r-cran-rocr r-cran-rpart r-cran-rprojroot r-cran-rspectra 77s r-cran-rsvd r-cran-rtsne r-cran-runit r-cran-sandwich r-cran-sass 77s r-cran-scales r-cran-scattermore r-cran-sctransform r-cran-segmented 77s r-cran-seurat r-cran-seuratobject r-cran-shape r-cran-shiny r-cran-shinyjs 77s r-cran-sitmo r-cran-slam r-cran-sn r-cran-snow r-cran-sourcetools r-cran-sp 77s r-cran-spam r-cran-sparsem r-cran-spatstat.data r-cran-spatstat.explore 77s r-cran-spatstat.geom r-cran-spatstat.random r-cran-spatstat.sparse 77s r-cran-spatstat.utils r-cran-squarem r-cran-statmod r-cran-stringi 77s r-cran-stringr r-cran-survival r-cran-sys r-cran-systemfonts r-cran-tensor 77s r-cran-testthat r-cran-textshaping r-cran-tfisher r-cran-th.data 77s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-timechange 77s r-cran-timedate r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-uwot 77s r-cran-vctrs r-cran-vgam r-cran-vipor r-cran-viridis r-cran-viridislite 77s r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml 77s r-cran-zoo unzip x11-common xdg-utils zip zlib1g-dev 77s The following packages will be upgraded: 77s gcc-14-base libatomic1 libgcc-s1 libstdc++6 77s 4 upgraded, 371 newly installed, 0 to remove and 126 not upgraded. 77s Need to get 414 MB of archives. 77s After this operation, 1094 MB of additional disk space will be used. 77s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 gcc-14-base amd64 14.2.0-13ubuntu1 [53.0 kB] 78s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libstdc++6 amd64 14.2.0-13ubuntu1 [787 kB] 78s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libatomic1 amd64 14.2.0-13ubuntu1 [10.3 kB] 78s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgcc-s1 amd64 14.2.0-13ubuntu1 [78.2 kB] 78s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 78s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 78s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 78s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 78s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 78s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 78s Get:11 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 78s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 78s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 11+nmu1 [5936 B] 78s Get:14 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 78s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgomp1 amd64 14.2.0-13ubuntu1 [148 kB] 78s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsuitesparseconfig7 amd64 1:7.8.3+dfsg-2 [13.4 kB] 78s Get:17 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamd3 amd64 1:7.8.3+dfsg-2 [31.1 kB] 78s Get:18 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libasan8 amd64 14.2.0-13ubuntu1 [2998 kB] 78s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-4 [332 kB] 78s Get:20 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libitm1 amd64 14.2.0-13ubuntu1 [29.1 kB] 78s Get:21 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 liblsan0 amd64 14.2.0-13ubuntu1 [1317 kB] 78s Get:22 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libtsan2 amd64 14.2.0-13ubuntu1 [2732 kB] 78s Get:23 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libubsan1 amd64 14.2.0-13ubuntu1 [1177 kB] 78s Get:24 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libhwasan0 amd64 14.2.0-13ubuntu1 [1634 kB] 78s Get:25 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libquadmath0 amd64 14.2.0-13ubuntu1 [153 kB] 78s Get:26 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgcc-14-dev amd64 14.2.0-13ubuntu1 [2815 kB] 78s Get:27 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libstdc++-14-dev amd64 14.2.0-13ubuntu1 [2508 kB] 78s Get:28 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost1.83-dev amd64 1.83.0-4ubuntu2 [10.7 MB] 79s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 79s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 79s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 79s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 79s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 79s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 79s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libcolamd3 amd64 1:7.8.3+dfsg-2 [19.5 kB] 79s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 79s Get:37 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 79s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libfftw3-double3 amd64 3.3.10-2fakesync1build1 [839 kB] 79s Get:39 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgfortran5 amd64 14.2.0-13ubuntu1 [909 kB] 79s Get:40 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libltdl7 amd64 2.5.4-2 [46.0 kB] 79s Get:41 http://ftpmaster.internal/ubuntu plucky/universe amd64 libglpk40 amd64 5.0-1build2 [369 kB] 79s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 79s Get:43 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 79s Get:44 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 79s Get:45 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-5ubuntu1 [1367 kB] 79s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-5ubuntu1 [59.5 kB] 79s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 79s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 79s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 79s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 79s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 79s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 79s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 79s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 79s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 79s Get:56 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 79s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 79s Get:58 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 79s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 79s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 79s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 79s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 79s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 79s Get:64 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 79s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-4 [3177 kB] 79s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 79s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 79s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 79s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 79s Get:70 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpango-1.0-0 amd64 1.56.0-3 [255 kB] 79s Get:71 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpangoft2-1.0-0 amd64 1.56.0-3 [52.5 kB] 79s Get:72 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpangocairo-1.0-0 amd64 1.56.0-3 [29.1 kB] 79s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 79s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 79s Get:75 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 79s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 79s Get:77 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 79s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 79s Get:79 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 79s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 79s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 79s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 79s Get:83 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 79s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 79s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu1 [185 kB] 79s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 79s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-0ubuntu1 [67.5 kB] 79s Get:88 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-base-core amd64 4.4.2-1build1 [28.9 MB] 80s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 80s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 80s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 80s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 80s Get:93 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 80s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 80s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 81s Get:96 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 81s Get:97 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 81s Get:98 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 81s Get:99 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 81s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 81s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 81s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 81s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 81s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 81s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 81s Get:106 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 81s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.0-1 [221 kB] 81s Get:108 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 81s Get:109 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-graph amd64 1.84.1-1 [1298 kB] 81s Get:110 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-rbgl amd64 1.82.0+dfsg-2 [588 kB] 81s Get:111 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml amd64 3.99-0.18-1 [1748 kB] 82s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bitops amd64 1.0-8-1 [30.3 kB] 82s Get:113 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB] 82s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-runit all 0.4.33-1 [377 kB] 82s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 82s Get:116 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biocviews all 1.74.0-2 [670 kB] 82s Get:117 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB] 82s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 82s Get:119 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 82s Get:120 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 82s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 5.2.3+dfsg-1ubuntu1 [180 kB] 82s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.8.9+dfsg-1 [445 kB] 82s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 82s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 82s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 82s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.2.0+dfsg-1 [405 kB] 82s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 82s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 82s Get:129 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 82s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 82s Get:131 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-genomeinfodb all 1.42.1+dfsg-2 [3883 kB] 82s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 82s Get:133 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 83s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 83s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-1-1 [4199 kB] 83s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.4.1-1 [513 kB] 83s Get:137 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-matrixgenerics all 1.18.0-2 [446 kB] 83s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 83s Get:139 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 83s Get:140 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-sparsearray amd64 1.6.0+dfsg-2 [1392 kB] 83s Get:141 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 83s Get:142 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB] 83s Get:143 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 83s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-locfit amd64 1.5-9.10-1 [518 kB] 83s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.3-1 [1348 kB] 83s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 83s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.4-1 [1708 kB] 83s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 83s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 83s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 83s Get:151 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 83s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.166-1 [2314 kB] 83s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 84s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 84s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 84s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 84s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB] 84s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 84s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 84s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 84s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 84s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 84s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 84s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 84s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 84s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 84s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 84s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 84s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 84s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 84s Get:171 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 84s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpparmadillo amd64 14.2.2-1-1 [864 kB] 84s Get:173 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-deseq2 amd64 1.46.0+dfsg-2 [1250 kB] 84s Get:174 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB] 84s Get:175 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB] 84s Get:176 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB] 84s Get:177 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-hsmmsinglecell all 1.26.0-2 [16.7 MB] 85s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 85s Get:179 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-limma amd64 3.62.2+dfsg-1 [1969 kB] 85s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vgam amd64 1.1-11-1 [7726 kB] 85s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-irlba amd64 2.3.5.1-4 [295 kB] 85s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 85s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ddrtree amd64 0.1.5-2 [154 kB] 85s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-igraph amd64 2.0.3-1 [5098 kB] 85s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 85s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cluster amd64 2.1.8-1 [579 kB] 85s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-combinat all 0.0-8-7build1 [43.1 kB] 85s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastica amd64 1.2-7-1 [46.6 kB] 85s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rtsne amd64 0.17-1 [109 kB] 85s Get:190 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB] 85s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 85s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-reshape2 amd64 1.4.4-2build1 [114 kB] 85s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-leidenbase amd64 0.1.27-1 [2366 kB] 85s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 85s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 85s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 85s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pheatmap all 1.0.12-2build1 [78.2 kB] 85s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 85s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-slam amd64 0.1-55-1 [188 kB] 85s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 85s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 85s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rann amd64 2.6.2-1 [46.3 kB] 85s Get:203 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-monocle amd64 2.34.0-2 [1522 kB] 86s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB] 86s Get:205 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-multtest amd64 2.62.0-2 [844 kB] 86s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB] 86s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 86s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 86s Get:209 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-rtracklayer amd64 1.66.0-2 [5227 kB] 87s Get:210 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-singlecellexperiment all 1.28.1+ds-2 [829 kB] 87s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 87s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ape amd64 5.8-1 [2923 kB] 87s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 87s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-beeswarm amd64 0.4.0-1 [82.3 kB] 87s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 87s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 87s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 87s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 87s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 87s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 87s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 87s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 87s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.4+dfsg-1 [245 kB] 87s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 87s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 87s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.7.0+dfsg-1 [4255 kB] 87s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cairo amd64 1.6-2-1 [88.8 kB] 87s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.8.0-1 [395 kB] 87s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.4-1 [353 kB] 87s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 87s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 87s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-e1071 amd64 1.7-16-1 [565 kB] 87s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-iterators all 1.0.14-1 [336 kB] 87s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-foreach all 1.5.2-1 [124 kB] 87s Get:235 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-data.table amd64 1.16.4+dfsg-1 [2032 kB] 87s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-modelmetrics amd64 1.2.2.2-1build1 [128 kB] 87s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-proc amd64 1.18.5-1 [966 kB] 87s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tzdb amd64 0.4.0-2 [521 kB] 87s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-clock amd64 0.7.1-1 [1804 kB] 87s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gower amd64 1.0.1-1 [207 kB] 87s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-hardhat all 1.4.0+dfsg-1 [565 kB] 87s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB] 87s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nnet amd64 7.3-20-1 [116 kB] 87s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shape all 1.4.6.1-1 [749 kB] 87s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diagram all 1.6.5-2 [656 kB] 87s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernsmooth amd64 2.23-26-1 [94.5 kB] 87s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-globals all 0.16.3-1 [120 kB] 87s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 87s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-parallelly amd64 1.38.0-1 [385 kB] 87s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 87s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future.apply all 1.11.2+dfsg-1 [172 kB] 87s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-numderiv all 2016.8-1.1-3 [115 kB] 87s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-progressr all 0.14.0-1 [338 kB] 88s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-squarem all 2021.1-1 [179 kB] 88s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lava all 1.7.3+dfsg-1 [2166 kB] 88s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-prodlim amd64 2024.06.25-1 [415 kB] 88s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ipred amd64 0.9-15-1 [386 kB] 88s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-timechange amd64 0.3.0-1 [178 kB] 88s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lubridate amd64 1.9.3+dfsg-1 [1010 kB] 88s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 88s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 88s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-timedate amd64 4041.110-1 [1208 kB] 88s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-recipes all 1.1.0+dfsg-1 [2035 kB] 88s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-caret amd64 6.0-94+dfsg-1 [3434 kB] 88s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-catools amd64 1.18.2-1 [201 kB] 88s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.0-1 [111 kB] 88s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.49+dfsg-1 [545 kB] 88s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 88s Get:269 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 88s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 88s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 88s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.53-1 [145 kB] 88s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 88s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 88s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.0+dfsg-1 [287 kB] 88s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 88s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 88s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 88s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 88s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 88s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.9.1+dfsg-1 [3111 kB] 89s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.28+dfsg-1 [1501 kB] 89s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 89s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-miniui all 0.1.1.1-3build1 [36.1 kB] 89s Get:285 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shinyjs all 2.1.0-1 [967 kB] 89s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colourpicker all 1.3.0+dfsg-1 [1191 kB] 89s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-conquer amd64 1.3.3-1 [499 kB] 89s Get:288 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cowplot all 1.1.3+dfsg-1 [614 kB] 89s Get:289 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 89s Get:290 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 89s Get:291 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 89s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deoptimr all 1.1-3-1-1 [76.6 kB] 89s Get:293 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 89s Get:294 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 89s Get:295 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dotcall64 amd64 1.1-1-1 [38.1 kB] 89s Get:296 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sitmo amd64 2.0.2-1 [130 kB] 89s Get:297 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dqrng amd64 0.3.2+dfsg-1 [161 kB] 89s Get:298 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastdummies all 1.7.4-1 [49.7 kB] 89s Get:299 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fitdistrplus all 1.2-1-1 [2038 kB] 89s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB] 89s Get:301 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtools amd64 3.9.5-1 [340 kB] 89s Get:302 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gdata all 3.0.1-1 [491 kB] 89s Get:303 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vipor all 0.4.7-1 [4624 kB] 89s Get:304 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggbeeswarm all 0.7.2-1 [1732 kB] 90s Get:305 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 90s Get:306 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-systemfonts amd64 1.1.0-1 [245 kB] 90s Get:307 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-textshaping amd64 0.3.7-2 [95.5 kB] 90s Get:308 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ragg amd64 1.3.3-1 [510 kB] 90s Get:309 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggrastr all 1.0.2-1 [2566 kB] 90s Get:310 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggrepel amd64 0.9.5-2 [254 kB] 90s Get:311 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggridges all 0.5.6-1 [2195 kB] 90s Get:312 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-goftest amd64 1.2-3-1 [59.5 kB] 90s Get:313 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gplots all 3.2.0-1 [484 kB] 90s Get:314 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-hdf5r amd64 1.3.11+dfsg-1 [1979 kB] 90s Get:315 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 90s Get:316 