0s autopkgtest [12:01:49]: starting date and time: 2025-01-17 12:01:49+0000 0s autopkgtest [12:01:49]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [12:01:49]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.n853kbek/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-limma,src:r-