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-here all 1.0.1-2 [50.3 kB] 90s Get:317 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ica all 1.0-3-1 [85.4 kB] 90s Get:318 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernlab amd64 0.9-33-1 [1947 kB] 90s Get:319 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpptoml amd64 0.2.2+dfsg-1 [110 kB] 90s Get:320 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-reticulate amd64 1.39.0+dfsg-1 [1238 kB] 90s Get:321 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-leiden all 0.4.3.1+dfsg-1 [71.9 kB] 90s Get:322 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-zoo amd64 1.8-12-2 [984 kB] 90s Get:323 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lmtest amd64 0.9.40-1 [396 kB] 90s Get:324 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mathjaxr all 1.6-0-1 [605 kB] 90s Get:325 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixmodels all 0.5-3-1 [361 kB] 90s Get:326 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rbibutils amd64 2.3-1 [1023 kB] 90s Get:327 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rdpack all 2.6.2-1 [757 kB] 90s Get:328 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mnormt amd64 2.1.1-2 [170 kB] 90s Get:329 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sparsem amd64 1.84-2-1 [813 kB] 90s Get:330 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-quantreg amd64 5.99.1-1 [1455 kB] 90s Get:331 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sn all 2.1.1-2 [1815 kB] 90s Get:332 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-mvtnorm amd64 1.3-3-1 [923 kB] 90s Get:333 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tfisher all 0.2.0-3 [79.8 kB] 90s Get:334 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plotrix all 3.8-4-1 [1120 kB] 90s Get:335 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-th.data all 1.1-2-2 [8794 kB] 91s Get:336 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sandwich all 3.1-1-1 [1483 kB] 91s Get:337 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-multcomp all 1.4-26-2 [699 kB] 91s Get:338 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mutoss all 0.1-13-1 [1123 kB] 91s Get:339 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-robustbase amd64 0.99-4-1-1 [3038 kB] 91s Get:340 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-qqconf amd64 1.3.2+dfsg-1 [157 kB] 91s Get:341 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-metap all 1.11-1 [570 kB] 91s Get:342 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plotly all 4.10.4+dfsg-2 [3666 kB] 91s Get:343 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-segmented all 2.1-3-1 [1366 kB] 91s Get:344 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mixtools amd64 2.0.0-1 [1399 kB] 91s Get:345 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-patchwork all 1.3.0-1 [3220 kB] 91s Get:346 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 91s Get:347 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.4-1 [212 kB] 91s Get:348 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 91s Get:349 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB] 91s Get:350 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 91s Get:351 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 91s Get:352 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.oo all 1.26.0-1 [955 kB] 91s Get:353 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.utils all 2.12.3-1 [1386 kB] 91s Get:354 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppannoy amd64 0.0.22-1 [235 kB] 91s Get:355 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpphnsw amd64 0.5.0+ds-1 [171 kB] 91s Get:356 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppprogress all 0.4.2-2build1 [22.0 kB] 91s Get:357 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rocr all 1.0-11-3 [456 kB] 91s Get:358 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rspectra amd64 0.16-2-1 [448 kB] 91s Get:359 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsvd all 1.0.5-1 [3589 kB] 91s Get:360 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scattermore amd64 1.2-1 [331 kB] 91s Get:361 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sctransform amd64 0.4.1-1 [504 kB] 91s Get:362 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sp amd64 1:2.1-4+dfsg-1 [1472 kB] 91s Get:363 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spam amd64 2.11-0-1 [2758 kB] 91s Get:364 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-seuratobject amd64 5.0.2-1 [1744 kB] 91s Get:365 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.utils amd64 3.1-0-1 [381 kB] 91s Get:366 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.data all 3.1-2-1 [4039 kB] 92s Get:367 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.geom amd64 3.2-9-2 [3946 kB] 92s Get:368 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.random amd64 3.2-3-1 [1169 kB] 92s Get:369 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tensor all 1.5-4 [15.7 kB] 92s Get:370 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.sparse amd64 3.0-3-1 [215 kB] 92s Get:371 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.explore amd64 3.2-7-1 [3432 kB] 92s Get:372 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-uwot amd64 0.2.2-1 [947 kB] 92s Get:373 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-seurat amd64 5.1.0-1 [3255 kB] 92s Get:374 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-1 [150 kB] 92s Get:375 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.1.1-1 [1636 kB] 93s Preconfiguring packages ... 93s Fetched 414 MB in 15s (28.2 MB/s) 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 93s Preparing to unpack .../gcc-14-base_14.2.0-13ubuntu1_amd64.deb ... 93s Unpacking gcc-14-base:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 93s Setting up gcc-14-base:amd64 (14.2.0-13ubuntu1) ... 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 93s Preparing to unpack .../libstdc++6_14.2.0-13ubuntu1_amd64.deb ... 93s Unpacking libstdc++6:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 93s Setting up libstdc++6:amd64 (14.2.0-13ubuntu1) ... 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 93s Preparing to unpack .../libatomic1_14.2.0-13ubuntu1_amd64.deb ... 93s Unpacking libatomic1:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 93s Preparing to unpack .../libgcc-s1_14.2.0-13ubuntu1_amd64.deb ... 93s Unpacking libgcc-s1:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 93s Setting up libgcc-s1:amd64 (14.2.0-13ubuntu1) ... 94s Selecting previously unselected package fonts-dejavu-mono. 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 94s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8_all.deb ... 94s Unpacking fonts-dejavu-mono (2.37-8) ... 94s Selecting previously unselected package fonts-dejavu-core. 94s Preparing to unpack .../001-fonts-dejavu-core_2.37-8_all.deb ... 94s Unpacking fonts-dejavu-core (2.37-8) ... 94s Selecting previously unselected package fontconfig-config. 94s Preparing to unpack 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Selecting previously unselected package r-bioc-s4vectors. 103s Preparing to unpack .../093-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 103s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 103s Selecting previously unselected package r-bioc-biocio. 103s Preparing to unpack .../094-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 103s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 103s Selecting previously unselected package r-cran-formatr. 103s Preparing to unpack .../095-r-cran-formatr_1.14-2_all.deb ... 103s Unpacking r-cran-formatr (1.14-2) ... 103s Selecting previously unselected package r-cran-lambda.r. 103s Preparing to unpack .../096-r-cran-lambda.r_1.2.4-2build1_all.deb ... 103s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 103s Selecting previously unselected package r-cran-futile.options. 103s Preparing to unpack .../097-r-cran-futile.options_1.0.1-3build1_all.deb ... 103s Unpacking r-cran-futile.options (1.0.1-3build1) ... 103s Selecting previously unselected package r-cran-futile.logger. 103s Preparing to unpack .../098-r-cran-futile.logger_1.4.3-4build1_all.deb ... 103s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 103s Selecting previously unselected package r-cran-snow. 103s Preparing to unpack .../099-r-cran-snow_1%3a0.4.4-2_all.deb ... 103s Unpacking r-cran-snow (1:0.4.4-2) ... 103s Selecting previously unselected package r-cran-codetools. 103s Preparing to unpack .../100-r-cran-codetools_0.2-20-1_all.deb ... 103s Unpacking r-cran-codetools (0.2-20-1) ... 103s Selecting previously unselected package r-cran-bh. 103s Preparing to unpack .../101-r-cran-bh_1.84.0-1_all.deb ... 103s Unpacking r-cran-bh (1.84.0-1) ... 103s Selecting previously unselected package r-cran-cpp11. 103s Preparing to unpack .../102-r-cran-cpp11_0.5.0-1_all.deb ... 103s Unpacking r-cran-cpp11 (0.5.0-1) ... 103s Selecting previously unselected package r-bioc-biocparallel. 103s Preparing to unpack .../103-r-bioc-biocparallel_1.40.0-2_amd64.deb ... 103s Unpacking r-bioc-biocparallel (1.40.0-2) ... 103s Selecting previously unselected package r-bioc-graph. 104s Preparing to unpack .../104-r-bioc-graph_1.84.1-1_amd64.deb ... 104s Unpacking r-bioc-graph (1.84.1-1) ... 104s Selecting previously unselected package r-bioc-rbgl. 104s Preparing to unpack .../105-r-bioc-rbgl_1.82.0+dfsg-2_amd64.deb ... 104s Unpacking r-bioc-rbgl (1.82.0+dfsg-2) ... 104s Selecting previously unselected package r-cran-xml. 104s Preparing to unpack .../106-r-cran-xml_3.99-0.18-1_amd64.deb ... 104s Unpacking r-cran-xml (3.99-0.18-1) ... 104s Selecting previously unselected package r-cran-bitops. 104s Preparing to unpack .../107-r-cran-bitops_1.0-8-1_amd64.deb ... 104s Unpacking r-cran-bitops (1.0-8-1) ... 104s Selecting previously unselected package r-cran-rcurl. 104s Preparing to unpack .../108-r-cran-rcurl_1.98-1.16+dfsg-1_amd64.deb ... 104s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 104s Selecting previously unselected package r-cran-runit. 104s Preparing to unpack .../109-r-cran-runit_0.4.33-1_all.deb ... 104s Unpacking r-cran-runit (0.4.33-1) ... 104s Selecting previously unselected package r-cran-biocmanager. 104s Preparing to unpack .../110-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 104s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 104s Selecting previously unselected package r-bioc-biocviews. 104s Preparing to unpack .../111-r-bioc-biocviews_1.74.0-2_all.deb ... 104s Unpacking r-bioc-biocviews (1.74.0-2) ... 104s Selecting previously unselected package r-bioc-iranges. 104s Preparing to unpack .../112-r-bioc-iranges_2.40.1-2_amd64.deb ... 104s Unpacking r-bioc-iranges (2.40.1-2) ... 104s Selecting previously unselected package zlib1g-dev:amd64. 104s Preparing to unpack .../113-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 104s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 104s Selecting previously unselected package r-bioc-zlibbioc. 104s Preparing to unpack .../114-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 104s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 104s Selecting previously unselected package r-bioc-xvector. 104s Preparing to unpack .../115-r-bioc-xvector_0.46.0-2_amd64.deb ... 104s Unpacking r-bioc-xvector (0.46.0-2) ... 104s Selecting previously unselected package r-cran-curl. 104s Preparing to unpack .../116-r-cran-curl_5.2.3+dfsg-1ubuntu1_amd64.deb ... 104s Unpacking r-cran-curl (5.2.3+dfsg-1ubuntu1) ... 104s Selecting previously unselected package r-cran-jsonlite. 104s Preparing to unpack .../117-r-cran-jsonlite_1.8.9+dfsg-1_amd64.deb ... 104s Unpacking r-cran-jsonlite (1.8.9+dfsg-1) ... 104s Selecting previously unselected package r-cran-mime. 104s Preparing to unpack .../118-r-cran-mime_0.12-2_amd64.deb ... 104s Unpacking r-cran-mime (0.12-2) ... 104s Selecting previously unselected package r-cran-sys. 104s Preparing to unpack .../119-r-cran-sys_3.4.3-1_amd64.deb ... 104s Unpacking r-cran-sys (3.4.3-1) ... 104s Selecting previously unselected package r-cran-askpass. 104s Preparing to unpack .../120-r-cran-askpass_1.2.1-1_amd64.deb ... 104s Unpacking r-cran-askpass (1.2.1-1) ... 104s Selecting previously unselected package r-cran-openssl. 104s Preparing to unpack .../121-r-cran-openssl_2.2.0+dfsg-1_amd64.deb ... 104s Unpacking r-cran-openssl (2.2.0+dfsg-1) ... 104s Selecting previously unselected package r-cran-r6. 104s Preparing to unpack .../122-r-cran-r6_2.5.1-1_all.deb ... 104s Unpacking r-cran-r6 (2.5.1-1) ... 105s Selecting previously unselected package r-cran-httr. 105s Preparing to unpack .../123-r-cran-httr_1.4.7+dfsg-1_all.deb ... 105s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 105s Selecting previously unselected package r-bioc-ucsc.utils. 105s Preparing to unpack .../124-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 105s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 105s Selecting previously unselected package r-bioc-genomeinfodbdata. 105s Preparing to unpack .../125-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 105s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 105s Selecting previously unselected package r-bioc-genomeinfodb. 105s Preparing to unpack .../126-r-bioc-genomeinfodb_1.42.1+dfsg-2_all.deb ... 105s Unpacking r-bioc-genomeinfodb (1.42.1+dfsg-2) ... 105s Selecting previously unselected package r-cran-crayon. 105s Preparing to unpack .../127-r-cran-crayon_1.5.2-1_all.deb ... 105s Unpacking r-cran-crayon (1.5.2-1) ... 105s Selecting previously unselected package r-bioc-biostrings. 105s Preparing to unpack .../128-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 105s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 105s Selecting previously unselected package r-cran-lattice. 105s Preparing to unpack .../129-r-cran-lattice_0.22-6-1_amd64.deb ... 105s Unpacking r-cran-lattice (0.22-6-1) ... 105s Selecting previously unselected package r-cran-matrix. 105s Preparing to unpack .../130-r-cran-matrix_1.7-1-1_amd64.deb ... 105s Unpacking r-cran-matrix (1.7-1-1) ... 105s Selecting previously unselected package r-cran-matrixstats. 105s Preparing to unpack .../131-r-cran-matrixstats_1.4.1-1_amd64.deb ... 105s Unpacking r-cran-matrixstats (1.4.1-1) ... 105s Selecting previously unselected package r-bioc-matrixgenerics. 105s Preparing to unpack .../132-r-bioc-matrixgenerics_1.18.0-2_all.deb ... 105s Unpacking r-bioc-matrixgenerics (1.18.0-2) ... 105s Selecting previously unselected package r-cran-abind. 105s Preparing to unpack .../133-r-cran-abind_1.4-8-1_all.deb ... 105s Unpacking r-cran-abind (1.4-8-1) ... 105s Selecting previously unselected package r-bioc-s4arrays. 105s Preparing to unpack .../134-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ... 105s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 105s Selecting previously unselected package r-bioc-sparsearray. 105s Preparing to unpack .../135-r-bioc-sparsearray_1.6.0+dfsg-2_amd64.deb ... 105s Unpacking r-bioc-sparsearray (1.6.0+dfsg-2) ... 105s Selecting previously unselected package r-bioc-delayedarray. 105s Preparing to unpack .../136-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ... 105s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 106s Selecting previously unselected package r-bioc-genomicranges. 106s Preparing to unpack .../137-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ... 106s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 106s Selecting previously unselected package r-bioc-summarizedexperiment. 106s Preparing to unpack .../138-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 106s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 106s Selecting previously unselected package r-cran-locfit. 106s Preparing to unpack .../139-r-cran-locfit_1.5-9.10-1_amd64.deb ... 106s Unpacking r-cran-locfit (1.5-9.10-1) ... 106s Selecting previously unselected package r-cran-cli. 106s Preparing to unpack .../140-r-cran-cli_3.6.3-1_amd64.deb ... 106s Unpacking r-cran-cli (3.6.3-1) ... 106s Selecting previously unselected package r-cran-glue. 106s Preparing to unpack .../141-r-cran-glue_1.8.0-1_amd64.deb ... 106s Unpacking r-cran-glue (1.8.0-1) ... 106s Selecting previously unselected package r-cran-rlang. 106s Preparing to unpack .../142-r-cran-rlang_1.1.4-1_amd64.deb ... 106s Unpacking r-cran-rlang (1.1.4-1) ... 106s Selecting previously unselected package r-cran-lifecycle. 106s Preparing to unpack .../143-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 106s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 106s Selecting previously unselected package r-cran-gtable. 106s Preparing to unpack .../144-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 106s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 106s Selecting previously unselected package r-cran-isoband. 106s Preparing to unpack .../145-r-cran-isoband_0.2.7-1_amd64.deb ... 106s Unpacking r-cran-isoband (0.2.7-1) ... 106s Selecting previously unselected package r-cran-mass. 106s Preparing to unpack .../146-r-cran-mass_7.3-64-1_amd64.deb ... 106s Unpacking r-cran-mass (7.3-64-1) ... 106s Selecting previously unselected package r-cran-nlme. 106s Preparing to unpack .../147-r-cran-nlme_3.1.166-1_amd64.deb ... 106s Unpacking r-cran-nlme (3.1.166-1) ... 106s Selecting previously unselected package r-cran-mgcv. 106s Preparing to unpack .../148-r-cran-mgcv_1.9-1-1_amd64.deb ... 106s Unpacking r-cran-mgcv (1.9-1-1) ... 106s Selecting previously unselected package r-cran-farver. 106s Preparing to unpack .../149-r-cran-farver_2.1.2-1_amd64.deb ... 106s Unpacking r-cran-farver (2.1.2-1) ... 106s Selecting previously unselected package r-cran-labeling. 106s Preparing to unpack .../150-r-cran-labeling_0.4.3-1_all.deb ... 106s Unpacking r-cran-labeling (0.4.3-1) ... 106s Selecting previously unselected package r-cran-colorspace. 106s Preparing to unpack .../151-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ... 106s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 107s Selecting previously unselected package r-cran-munsell. 107s Preparing to unpack .../152-r-cran-munsell_0.5.1-1_all.deb ... 107s Unpacking r-cran-munsell (0.5.1-1) ... 107s Selecting previously unselected package r-cran-rcolorbrewer. 107s Preparing to unpack .../153-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 107s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 107s Selecting previously unselected package r-cran-viridislite. 107s Preparing to unpack .../154-r-cran-viridislite_0.4.2-2_all.deb ... 107s Unpacking r-cran-viridislite (0.4.2-2) ... 107s Selecting previously unselected package r-cran-scales. 107s Preparing to unpack .../155-r-cran-scales_1.3.0-1_all.deb ... 107s Unpacking r-cran-scales (1.3.0-1) ... 107s Selecting previously unselected package r-cran-fansi. 107s Preparing to unpack .../156-r-cran-fansi_1.0.5-1_amd64.deb ... 107s Unpacking r-cran-fansi (1.0.5-1) ... 107s Selecting previously unselected package r-cran-magrittr. 107s Preparing to unpack .../157-r-cran-magrittr_2.0.3-1_amd64.deb ... 107s Unpacking r-cran-magrittr (2.0.3-1) ... 107s Selecting previously unselected package r-cran-utf8. 107s Preparing to unpack .../158-r-cran-utf8_1.2.4-1_amd64.deb ... 107s Unpacking r-cran-utf8 (1.2.4-1) ... 107s Selecting previously unselected package r-cran-vctrs. 107s Preparing to unpack .../159-r-cran-vctrs_0.6.5-1_amd64.deb ... 107s Unpacking r-cran-vctrs (0.6.5-1) ... 107s Selecting previously unselected package r-cran-pillar. 107s Preparing to unpack .../160-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 107s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 107s Selecting previously unselected package r-cran-pkgconfig. 107s Preparing to unpack .../161-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 107s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 107s Selecting previously unselected package r-cran-tibble. 107s Preparing to unpack .../162-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 107s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 107s Selecting previously unselected package r-cran-withr. 107s Preparing to unpack .../163-r-cran-withr_3.0.2+dfsg-1_all.deb ... 107s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 107s Selecting previously unselected package r-cran-ggplot2. 107s Preparing to unpack .../164-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 107s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 107s Selecting previously unselected package r-cran-pkgkitten. 107s Preparing to unpack .../165-r-cran-pkgkitten_0.2.4-1_all.deb ... 107s Unpacking r-cran-pkgkitten (0.2.4-1) ... 107s Selecting previously unselected package r-cran-rcpp. 107s Preparing to unpack .../166-r-cran-rcpp_1.0.14-1_amd64.deb ... 107s Unpacking r-cran-rcpp (1.0.14-1) ... 108s Selecting previously unselected package r-cran-rcpparmadillo. 108s Preparing to unpack .../167-r-cran-rcpparmadillo_14.2.2-1-1_amd64.deb ... 108s Unpacking r-cran-rcpparmadillo (14.2.2-1-1) ... 108s Selecting previously unselected package r-bioc-deseq2. 108s Preparing to unpack .../168-r-bioc-deseq2_1.46.0+dfsg-2_amd64.deb ... 108s Unpacking r-bioc-deseq2 (1.46.0+dfsg-2) ... 108s Selecting previously unselected package r-bioc-rhtslib. 108s Preparing to unpack .../169-r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb ... 108s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 108s Selecting previously unselected package r-bioc-rsamtools. 108s Preparing to unpack .../170-r-bioc-rsamtools_2.22.0+dfsg-2_amd64.deb ... 108s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 108s Selecting previously unselected package r-bioc-genomicalignments. 108s Preparing to unpack .../171-r-bioc-genomicalignments_1.42.0-2_amd64.deb ... 108s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 108s Selecting previously unselected package r-bioc-hsmmsinglecell. 108s Preparing to unpack .../172-r-bioc-hsmmsinglecell_1.26.0-2_all.deb ... 108s Unpacking r-bioc-hsmmsinglecell (1.26.0-2) ... 108s Selecting previously unselected package r-cran-statmod. 108s Preparing to unpack .../173-r-cran-statmod_1.5.0-1_amd64.deb ... 108s Unpacking r-cran-statmod (1.5.0-1) ... 108s Selecting previously unselected package r-bioc-limma. 108s Preparing to unpack .../174-r-bioc-limma_3.62.2+dfsg-1_amd64.deb ... 108s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 108s Selecting previously unselected package r-cran-vgam. 108s Preparing to unpack .../175-r-cran-vgam_1.1-11-1_amd64.deb ... 108s Unpacking r-cran-vgam (1.1-11-1) ... 108s Selecting previously unselected package r-cran-irlba. 108s Preparing to unpack .../176-r-cran-irlba_2.3.5.1-4_amd64.deb ... 108s Unpacking r-cran-irlba (2.3.5.1-4) ... 108s Selecting previously unselected package r-cran-rcppeigen. 109s Preparing to unpack .../177-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 109s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 109s Selecting previously unselected package r-cran-ddrtree. 109s Preparing to unpack .../178-r-cran-ddrtree_0.1.5-2_amd64.deb ... 109s Unpacking r-cran-ddrtree (0.1.5-2) ... 109s Selecting previously unselected package r-cran-igraph. 109s Preparing to unpack .../179-r-cran-igraph_2.0.3-1_amd64.deb ... 109s Unpacking r-cran-igraph (2.0.3-1) ... 109s Selecting previously unselected package r-cran-plyr. 109s Preparing to unpack .../180-r-cran-plyr_1.8.9-1_amd64.deb ... 109s Unpacking r-cran-plyr (1.8.9-1) ... 109s Selecting previously unselected package r-cran-cluster. 109s Preparing to unpack .../181-r-cran-cluster_2.1.8-1_amd64.deb ... 109s Unpacking r-cran-cluster (2.1.8-1) ... 109s Selecting previously unselected package r-cran-combinat. 109s Preparing to unpack .../182-r-cran-combinat_0.0-8-7build1_all.deb ... 109s Unpacking r-cran-combinat (0.0-8-7build1) ... 109s Selecting previously unselected package r-cran-fastica. 109s Preparing to unpack .../183-r-cran-fastica_1.2-7-1_amd64.deb ... 109s Unpacking r-cran-fastica (1.2-7-1) ... 109s Selecting previously unselected package r-cran-rtsne. 109s Preparing to unpack .../184-r-cran-rtsne_0.17-1_amd64.deb ... 109s Unpacking r-cran-rtsne (0.17-1) ... 109s Selecting previously unselected package r-cran-stringi. 109s Preparing to unpack .../185-r-cran-stringi_1.8.4-1build1_amd64.deb ... 109s Unpacking r-cran-stringi (1.8.4-1build1) ... 109s Selecting previously unselected package r-cran-stringr. 109s Preparing to unpack .../186-r-cran-stringr_1.5.1-1_all.deb ... 109s Unpacking r-cran-stringr (1.5.1-1) ... 109s Selecting previously unselected package r-cran-reshape2. 109s Preparing to unpack .../187-r-cran-reshape2_1.4.4-2build1_amd64.deb ... 109s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 109s Selecting previously unselected package r-cran-leidenbase. 109s Preparing to unpack .../188-r-cran-leidenbase_0.1.27-1_amd64.deb ... 109s Unpacking r-cran-leidenbase (0.1.27-1) ... 109s Selecting previously unselected package r-cran-generics. 109s Preparing to unpack .../189-r-cran-generics_0.1.3-1_all.deb ... 109s Unpacking r-cran-generics (0.1.3-1) ... 109s Selecting previously unselected package r-cran-tidyselect. 109s Preparing to unpack .../190-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 109s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 109s Selecting previously unselected package r-cran-dplyr. 109s Preparing to unpack .../191-r-cran-dplyr_1.1.4-4_amd64.deb ... 109s Unpacking r-cran-dplyr (1.1.4-4) ... 109s Selecting previously unselected package r-cran-pheatmap. 110s Preparing to unpack .../192-r-cran-pheatmap_1.0.12-2build1_all.deb ... 110s Unpacking r-cran-pheatmap (1.0.12-2build1) ... 110s Selecting previously unselected package r-cran-proxy. 110s Preparing to unpack .../193-r-cran-proxy_0.4-27-1_amd64.deb ... 110s Unpacking r-cran-proxy (0.4-27-1) ... 110s Selecting previously unselected package r-cran-slam. 110s Preparing to unpack .../194-r-cran-slam_0.1-55-1_amd64.deb ... 110s Unpacking r-cran-slam (0.1-55-1) ... 110s Selecting previously unselected package r-cran-gridextra. 110s Preparing to unpack .../195-r-cran-gridextra_2.3-3build1_all.deb ... 110s Unpacking r-cran-gridextra (2.3-3build1) ... 110s Selecting previously unselected package r-cran-viridis. 110s Preparing to unpack .../196-r-cran-viridis_0.6.5-1_all.deb ... 110s Unpacking r-cran-viridis (0.6.5-1) ... 110s Selecting previously unselected package r-cran-rann. 110s Preparing to unpack .../197-r-cran-rann_2.6.2-1_amd64.deb ... 110s Unpacking r-cran-rann (2.6.2-1) ... 110s Selecting previously unselected package r-bioc-monocle. 110s Preparing to unpack .../198-r-bioc-monocle_2.34.0-2_amd64.deb ... 110s Unpacking r-bioc-monocle (2.34.0-2) ... 110s Selecting previously unselected package r-cran-survival. 110s Preparing to unpack .../199-r-cran-survival_3.8-3-1_amd64.deb ... 110s Unpacking r-cran-survival (3.8-3-1) ... 110s Selecting previously unselected package r-bioc-multtest. 110s Preparing to unpack .../200-r-bioc-multtest_2.62.0-2_amd64.deb ... 110s Unpacking r-bioc-multtest (2.62.0-2) ... 110s Selecting previously unselected package r-cran-rjson. 110s Preparing to unpack .../201-r-cran-rjson_0.2.23-1_amd64.deb ... 110s Unpacking r-cran-rjson (0.2.23-1) ... 110s Selecting previously unselected package r-cran-yaml. 110s Preparing to unpack .../202-r-cran-yaml_2.3.10-1_amd64.deb ... 110s Unpacking r-cran-yaml (2.3.10-1) ... 110s Selecting previously unselected package r-cran-restfulr. 110s Preparing to unpack .../203-r-cran-restfulr_0.0.15-1_amd64.deb ... 110s Unpacking r-cran-restfulr (0.0.15-1) ... 110s Selecting previously unselected package r-bioc-rtracklayer. 110s Preparing to unpack .../204-r-bioc-rtracklayer_1.66.0-2_amd64.deb ... 110s Unpacking r-bioc-rtracklayer (1.66.0-2) ... 110s Selecting previously unselected package r-bioc-singlecellexperiment. 110s Preparing to unpack .../205-r-bioc-singlecellexperiment_1.28.1+ds-2_all.deb ... 110s Unpacking r-bioc-singlecellexperiment (1.28.1+ds-2) ... 110s Selecting previously unselected package r-cran-digest. 110s Preparing to unpack .../206-r-cran-digest_0.6.37-1_amd64.deb ... 110s Unpacking r-cran-digest (0.6.37-1) ... 110s Selecting previously unselected package r-cran-ape. 110s Preparing to unpack .../207-r-cran-ape_5.8-1_amd64.deb ... 110s Unpacking r-cran-ape (5.8-1) ... 110s Selecting previously unselected package r-cran-base64enc. 110s Preparing to unpack .../208-r-cran-base64enc_0.1-3-3_amd64.deb ... 110s Unpacking r-cran-base64enc (0.1-3-3) ... 111s Selecting previously unselected package r-cran-beeswarm. 111s Preparing to unpack .../209-r-cran-beeswarm_0.4.0-1_amd64.deb ... 111s Unpacking r-cran-beeswarm (0.4.0-1) ... 111s Selecting previously unselected package r-cran-bit. 111s Preparing to unpack .../210-r-cran-bit_4.0.5-1_amd64.deb ... 111s Unpacking r-cran-bit (4.0.5-1) ... 111s Selecting previously unselected package r-cran-bit64. 111s Preparing to unpack .../211-r-cran-bit64_4.0.5-1_amd64.deb ... 111s Unpacking r-cran-bit64 (4.0.5-1) ... 111s Selecting previously unselected package r-cran-brio. 111s Preparing to unpack .../212-r-cran-brio_1.1.5-1_amd64.deb ... 111s Unpacking r-cran-brio (1.1.5-1) ... 111s Selecting previously unselected package r-cran-fastmap. 111s Preparing to unpack .../213-r-cran-fastmap_1.2.0-1_amd64.deb ... 111s Unpacking r-cran-fastmap (1.2.0-1) ... 111s Selecting previously unselected package r-cran-cachem. 111s Preparing to unpack .../214-r-cran-cachem_1.1.0-1_amd64.deb ... 111s Unpacking r-cran-cachem (1.1.0-1) ... 111s Selecting previously unselected package r-cran-htmltools. 111s Preparing to unpack .../215-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 111s Unpacking r-cran-htmltools (0.5.8.1-1) ... 111s Selecting previously unselected package r-cran-jquerylib. 111s Preparing to unpack .../216-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 111s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 111s Selecting previously unselected package r-cran-memoise. 111s Preparing to unpack .../217-r-cran-memoise_2.0.1-1_all.deb ... 111s Unpacking r-cran-memoise (2.0.1-1) ... 111s Selecting previously unselected package r-cran-fs. 111s Preparing to unpack .../218-r-cran-fs_1.6.4+dfsg-1_amd64.deb ... 111s Unpacking r-cran-fs (1.6.4+dfsg-1) ... 111s Selecting previously unselected package r-cran-rappdirs. 111s Preparing to unpack .../219-r-cran-rappdirs_0.3.3-1_amd64.deb ... 111s Unpacking r-cran-rappdirs (0.3.3-1) ... 111s Selecting previously unselected package r-cran-sass. 111s Preparing to unpack .../220-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 111s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 111s Selecting previously unselected package r-cran-bslib. 111s Preparing to unpack .../221-r-cran-bslib_0.7.0+dfsg-1_all.deb ... 111s Unpacking r-cran-bslib (0.7.0+dfsg-1) ... 111s Selecting previously unselected package r-cran-cairo. 111s Preparing to unpack .../222-r-cran-cairo_1.6-2-1_amd64.deb ... 111s Unpacking r-cran-cairo (1.6-2-1) ... 111s Selecting previously unselected package r-cran-ps. 111s Preparing to unpack .../223-r-cran-ps_1.8.0-1_amd64.deb ... 111s Unpacking r-cran-ps (1.8.0-1) ... 111s Selecting previously unselected package r-cran-processx. 111s Preparing to unpack .../224-r-cran-processx_3.8.4-1_amd64.deb ... 111s Unpacking r-cran-processx (3.8.4-1) ... 111s Selecting previously unselected package r-cran-callr. 111s Preparing to unpack .../225-r-cran-callr_3.7.6-1_all.deb ... 111s Unpacking r-cran-callr (3.7.6-1) ... 112s Selecting previously unselected package r-cran-class. 112s Preparing to unpack .../226-r-cran-class_7.3-23-1_amd64.deb ... 112s Unpacking r-cran-class (7.3-23-1) ... 112s Selecting previously unselected package r-cran-e1071. 112s Preparing to unpack .../227-r-cran-e1071_1.7-16-1_amd64.deb ... 112s Unpacking r-cran-e1071 (1.7-16-1) ... 112s Selecting previously unselected package r-cran-iterators. 112s Preparing to unpack .../228-r-cran-iterators_1.0.14-1_all.deb ... 112s Unpacking r-cran-iterators (1.0.14-1) ... 112s Selecting previously unselected package r-cran-foreach. 112s Preparing to unpack .../229-r-cran-foreach_1.5.2-1_all.deb ... 112s Unpacking r-cran-foreach (1.5.2-1) ... 112s Selecting previously unselected package r-cran-data.table. 112s Preparing to unpack .../230-r-cran-data.table_1.16.4+dfsg-1_amd64.deb ... 112s Unpacking r-cran-data.table (1.16.4+dfsg-1) ... 112s Selecting previously unselected package r-cran-modelmetrics. 112s Preparing to unpack .../231-r-cran-modelmetrics_1.2.2.2-1build1_amd64.deb ... 112s Unpacking r-cran-modelmetrics (1.2.2.2-1build1) ... 112s Selecting previously unselected package r-cran-proc. 112s Preparing to unpack .../232-r-cran-proc_1.18.5-1_amd64.deb ... 112s Unpacking r-cran-proc (1.18.5-1) ... 112s Selecting previously unselected package r-cran-tzdb. 112s Preparing to unpack .../233-r-cran-tzdb_0.4.0-2_amd64.deb ... 112s Unpacking r-cran-tzdb (0.4.0-2) ... 112s Selecting previously unselected package r-cran-clock. 112s Preparing to unpack .../234-r-cran-clock_0.7.1-1_amd64.deb ... 112s Unpacking r-cran-clock (0.7.1-1) ... 112s Selecting previously unselected package r-cran-gower. 112s Preparing to unpack .../235-r-cran-gower_1.0.1-1_amd64.deb ... 112s Unpacking r-cran-gower (1.0.1-1) ... 112s Selecting previously unselected package r-cran-hardhat. 112s Preparing to unpack .../236-r-cran-hardhat_1.4.0+dfsg-1_all.deb ... 112s Unpacking r-cran-hardhat (1.4.0+dfsg-1) ... 112s Selecting previously unselected package r-cran-rpart. 112s Preparing to unpack .../237-r-cran-rpart_4.1.24-1_amd64.deb ... 112s Unpacking r-cran-rpart (4.1.24-1) ... 112s Selecting previously unselected package r-cran-nnet. 112s Preparing to unpack .../238-r-cran-nnet_7.3-20-1_amd64.deb ... 112s Unpacking r-cran-nnet (7.3-20-1) ... 112s Selecting previously unselected package r-cran-shape. 112s Preparing to unpack .../239-r-cran-shape_1.4.6.1-1_all.deb ... 112s Unpacking r-cran-shape (1.4.6.1-1) ... 112s Selecting previously unselected package r-cran-diagram. 112s Preparing to unpack .../240-r-cran-diagram_1.6.5-2_all.deb ... 112s Unpacking r-cran-diagram (1.6.5-2) ... 112s Selecting previously unselected package r-cran-kernsmooth. 112s Preparing to unpack .../241-r-cran-kernsmooth_2.23-26-1_amd64.deb ... 112s Unpacking r-cran-kernsmooth (2.23-26-1) ... 112s Selecting previously unselected package r-cran-globals. 113s Preparing to unpack .../242-r-cran-globals_0.16.3-1_all.deb ... 113s Unpacking r-cran-globals (0.16.3-1) ... 113s Selecting previously unselected package r-cran-listenv. 113s Preparing to unpack .../243-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 113s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 113s Selecting previously unselected package r-cran-parallelly. 113s Preparing to unpack .../244-r-cran-parallelly_1.38.0-1_amd64.deb ... 113s Unpacking r-cran-parallelly (1.38.0-1) ... 113s Selecting previously unselected package r-cran-future. 113s Preparing to unpack .../245-r-cran-future_1.34.0+dfsg-1_all.deb ... 113s Unpacking r-cran-future (1.34.0+dfsg-1) ... 113s Selecting previously unselected package r-cran-future.apply. 113s Preparing to unpack .../246-r-cran-future.apply_1.11.2+dfsg-1_all.deb ... 113s Unpacking r-cran-future.apply (1.11.2+dfsg-1) ... 113s Selecting previously unselected package r-cran-numderiv. 113s Preparing to unpack .../247-r-cran-numderiv_2016.8-1.1-3_all.deb ... 113s Unpacking r-cran-numderiv (2016.8-1.1-3) ... 113s Selecting previously unselected package r-cran-progressr. 113s Preparing to unpack .../248-r-cran-progressr_0.14.0-1_all.deb ... 113s Unpacking r-cran-progressr (0.14.0-1) ... 113s Selecting previously unselected package r-cran-squarem. 113s Preparing to unpack .../249-r-cran-squarem_2021.1-1_all.deb ... 113s Unpacking r-cran-squarem (2021.1-1) ... 113s Selecting previously unselected package r-cran-lava. 113s Preparing to unpack .../250-r-cran-lava_1.7.3+dfsg-1_all.deb ... 113s Unpacking r-cran-lava (1.7.3+dfsg-1) ... 113s Selecting previously unselected package r-cran-prodlim. 113s Preparing to unpack .../251-r-cran-prodlim_2024.06.25-1_amd64.deb ... 113s Unpacking r-cran-prodlim (2024.06.25-1) ... 113s Selecting previously unselected package r-cran-ipred. 113s Preparing to unpack .../252-r-cran-ipred_0.9-15-1_amd64.deb ... 113s Unpacking r-cran-ipred (0.9-15-1) ... 113s Selecting previously unselected package r-cran-timechange. 113s Preparing to unpack .../253-r-cran-timechange_0.3.0-1_amd64.deb ... 113s Unpacking r-cran-timechange (0.3.0-1) ... 113s Selecting previously unselected package r-cran-lubridate. 113s Preparing to unpack .../254-r-cran-lubridate_1.9.3+dfsg-1_amd64.deb ... 113s Unpacking r-cran-lubridate (1.9.3+dfsg-1) ... 113s Selecting previously unselected package r-cran-purrr. 113s Preparing to unpack .../255-r-cran-purrr_1.0.2-1_amd64.deb ... 113s Unpacking r-cran-purrr (1.0.2-1) ... 113s Selecting previously unselected package r-cran-tidyr. 113s Preparing to unpack .../256-r-cran-tidyr_1.3.1-1_amd64.deb ... 113s Unpacking r-cran-tidyr (1.3.1-1) ... 113s Selecting previously unselected package r-cran-timedate. 113s Preparing to unpack .../257-r-cran-timedate_4041.110-1_amd64.deb ... 113s Unpacking r-cran-timedate (4041.110-1) ... 113s Selecting previously unselected package r-cran-recipes. 113s Preparing to unpack .../258-r-cran-recipes_1.1.0+dfsg-1_all.deb ... 113s Unpacking r-cran-recipes (1.1.0+dfsg-1) ... 113s Selecting previously unselected package r-cran-caret. 114s Preparing to unpack .../259-r-cran-caret_6.0-94+dfsg-1_amd64.deb ... 114s Unpacking r-cran-caret (6.0-94+dfsg-1) ... 114s Selecting previously unselected package r-cran-catools. 114s Preparing to unpack .../260-r-cran-catools_1.18.2-1_amd64.deb ... 114s Unpacking r-cran-catools (1.18.2-1) ... 114s Selecting previously unselected package r-cran-evaluate. 114s Preparing to unpack .../261-r-cran-evaluate_1.0.0-1_all.deb ... 114s Unpacking r-cran-evaluate (1.0.0-1) ... 114s Selecting previously unselected package r-cran-xfun. 114s Preparing to unpack .../262-r-cran-xfun_0.49+dfsg-1_amd64.deb ... 114s Unpacking r-cran-xfun (0.49+dfsg-1) ... 114s Selecting previously unselected package r-cran-highr. 114s Preparing to unpack .../263-r-cran-highr_0.11+dfsg-1_all.deb ... 114s Unpacking r-cran-highr (0.11+dfsg-1) ... 114s Selecting previously unselected package libjs-mathjax. 114s Preparing to unpack .../264-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 114s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 115s Selecting previously unselected package r-cran-knitr. 115s Preparing to unpack .../265-r-cran-knitr_1.49+dfsg-1_all.deb ... 115s Unpacking r-cran-knitr (1.49+dfsg-1) ... 115s Selecting previously unselected package r-cran-fontawesome. 115s Preparing to unpack .../266-r-cran-fontawesome_0.5.2-1_all.deb ... 115s Unpacking r-cran-fontawesome (0.5.2-1) ... 115s Selecting previously unselected package r-cran-tinytex. 115s Preparing to unpack .../267-r-cran-tinytex_0.53-1_all.deb ... 115s Unpacking r-cran-tinytex (0.53-1) ... 115s Selecting previously unselected package libjs-modernizr. 115s Preparing to unpack .../268-libjs-modernizr_3.13.0-0.1_all.deb ... 115s Unpacking libjs-modernizr (3.13.0-0.1) ... 115s Selecting previously unselected package r-cran-later. 115s Preparing to unpack .../269-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 115s Unpacking r-cran-later (1.3.2+dfsg-1) ... 115s Selecting previously unselected package r-cran-promises. 115s Preparing to unpack .../270-r-cran-promises_1.3.0+dfsg-1_amd64.deb ... 115s Unpacking r-cran-promises (1.3.0+dfsg-1) ... 115s Selecting previously unselected package r-cran-httpuv. 115s Preparing to unpack .../271-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 115s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 115s Selecting previously unselected package r-cran-xtable. 115s Preparing to unpack .../272-r-cran-xtable_1%3a1.8-4-2_all.deb ... 115s Unpacking r-cran-xtable (1:1.8-4-2) ... 115s Selecting previously unselected package r-cran-sourcetools. 115s Preparing to unpack .../273-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 115s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 115s Selecting previously unselected package r-cran-commonmark. 115s Preparing to unpack .../274-r-cran-commonmark_1.9.2-2_amd64.deb ... 115s Unpacking r-cran-commonmark (1.9.2-2) ... 115s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 115s Preparing to unpack .../275-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 115s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 115s Selecting previously unselected package r-cran-shiny. 115s Preparing to unpack .../276-r-cran-shiny_1.9.1+dfsg-1_all.deb ... 115s Unpacking r-cran-shiny (1.9.1+dfsg-1) ... 115s Selecting previously unselected package r-cran-rmarkdown. 116s Preparing to unpack .../277-r-cran-rmarkdown_2.28+dfsg-1_all.deb ... 116s Unpacking r-cran-rmarkdown (2.28+dfsg-1) ... 116s Selecting previously unselected package r-cran-htmlwidgets. 116s Preparing to unpack .../278-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 116s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 116s Selecting previously unselected package r-cran-miniui. 116s Preparing to unpack .../279-r-cran-miniui_0.1.1.1-3build1_all.deb ... 116s Unpacking r-cran-miniui (0.1.1.1-3build1) ... 116s Selecting previously unselected package r-cran-shinyjs. 116s Preparing to unpack .../280-r-cran-shinyjs_2.1.0-1_all.deb ... 116s Unpacking r-cran-shinyjs (2.1.0-1) ... 116s Selecting previously unselected package r-cran-colourpicker. 116s Preparing to unpack .../281-r-cran-colourpicker_1.3.0+dfsg-1_all.deb ... 116s Unpacking r-cran-colourpicker (1.3.0+dfsg-1) ... 116s Selecting previously unselected package r-cran-conquer. 116s Preparing to unpack .../282-r-cran-conquer_1.3.3-1_amd64.deb ... 116s Unpacking r-cran-conquer (1.3.3-1) ... 116s Selecting previously unselected package r-cran-cowplot. 116s Preparing to unpack .../283-r-cran-cowplot_1.1.3+dfsg-1_all.deb ... 116s Unpacking r-cran-cowplot (1.1.3+dfsg-1) ... 116s Selecting previously unselected package r-cran-lazyeval. 116s Preparing to unpack .../284-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 116s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 116s Selecting previously unselected package r-cran-crosstalk. 116s Preparing to unpack .../285-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 116s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 116s Selecting previously unselected package r-cran-deldir. 116s Preparing to unpack .../286-r-cran-deldir_2.0-4-1build1_amd64.deb ... 116s Unpacking r-cran-deldir (2.0-4-1build1) ... 116s Selecting previously unselected package r-cran-deoptimr. 116s Preparing to unpack .../287-r-cran-deoptimr_1.1-3-1-1_all.deb ... 116s Unpacking r-cran-deoptimr (1.1-3-1-1) ... 116s Selecting previously unselected package r-cran-desc. 116s Preparing to unpack .../288-r-cran-desc_1.4.3-1_all.deb ... 116s Unpacking r-cran-desc (1.4.3-1) ... 117s Selecting previously unselected package r-cran-diffobj. 117s Preparing to unpack .../289-r-cran-diffobj_0.3.5-1_amd64.deb ... 117s Unpacking r-cran-diffobj (0.3.5-1) ... 117s Selecting previously unselected package r-cran-dotcall64. 117s Preparing to unpack .../290-r-cran-dotcall64_1.1-1-1_amd64.deb ... 117s Unpacking r-cran-dotcall64 (1.1-1-1) ... 117s Selecting previously unselected package r-cran-sitmo. 117s Preparing to unpack .../291-r-cran-sitmo_2.0.2-1_amd64.deb ... 117s Unpacking r-cran-sitmo (2.0.2-1) ... 117s Selecting previously unselected package r-cran-dqrng. 117s Preparing to unpack .../292-r-cran-dqrng_0.3.2+dfsg-1_amd64.deb ... 117s Unpacking r-cran-dqrng (0.3.2+dfsg-1) ... 117s Selecting previously unselected package r-cran-fastdummies. 117s Preparing to unpack .../293-r-cran-fastdummies_1.7.4-1_all.deb ... 117s Unpacking r-cran-fastdummies (1.7.4-1) ... 117s Selecting previously unselected package r-cran-fitdistrplus. 117s Preparing to unpack .../294-r-cran-fitdistrplus_1.2-1-1_all.deb ... 117s Unpacking r-cran-fitdistrplus (1.2-1-1) ... 117s Selecting previously unselected package r-cran-fnn. 117s Preparing to unpack .../295-r-cran-fnn_1.1.4.1-1_amd64.deb ... 117s Unpacking r-cran-fnn (1.1.4.1-1) ... 117s Selecting previously unselected package r-cran-gtools. 117s Preparing to unpack .../296-r-cran-gtools_3.9.5-1_amd64.deb ... 117s Unpacking r-cran-gtools (3.9.5-1) ... 117s Selecting previously unselected package r-cran-gdata. 117s Preparing to unpack .../297-r-cran-gdata_3.0.1-1_all.deb ... 117s Unpacking r-cran-gdata (3.0.1-1) ... 117s Selecting previously unselected package r-cran-vipor. 117s Preparing to unpack .../298-r-cran-vipor_0.4.7-1_all.deb ... 117s Unpacking r-cran-vipor (0.4.7-1) ... 117s Selecting previously unselected package r-cran-ggbeeswarm. 117s Preparing to unpack .../299-r-cran-ggbeeswarm_0.7.2-1_all.deb ... 117s Unpacking r-cran-ggbeeswarm (0.7.2-1) ... 117s Selecting previously unselected package r-cran-png. 117s Preparing to unpack .../300-r-cran-png_0.1-8-1build2_amd64.deb ... 117s Unpacking r-cran-png (0.1-8-1build2) ... 117s Selecting previously unselected package r-cran-systemfonts. 117s Preparing to unpack .../301-r-cran-systemfonts_1.1.0-1_amd64.deb ... 117s Unpacking r-cran-systemfonts (1.1.0-1) ... 117s Selecting previously unselected package r-cran-textshaping. 117s Preparing to unpack .../302-r-cran-textshaping_0.3.7-2_amd64.deb ... 117s Unpacking r-cran-textshaping (0.3.7-2) ... 117s Selecting previously unselected package r-cran-ragg. 117s Preparing to unpack .../303-r-cran-ragg_1.3.3-1_amd64.deb ... 117s Unpacking r-cran-ragg (1.3.3-1) ... 117s Selecting previously unselected package r-cran-ggrastr. 117s Preparing to unpack .../304-r-cran-ggrastr_1.0.2-1_all.deb ... 117s Unpacking r-cran-ggrastr (1.0.2-1) ... 117s Selecting previously unselected package r-cran-ggrepel. 117s Preparing to unpack .../305-r-cran-ggrepel_0.9.5-2_amd64.deb ... 117s Unpacking r-cran-ggrepel (0.9.5-2) ... 117s Selecting previously unselected package r-cran-ggridges. 117s Preparing to unpack .../306-r-cran-ggridges_0.5.6-1_all.deb ... 117s Unpacking r-cran-ggridges (0.5.6-1) ... 117s Selecting previously unselected package r-cran-goftest. 117s Preparing to unpack .../307-r-cran-goftest_1.2-3-1_amd64.deb ... 117s Unpacking r-cran-goftest (1.2-3-1) ... 117s Selecting previously unselected package r-cran-gplots. 117s Preparing to unpack .../308-r-cran-gplots_3.2.0-1_all.deb ... 117s Unpacking r-cran-gplots (3.2.0-1) ... 118s Selecting previously unselected package r-cran-hdf5r. 118s Preparing to unpack .../309-r-cran-hdf5r_1.3.11+dfsg-1_amd64.deb ... 118s Unpacking r-cran-hdf5r (1.3.11+dfsg-1) ... 118s Selecting previously unselected package r-cran-rprojroot. 118s Preparing to unpack .../310-r-cran-rprojroot_2.0.4-1_all.deb ... 118s Unpacking r-cran-rprojroot (2.0.4-1) ... 118s Selecting previously unselected package r-cran-here. 118s Preparing to unpack .../311-r-cran-here_1.0.1-2_all.deb ... 118s Unpacking r-cran-here (1.0.1-2) ... 118s Selecting previously unselected package r-cran-ica. 118s Preparing to unpack .../312-r-cran-ica_1.0-3-1_all.deb ... 118s Unpacking r-cran-ica (1.0-3-1) ... 118s Selecting previously unselected package r-cran-kernlab. 118s Preparing to unpack .../313-r-cran-kernlab_0.9-33-1_amd64.deb ... 118s Unpacking r-cran-kernlab (0.9-33-1) ... 118s Selecting previously unselected package r-cran-rcpptoml. 118s Preparing to unpack .../314-r-cran-rcpptoml_0.2.2+dfsg-1_amd64.deb ... 118s Unpacking r-cran-rcpptoml (0.2.2+dfsg-1) ... 118s Selecting previously unselected package r-cran-reticulate. 118s Preparing to unpack .../315-r-cran-reticulate_1.39.0+dfsg-1_amd64.deb ... 118s Unpacking r-cran-reticulate (1.39.0+dfsg-1) ... 118s Selecting previously unselected package r-cran-leiden. 118s Preparing to unpack .../316-r-cran-leiden_0.4.3.1+dfsg-1_all.deb ... 118s Unpacking r-cran-leiden (0.4.3.1+dfsg-1) ... 118s Selecting previously unselected package r-cran-zoo. 118s Preparing to unpack .../317-r-cran-zoo_1.8-12-2_amd64.deb ... 118s Unpacking r-cran-zoo (1.8-12-2) ... 118s Selecting previously unselected package r-cran-lmtest. 118s Preparing to unpack .../318-r-cran-lmtest_0.9.40-1_amd64.deb ... 118s Unpacking r-cran-lmtest (0.9.40-1) ... 118s Selecting previously unselected package r-cran-mathjaxr. 118s Preparing to unpack .../319-r-cran-mathjaxr_1.6-0-1_all.deb ... 118s Unpacking r-cran-mathjaxr (1.6-0-1) ... 118s Selecting previously unselected package r-cran-matrixmodels. 118s Preparing to unpack .../320-r-cran-matrixmodels_0.5-3-1_all.deb ... 118s Unpacking r-cran-matrixmodels (0.5-3-1) ... 118s Selecting previously unselected package r-cran-rbibutils. 118s Preparing to unpack .../321-r-cran-rbibutils_2.3-1_amd64.deb ... 118s Unpacking r-cran-rbibutils (2.3-1) ... 118s Selecting previously unselected package r-cran-rdpack. 118s Preparing to unpack .../322-r-cran-rdpack_2.6.2-1_all.deb ... 118s Unpacking r-cran-rdpack (2.6.2-1) ... 118s Selecting previously unselected package r-cran-mnormt. 118s Preparing to unpack .../323-r-cran-mnormt_2.1.1-2_amd64.deb ... 118s Unpacking r-cran-mnormt (2.1.1-2) ... 118s Selecting previously unselected package r-cran-sparsem. 118s Preparing to unpack .../324-r-cran-sparsem_1.84-2-1_amd64.deb ... 118s Unpacking r-cran-sparsem (1.84-2-1) ... 119s Selecting previously unselected package r-cran-quantreg. 119s Preparing to unpack .../325-r-cran-quantreg_5.99.1-1_amd64.deb ... 119s Unpacking r-cran-quantreg (5.99.1-1) ... 119s Selecting previously unselected package r-cran-sn. 119s Preparing to unpack .../326-r-cran-sn_2.1.1-2_all.deb ... 119s Unpacking r-cran-sn (2.1.1-2) ... 119s Selecting previously unselected package r-cran-mvtnorm. 119s Preparing to unpack .../327-r-cran-mvtnorm_1.3-3-1_amd64.deb ... 119s Unpacking r-cran-mvtnorm (1.3-3-1) ... 119s Selecting previously unselected package r-cran-tfisher. 119s Preparing to unpack .../328-r-cran-tfisher_0.2.0-3_all.deb ... 119s Unpacking r-cran-tfisher (0.2.0-3) ... 119s Selecting previously unselected package r-cran-plotrix. 119s Preparing to unpack .../329-r-cran-plotrix_3.8-4-1_all.deb ... 119s Unpacking r-cran-plotrix (3.8-4-1) ... 119s Selecting previously unselected package r-cran-th.data. 119s Preparing to unpack .../330-r-cran-th.data_1.1-2-2_all.deb ... 119s Unpacking r-cran-th.data (1.1-2-2) ... 119s Selecting previously unselected package r-cran-sandwich. 119s Preparing to unpack .../331-r-cran-sandwich_3.1-1-1_all.deb ... 119s Unpacking r-cran-sandwich (3.1-1-1) ... 119s Selecting previously unselected package r-cran-multcomp. 119s Preparing to unpack .../332-r-cran-multcomp_1.4-26-2_all.deb ... 119s Unpacking r-cran-multcomp (1.4-26-2) ... 119s Selecting previously unselected package r-cran-mutoss. 119s Preparing to unpack .../333-r-cran-mutoss_0.1-13-1_all.deb ... 119s Unpacking r-cran-mutoss (0.1-13-1) ... 119s Selecting previously unselected package r-cran-robustbase. 119s Preparing to unpack .../334-r-cran-robustbase_0.99-4-1-1_amd64.deb ... 119s Unpacking r-cran-robustbase (0.99-4-1-1) ... 119s Selecting previously unselected package r-cran-qqconf. 119s Preparing to unpack .../335-r-cran-qqconf_1.3.2+dfsg-1_amd64.deb ... 119s Unpacking r-cran-qqconf (1.3.2+dfsg-1) ... 119s Selecting previously unselected package r-cran-metap. 119s Preparing to unpack .../336-r-cran-metap_1.11-1_all.deb ... 119s Unpacking r-cran-metap (1.11-1) ... 119s Selecting previously unselected package r-cran-plotly. 119s Preparing to unpack .../337-r-cran-plotly_4.10.4+dfsg-2_all.deb ... 119s Unpacking r-cran-plotly (4.10.4+dfsg-2) ... 120s Selecting previously unselected package r-cran-segmented. 120s Preparing to unpack .../338-r-cran-segmented_2.1-3-1_all.deb ... 120s Unpacking r-cran-segmented (2.1-3-1) ... 120s Selecting previously unselected package r-cran-mixtools. 120s Preparing to unpack .../339-r-cran-mixtools_2.0.0-1_amd64.deb ... 120s Unpacking r-cran-mixtools (2.0.0-1) ... 120s Selecting previously unselected package r-cran-patchwork. 120s Preparing to unpack .../340-r-cran-patchwork_1.3.0-1_all.deb ... 120s Unpacking r-cran-patchwork (1.3.0-1) ... 120s Selecting previously unselected package r-cran-pbapply. 120s Preparing to unpack .../341-r-cran-pbapply_1.7-2-1_all.deb ... 120s Unpacking r-cran-pbapply (1.7-2-1) ... 120s Selecting previously unselected package r-cran-pkgbuild. 120s Preparing to unpack .../342-r-cran-pkgbuild_1.4.4-1_all.deb ... 120s Unpacking r-cran-pkgbuild (1.4.4-1) ... 120s Selecting previously unselected package r-cran-pkgload. 120s Preparing to unpack .../343-r-cran-pkgload_1.4.0-1_all.deb ... 120s Unpacking r-cran-pkgload (1.4.0-1) ... 120s Selecting previously unselected package r-cran-polyclip. 120s Preparing to unpack .../344-r-cran-polyclip_1.10-7-1_amd64.deb ... 120s Unpacking r-cran-polyclip (1.10-7-1) ... 120s Selecting previously unselected package r-cran-praise. 120s Preparing to unpack .../345-r-cran-praise_1.0.0-4build1_all.deb ... 120s Unpacking r-cran-praise (1.0.0-4build1) ... 120s Selecting previously unselected package r-cran-r.methodss3. 120s Preparing to unpack .../346-r-cran-r.methodss3_1.8.2-1_all.deb ... 120s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 120s Selecting previously unselected package r-cran-r.oo. 120s Preparing to unpack .../347-r-cran-r.oo_1.26.0-1_all.deb ... 120s Unpacking r-cran-r.oo (1.26.0-1) ... 120s Selecting previously unselected package r-cran-r.utils. 120s Preparing to unpack .../348-r-cran-r.utils_2.12.3-1_all.deb ... 120s Unpacking r-cran-r.utils (2.12.3-1) ... 120s Selecting previously unselected package r-cran-rcppannoy. 120s Preparing to unpack .../349-r-cran-rcppannoy_0.0.22-1_amd64.deb ... 120s Unpacking r-cran-rcppannoy (0.0.22-1) ... 120s Selecting previously unselected package r-cran-rcpphnsw. 120s Preparing to unpack .../350-r-cran-rcpphnsw_0.5.0+ds-1_amd64.deb ... 120s Unpacking r-cran-rcpphnsw (0.5.0+ds-1) ... 120s Selecting previously unselected package r-cran-rcppprogress. 120s Preparing to unpack .../351-r-cran-rcppprogress_0.4.2-2build1_all.deb ... 120s Unpacking r-cran-rcppprogress (0.4.2-2build1) ... 121s Selecting previously unselected package r-cran-rocr. 121s Preparing to unpack .../352-r-cran-rocr_1.0-11-3_all.deb ... 121s Unpacking r-cran-rocr (1.0-11-3) ... 121s Selecting previously unselected package r-cran-rspectra. 121s Preparing to unpack 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Processing triggers for man-db (2.13.0-1) ... 127s Processing triggers for install-info (7.1.1-1) ... 128s Processing triggers for libc-bin (2.40-4ubuntu1) ... 129s autopkgtest [13:19:24]: test run-unit-test: [----------------------- 129s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 129s BEGIN TEST testthat.R 129s 129s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 129s Copyright (C) 2024 The R Foundation for Statistical Computing 129s Platform: x86_64-pc-linux-gnu 129s 129s R is free software and comes with ABSOLUTELY NO WARRANTY. 129s You are welcome to redistribute it under certain conditions. 129s Type 'license()' or 'licence()' for distribution details. 129s 129s R is a collaborative project with many contributors. 129s Type 'contributors()' for more information and 129s 'citation()' on how to cite R or R packages in publications. 129s 129s Type 'demo()' for some demos, 'help()' for on-line help, or 129s 'help.start()' for an HTML browser interface to help. 129s Type 'q()' to quit R. 129s 129s > library(testthat) 130s > library(Seurat) 130s Loading required package: SeuratObject 130s Loading required package: sp 132s ‘SeuratObject’ was built under R 4.4.1 but the current version is 132s 4.4.2; it is recomended that you reinstall ‘SeuratObject’ as the ABI 132s for R may have changed 132s ‘SeuratObject’ was built with package ‘Matrix’ 1.7.0 but the current 132s version is 1.7.1; it is recomended that you reinstall ‘SeuratObject’ as 132s the ABI for ‘Matrix’ may have changed 132s 132s Attaching package: ‘SeuratObject’ 132s 132s The following objects are masked from ‘package:base’: 132s 132s intersect, t 132s 135s Run tests for v5 assay 135s > # 135s > # # Run tests for 'v3' 135s > # message('Run tests for v3 assay') 135s > # options(Seurat.object.assay.version = 'v3') 135s > # test_check("Seurat") 135s > 135s > # Run tests for 'v5' 135s > message('Run tests for v5 assay') 135s > options(Seurat.object.assay.version = 'v5') 135s > test_check("Seurat") 136s | | | 0% | |======================================================================| 100% 219s Performing log-normalization 219s 0% 10 20 30 40 50 60 70 80 90 100% 219s [----|----|----|----|----|----|----|----|----|----| 220s **************************************************| 220s Performing log-normalization 220s 0% 10 20 30 40 50 60 70 80 90 100% 220s [----|----|----|----|----|----|----|----|----|----| 220s **************************************************| 220s Performing log-normalization 220s 0% 10 20 30 40 50 60 70 80 90 100% 220s [----|----|----|----|----|----|----|----|----|----| 220s **************************************************| 231s | | | 0% | |======================================================================| 100% 234s | | | 0% | |======================================================================| 100% 234s | | | 0% | |======================================================================| 100% 272s Performing log-normalization 272s 0% 10 20 30 40 50 60 70 80 90 100% 272s [----|----|----|----|----|----|----|----|----|----| 272s **************************************************| 272s Calculating gene variances 272s 0% 10 20 30 40 50 60 70 80 90 100% 272s [----|----|----|----|----|----|----|----|----|----| 272s **************************************************| 272s Calculating feature variances of standardized and clipped values 272s 0% 10 20 30 40 50 60 70 80 90 100% 272s [----|----|----|----|----|----|----|----|----|----| 272s **************************************************| 272s | | | 0% | |======================================================================| 100% 273s Modularity Optimizer version 1.3.0 by Ludo Waltman and Nees Jan van Eck 273s 273s Number of nodes: 80 273s Number of edges: 2045 273s 273s Running Louvain algorithm... 273s 0% 10 20 30 40 50 60 70 80 90 100% 273s [----|----|----|----|----|----|----|----|----|----| 273s ********************Maximum modularity in 10 random starts: -0.0613 273s Number of communities: 64 273s Elapsed time: 0 seconds 273s ******************************| 273s Performing log-normalization 273s 0% 10 20 30 40 50 60 70 80 90 100% 273s [----|----|----|----|----|----|----|----|----|----| 273s **************************************************| 273s | | | 0% | |======================================================================| 100% 274s | | | 0% | |======================================================================| 100% 275s | | | 0% | |======================================================================| 100% 277s | | | 0% | |======================================================================| 100% 279s | | | 0% | |======================================================================| 100% 279s [ FAIL 0 | WARN 210 | SKIP 32 | PASS 661 ] 279s 279s ══ Skipped tests (32) ══════════════════════════════════════════════════════════ 280s • arrow cannot be loaded (1): 'test_load_10X.R:179:3' 280s • On CRAN (29): 'test_differential_expression.R:307:3', 280s 'test_differential_expression.R:349:3', 280s 'test_differential_expression.R:446:3', 'test_dimensional_reduction.R:55:3', 280s 'test_integratedata.R:111:3', 'test_integration.R:74:3', 280s 'test_integration.R:105:3', 'test_integration.R:136:3', 280s 'test_integration.R:170:3', 'test_integration.R:202:3', 280s 'test_integration.R:234:3', 'test_integration.R:264:3', 280s 'test_integration.R:306:3', 'test_integration.R:335:3', 280s 'test_integration.R:365:3', 'test_integration5.R:38:3', 280s 'test_integration5.R:219:3', 'test_objects.R:6:3', 280s 'test_preprocessing.R:140:3', 'test_preprocessing.R:158:3', 280s 'test_preprocessing.R:433:3', 'test_preprocessing.R:554:3', 280s 'test_read_mtx.R:4:3', 'test_read_mtx.R:18:3', 'test_transferdata.R:65:3', 280s 'test_transferdata.R:88:3', 'test_transferdata.R:100:3', 280s 'test_transferdata.R:112:3', 'test_transferdata.R:128:3' 280s • sf cannot be loaded (2): 'test_spatial.R:115:3', 'test_spatial.R:266:3' 280s 280s [ FAIL 0 | WARN 210 | SKIP 32 | PASS 661 ] 280s > 280s > 280s > 281s autopkgtest [13:21:56]: test run-unit-test: -----------------------] 281s run-unit-test PASS 281s autopkgtest [13:21:56]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 282s autopkgtest [13:21:56]: test pkg-r-autopkgtest: preparing testbed 459s autopkgtest [13:24:54]: testbed dpkg architecture: amd64 459s autopkgtest [13:24:54]: testbed apt version: 2.9.18 459s autopkgtest [13:24:54]: @@@@@@@@@@@@@@@@@@@@ test bed setup 460s autopkgtest [13:24:55]: testbed release detected to be: plucky 460s autopkgtest [13:24:55]: updating testbed package index (apt update) 461s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 461s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 461s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 461s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 461s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [177 kB] 461s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [877 kB] 461s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 461s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.7 kB] 461s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [330 kB] 461s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [228 kB] 461s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2408 B] 461s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [40.1 kB] 461s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [464 kB] 461s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [1097 kB] 461s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [25.3 kB] 461s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [4856 B] 462s Fetched 3344 kB in 1s (3468 kB/s) 462s Reading package lists... 463s Reading package lists... 463s Building dependency tree... 463s Reading state information... 464s Calculating upgrade... 464s The following packages will be upgraded: 464s libgudev-1.0-0 usb.ids 464s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 464s Need to get 239 kB of archives. 464s After this operation, 0 B of additional disk space will be used. 464s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 usb.ids all 2025.01.14-1 [223 kB] 464s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libgudev-1.0-0 amd64 1:238-6 [15.8 kB] 465s Fetched 239 kB in 1s (477 kB/s) 465s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 465s Preparing to unpack .../usb.ids_2025.01.14-1_all.deb ... 465s Unpacking usb.ids (2025.01.14-1) over (2024.12.04-1) ... 465s Preparing to unpack .../libgudev-1.0-0_1%3a238-6_amd64.deb ... 465s Unpacking libgudev-1.0-0:amd64 (1:238-6) over (1:238-5ubuntu1) ... 465s Setting up usb.ids (2025.01.14-1) ... 465s Setting up libgudev-1.0-0:amd64 (1:238-6) ... 465s Processing triggers for libc-bin (2.40-4ubuntu1) ... 465s Reading package lists... 465s Building dependency tree... 465s Reading state information... 466s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 466s autopkgtest [13:25:01]: upgrading testbed (apt dist-upgrade and autopurge) 466s Reading package lists... 466s Building dependency tree... 466s Reading state information... 467s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 467s Starting 2 pkgProblemResolver with broken count: 0 467s Done 467s Entering ResolveByKeep 468s 468s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 468s Reading package lists... 468s Building dependency tree... 468s Reading state information... 468s Starting pkgProblemResolver with broken count: 0 468s Starting 2 pkgProblemResolver with broken count: 0 468s Done 469s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 472s Reading package lists... 472s Building dependency tree... 472s Reading state information... 472s Starting pkgProblemResolver with broken count: 10 472s Starting 2 pkgProblemResolver with broken count: 10 472s Investigating (0) r-bioc-s4vectors:amd64 < none -> 0.42.1+dfsg-2 @un puN Ib > 472s Broken r-bioc-s4vectors:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 472s Considering r-bioc-biocgenerics:amd64 45 as a solution to r-bioc-s4vectors:amd64 29 472s Re-Instated r-bioc-biocgenerics:amd64 472s Investigating (0) r-bioc-iranges:amd64 < none -> 2.38.1-1 @un puN Ib > 472s Broken r-bioc-iranges:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 472s Considering r-bioc-biocgenerics:amd64 29 as a solution to r-bioc-iranges:amd64 21 472s Investigating (0) r-bioc-genomeinfodb:amd64 < none -> 1.40.1+dfsg-1 @un puN Ib > 472s Broken r-bioc-genomeinfodb:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 472s Considering r-bioc-biocgenerics:amd64 29 as a solution to r-bioc-genomeinfodb:amd64 11 472s Broken r-bioc-genomeinfodb:amd64 Depends on r-bioc-ucsc.utils:amd64 < none | 1.0.0+ds-2 @un uH > (> 1.0.0+ds-1) 472s Considering r-bioc-ucsc.utils:amd64 0 as a solution to r-bioc-genomeinfodb:amd64 11 472s Reinst Failed because of protected r-bioc-biocgenerics:amd64 472s Considering r-bioc-ucsc.utils:amd64 0 as a solution to r-bioc-genomeinfodb:amd64 11 472s Broken r-bioc-genomeinfodb:amd64 Depends on r-bioc-genomeinfodbdata:amd64 < none | 1.2.13-2 @un uH > (>= 1.2.12) 472s Considering r-bioc-genomeinfodbdata:amd64 0 as a solution to r-bioc-genomeinfodb:amd64 11 472s Re-Instated r-bioc-genomeinfodbdata:amd64 472s Investigating (0) r-bioc-genomicranges:amd64 < none -> 1.56.2+dfsg-1 @un puN Ib > 472s Broken r-bioc-genomicranges:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 472s Considering r-bioc-biocgenerics:amd64 29 as a solution to r-bioc-genomicranges:amd64 8 472s Broken r-bioc-genomicranges:amd64 Depends on r-bioc-xvector:amd64 < none | 0.44.0-1 @un uH > (>= 0.29.2) 472s Considering r-bioc-xvector:amd64 0 as a solution to r-bioc-genomicranges:amd64 8 472s Reinst Failed because of protected r-bioc-biocgenerics:amd64 472s Considering r-bioc-xvector:amd64 0 as a solution to r-bioc-genomicranges:amd64 8 472s Investigating (0) r-bioc-delayedarray:amd64 < none -> 0.30.1+dfsg-1 @un puN Ib > 472s Broken r-bioc-delayedarray:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 472s Considering r-bioc-biocgenerics:amd64 29 as a solution to r-bioc-delayedarray:amd64 4 472s Broken r-bioc-delayedarray:amd64 Depends on r-bioc-matrixgenerics:amd64 < none | 1.16.0-2 @un uH > (>= 1.16.0) 472s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-delayedarray:amd64 4 472s Reinst Failed because of protected r-bioc-biocgenerics:amd64 472s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-delayedarray:amd64 4 472s Broken r-bioc-delayedarray:amd64 Depends on r-bioc-s4arrays:amd64 < none | 1.4.1+dfsg-1 @un uH > (>= 1.4.1) 472s Considering r-bioc-s4arrays:amd64 0 as a solution to r-bioc-delayedarray:amd64 4 472s Reinst Failed because of protected r-bioc-biocgenerics:amd64 472s Considering r-bioc-s4arrays:amd64 0 as a solution to r-bioc-delayedarray:amd64 4 472s Broken r-bioc-delayedarray:amd64 Depends on r-bioc-sparsearray:amd64 < none | 1.4.8+dfsg-1 @un uH > (>= 1.4.8) 472s Considering r-bioc-sparsearray:amd64 0 as a solution to r-bioc-delayedarray:amd64 4 472s Reinst Failed because of protected r-bioc-biocgenerics:amd64 472s Considering r-bioc-sparsearray:amd64 0 as a solution to r-bioc-delayedarray:amd64 4 472s Investigating (0) r-bioc-summarizedexperiment:amd64 < none -> 1.34.0+dfsg-1 @un puN Ib > 472s Broken r-bioc-summarizedexperiment:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 472s Considering r-bioc-biocgenerics:amd64 29 as a solution to r-bioc-summarizedexperiment:amd64 3 472s Broken r-bioc-summarizedexperiment:amd64 Depends on r-bioc-matrixgenerics:amd64 < none | 1.16.0-2 @un uH > (>= 1.16.0) 472s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-summarizedexperiment:amd64 3 472s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-summarizedexperiment:amd64 3 472s Broken r-bioc-summarizedexperiment:amd64 Depends on r-bioc-s4arrays:amd64 < none | 1.4.1+dfsg-1 @un uH > (>= 1.4.1) 472s Considering r-bioc-s4arrays:amd64 0 as a solution to r-bioc-summarizedexperiment:amd64 3 472s Considering r-bioc-s4arrays:amd64 0 as a solution to r-bioc-summarizedexperiment:amd64 3 472s Investigating (0) r-bioc-rtracklayer:amd64 < none -> 1.64.0-1 @un puN Ib > 472s Broken r-bioc-rtracklayer:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 472s Considering r-bioc-biocgenerics:amd64 29 as a solution to r-bioc-rtracklayer:amd64 1 472s Broken r-bioc-rtracklayer:amd64 Depends on r-cran-xml:amd64 < none | 3.99-0.18-1 @un uH > (>= 1.98-0) 472s Considering r-cran-xml:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 472s Re-Instated r-cran-xml:amd64 472s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-xvector:amd64 < none | 0.44.0-1 @un uH > (>= 0.44.0) 472s Considering r-bioc-xvector:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 472s Considering r-bioc-xvector:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 472s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-biostrings:amd64 < none | 2.72.1+dfsg-1 @un uH > (>= 2.72.1) 472s Considering r-bioc-biostrings:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 472s Reinst Failed because of protected r-bioc-biocgenerics:amd64 472s Considering r-bioc-biostrings:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 472s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-zlibbioc:amd64 < none | 1.50.0+dfsg-2 @un uH > (>= 1.50.0) 472s Considering r-bioc-zlibbioc:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 472s Reinst Failed because of protected r-bioc-biocgenerics:amd64 472s Considering r-bioc-zlibbioc:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 472s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-rsamtools:amd64 < none | 2.20.0+dfsg-1 @un uH > (>= 2.20.0) 472s Considering r-bioc-rsamtools:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 472s Reinst Failed because of protected r-bioc-biocgenerics:amd64 472s Considering r-bioc-rsamtools:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 472s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-genomicalignments:amd64 < none | 1.40.0-1 @un uH > (>= 1.40.0) 472s Considering r-bioc-genomicalignments:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 472s Reinst Failed because of protected r-bioc-biocgenerics:amd64 472s Considering r-bioc-genomicalignments:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 472s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-biocio:amd64 < none | 1.14.0+dfsg-1 @un uH > (>= 1.14.0) 472s Considering r-bioc-biocio:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 472s Reinst Failed because of protected r-bioc-biocgenerics:amd64 472s Considering r-bioc-biocio:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 472s Broken r-bioc-rtracklayer:amd64 Depends on r-cran-restfulr:amd64 < none | 0.0.15-1 @un uH > (>= 0.0.13) 472s Considering r-cran-restfulr:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 472s Re-Instated r-cran-rcurl:amd64 472s Re-Instated r-cran-rjson:amd64 472s Re-Instated r-cran-restfulr:amd64 472s Investigating (0) r-bioc-deseq2:amd64 < none -> 1.44.0+dfsg-1 @un puN Ib > 472s Broken r-bioc-deseq2:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 472s Considering r-bioc-biocgenerics:amd64 29 as a solution to r-bioc-deseq2:amd64 1 472s Broken r-bioc-deseq2:amd64 Depends on r-bioc-biocparallel:amd64 < none | 1.38.0-2 @un uH > (>= 1.38.0) 472s Considering r-bioc-biocparallel:amd64 0 as a solution to r-bioc-deseq2:amd64 1 472s Reinst Failed because of protected r-bioc-biocgenerics:amd64 472s Considering r-bioc-biocparallel:amd64 0 as a solution to r-bioc-deseq2:amd64 1 472s Broken r-bioc-deseq2:amd64 Depends on r-cran-locfit:amd64 < none | 1.5-9.10-1 @un uH > 472s Considering r-cran-locfit:amd64 2 as a solution to r-bioc-deseq2:amd64 1 472s Re-Instated r-cran-locfit:amd64 472s Broken r-bioc-deseq2:amd64 Depends on r-bioc-matrixgenerics:amd64 < none | 1.16.0-2 @un uH > (>= 1.16.0) 472s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-deseq2:amd64 1 472s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-deseq2:amd64 1 472s Investigating (0) r-bioc-limma:amd64 < none -> 3.60.6+dfsg-1 @un puN Ib > 472s Broken r-bioc-limma:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 472s Considering r-bioc-biocgenerics:amd64 29 as a solution to r-bioc-limma:amd64 1 472s Broken r-bioc-limma:amd64 Depends on r-cran-statmod:amd64 < none | 1.5.0-1 @un uH > 472s Considering r-cran-statmod:amd64 1 as a solution to r-bioc-limma:amd64 1 472s Re-Instated r-cran-statmod:amd64 472s Investigating (0) r-bioc-multtest:amd64 < none -> 2.60.0-1 @un puN Ib > 472s Broken r-bioc-multtest:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 472s Considering r-bioc-biocgenerics:amd64 29 as a solution to r-bioc-multtest:amd64 0 472s Done 472s Some packages could not be installed. This may mean that you have 472s requested an impossible situation or if you are using the unstable 472s distribution that some required packages have not yet been created 472s or been moved out of Incoming. 472s The following information may help to resolve the situation: 472s 472s The following packages have unmet dependencies: 472s r-bioc-delayedarray : Depends: r-api-bioc-3.19 472s Depends: r-bioc-matrixgenerics (>= 1.16.0) but it is not going to be installed 472s Depends: r-bioc-s4arrays (>= 1.4.1) but it is not going to be installed 472s Depends: r-bioc-sparsearray (>= 1.4.8) but it is not going to be installed 472s r-bioc-deseq2 : Depends: r-api-bioc-3.19 472s Depends: r-bioc-biocparallel (>= 1.38.0) but it is not going to be installed 472s Depends: r-bioc-matrixgenerics (>= 1.16.0) but it is not going to be installed 472s r-bioc-genomeinfodb : Depends: r-api-bioc-3.19 472s Depends: r-bioc-ucsc.utils (> 1.0.0+ds-1) but it is not going to be installed 472s r-bioc-genomicranges : Depends: r-api-bioc-3.19 472s Depends: r-bioc-xvector (>= 0.29.2) but it is not going to be installed 472s r-bioc-iranges : Depends: r-api-bioc-3.19 472s r-bioc-limma : Depends: r-api-bioc-3.19 472s r-bioc-multtest : Depends: r-api-bioc-3.19 472s r-bioc-rtracklayer : Depends: r-api-bioc-3.19 472s Depends: r-bioc-xvector (>= 0.44.0) but it is not going to be installed 472s Depends: r-bioc-biostrings (>= 2.72.1) but it is not going to be installed 472s Depends: r-bioc-zlibbioc (>= 1.50.0) but it is not going to be installed 472s Depends: r-bioc-rsamtools (>= 2.20.0) but it is not going to be installed 472s Depends: r-bioc-genomicalignments (>= 1.40.0) but it is not going to be installed 472s Depends: r-bioc-biocio (>= 1.14.0) but it is not going to be installed 472s r-bioc-s4vectors : Depends: r-api-bioc-3.19 472s r-bioc-summarizedexperiment : Depends: r-api-bioc-3.19 472s Depends: r-bioc-matrixgenerics (>= 1.16.0) but it is not going to be installed 472s Depends: r-bioc-s4arrays (>= 1.4.1) but it is not going to be installed 472s E: Unable to correct problems, you have held broken packages. 472s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed 473s Reading package lists... 473s Building dependency tree... 473s Reading state information... 473s Starting pkgProblemResolver with broken count: 0 474s Starting 2 pkgProblemResolver with broken count: 0 474s Done 474s The following NEW packages will be installed: 474s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 474s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 474s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-14 474s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 474s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 474s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 474s javascript-common libamd3 libasan8 libblas-dev libblas3 libboost-dev 474s libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libcolamd3 libdatrie1 474s libdeflate-dev libdeflate0 libfftw3-double3 libfontconfig1 libgcc-14-dev 474s libgfortran-14-dev libgfortran5 libglpk40 libgomp1 libgraphite2-3 474s libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 474s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 474s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 474s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 474s libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js 474s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 474s libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 liblerc4 474s liblsan0 libltdl7 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev 474s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 474s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 474s libpixman-1-0 libpkgconf3 libpng-dev libquadmath0 libreadline-dev 474s libsharpyuv0 libsm6 libstdc++-14-dev libsuitesparseconfig7 libtcl8.6 474s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 474s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 474s littler node-bootstrap-sass node-html5shiv node-normalize.css pandoc 474s pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 474s r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 474s r-bioc-biostrings r-bioc-delayedarray r-bioc-deseq2 r-bioc-genomeinfodb 474s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges 474s r-bioc-iranges r-bioc-limma r-bioc-matrixgenerics r-bioc-multtest 474s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 474s r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment 474s r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-ape 474s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-bitops r-cran-brio 474s r-cran-bslib r-cran-cachem r-cran-callr r-cran-caret r-cran-catools 474s r-cran-class r-cran-cli r-cran-clock r-cran-cluster r-cran-codetools 474s r-cran-colorspace r-cran-colourpicker r-cran-commonmark r-cran-conquer 474s r-cran-cowplot r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl 474s r-cran-data.table r-cran-deldir r-cran-deoptimr r-cran-desc r-cran-diagram 474s r-cran-diffobj r-cran-digest r-cran-dotcall64 r-cran-dplyr r-cran-dqrng 474s r-cran-e1071 r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastdummies 474s r-cran-fastmap r-cran-fitdistrplus r-cran-fnn r-cran-fontawesome 474s r-cran-foreach r-cran-formatr r-cran-fs r-cran-futile.logger 474s r-cran-futile.options r-cran-future r-cran-future.apply r-cran-gdata 474s r-cran-generics r-cran-ggplot2 r-cran-ggrepel r-cran-ggridges r-cran-globals 474s r-cran-glue r-cran-goftest r-cran-gower r-cran-gplots r-cran-gridextra 474s r-cran-gtable r-cran-gtools r-cran-hardhat r-cran-here r-cran-highr 474s r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-ica 474s r-cran-igraph r-cran-ipred r-cran-irlba r-cran-isoband r-cran-iterators 474s r-cran-jquerylib r-cran-jsonlite r-cran-kernlab r-cran-kernsmooth 474s r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice 474s r-cran-lava r-cran-lazyeval r-cran-leiden r-cran-lifecycle r-cran-listenv 474s r-cran-littler r-cran-lmtest r-cran-locfit r-cran-lubridate r-cran-magrittr 474s r-cran-mass r-cran-mathjaxr r-cran-matrix r-cran-matrixmodels 474s r-cran-matrixstats r-cran-memoise r-cran-metap r-cran-mgcv r-cran-mime 474s r-cran-miniui r-cran-mixtools r-cran-mnormt r-cran-modelmetrics 474s r-cran-multcomp r-cran-munsell r-cran-mutoss r-cran-mvtnorm r-cran-nlme 474s r-cran-nnet r-cran-numderiv r-cran-openssl r-cran-parallelly 474s r-cran-patchwork r-cran-pbapply r-cran-pillar r-cran-pkgbuild 474s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plotly 474s r-cran-plotrix r-cran-plyr r-cran-png r-cran-polyclip r-cran-praise 474s r-cran-proc r-cran-processx r-cran-prodlim r-cran-progressr r-cran-promises 474s r-cran-proxy r-cran-ps r-cran-purrr r-cran-qqconf r-cran-quantreg 474s r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rann 474s r-cran-rappdirs r-cran-rbibutils r-cran-rcolorbrewer r-cran-rcpp 474s r-cran-rcppannoy r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcpphnsw 474s r-cran-rcppprogress r-cran-rcpptoml r-cran-rcurl r-cran-rdpack 474s r-cran-recipes r-cran-reshape2 r-cran-restfulr r-cran-reticulate 474s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-robustbase r-cran-rocr 474s r-cran-rpart r-cran-rprojroot r-cran-rspectra r-cran-rsvd r-cran-rtsne 474s r-cran-sandwich r-cran-sass r-cran-scales r-cran-scattermore 474s r-cran-sctransform r-cran-segmented r-cran-seurat r-cran-seuratobject 474s r-cran-shape r-cran-shiny r-cran-shinyjs r-cran-sitmo r-cran-sn r-cran-snow 474s r-cran-sourcetools r-cran-sp r-cran-spam r-cran-sparsem r-cran-spatstat.data 474s r-cran-spatstat.explore r-cran-spatstat.geom r-cran-spatstat.random 474s r-cran-spatstat.sparse r-cran-spatstat.utils r-cran-squarem r-cran-statmod 474s r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tensor 474s r-cran-testthat r-cran-tfisher r-cran-th.data r-cran-tibble r-cran-tidyr 474s r-cran-tidyselect r-cran-timechange r-cran-timedate r-cran-tinytex 474s r-cran-tzdb r-cran-utf8 r-cran-uwot r-cran-vctrs r-cran-vgam 474s r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml 474s r-cran-xtable r-cran-yaml r-cran-zoo unzip x11-common xdg-utils zip 474s zlib1g-dev 474s The following packages will be upgraded: 474s gcc-14-base libatomic1 libgcc-s1 libpng16-16t64 libstdc++6 474s 5 upgraded, 386 newly installed, 0 to remove and 125 not upgraded. 474s Need to get 458 MB of archives. 474s After this operation, 1318 MB of additional disk space will be used. 474s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 gcc-14-base amd64 14.2.0-13ubuntu1 [53.0 kB] 474s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libstdc++6 amd64 14.2.0-13ubuntu1 [787 kB] 475s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libatomic1 amd64 14.2.0-13ubuntu1 [10.3 kB] 475s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgcc-s1 amd64 14.2.0-13ubuntu1 [78.2 kB] 475s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpng16-16t64 amd64 1.6.45-1 [219 kB] 475s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 475s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 475s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-13ubuntu1 [11.9 MB] 475s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 cpp-14 amd64 14.2.0-13ubuntu1 [1032 B] 475s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 475s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 475s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libcc1-0 amd64 14.2.0-13ubuntu1 [47.6 kB] 475s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgomp1 amd64 14.2.0-13ubuntu1 [148 kB] 475s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libitm1 amd64 14.2.0-13ubuntu1 [29.1 kB] 475s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libasan8 amd64 14.2.0-13ubuntu1 [2998 kB] 475s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 liblsan0 amd64 14.2.0-13ubuntu1 [1317 kB] 475s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libtsan2 amd64 14.2.0-13ubuntu1 [2732 kB] 476s Get:18 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libubsan1 amd64 14.2.0-13ubuntu1 [1177 kB] 476s Get:19 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libhwasan0 amd64 14.2.0-13ubuntu1 [1634 kB] 476s Get:20 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libquadmath0 amd64 14.2.0-13ubuntu1 [153 kB] 476s Get:21 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgcc-14-dev amd64 14.2.0-13ubuntu1 [2815 kB] 476s Get:22 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-13ubuntu1 [23.4 MB] 477s Get:23 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 gcc-14 amd64 14.2.0-13ubuntu1 [534 kB] 477s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 477s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 477s Get:26 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libstdc++-14-dev amd64 14.2.0-13ubuntu1 [2508 kB] 477s Get:27 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-13ubuntu1 [13.3 MB] 478s Get:28 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 g++-14 amd64 14.2.0-13ubuntu1 [21.1 kB] 478s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 478s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 478s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 478s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 478s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 478s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 478s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 478s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 478s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 478s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 478s Get:39 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 478s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 478s Get:41 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgfortran5 amd64 14.2.0-13ubuntu1 [909 kB] 478s Get:42 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgfortran-14-dev amd64 14.2.0-13ubuntu1 [965 kB] 478s Get:43 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-13ubuntu1 [12.5 MB] 479s Get:44 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 gfortran-14 amd64 14.2.0-13ubuntu1 [13.2 kB] 479s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1022 B] 479s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.1.0-2ubuntu1 [1172 B] 479s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 479s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 11+nmu1 [5936 B] 479s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libsuitesparseconfig7 amd64 1:7.8.3+dfsg-2 [13.4 kB] 479s Get:50 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamd3 amd64 1:7.8.3+dfsg-2 [31.1 kB] 479s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-4 [332 kB] 479s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.0-4 [307 kB] 479s Get:53 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost1.83-dev amd64 1.83.0-4ubuntu2 [10.7 MB] 480s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 480s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 480s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 480s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 480s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 480s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 480s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 480s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libcolamd3 amd64 1:7.8.3+dfsg-2 [19.5 kB] 480s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 480s Get:63 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 480s Get:64 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 480s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libfftw3-double3 amd64 3.3.10-2fakesync1build1 [839 kB] 480s Get:66 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libltdl7 amd64 2.5.4-2 [46.0 kB] 480s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 libglpk40 amd64 5.0-1build2 [369 kB] 480s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 480s Get:69 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 480s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 480s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 480s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 480s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 480s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 480s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 480s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 480s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 480s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 480s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 480s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 480s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 480s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 480s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 480s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 480s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 480s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 480s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 480s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 480s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 480s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 480s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 481s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-4 [3177 kB] 481s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.0-4 [6486 kB] 481s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 481s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 481s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5-2 [384 kB] 481s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 481s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 481s Get:99 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpango-1.0-0 amd64 1.56.0-3 [255 kB] 481s Get:100 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpangoft2-1.0-0 amd64 1.56.0-3 [52.5 kB] 481s Get:101 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpangocairo-1.0-0 amd64 1.56.0-3 [29.1 kB] 481s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 481s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 481s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu3 [214 kB] 482s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu3 [201 kB] 482s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu3 [6768 B] 482s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.42-4ubuntu3 [747 kB] 482s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 482s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 482s Get:110 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpng-dev amd64 1.6.45-1 [300 kB] 482s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 482s Get:112 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 482s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 482s Get:114 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 482s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 482s Get:116 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 482s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 482s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 482s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 482s Get:120 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 482s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 482s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu1 [185 kB] 482s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 482s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-0ubuntu1 [67.5 kB] 482s Get:125 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-base-core amd64 4.4.2-1build1 [28.9 MB] 483s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 483s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 483s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 483s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 483s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 483s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 483s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 484s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.3-1 [189 kB] 484s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 484s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 484s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 484s Get:137 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-base-dev all 4.4.2-1build1 [4342 B] 484s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 484s Get:139 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 484s Get:140 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 484s Get:141 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 484s Get:142 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 484s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 484s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 484s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 484s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 484s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 484s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 484s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 484s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.0-1 [221 kB] 484s Get:151 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 484s Get:152 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB] 484s Get:153 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 484s Get:154 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 484s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 5.2.3+dfsg-1ubuntu1 [180 kB] 484s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.8.9+dfsg-1 [445 kB] 484s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 484s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 484s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 484s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.2.0+dfsg-1 [405 kB] 484s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 484s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 484s Get:163 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 484s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 485s Get:165 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-genomeinfodb all 1.42.1+dfsg-2 [3883 kB] 485s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 485s Get:167 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 486s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 486s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-1-1 [4199 kB] 486s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.4.1-1 [513 kB] 486s Get:171 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-matrixgenerics all 1.18.0-2 [446 kB] 486s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 486s Get:173 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 486s Get:174 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-sparsearray amd64 1.6.0+dfsg-2 [1392 kB] 486s Get:175 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 486s Get:176 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB] 486s Get:177 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 486s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-locfit amd64 1.5-9.10-1 [518 kB] 486s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.3-1 [1348 kB] 486s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 486s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.4-1 [1708 kB] 486s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 486s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 486s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 486s Get:185 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 487s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.166-1 [2314 kB] 487s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 487s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 487s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 487s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 487s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB] 487s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 487s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 487s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 487s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 487s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 487s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 487s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 487s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 487s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 487s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 487s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 487s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 488s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 488s Get:205 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 488s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpparmadillo amd64 14.2.2-1-1 [864 kB] 488s Get:207 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-deseq2 amd64 1.46.0+dfsg-2 [1250 kB] 488s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bitops amd64 1.0-8-1 [30.3 kB] 488s Get:209 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB] 488s Get:210 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB] 488s Get:211 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB] 488s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 488s Get:213 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-limma amd64 3.62.2+dfsg-1 [1969 kB] 488s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB] 489s Get:215 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-multtest amd64 2.62.0-2 [844 kB] 489s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml amd64 3.99-0.18-1 [1748 kB] 489s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB] 489s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB] 489s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 489s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 489s Get:221 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-rtracklayer amd64 1.66.0-2 [5227 kB] 489s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 489s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ape amd64 5.8-1 [2923 kB] 489s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 489s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 489s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 489s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 489s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 489s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 489s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 489s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.4+dfsg-1 [245 kB] 489s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 489s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 489s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.7.0+dfsg-1 [4255 kB] 489s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.8.0-1 [395 kB] 489s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.4-1 [353 kB] 490s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 490s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 490s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 490s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-e1071 amd64 1.7-16-1 [565 kB] 490s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-iterators all 1.0.14-1 [336 kB] 490s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-foreach all 1.5.2-1 [124 kB] 490s Get:243 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-data.table amd64 1.16.4+dfsg-1 [2032 kB] 490s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-modelmetrics amd64 1.2.2.2-1build1 [128 kB] 490s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 490s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-proc amd64 1.18.5-1 [966 kB] 490s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 490s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 490s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 490s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tzdb amd64 0.4.0-2 [521 kB] 490s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-clock amd64 0.7.1-1 [1804 kB] 490s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gower amd64 1.0.1-1 [207 kB] 490s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-hardhat all 1.4.0+dfsg-1 [565 kB] 490s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB] 490s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nnet amd64 7.3-20-1 [116 kB] 490s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shape all 1.4.6.1-1 [749 kB] 490s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diagram all 1.6.5-2 [656 kB] 490s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernsmooth amd64 2.23-26-1 [94.5 kB] 490s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-globals all 0.16.3-1 [120 kB] 490s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 490s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-parallelly amd64 1.38.0-1 [385 kB] 490s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 490s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future.apply all 1.11.2+dfsg-1 [172 kB] 490s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-numderiv all 2016.8-1.1-3 [115 kB] 490s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-progressr all 0.14.0-1 [338 kB] 490s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-squarem all 2021.1-1 [179 kB] 490s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lava all 1.7.3+dfsg-1 [2166 kB] 490s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-prodlim amd64 2024.06.25-1 [415 kB] 490s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ipred amd64 0.9-15-1 [386 kB] 490s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-timechange amd64 0.3.0-1 [178 kB] 490s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lubridate amd64 1.9.3+dfsg-1 [1010 kB] 490s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 490s Get:273 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB] 490s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 490s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 490s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-timedate amd64 4041.110-1 [1208 kB] 491s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-recipes all 1.1.0+dfsg-1 [2035 kB] 491s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-reshape2 amd64 1.4.4-2build1 [114 kB] 491s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-caret amd64 6.0-94+dfsg-1 [3434 kB] 491s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-catools amd64 1.18.2-1 [201 kB] 491s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cluster amd64 2.1.8-1 [579 kB] 491s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.0-1 [111 kB] 491s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.49+dfsg-1 [545 kB] 491s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 491s Get:285 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 491s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 491s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 491s Get:288 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.53-1 [145 kB] 491s Get:289 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 491s Get:290 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 491s Get:291 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.0+dfsg-1 [287 kB] 491s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 491s Get:293 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 491s Get:294 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 491s Get:295 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 491s Get:296 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 491s Get:297 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.9.1+dfsg-1 [3111 kB] 491s Get:298 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.28+dfsg-1 [1501 kB] 491s Get:299 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 491s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-miniui all 0.1.1.1-3build1 [36.1 kB] 491s Get:301 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shinyjs all 2.1.0-1 [967 kB] 491s Get:302 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colourpicker all 1.3.0+dfsg-1 [1191 kB] 491s Get:303 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-conquer amd64 1.3.3-1 [499 kB] 492s Get:304 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cowplot all 1.1.3+dfsg-1 [614 kB] 492s Get:305 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 492s Get:306 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 492s Get:307 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 492s Get:308 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deoptimr all 1.1-3-1-1 [76.6 kB] 492s Get:309 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 492s Get:310 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 492s Get:311 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dotcall64 amd64 1.1-1-1 [38.1 kB] 492s Get:312 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sitmo amd64 2.0.2-1 [130 kB] 492s Get:313 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dqrng amd64 0.3.2+dfsg-1 [161 kB] 492s Get:314 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastdummies all 1.7.4-1 [49.7 kB] 492s Get:315 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fitdistrplus all 1.2-1-1 [2038 kB] 492s Get:316 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB] 492s Get:317 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtools amd64 3.9.5-1 [340 kB] 492s Get:318 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gdata all 3.0.1-1 [491 kB] 492s Get:319 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggrepel amd64 0.9.5-2 [254 kB] 492s Get:320 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggridges all 0.5.6-1 [2195 kB] 493s Get:321 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-goftest amd64 1.2-3-1 [59.5 kB] 493s Get:322 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gplots all 3.2.0-1 [484 kB] 493s Get:323 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 493s Get:324 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 493s Get:325 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-here all 1.0.1-2 [50.3 kB] 493s Get:326 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ica all 1.0-3-1 [85.4 kB] 493s Get:327 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-igraph amd64 2.0.3-1 [5098 kB] 493s Get:328 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-irlba amd64 2.3.5.1-4 [295 kB] 493s Get:329 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernlab amd64 0.9-33-1 [1947 kB] 493s Get:330 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpptoml amd64 0.2.2+dfsg-1 [110 kB] 493s Get:331 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 493s Get:332 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-reticulate amd64 1.39.0+dfsg-1 [1238 kB] 493s Get:333 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-leiden all 0.4.3.1+dfsg-1 [71.9 kB] 493s Get:334 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-zoo amd64 1.8-12-2 [984 kB] 493s Get:335 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lmtest amd64 0.9.40-1 [396 kB] 493s Get:336 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mathjaxr all 1.6-0-1 [605 kB] 493s Get:337 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixmodels all 0.5-3-1 [361 kB] 493s Get:338 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rbibutils amd64 2.3-1 [1023 kB] 493s Get:339 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rdpack all 2.6.2-1 [757 kB] 493s Get:340 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mnormt amd64 2.1.1-2 [170 kB] 493s Get:341 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sparsem amd64 1.84-2-1 [813 kB] 493s Get:342 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-quantreg amd64 5.99.1-1 [1455 kB] 493s Get:343 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sn all 2.1.1-2 [1815 kB] 493s Get:344 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-mvtnorm amd64 1.3-3-1 [923 kB] 493s Get:345 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tfisher all 0.2.0-3 [79.8 kB] 493s Get:346 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plotrix all 3.8-4-1 [1120 kB] 493s Get:347 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-th.data all 1.1-2-2 [8794 kB] 494s Get:348 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sandwich all 3.1-1-1 [1483 kB] 494s Get:349 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-multcomp all 1.4-26-2 [699 kB] 494s Get:350 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mutoss all 0.1-13-1 [1123 kB] 494s Get:351 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-robustbase amd64 0.99-4-1-1 [3038 kB] 494s Get:352 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-qqconf amd64 1.3.2+dfsg-1 [157 kB] 494s Get:353 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-metap all 1.11-1 [570 kB] 494s Get:354 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plotly all 4.10.4+dfsg-2 [3666 kB] 494s Get:355 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-segmented all 2.1-3-1 [1366 kB] 494s Get:356 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mixtools amd64 2.0.0-1 [1399 kB] 494s Get:357 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-patchwork all 1.3.0-1 [3220 kB] 494s Get:358 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 494s Get:359 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.4-1 [212 kB] 494s Get:360 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 494s Get:361 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB] 494s Get:362 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 494s Get:363 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 494s Get:364 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.oo all 1.26.0-1 [955 kB] 494s Get:365 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.utils all 2.12.3-1 [1386 kB] 494s Get:366 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rann amd64 2.6.2-1 [46.3 kB] 494s Get:367 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppannoy amd64 0.0.22-1 [235 kB] 494s Get:368 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 495s Get:369 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpphnsw amd64 0.5.0+ds-1 [171 kB] 495s Get:370 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppprogress all 0.4.2-2build1 [22.0 kB] 495s Get:371 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rocr all 1.0-11-3 [456 kB] 495s Get:372 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rspectra amd64 0.16-2-1 [448 kB] 495s Get:373 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsvd all 1.0.5-1 [3589 kB] 495s Get:374 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rtsne amd64 0.17-1 [109 kB] 495s Get:375 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scattermore amd64 1.2-1 [331 kB] 495s Get:376 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sctransform amd64 0.4.1-1 [504 kB] 495s Get:377 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sp amd64 1:2.1-4+dfsg-1 [1472 kB] 495s Get:378 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spam amd64 2.11-0-1 [2758 kB] 495s Get:379 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-seuratobject amd64 5.0.2-1 [1744 kB] 495s Get:380 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.utils amd64 3.1-0-1 [381 kB] 495s Get:381 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.data all 3.1-2-1 [4039 kB] 495s Get:382 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.geom amd64 3.2-9-2 [3946 kB] 495s Get:383 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.random amd64 3.2-3-1 [1169 kB] 495s Get:384 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tensor all 1.5-4 [15.7 kB] 495s Get:385 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.sparse amd64 3.0-3-1 [215 kB] 495s Get:386 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.explore amd64 3.2-7-1 [3432 kB] 495s Get:387 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-uwot amd64 0.2.2-1 [947 kB] 495s Get:388 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-seurat amd64 5.1.0-1 [3255 kB] 496s Get:389 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-1 [150 kB] 496s Get:390 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.1.1-1 [1636 kB] 496s Get:391 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vgam amd64 1.1-11-1 [7726 kB] 497s Preconfiguring packages ... 497s Fetched 458 MB in 22s (20.8 MB/s) 497s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 497s Preparing to unpack .../gcc-14-base_14.2.0-13ubuntu1_amd64.deb ... 497s Unpacking gcc-14-base:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 497s Setting up gcc-14-base:amd64 (14.2.0-13ubuntu1) ... 497s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 497s Preparing to unpack .../libstdc++6_14.2.0-13ubuntu1_amd64.deb ... 497s Unpacking libstdc++6:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 497s Setting up libstdc++6:amd64 (14.2.0-13ubuntu1) ... 497s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 497s Preparing to unpack .../libatomic1_14.2.0-13ubuntu1_amd64.deb ... 497s Unpacking libatomic1:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 497s Preparing to unpack .../libgcc-s1_14.2.0-13ubuntu1_amd64.deb ... 497s Unpacking libgcc-s1:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 497s Setting up libgcc-s1:amd64 (14.2.0-13ubuntu1) ... 497s (Reading database ... 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previously unselected package libubsan1:amd64. 498s Preparing to unpack .../013-libubsan1_14.2.0-13ubuntu1_amd64.deb ... 498s Unpacking libubsan1:amd64 (14.2.0-13ubuntu1) ... 498s Selecting previously unselected package libhwasan0:amd64. 498s Preparing to unpack .../014-libhwasan0_14.2.0-13ubuntu1_amd64.deb ... 498s Unpacking libhwasan0:amd64 (14.2.0-13ubuntu1) ... 498s Selecting previously unselected package libquadmath0:amd64. 498s Preparing to unpack .../015-libquadmath0_14.2.0-13ubuntu1_amd64.deb ... 498s Unpacking libquadmath0:amd64 (14.2.0-13ubuntu1) ... 498s Selecting previously unselected package libgcc-14-dev:amd64. 498s Preparing to unpack .../016-libgcc-14-dev_14.2.0-13ubuntu1_amd64.deb ... 498s Unpacking libgcc-14-dev:amd64 (14.2.0-13ubuntu1) ... 498s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 498s Preparing to unpack .../017-gcc-14-x86-64-linux-gnu_14.2.0-13ubuntu1_amd64.deb ... 498s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-13ubuntu1) ... 498s 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unselected package g++-14. 499s Preparing to unpack .../023-g++-14_14.2.0-13ubuntu1_amd64.deb ... 499s Unpacking g++-14 (14.2.0-13ubuntu1) ... 499s Selecting previously unselected package g++-x86-64-linux-gnu. 499s Preparing to unpack .../024-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 499s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 499s Selecting previously unselected package g++. 499s Preparing to unpack .../025-g++_4%3a14.1.0-2ubuntu1_amd64.deb ... 499s Unpacking g++ (4:14.1.0-2ubuntu1) ... 499s Selecting previously unselected package build-essential. 499s Preparing to unpack .../026-build-essential_12.10ubuntu1_amd64.deb ... 499s Unpacking build-essential (12.10ubuntu1) ... 499s Selecting previously unselected package dctrl-tools. 499s Preparing to unpack .../027-dctrl-tools_2.24-3build3_amd64.deb ... 499s Unpacking dctrl-tools (2.24-3build3) ... 499s Selecting previously unselected package fonts-dejavu-mono. 499s Preparing to unpack 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.../033-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 499s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 499s Selecting previously unselected package fonts-glyphicons-halflings. 499s Preparing to unpack .../034-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 499s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 499s Selecting previously unselected package fonts-mathjax. 499s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 499s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 499s Selecting previously unselected package libgfortran5:amd64. 499s Preparing to unpack .../036-libgfortran5_14.2.0-13ubuntu1_amd64.deb ... 499s Unpacking libgfortran5:amd64 (14.2.0-13ubuntu1) ... 499s Selecting previously unselected package libgfortran-14-dev:amd64. 499s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-13ubuntu1_amd64.deb ... 499s Unpacking libgfortran-14-dev:amd64 (14.2.0-13ubuntu1) ... 499s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 499s Preparing to unpack .../038-gfortran-14-x86-64-linux-gnu_14.2.0-13ubuntu1_amd64.deb ... 499s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-13ubuntu1) ... 499s Selecting previously unselected package gfortran-14. 500s Preparing to unpack .../039-gfortran-14_14.2.0-13ubuntu1_amd64.deb ... 500s Unpacking gfortran-14 (14.2.0-13ubuntu1) ... 500s Selecting previously unselected package gfortran-x86-64-linux-gnu. 500s Preparing to unpack .../040-gfortran-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 500s Unpacking gfortran-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 500s Selecting previously unselected package gfortran. 500s Preparing to unpack .../041-gfortran_4%3a14.1.0-2ubuntu1_amd64.deb ... 500s Unpacking gfortran (4:14.1.0-2ubuntu1) ... 500s Selecting previously unselected package icu-devtools. 500s Preparing to unpack .../042-icu-devtools_76.1-1ubuntu2_amd64.deb ... 500s Unpacking icu-devtools (76.1-1ubuntu2) ... 500s Selecting previously unselected package javascript-common. 500s Preparing to unpack .../043-javascript-common_11+nmu1_all.deb ... 500s Unpacking javascript-common (11+nmu1) ... 500s Selecting previously unselected package libsuitesparseconfig7:amd64. 500s Preparing to unpack .../044-libsuitesparseconfig7_1%3a7.8.3+dfsg-2_amd64.deb ... 500s Unpacking libsuitesparseconfig7:amd64 (1:7.8.3+dfsg-2) ... 500s Selecting previously unselected package libamd3:amd64. 500s Preparing to unpack .../045-libamd3_1%3a7.8.3+dfsg-2_amd64.deb ... 500s Unpacking libamd3:amd64 (1:7.8.3+dfsg-2) ... 500s Selecting previously unselected package libblas3:amd64. 500s Preparing to unpack .../046-libblas3_3.12.0-4_amd64.deb ... 500s Unpacking libblas3:amd64 (3.12.0-4) ... 500s Selecting previously unselected package libblas-dev:amd64. 500s Preparing to unpack .../047-libblas-dev_3.12.0-4_amd64.deb ... 500s Unpacking libblas-dev:amd64 (3.12.0-4) ... 500s Selecting previously unselected package libboost1.83-dev:amd64. 500s Preparing to unpack .../048-libboost1.83-dev_1.83.0-4ubuntu2_amd64.deb ... 500s Unpacking libboost1.83-dev:amd64 (1.83.0-4ubuntu2) ... 502s Selecting previously unselected package libboost-dev:amd64. 502s Preparing to unpack .../049-libboost-dev_1.83.0.2ubuntu1_amd64.deb ... 502s Unpacking libboost-dev:amd64 (1.83.0.2ubuntu1) ... 502s Selecting previously unselected package libbz2-dev:amd64. 502s Preparing to unpack .../050-libbz2-dev_1.0.8-6_amd64.deb ... 502s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 502s Selecting previously unselected package libpixman-1-0:amd64. 502s Preparing to unpack .../051-libpixman-1-0_0.44.0-3_amd64.deb ... 502s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 502s Selecting previously unselected package libxcb-render0:amd64. 502s Preparing to unpack .../052-libxcb-render0_1.17.0-2_amd64.deb ... 502s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 502s Selecting previously unselected package libxcb-shm0:amd64. 502s Preparing to unpack .../053-libxcb-shm0_1.17.0-2_amd64.deb ... 502s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 502s Selecting previously unselected package libxrender1:amd64. 502s Preparing to unpack .../054-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 502s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 502s Selecting previously unselected package libcairo2:amd64. 502s Preparing to unpack .../055-libcairo2_1.18.2-2_amd64.deb ... 502s Unpacking libcairo2:amd64 (1.18.2-2) ... 502s Selecting previously unselected package libcolamd3:amd64. 502s Preparing to unpack .../056-libcolamd3_1%3a7.8.3+dfsg-2_amd64.deb ... 502s Unpacking libcolamd3:amd64 (1:7.8.3+dfsg-2) ... 502s Selecting previously unselected package libdatrie1:amd64. 502s Preparing to unpack .../057-libdatrie1_0.2.13-3build1_amd64.deb ... 502s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 502s Selecting previously unselected package libdeflate0:amd64. 502s Preparing to unpack .../058-libdeflate0_1.23-1_amd64.deb ... 502s Unpacking libdeflate0:amd64 (1.23-1) ... 502s Selecting previously unselected package libdeflate-dev:amd64. 502s Preparing to unpack .../059-libdeflate-dev_1.23-1_amd64.deb ... 502s Unpacking libdeflate-dev:amd64 (1.23-1) ... 502s Selecting previously unselected package libfftw3-double3:amd64. 502s Preparing to unpack .../060-libfftw3-double3_3.3.10-2fakesync1build1_amd64.deb ... 502s Unpacking libfftw3-double3:amd64 (3.3.10-2fakesync1build1) ... 502s Selecting previously unselected package libltdl7:amd64. 502s Preparing to unpack .../061-libltdl7_2.5.4-2_amd64.deb ... 502s Unpacking libltdl7:amd64 (2.5.4-2) ... 502s Selecting previously unselected package libglpk40:amd64. 502s Preparing to unpack .../062-libglpk40_5.0-1build2_amd64.deb ... 502s Unpacking libglpk40:amd64 (5.0-1build2) ... 502s Selecting previously unselected package libgraphite2-3:amd64. 502s Preparing to unpack .../063-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 502s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 502s Selecting previously unselected package libharfbuzz0b:amd64. 502s Preparing to unpack .../064-libharfbuzz0b_10.2.0-1_amd64.deb ... 502s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 502s Selecting previously unselected package x11-common. 502s Preparing to unpack .../065-x11-common_1%3a7.7+23ubuntu3_all.deb ... 502s Unpacking x11-common (1:7.7+23ubuntu3) ... 502s Selecting previously unselected package libice6:amd64. 502s Preparing to unpack .../066-libice6_2%3a1.1.1-1_amd64.deb ... 502s Unpacking libice6:amd64 (2:1.1.1-1) ... 502s Selecting previously unselected package libicu-dev:amd64. 502s Preparing to unpack .../067-libicu-dev_76.1-1ubuntu2_amd64.deb ... 502s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ... 503s Selecting previously unselected package libjpeg-turbo8:amd64. 503s Preparing to unpack .../068-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 503s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 503s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 503s Preparing to unpack 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package libjs-jquery-datatables. 503s Preparing to unpack .../080-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 503s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 503s Selecting previously unselected package libjs-sifter.js. 503s Preparing to unpack .../081-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 503s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 503s Selecting previously unselected package libjs-microplugin.js. 503s Preparing to unpack .../082-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 503s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 503s Selecting previously unselected package libjs-jquery-selectize.js. 503s Preparing to unpack .../083-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 503s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 503s Selecting previously unselected package libjs-jquery-ui. 503s Preparing to unpack .../084-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 503s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 503s Selecting 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unpack .../090-liblua5.4-0_5.4.7-1_amd64.deb ... 503s Unpacking liblua5.4-0:amd64 (5.4.7-1) ... 503s Selecting previously unselected package libncurses-dev:amd64. 504s Preparing to unpack .../091-libncurses-dev_6.5-2_amd64.deb ... 504s Unpacking libncurses-dev:amd64 (6.5-2) ... 504s Selecting previously unselected package libthai-data. 504s Preparing to unpack .../092-libthai-data_0.1.29-2build1_all.deb ... 504s Unpacking libthai-data (0.1.29-2build1) ... 504s Selecting previously unselected package libthai0:amd64. 504s Preparing to unpack .../093-libthai0_0.1.29-2build1_amd64.deb ... 504s Unpacking libthai0:amd64 (0.1.29-2build1) ... 504s Selecting previously unselected package libpango-1.0-0:amd64. 504s Preparing to unpack .../094-libpango-1.0-0_1.56.0-3_amd64.deb ... 504s Unpacking libpango-1.0-0:amd64 (1.56.0-3) ... 504s Selecting previously unselected package libpangoft2-1.0-0:amd64. 504s Preparing to unpack .../095-libpangoft2-1.0-0_1.56.0-3_amd64.deb ... 504s Unpacking 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Selecting previously unselected package libpcre2-posix3:amd64. 504s Preparing to unpack .../101-libpcre2-posix3_10.42-4ubuntu3_amd64.deb ... 504s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu3) ... 504s Selecting previously unselected package libpcre2-dev:amd64. 504s Preparing to unpack .../102-libpcre2-dev_10.42-4ubuntu3_amd64.deb ... 504s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu3) ... 504s Selecting previously unselected package libpkgconf3:amd64. 504s Preparing to unpack .../103-libpkgconf3_1.8.1-4_amd64.deb ... 504s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 504s Selecting previously unselected package zlib1g-dev:amd64. 504s Preparing to unpack .../104-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 504s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 504s Selecting previously unselected package libpng-dev:amd64. 504s Preparing to unpack .../105-libpng-dev_1.6.45-1_amd64.deb ... 504s Unpacking libpng-dev:amd64 (1.6.45-1) ... 504s Selecting previously 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littler (0.3.20-2) ... 505s Selecting previously unselected package node-bootstrap-sass. 505s Preparing to unpack .../123-node-bootstrap-sass_3.4.3-2_all.deb ... 505s Unpacking node-bootstrap-sass (3.4.3-2) ... 505s Selecting previously unselected package node-html5shiv. 505s Preparing to unpack .../124-node-html5shiv_3.7.3+dfsg-5_all.deb ... 505s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 505s Selecting previously unselected package node-normalize.css. 505s Preparing to unpack .../125-node-normalize.css_8.0.1-5_all.deb ... 505s Unpacking node-normalize.css (8.0.1-5) ... 505s Selecting previously unselected package pandoc-data. 505s Preparing to unpack .../126-pandoc-data_3.1.11.1-3build1_all.deb ... 505s Unpacking pandoc-data (3.1.11.1-3build1) ... 505s Selecting previously unselected package pandoc. 505s Preparing to unpack .../127-pandoc_3.1.11.1+ds-2_amd64.deb ... 505s Unpacking pandoc (3.1.11.1+ds-2) ... 506s Selecting previously unselected package liblzma-dev:amd64. 506s 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Unpacking r-cran-bh (1.84.0-1) ... 506s Selecting previously unselected package r-cran-cpp11. 506s Preparing to unpack .../145-r-cran-cpp11_0.5.0-1_all.deb ... 506s Unpacking r-cran-cpp11 (0.5.0-1) ... 506s Selecting previously unselected package r-bioc-biocparallel. 506s Preparing to unpack .../146-r-bioc-biocparallel_1.40.0-2_amd64.deb ... 506s Unpacking r-bioc-biocparallel (1.40.0-2) ... 506s Selecting previously unselected package r-bioc-iranges. 506s Preparing to unpack .../147-r-bioc-iranges_2.40.1-2_amd64.deb ... 506s Unpacking r-bioc-iranges (2.40.1-2) ... 506s Selecting previously unselected package r-bioc-zlibbioc. 506s Preparing to unpack .../148-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 506s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 506s Selecting previously unselected package r-bioc-xvector. 506s Preparing to unpack .../149-r-bioc-xvector_0.46.0-2_amd64.deb ... 506s Unpacking r-bioc-xvector (0.46.0-2) ... 506s Selecting previously unselected package r-cran-curl. 506s 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to unpack .../161-r-cran-crayon_1.5.2-1_all.deb ... 507s Unpacking r-cran-crayon (1.5.2-1) ... 507s Selecting previously unselected package r-bioc-biostrings. 507s Preparing to unpack .../162-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 507s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 507s Selecting previously unselected package r-cran-lattice. 507s Preparing to unpack .../163-r-cran-lattice_0.22-6-1_amd64.deb ... 507s Unpacking r-cran-lattice (0.22-6-1) ... 507s Selecting previously unselected package r-cran-matrix. 507s Preparing to unpack .../164-r-cran-matrix_1.7-1-1_amd64.deb ... 507s Unpacking r-cran-matrix (1.7-1-1) ... 507s Selecting previously unselected package r-cran-matrixstats. 507s Preparing to unpack .../165-r-cran-matrixstats_1.4.1-1_amd64.deb ... 507s Unpacking r-cran-matrixstats (1.4.1-1) ... 507s Selecting previously unselected package r-bioc-matrixgenerics. 507s Preparing to unpack .../166-r-bioc-matrixgenerics_1.18.0-2_all.deb ... 507s Unpacking r-bioc-matrixgenerics (1.18.0-2) ... 507s Selecting previously unselected package r-cran-abind. 507s Preparing to unpack .../167-r-cran-abind_1.4-8-1_all.deb ... 507s Unpacking r-cran-abind (1.4-8-1) ... 507s Selecting previously unselected package r-bioc-s4arrays. 507s Preparing to unpack .../168-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ... 507s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 507s Selecting previously unselected package r-bioc-sparsearray. 507s Preparing to unpack .../169-r-bioc-sparsearray_1.6.0+dfsg-2_amd64.deb ... 507s Unpacking r-bioc-sparsearray (1.6.0+dfsg-2) ... 507s Selecting previously unselected package r-bioc-delayedarray. 507s Preparing to unpack .../170-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ... 507s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 507s Selecting previously unselected package r-bioc-genomicranges. 507s Preparing to unpack .../171-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ... 507s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 507s Selecting previously unselected package r-bioc-summarizedexperiment. 507s Preparing to unpack .../172-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 507s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 507s Selecting previously unselected package r-cran-locfit. 507s Preparing to unpack .../173-r-cran-locfit_1.5-9.10-1_amd64.deb ... 507s Unpacking r-cran-locfit (1.5-9.10-1) ... 507s Selecting previously unselected package r-cran-cli. 507s Preparing to unpack .../174-r-cran-cli_3.6.3-1_amd64.deb ... 507s Unpacking r-cran-cli (3.6.3-1) ... 507s Selecting previously unselected package r-cran-glue. 507s Preparing to unpack .../175-r-cran-glue_1.8.0-1_amd64.deb ... 507s Unpacking r-cran-glue (1.8.0-1) ... 507s Selecting previously unselected package r-cran-rlang. 507s Preparing to unpack .../176-r-cran-rlang_1.1.4-1_amd64.deb ... 507s Unpacking r-cran-rlang (1.1.4-1) ... 507s Selecting previously unselected package r-cran-lifecycle. 507s Preparing to unpack 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package r-cran-farver. 508s Preparing to unpack .../183-r-cran-farver_2.1.2-1_amd64.deb ... 508s Unpacking r-cran-farver (2.1.2-1) ... 508s Selecting previously unselected package r-cran-labeling. 508s Preparing to unpack .../184-r-cran-labeling_0.4.3-1_all.deb ... 508s Unpacking r-cran-labeling (0.4.3-1) ... 508s Selecting previously unselected package r-cran-colorspace. 508s Preparing to unpack .../185-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ... 508s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 508s Selecting previously unselected package r-cran-munsell. 508s Preparing to unpack .../186-r-cran-munsell_0.5.1-1_all.deb ... 508s Unpacking r-cran-munsell (0.5.1-1) ... 508s Selecting previously unselected package r-cran-rcolorbrewer. 508s Preparing to unpack .../187-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 508s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 508s Selecting previously unselected package r-cran-viridislite. 508s Preparing to unpack .../188-r-cran-viridislite_0.4.2-2_all.deb ... 508s Unpacking r-cran-viridislite (0.4.2-2) ... 508s Selecting previously unselected package r-cran-scales. 508s Preparing to unpack .../189-r-cran-scales_1.3.0-1_all.deb ... 508s Unpacking r-cran-scales (1.3.0-1) ... 508s Selecting previously unselected package r-cran-fansi. 508s Preparing to unpack .../190-r-cran-fansi_1.0.5-1_amd64.deb ... 508s Unpacking r-cran-fansi (1.0.5-1) ... 508s Selecting previously unselected package r-cran-magrittr. 508s Preparing to unpack .../191-r-cran-magrittr_2.0.3-1_amd64.deb ... 508s Unpacking r-cran-magrittr (2.0.3-1) ... 508s Selecting previously unselected package r-cran-utf8. 508s Preparing to unpack .../192-r-cran-utf8_1.2.4-1_amd64.deb ... 508s Unpacking r-cran-utf8 (1.2.4-1) ... 508s Selecting previously unselected package r-cran-vctrs. 508s Preparing to unpack .../193-r-cran-vctrs_0.6.5-1_amd64.deb ... 508s Unpacking r-cran-vctrs (0.6.5-1) ... 508s Selecting previously unselected package r-cran-pillar. 508s Preparing to unpack .../194-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 508s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 508s Selecting previously unselected package r-cran-pkgconfig. 508s Preparing to unpack .../195-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 508s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 508s Selecting previously unselected package r-cran-tibble. 508s Preparing to unpack .../196-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 508s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 508s Selecting previously unselected package r-cran-withr. 508s Preparing to unpack .../197-r-cran-withr_3.0.2+dfsg-1_all.deb ... 508s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 508s Selecting previously unselected package r-cran-ggplot2. 508s Preparing to unpack .../198-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 508s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 508s Selecting previously unselected package r-cran-pkgkitten. 508s Preparing to unpack .../199-r-cran-pkgkitten_0.2.4-1_all.deb ... 508s Unpacking r-cran-pkgkitten (0.2.4-1) ... 508s Selecting previously unselected package r-cran-rcpp. 508s Preparing to unpack .../200-r-cran-rcpp_1.0.14-1_amd64.deb ... 508s Unpacking r-cran-rcpp (1.0.14-1) ... 509s Selecting previously unselected package r-cran-rcpparmadillo. 509s Preparing to unpack .../201-r-cran-rcpparmadillo_14.2.2-1-1_amd64.deb ... 509s Unpacking r-cran-rcpparmadillo (14.2.2-1-1) ... 509s Selecting previously unselected package r-bioc-deseq2. 509s Preparing to unpack .../202-r-bioc-deseq2_1.46.0+dfsg-2_amd64.deb ... 509s Unpacking r-bioc-deseq2 (1.46.0+dfsg-2) ... 509s Selecting previously unselected package r-cran-bitops. 509s Preparing to unpack .../203-r-cran-bitops_1.0-8-1_amd64.deb ... 509s Unpacking r-cran-bitops (1.0-8-1) ... 509s Selecting previously unselected package r-bioc-rhtslib. 509s Preparing to unpack .../204-r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb ... 509s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 509s Selecting previously unselected package r-bioc-rsamtools. 509s Preparing to unpack .../205-r-bioc-rsamtools_2.22.0+dfsg-2_amd64.deb ... 509s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 509s Selecting previously unselected package r-bioc-genomicalignments. 509s Preparing to unpack .../206-r-bioc-genomicalignments_1.42.0-2_amd64.deb ... 509s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 509s Selecting previously unselected package r-cran-statmod. 509s Preparing to unpack .../207-r-cran-statmod_1.5.0-1_amd64.deb ... 509s Unpacking r-cran-statmod (1.5.0-1) ... 509s Selecting previously unselected package r-bioc-limma. 509s Preparing to unpack .../208-r-bioc-limma_3.62.2+dfsg-1_amd64.deb ... 509s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 509s Selecting previously unselected package r-cran-survival. 509s Preparing to unpack .../209-r-cran-survival_3.8-3-1_amd64.deb ... 509s Unpacking r-cran-survival (3.8-3-1) ... 509s Selecting previously unselected package r-bioc-multtest. 509s Preparing to unpack .../210-r-bioc-multtest_2.62.0-2_amd64.deb ... 509s Unpacking r-bioc-multtest (2.62.0-2) ... 509s Selecting previously unselected package r-cran-xml. 509s Preparing to unpack .../211-r-cran-xml_3.99-0.18-1_amd64.deb ... 509s Unpacking r-cran-xml (3.99-0.18-1) ... 509s Selecting previously unselected package r-cran-rcurl. 509s Preparing to unpack .../212-r-cran-rcurl_1.98-1.16+dfsg-1_amd64.deb ... 509s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 509s Selecting previously unselected package r-cran-rjson. 509s Preparing to unpack .../213-r-cran-rjson_0.2.23-1_amd64.deb ... 509s Unpacking r-cran-rjson (0.2.23-1) ... 509s Selecting previously unselected package r-cran-yaml. 509s Preparing to unpack .../214-r-cran-yaml_2.3.10-1_amd64.deb ... 509s Unpacking r-cran-yaml (2.3.10-1) ... 509s Selecting previously unselected package r-cran-restfulr. 509s Preparing to unpack .../215-r-cran-restfulr_0.0.15-1_amd64.deb ... 509s Unpacking r-cran-restfulr (0.0.15-1) ... 509s Selecting previously unselected package r-bioc-rtracklayer. 509s Preparing to unpack .../216-r-bioc-rtracklayer_1.66.0-2_amd64.deb ... 509s Unpacking r-bioc-rtracklayer (1.66.0-2) ... 509s Selecting previously unselected package r-cran-digest. 509s Preparing to unpack .../217-r-cran-digest_0.6.37-1_amd64.deb ... 509s Unpacking r-cran-digest (0.6.37-1) ... 509s Selecting previously unselected package r-cran-ape. 509s Preparing to unpack .../218-r-cran-ape_5.8-1_amd64.deb ... 509s Unpacking r-cran-ape (5.8-1) ... 510s Selecting previously unselected package r-cran-base64enc. 510s Preparing to unpack .../219-r-cran-base64enc_0.1-3-3_amd64.deb ... 510s Unpacking r-cran-base64enc (0.1-3-3) ... 510s Selecting previously unselected package r-cran-brio. 510s Preparing to unpack .../220-r-cran-brio_1.1.5-1_amd64.deb ... 510s Unpacking r-cran-brio (1.1.5-1) ... 510s Selecting previously unselected package r-cran-fastmap. 510s Preparing to unpack .../221-r-cran-fastmap_1.2.0-1_amd64.deb ... 510s Unpacking r-cran-fastmap (1.2.0-1) ... 510s Selecting previously unselected package r-cran-cachem. 510s Preparing to unpack .../222-r-cran-cachem_1.1.0-1_amd64.deb ... 510s Unpacking r-cran-cachem (1.1.0-1) ... 510s Selecting previously unselected package r-cran-htmltools. 510s Preparing to unpack .../223-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 510s Unpacking r-cran-htmltools (0.5.8.1-1) ... 510s Selecting previously unselected package r-cran-jquerylib. 510s Preparing to unpack .../224-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 510s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 510s Selecting previously unselected package r-cran-memoise. 510s Preparing to unpack .../225-r-cran-memoise_2.0.1-1_all.deb ... 510s Unpacking r-cran-memoise (2.0.1-1) ... 510s Selecting previously unselected package r-cran-fs. 510s Preparing to unpack .../226-r-cran-fs_1.6.4+dfsg-1_amd64.deb ... 510s Unpacking r-cran-fs (1.6.4+dfsg-1) ... 510s Selecting previously unselected package r-cran-rappdirs. 510s Preparing to unpack .../227-r-cran-rappdirs_0.3.3-1_amd64.deb ... 510s Unpacking r-cran-rappdirs (0.3.3-1) ... 510s Selecting previously unselected package r-cran-sass. 510s Preparing to unpack .../228-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 510s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 510s Selecting previously unselected package r-cran-bslib. 510s Preparing to unpack .../229-r-cran-bslib_0.7.0+dfsg-1_all.deb ... 510s Unpacking r-cran-bslib (0.7.0+dfsg-1) ... 510s Selecting previously unselected package r-cran-ps. 510s Preparing to unpack .../230-r-cran-ps_1.8.0-1_amd64.deb ... 510s Unpacking r-cran-ps (1.8.0-1) ... 510s Selecting previously unselected package r-cran-processx. 510s Preparing to unpack .../231-r-cran-processx_3.8.4-1_amd64.deb ... 510s Unpacking r-cran-processx (3.8.4-1) ... 510s Selecting previously unselected package r-cran-callr. 510s Preparing to unpack .../232-r-cran-callr_3.7.6-1_all.deb ... 510s Unpacking r-cran-callr (3.7.6-1) ... 510s Selecting previously unselected package r-cran-class. 510s Preparing to unpack .../233-r-cran-class_7.3-23-1_amd64.deb ... 510s Unpacking r-cran-class (7.3-23-1) ... 510s Selecting previously unselected package r-cran-proxy. 510s Preparing to unpack .../234-r-cran-proxy_0.4-27-1_amd64.deb ... 510s Unpacking r-cran-proxy (0.4-27-1) ... 510s Selecting previously unselected package r-cran-e1071. 510s Preparing to unpack .../235-r-cran-e1071_1.7-16-1_amd64.deb ... 510s Unpacking r-cran-e1071 (1.7-16-1) ... 510s Selecting previously unselected package r-cran-iterators. 510s Preparing to unpack .../236-r-cran-iterators_1.0.14-1_all.deb ... 510s Unpacking r-cran-iterators (1.0.14-1) ... 510s Selecting previously unselected package r-cran-foreach. 510s Preparing to unpack .../237-r-cran-foreach_1.5.2-1_all.deb ... 510s Unpacking r-cran-foreach (1.5.2-1) ... 510s Selecting previously unselected package r-cran-data.table. 510s Preparing to unpack .../238-r-cran-data.table_1.16.4+dfsg-1_amd64.deb ... 510s Unpacking r-cran-data.table (1.16.4+dfsg-1) ... 510s Selecting previously unselected package r-cran-modelmetrics. 510s Preparing to unpack .../239-r-cran-modelmetrics_1.2.2.2-1build1_amd64.deb ... 510s Unpacking r-cran-modelmetrics (1.2.2.2-1build1) ... 510s Selecting previously unselected package r-cran-plyr. 510s Preparing to unpack .../240-r-cran-plyr_1.8.9-1_amd64.deb ... 510s Unpacking r-cran-plyr (1.8.9-1) ... 510s Selecting previously unselected package r-cran-proc. 510s Preparing to unpack .../241-r-cran-proc_1.18.5-1_amd64.deb ... 510s Unpacking r-cran-proc (1.18.5-1) ... 510s Selecting previously unselected package r-cran-generics. 510s Preparing to unpack .../242-r-cran-generics_0.1.3-1_all.deb ... 510s Unpacking r-cran-generics (0.1.3-1) ... 510s Selecting previously unselected package r-cran-tidyselect. 510s Preparing to unpack .../243-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 510s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 510s Selecting previously unselected package r-cran-dplyr. 510s Preparing to unpack .../244-r-cran-dplyr_1.1.4-4_amd64.deb ... 510s Unpacking r-cran-dplyr (1.1.4-4) ... 511s Selecting previously unselected package r-cran-tzdb. 511s Preparing to unpack .../245-r-cran-tzdb_0.4.0-2_amd64.deb ... 511s Unpacking r-cran-tzdb (0.4.0-2) ... 511s Selecting previously unselected package r-cran-clock. 511s Preparing to unpack .../246-r-cran-clock_0.7.1-1_amd64.deb ... 511s Unpacking r-cran-clock (0.7.1-1) ... 511s Selecting previously unselected package r-cran-gower. 511s Preparing to unpack .../247-r-cran-gower_1.0.1-1_amd64.deb ... 511s Unpacking r-cran-gower (1.0.1-1) ... 511s Selecting previously unselected package r-cran-hardhat. 511s Preparing to unpack .../248-r-cran-hardhat_1.4.0+dfsg-1_all.deb ... 511s Unpacking r-cran-hardhat (1.4.0+dfsg-1) ... 511s Selecting previously unselected package r-cran-rpart. 511s Preparing to unpack .../249-r-cran-rpart_4.1.24-1_amd64.deb ... 511s Unpacking r-cran-rpart (4.1.24-1) ... 511s Selecting previously unselected package r-cran-nnet. 511s Preparing to unpack .../250-r-cran-nnet_7.3-20-1_amd64.deb ... 511s Unpacking r-cran-nnet (7.3-20-1) ... 511s Selecting previously unselected package r-cran-shape. 511s Preparing to unpack .../251-r-cran-shape_1.4.6.1-1_all.deb ... 511s Unpacking r-cran-shape (1.4.6.1-1) ... 511s Selecting previously unselected package r-cran-diagram. 511s Preparing to unpack .../252-r-cran-diagram_1.6.5-2_all.deb ... 511s Unpacking r-cran-diagram (1.6.5-2) ... 511s Selecting previously unselected package r-cran-kernsmooth. 511s Preparing to unpack .../253-r-cran-kernsmooth_2.23-26-1_amd64.deb ... 511s Unpacking r-cran-kernsmooth (2.23-26-1) ... 511s Selecting previously unselected package r-cran-globals. 511s Preparing to unpack .../254-r-cran-globals_0.16.3-1_all.deb ... 511s Unpacking r-cran-globals (0.16.3-1) ... 511s Selecting previously unselected package r-cran-listenv. 511s Preparing to unpack .../255-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 511s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 511s Selecting previously unselected package r-cran-parallelly. 511s Preparing to unpack .../256-r-cran-parallelly_1.38.0-1_amd64.deb ... 511s Unpacking r-cran-parallelly (1.38.0-1) ... 511s Selecting previously unselected package r-cran-future. 511s Preparing to unpack .../257-r-cran-future_1.34.0+dfsg-1_all.deb ... 511s Unpacking r-cran-future (1.34.0+dfsg-1) ... 511s Selecting previously unselected package r-cran-future.apply. 511s Preparing to unpack .../258-r-cran-future.apply_1.11.2+dfsg-1_all.deb ... 511s Unpacking r-cran-future.apply (1.11.2+dfsg-1) ... 511s Selecting previously unselected package r-cran-numderiv. 511s Preparing to unpack .../259-r-cran-numderiv_2016.8-1.1-3_all.deb ... 511s Unpacking r-cran-numderiv (2016.8-1.1-3) ... 511s Selecting previously unselected package r-cran-progressr. 511s Preparing to unpack .../260-r-cran-progressr_0.14.0-1_all.deb ... 511s Unpacking r-cran-progressr (0.14.0-1) ... 511s Selecting previously unselected package r-cran-squarem. 511s Preparing to unpack .../261-r-cran-squarem_2021.1-1_all.deb ... 511s Unpacking r-cran-squarem (2021.1-1) ... 511s Selecting previously unselected package r-cran-lava. 511s Preparing to unpack .../262-r-cran-lava_1.7.3+dfsg-1_all.deb ... 511s Unpacking r-cran-lava (1.7.3+dfsg-1) ... 511s Selecting previously unselected package r-cran-prodlim. 511s Preparing to unpack .../263-r-cran-prodlim_2024.06.25-1_amd64.deb ... 511s Unpacking r-cran-prodlim (2024.06.25-1) ... 511s Selecting previously unselected package r-cran-ipred. 511s Preparing to unpack .../264-r-cran-ipred_0.9-15-1_amd64.deb ... 511s Unpacking r-cran-ipred (0.9-15-1) ... 511s Selecting previously unselected package r-cran-timechange. 511s Preparing to unpack .../265-r-cran-timechange_0.3.0-1_amd64.deb ... 511s Unpacking r-cran-timechange (0.3.0-1) ... 511s Selecting previously unselected package r-cran-lubridate. 511s Preparing to unpack .../266-r-cran-lubridate_1.9.3+dfsg-1_amd64.deb ... 511s Unpacking r-cran-lubridate (1.9.3+dfsg-1) ... 511s Selecting previously unselected package r-cran-purrr. 511s Preparing to unpack .../267-r-cran-purrr_1.0.2-1_amd64.deb ... 511s Unpacking r-cran-purrr (1.0.2-1) ... 511s Selecting previously unselected package r-cran-stringi. 511s Preparing to unpack .../268-r-cran-stringi_1.8.4-1build1_amd64.deb ... 511s Unpacking r-cran-stringi (1.8.4-1build1) ... 511s Selecting previously unselected package r-cran-stringr. 511s Preparing to unpack .../269-r-cran-stringr_1.5.1-1_all.deb ... 511s Unpacking r-cran-stringr (1.5.1-1) ... 511s Selecting previously unselected package r-cran-tidyr. 511s Preparing to unpack .../270-r-cran-tidyr_1.3.1-1_amd64.deb ... 511s Unpacking r-cran-tidyr (1.3.1-1) ... 511s Selecting previously unselected package r-cran-timedate. 511s Preparing to unpack .../271-r-cran-timedate_4041.110-1_amd64.deb ... 511s Unpacking r-cran-timedate (4041.110-1) ... 511s Selecting previously unselected package r-cran-recipes. 511s Preparing to unpack .../272-r-cran-recipes_1.1.0+dfsg-1_all.deb ... 511s Unpacking r-cran-recipes (1.1.0+dfsg-1) ... 512s Selecting previously unselected package r-cran-reshape2. 512s Preparing to unpack .../273-r-cran-reshape2_1.4.4-2build1_amd64.deb ... 512s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 512s Selecting previously unselected package r-cran-caret. 512s Preparing to unpack .../274-r-cran-caret_6.0-94+dfsg-1_amd64.deb ... 512s Unpacking r-cran-caret (6.0-94+dfsg-1) ... 512s Selecting previously unselected package r-cran-catools. 512s Preparing to unpack .../275-r-cran-catools_1.18.2-1_amd64.deb ... 512s Unpacking r-cran-catools (1.18.2-1) ... 512s Selecting previously unselected package r-cran-cluster. 512s Preparing to unpack .../276-r-cran-cluster_2.1.8-1_amd64.deb ... 512s Unpacking r-cran-cluster (2.1.8-1) ... 512s Selecting previously unselected package r-cran-evaluate. 512s Preparing to unpack .../277-r-cran-evaluate_1.0.0-1_all.deb ... 512s Unpacking r-cran-evaluate (1.0.0-1) ... 512s Selecting previously unselected package r-cran-xfun. 512s Preparing to unpack .../278-r-cran-xfun_0.49+dfsg-1_amd64.deb ... 512s Unpacking r-cran-xfun (0.49+dfsg-1) ... 512s Selecting previously unselected package r-cran-highr. 512s Preparing to unpack .../279-r-cran-highr_0.11+dfsg-1_all.deb ... 512s Unpacking r-cran-highr (0.11+dfsg-1) ... 512s Selecting previously unselected package libjs-mathjax. 512s Preparing to unpack .../280-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 512s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 512s Selecting previously unselected package r-cran-knitr. 512s Preparing to unpack .../281-r-cran-knitr_1.49+dfsg-1_all.deb ... 512s Unpacking r-cran-knitr (1.49+dfsg-1) ... 512s Selecting previously unselected package r-cran-fontawesome. 512s Preparing to unpack .../282-r-cran-fontawesome_0.5.2-1_all.deb ... 512s Unpacking r-cran-fontawesome (0.5.2-1) ... 512s Selecting previously unselected package r-cran-tinytex. 512s Preparing to unpack .../283-r-cran-tinytex_0.53-1_all.deb ... 512s Unpacking r-cran-tinytex (0.53-1) ... 513s Selecting previously unselected package libjs-modernizr. 513s Preparing to unpack .../284-libjs-modernizr_3.13.0-0.1_all.deb ... 513s Unpacking libjs-modernizr (3.13.0-0.1) ... 513s Selecting previously unselected package r-cran-later. 513s Preparing to unpack .../285-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 513s Unpacking r-cran-later (1.3.2+dfsg-1) ... 513s Selecting previously unselected package r-cran-promises. 513s Preparing to unpack .../286-r-cran-promises_1.3.0+dfsg-1_amd64.deb ... 513s Unpacking r-cran-promises (1.3.0+dfsg-1) ... 513s Selecting previously unselected package r-cran-httpuv. 513s Preparing to unpack .../287-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 513s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 513s Selecting previously unselected package r-cran-xtable. 513s Preparing to unpack .../288-r-cran-xtable_1%3a1.8-4-2_all.deb ... 513s Unpacking r-cran-xtable (1:1.8-4-2) ... 513s Selecting previously unselected package r-cran-sourcetools. 513s Preparing to unpack .../289-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 513s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 513s Selecting previously unselected package r-cran-commonmark. 513s Preparing to unpack .../290-r-cran-commonmark_1.9.2-2_amd64.deb ... 513s Unpacking r-cran-commonmark (1.9.2-2) ... 513s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 513s Preparing to unpack .../291-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 513s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 513s Selecting previously unselected package r-cran-shiny. 513s Preparing to unpack .../292-r-cran-shiny_1.9.1+dfsg-1_all.deb ... 513s Unpacking r-cran-shiny (1.9.1+dfsg-1) ... 513s Selecting previously unselected package r-cran-rmarkdown. 513s Preparing to unpack .../293-r-cran-rmarkdown_2.28+dfsg-1_all.deb ... 513s Unpacking r-cran-rmarkdown (2.28+dfsg-1) ... 513s Selecting previously unselected package r-cran-htmlwidgets. 513s Preparing to unpack .../294-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 513s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 513s Selecting previously unselected package r-cran-miniui. 513s Preparing to unpack .../295-r-cran-miniui_0.1.1.1-3build1_all.deb ... 513s Unpacking r-cran-miniui (0.1.1.1-3build1) ... 513s Selecting previously unselected package r-cran-shinyjs. 513s Preparing to unpack .../296-r-cran-shinyjs_2.1.0-1_all.deb ... 513s Unpacking r-cran-shinyjs (2.1.0-1) ... 513s Selecting previously unselected package r-cran-colourpicker. 513s Preparing to unpack .../297-r-cran-colourpicker_1.3.0+dfsg-1_all.deb ... 513s Unpacking r-cran-colourpicker (1.3.0+dfsg-1) ... 513s Selecting previously unselected package r-cran-conquer. 513s Preparing to unpack .../298-r-cran-conquer_1.3.3-1_amd64.deb ... 513s Unpacking r-cran-conquer (1.3.3-1) ... 513s Selecting previously unselected package r-cran-cowplot. 513s Preparing to unpack .../299-r-cran-cowplot_1.1.3+dfsg-1_all.deb ... 513s Unpacking r-cran-cowplot (1.1.3+dfsg-1) ... 513s Selecting previously unselected package r-cran-lazyeval. 513s Preparing to unpack .../300-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 513s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 513s Selecting previously unselected package r-cran-crosstalk. 513s Preparing to unpack .../301-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 513s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 513s Selecting previously unselected package r-cran-deldir. 513s Preparing to unpack .../302-r-cran-deldir_2.0-4-1build1_amd64.deb ... 513s Unpacking r-cran-deldir (2.0-4-1build1) ... 513s Selecting previously unselected package r-cran-deoptimr. 513s Preparing to unpack .../303-r-cran-deoptimr_1.1-3-1-1_all.deb ... 513s Unpacking r-cran-deoptimr (1.1-3-1-1) ... 513s Selecting previously unselected package r-cran-desc. 514s Preparing to unpack .../304-r-cran-desc_1.4.3-1_all.deb ... 514s Unpacking r-cran-desc (1.4.3-1) ... 514s Selecting previously unselected package r-cran-diffobj. 514s Preparing to unpack .../305-r-cran-diffobj_0.3.5-1_amd64.deb ... 514s Unpacking r-cran-diffobj (0.3.5-1) ... 514s Selecting previously unselected package r-cran-dotcall64. 514s Preparing to unpack .../306-r-cran-dotcall64_1.1-1-1_amd64.deb ... 514s Unpacking r-cran-dotcall64 (1.1-1-1) ... 514s Selecting previously unselected package r-cran-sitmo. 514s Preparing to unpack .../307-r-cran-sitmo_2.0.2-1_amd64.deb ... 514s Unpacking r-cran-sitmo (2.0.2-1) ... 514s Selecting previously unselected package r-cran-dqrng. 514s Preparing to unpack .../308-r-cran-dqrng_0.3.2+dfsg-1_amd64.deb ... 514s Unpacking r-cran-dqrng (0.3.2+dfsg-1) ... 514s Selecting previously unselected package r-cran-fastdummies. 514s Preparing to unpack .../309-r-cran-fastdummies_1.7.4-1_all.deb ... 514s Unpacking r-cran-fastdummies (1.7.4-1) ... 514s Selecting previously unselected package r-cran-fitdistrplus. 514s Preparing to unpack .../310-r-cran-fitdistrplus_1.2-1-1_all.deb ... 514s Unpacking r-cran-fitdistrplus (1.2-1-1) ... 514s Selecting previously unselected package r-cran-fnn. 514s Preparing to unpack .../311-r-cran-fnn_1.1.4.1-1_amd64.deb ... 514s Unpacking r-cran-fnn (1.1.4.1-1) ... 514s Selecting previously unselected package r-cran-gtools. 514s Preparing to unpack .../312-r-cran-gtools_3.9.5-1_amd64.deb ... 514s Unpacking r-cran-gtools (3.9.5-1) ... 514s Selecting previously unselected package r-cran-gdata. 514s Preparing to unpack .../313-r-cran-gdata_3.0.1-1_all.deb ... 514s Unpacking r-cran-gdata (3.0.1-1) ... 514s Selecting previously unselected package r-cran-ggrepel. 514s Preparing to unpack .../314-r-cran-ggrepel_0.9.5-2_amd64.deb ... 514s Unpacking r-cran-ggrepel (0.9.5-2) ... 514s Selecting previously unselected package r-cran-ggridges. 514s Preparing to unpack .../315-r-cran-ggridges_0.5.6-1_all.deb ... 514s Unpacking r-cran-ggridges (0.5.6-1) ... 514s Selecting previously unselected package r-cran-goftest. 514s Preparing to unpack .../316-r-cran-goftest_1.2-3-1_amd64.deb ... 514s Unpacking r-cran-goftest (1.2-3-1) ... 514s Selecting previously unselected package r-cran-gplots. 514s Preparing to unpack .../317-r-cran-gplots_3.2.0-1_all.deb ... 514s Unpacking r-cran-gplots (3.2.0-1) ... 514s Selecting previously unselected package r-cran-gridextra. 514s Preparing to unpack .../318-r-cran-gridextra_2.3-3build1_all.deb ... 514s Unpacking r-cran-gridextra (2.3-3build1) ... 514s Selecting previously unselected package r-cran-rprojroot. 514s Preparing to unpack .../319-r-cran-rprojroot_2.0.4-1_all.deb ... 514s Unpacking r-cran-rprojroot (2.0.4-1) ... 514s Selecting previously unselected package r-cran-here. 514s Preparing to unpack .../320-r-cran-here_1.0.1-2_all.deb ... 514s Unpacking r-cran-here (1.0.1-2) ... 514s Selecting previously unselected package r-cran-ica. 514s Preparing to unpack .../321-r-cran-ica_1.0-3-1_all.deb ... 514s Unpacking r-cran-ica (1.0-3-1) ... 514s Selecting previously unselected package r-cran-igraph. 514s Preparing to unpack .../322-r-cran-igraph_2.0.3-1_amd64.deb ... 514s Unpacking r-cran-igraph (2.0.3-1) ... 514s Selecting previously unselected package r-cran-irlba. 514s Preparing to unpack .../323-r-cran-irlba_2.3.5.1-4_amd64.deb ... 514s Unpacking r-cran-irlba (2.3.5.1-4) ... 514s Selecting previously unselected package r-cran-kernlab. 514s Preparing to unpack .../324-r-cran-kernlab_0.9-33-1_amd64.deb ... 514s Unpacking r-cran-kernlab (0.9-33-1) ... 514s Selecting previously unselected package r-cran-rcpptoml. 514s Preparing to unpack .../325-r-cran-rcpptoml_0.2.2+dfsg-1_amd64.deb ... 514s Unpacking r-cran-rcpptoml (0.2.2+dfsg-1) ... 514s Selecting previously unselected package r-cran-png. 514s Preparing to unpack .../326-r-cran-png_0.1-8-1build2_amd64.deb ... 514s Unpacking r-cran-png (0.1-8-1build2) ... 514s Selecting previously unselected package r-cran-reticulate. 514s Preparing to unpack .../327-r-cran-reticulate_1.39.0+dfsg-1_amd64.deb ... 514s Unpacking r-cran-reticulate (1.39.0+dfsg-1) ... 515s Selecting previously unselected package r-cran-leiden. 515s Preparing to unpack .../328-r-cran-leiden_0.4.3.1+dfsg-1_all.deb ... 515s Unpacking r-cran-leiden (0.4.3.1+dfsg-1) ... 515s Selecting previously unselected package r-cran-zoo. 515s Preparing to unpack .../329-r-cran-zoo_1.8-12-2_amd64.deb ... 515s Unpacking r-cran-zoo (1.8-12-2) ... 515s Selecting previously unselected package r-cran-lmtest. 515s Preparing to unpack .../330-r-cran-lmtest_0.9.40-1_amd64.deb ... 515s Unpacking r-cran-lmtest (0.9.40-1) ... 515s Selecting previously unselected package r-cran-mathjaxr. 515s Preparing to unpack .../331-r-cran-mathjaxr_1.6-0-1_all.deb ... 515s Unpacking r-cran-mathjaxr (1.6-0-1) ... 515s Selecting previously unselected package r-cran-matrixmodels. 515s Preparing to unpack .../332-r-cran-matrixmodels_0.5-3-1_all.deb ... 515s Unpacking r-cran-matrixmodels (0.5-3-1) ... 515s Selecting previously unselected package r-cran-rbibutils. 515s Preparing to unpack .../333-r-cran-rbibutils_2.3-1_amd64.deb ... 515s Unpacking r-cran-rbibutils (2.3-1) ... 515s Selecting previously unselected package r-cran-rdpack. 515s Preparing to unpack .../334-r-cran-rdpack_2.6.2-1_all.deb ... 515s Unpacking r-cran-rdpack (2.6.2-1) ... 515s Selecting previously unselected package r-cran-mnormt. 515s Preparing to unpack .../335-r-cran-mnormt_2.1.1-2_amd64.deb ... 515s Unpacking r-cran-mnormt (2.1.1-2) ... 515s Selecting previously unselected package r-cran-sparsem. 515s Preparing to unpack .../336-r-cran-sparsem_1.84-2-1_amd64.deb ... 515s Unpacking r-cran-sparsem (1.84-2-1) ... 515s Selecting previously unselected package r-cran-quantreg. 515s Preparing to unpack .../337-r-cran-quantreg_5.99.1-1_amd64.deb ... 515s Unpacking r-cran-quantreg (5.99.1-1) ... 515s Selecting previously unselected package r-cran-sn. 515s Preparing to unpack .../338-r-cran-sn_2.1.1-2_all.deb ... 515s Unpacking r-cran-sn (2.1.1-2) ... 515s Selecting previously unselected package r-cran-mvtnorm. 515s Preparing to unpack .../339-r-cran-mvtnorm_1.3-3-1_amd64.deb ... 515s Unpacking r-cran-mvtnorm (1.3-3-1) ... 515s Selecting previously unselected package r-cran-tfisher. 515s Preparing to unpack .../340-r-cran-tfisher_0.2.0-3_all.deb ... 515s Unpacking r-cran-tfisher (0.2.0-3) ... 515s Selecting previously unselected package r-cran-plotrix. 515s Preparing to unpack .../341-r-cran-plotrix_3.8-4-1_all.deb ... 515s Unpacking r-cran-plotrix (3.8-4-1) ... 515s Selecting previously unselected package r-cran-th.data. 515s Preparing to unpack .../342-r-cran-th.data_1.1-2-2_all.deb ... 515s Unpacking r-cran-th.data (1.1-2-2) ... 515s Selecting previously unselected package r-cran-sandwich. 515s Preparing to unpack .../343-r-cran-sandwich_3.1-1-1_all.deb ... 515s Unpacking r-cran-sandwich (3.1-1-1) ... 515s Selecting previously unselected package r-cran-multcomp. 515s Preparing to unpack .../344-r-cran-multcomp_1.4-26-2_all.deb ... 515s Unpacking r-cran-multcomp (1.4-26-2) ... 515s Selecting previously unselected package r-cran-mutoss. 515s Preparing to unpack .../345-r-cran-mutoss_0.1-13-1_all.deb ... 515s Unpacking r-cran-mutoss (0.1-13-1) ... 515s Selecting previously unselected package r-cran-robustbase. 515s Preparing to unpack .../346-r-cran-robustbase_0.99-4-1-1_amd64.deb ... 515s Unpacking r-cran-robustbase (0.99-4-1-1) ... 515s Selecting previously unselected package r-cran-qqconf. 515s Preparing to unpack .../347-r-cran-qqconf_1.3.2+dfsg-1_amd64.deb ... 515s Unpacking r-cran-qqconf (1.3.2+dfsg-1) ... 515s Selecting previously unselected package r-cran-metap. 515s Preparing to unpack .../348-r-cran-metap_1.11-1_all.deb ... 515s Unpacking r-cran-metap (1.11-1) ... 515s Selecting previously unselected package r-cran-plotly. 515s Preparing to unpack .../349-r-cran-plotly_4.10.4+dfsg-2_all.deb ... 515s Unpacking r-cran-plotly (4.10.4+dfsg-2) ... 516s Selecting previously unselected package r-cran-segmented. 516s Preparing to unpack .../350-r-cran-segmented_2.1-3-1_all.deb ... 516s Unpacking r-cran-segmented (2.1-3-1) ... 516s Selecting previously unselected package r-cran-mixtools. 516s Preparing to unpack .../351-r-cran-mixtools_2.0.0-1_amd64.deb ... 516s Unpacking r-cran-mixtools (2.0.0-1) ... 516s Selecting previously unselected package r-cran-patchwork. 516s Preparing to unpack .../352-r-cran-patchwork_1.3.0-1_all.deb ... 516s Unpacking r-cran-patchwork (1.3.0-1) ... 516s Selecting previously unselected package r-cran-pbapply. 516s Preparing to unpack .../353-r-cran-pbapply_1.7-2-1_all.deb ... 516s Unpacking r-cran-pbapply (1.7-2-1) ... 516s Selecting previously unselected package r-cran-pkgbuild. 516s Preparing to unpack .../354-r-cran-pkgbuild_1.4.4-1_all.deb ... 516s Unpacking r-cran-pkgbuild (1.4.4-1) ... 516s Selecting previously unselected package r-cran-pkgload. 516s Preparing to unpack .../355-r-cran-pkgload_1.4.0-1_all.deb ... 516s Unpacking r-cran-pkgload (1.4.0-1) ... 516s Selecting previously unselected package r-cran-polyclip. 516s Preparing to unpack .../356-r-cran-polyclip_1.10-7-1_amd64.deb ... 516s Unpacking r-cran-polyclip (1.10-7-1) ... 516s Selecting previously unselected package r-cran-praise. 516s Preparing to unpack .../357-r-cran-praise_1.0.0-4build1_all.deb ... 516s Unpacking r-cran-praise (1.0.0-4build1) ... 516s Selecting previously unselected package r-cran-r.methodss3. 516s Preparing to unpack .../358-r-cran-r.methodss3_1.8.2-1_all.deb ... 516s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 516s Selecting previously unselected package r-cran-r.oo. 516s Preparing to unpack .../359-r-cran-r.oo_1.26.0-1_all.deb ... 516s Unpacking r-cran-r.oo (1.26.0-1) ... 516s Selecting previously unselected package r-cran-r.utils. 516s Preparing to unpack .../360-r-cran-r.utils_2.12.3-1_all.deb ... 516s Unpacking r-cran-r.utils (2.12.3-1) ... 516s Selecting previously unselected package r-cran-rann. 516s Preparing to unpack .../361-r-cran-rann_2.6.2-1_amd64.deb ... 516s Unpacking r-cran-rann (2.6.2-1) ... 516s Selecting previously unselected package r-cran-rcppannoy. 516s Preparing to unpack .../362-r-cran-rcppannoy_0.0.22-1_amd64.deb ... 516s Unpacking r-cran-rcppannoy (0.0.22-1) ... 516s Selecting previously unselected package r-cran-rcppeigen. 516s Preparing to unpack .../363-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 516s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 516s Selecting previously unselected package r-cran-rcpphnsw. 516s Preparing to unpack .../364-r-cran-rcpphnsw_0.5.0+ds-1_amd64.deb ... 516s Unpacking r-cran-rcpphnsw (0.5.0+ds-1) ... 516s Selecting previously unselected package r-cran-rcppprogress. 516s Preparing to unpack .../365-r-cran-rcppprogress_0.4.2-2build1_all.deb ... 516s Unpacking r-cran-rcppprogress (0.4.2-2build1) ... 516s Selecting previously unselected package r-cran-rocr. 516s Preparing to unpack .../366-r-cran-rocr_1.0-11-3_all.deb ... 516s Unpacking r-cran-rocr (1.0-11-3) ... 516s Selecting previously unselected package r-cran-rspectra. 516s Preparing to unpack .../367-r-cran-rspectra_0.16-2-1_amd64.deb ... 516s Unpacking r-cran-rspectra (0.16-2-1) ... 516s Selecting previously unselected package r-cran-rsvd. 516s Preparing to unpack .../368-r-cran-rsvd_1.0.5-1_all.deb ... 516s Unpacking r-cran-rsvd (1.0.5-1) ... 516s Selecting previously unselected package r-cran-rtsne. 516s Preparing to unpack .../369-r-cran-rtsne_0.17-1_amd64.deb ... 516s Unpacking r-cran-rtsne (0.17-1) ... 516s Selecting previously unselected package r-cran-scattermore. 517s Preparing to unpack .../370-r-cran-scattermore_1.2-1_amd64.deb ... 517s Unpacking r-cran-scattermore (1.2-1) ... 517s Selecting previously unselected package r-cran-sctransform. 517s Preparing to unpack .../371-r-cran-sctransform_0.4.1-1_amd64.deb ... 517s Unpacking r-cran-sctransform (0.4.1-1) ... 517s Selecting previously unselected package r-cran-sp. 517s Preparing to unpack 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r-cran-spatstat.geom (3.2-9-2) ... 517s Selecting previously unselected package r-cran-spatstat.random. 517s Preparing to unpack .../378-r-cran-spatstat.random_3.2-3-1_amd64.deb ... 517s Unpacking r-cran-spatstat.random (3.2-3-1) ... 517s Selecting previously unselected package r-cran-tensor. 517s Preparing to unpack .../379-r-cran-tensor_1.5-4_all.deb ... 517s Unpacking r-cran-tensor (1.5-4) ... 517s Selecting previously unselected package r-cran-spatstat.sparse. 517s Preparing to unpack .../380-r-cran-spatstat.sparse_3.0-3-1_amd64.deb ... 517s Unpacking r-cran-spatstat.sparse (3.0-3-1) ... 517s Selecting previously unselected package r-cran-spatstat.explore. 517s Preparing to unpack .../381-r-cran-spatstat.explore_3.2-7-1_amd64.deb ... 517s Unpacking r-cran-spatstat.explore (3.2-7-1) ... 517s Selecting previously unselected package r-cran-uwot. 517s Preparing to unpack .../382-r-cran-uwot_0.2.2-1_amd64.deb ... 517s Unpacking r-cran-uwot (0.2.2-1) ... 517s Selecting previously 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(1.0.2-1) ... 520s Setting up r-cran-e1071 (1.7-16-1) ... 520s Setting up r-cran-spatstat.data (3.1-2-1) ... 520s Setting up r-cran-fastdummies (1.7.4-1) ... 520s Setting up r-cran-multcomp (1.4-26-2) ... 520s Setting up r-cran-qqconf (1.3.2+dfsg-1) ... 520s Setting up r-cran-seuratobject (5.0.2-1) ... 520s Setting up r-cran-spatstat.geom (3.2-9-2) ... 520s Setting up r-bioc-xvector (0.46.0-2) ... 520s Setting up r-cran-pkgbuild (1.4.4-1) ... 520s Setting up r-cran-hardhat (1.4.0+dfsg-1) ... 520s Setting up r-cran-dplyr (1.1.4-4) ... 520s Setting up r-cran-rspectra (0.16-2-1) ... 520s Setting up r-cran-gplots (3.2.0-1) ... 520s Setting up r-cran-uwot (0.2.2-1) ... 520s Setting up r-cran-leiden (0.4.3.1+dfsg-1) ... 520s Setting up r-bioc-multtest (2.62.0-2) ... 520s Setting up r-cran-lubridate (1.9.3+dfsg-1) ... 520s Setting up r-cran-pkgload (1.4.0-1) ... 520s Setting up r-cran-r.utils (2.12.3-1) ... 520s Setting up r-cran-rocr (1.0-11-3) ... 520s Setting up r-base-dev (4.4.2-1build1) ... 520s Setting up r-cran-prodlim (2024.06.25-1) ... 520s Setting up r-cran-fitdistrplus (1.2-1-1) ... 520s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 520s Setting up r-bioc-sparsearray (1.6.0+dfsg-2) ... 520s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 520s Setting up r-cran-scattermore (1.2-1) ... 520s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 520s Setting up r-cran-rpart (4.1.24-1) ... 520s Setting up r-cran-spatstat.random (3.2-3-1) ... 520s Setting up r-cran-ipred (0.9-15-1) ... 520s Setting up r-cran-testthat (3.2.1.1-1) ... 520s Setting up r-bioc-genomeinfodb (1.42.1+dfsg-2) ... 520s Setting up r-cran-bslib (0.7.0+dfsg-1) ... 520s Setting up r-cran-spatstat.explore (3.2-7-1) ... 520s Setting up r-cran-ggrepel (0.9.5-2) ... 520s Setting up r-cran-tidyr (1.3.1-1) ... 520s Setting up r-cran-recipes (1.1.0+dfsg-1) ... 520s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 520s Setting up r-cran-mutoss (0.1-13-1) ... 520s Setting up r-cran-ggridges (0.5.6-1) ... 520s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 520s Setting up r-cran-cowplot (1.1.3+dfsg-1) ... 520s Setting up r-cran-sctransform (0.4.1-1) ... 520s Setting up r-cran-patchwork (1.3.0-1) ... 520s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 520s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 520s Setting up r-cran-caret (6.0-94+dfsg-1) ... 520s Setting up r-cran-shiny (1.9.1+dfsg-1) ... 520s Setting up r-cran-shinyjs (2.1.0-1) ... 520s Setting up r-cran-miniui (0.1.1.1-3build1) ... 520s Setting up r-cran-rmarkdown (2.28+dfsg-1) ... 520s Setting up r-cran-conquer (1.3.3-1) ... 520s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 520s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 520s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 520s Setting up r-cran-quantreg (5.99.1-1) ... 520s Setting up r-cran-sn (2.1.1-2) ... 520s Setting up r-bioc-deseq2 (1.46.0+dfsg-2) ... 520s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 520s Setting up r-cran-colourpicker (1.3.0+dfsg-1) ... 520s Setting up r-cran-tfisher (0.2.0-3) ... 520s Setting up r-bioc-genomicalignments (1.42.0-2) ... 520s Setting up r-cran-metap (1.11-1) ... 520s Setting up r-bioc-rtracklayer (1.66.0-2) ... 520s Setting up r-cran-plotly (4.10.4+dfsg-2) ... 520s Setting up r-cran-mixtools (2.0.0-1) ... 520s Setting up r-cran-seurat (5.1.0-1) ... 520s Processing triggers for man-db (2.13.0-1) ... 522s Processing triggers for install-info (7.1.1-1) ... 522s Processing triggers for libc-bin (2.40-4ubuntu1) ... 524s autopkgtest [13:25:59]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 524s autopkgtest [13:25:59]: test pkg-r-autopkgtest: [----------------------- 524s Test: Try to load the R library Seurat 524s 524s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 524s Copyright (C) 2024 The R Foundation for Statistical Computing 524s Platform: x86_64-pc-linux-gnu 524s 524s R is free software and comes with ABSOLUTELY NO WARRANTY. 524s You are welcome to redistribute it under certain conditions. 524s Type 'license()' or 'licence()' for distribution details. 524s 524s R is a collaborative project with many contributors. 524s Type 'contributors()' for more information and 524s 'citation()' on how to cite R or R packages in publications. 524s 524s Type 'demo()' for some demos, 'help()' for on-line help, or 524s 'help.start()' for an HTML browser interface to help. 524s Type 'q()' to quit R. 524s 524s > library('Seurat') 524s Loading required package: SeuratObject 524s Loading required package: sp 526s ‘SeuratObject’ was built under R 4.4.1 but the current version is 526s 4.4.2; it is recomended that you reinstall ‘SeuratObject’ as the ABI 526s for R may have changed 526s ‘SeuratObject’ was built with package ‘Matrix’ 1.7.0 but the current 526s version is 1.7.1; it is recomended that you reinstall ‘SeuratObject’ as 526s the ABI for ‘Matrix’ may have changed 526s 526s Attaching package: ‘SeuratObject’ 526s 526s The following objects are masked from ‘package:base’: 526s 526s intersect, t 526s 527s > 527s > 527s Other tests are currently unsupported! 527s They will be progressively added. 528s autopkgtest [13:26:03]: test pkg-r-autopkgtest: -----------------------] 528s autopkgtest [13:26:03]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 528s pkg-r-autopkgtest PASS 529s autopkgtest [13:26:04]: @@@@@@@@@@@@@@@@@@@@ summary 529s run-unit-test PASS 529s pkg-r-autopkgtest PASS 622s nova [W] Skipping flock for amd64 622s Creating nova instance adt-plucky-amd64-r-cran-seurat-20250117-131715-juju-7f2275-prod-proposed-migration-environment-15-e2245b7c-fe0c-4bb2-b605-d642db42df8a from image adt/ubuntu-plucky-amd64-server-20250117.img (UUID 8f35863a-398a-4b7d-9594-544c7b7656c3)... 622s nova [W] Timed out waiting for c9e4aa84-d365-4952-9de6-8b560322f030 to get deleted. 622s nova [W] Skipping flock for amd64 622s Creating nova instance adt-plucky-amd64-r-cran-seurat-20250117-131715-juju-7f2275-prod-proposed-migration-environment-15-e2245b7c-fe0c-4bb2-b605-d642db42df8a from image adt/ubuntu-plucky-amd64-server-20250117.img (UUID 8f35863a-398a-4b7d-9594-544c7b7656c3)... 622s nova [W] Timed out waiting for 27de85f0-aa15-4fc2-8e6b-ec2ca3ff8daa to get deleted.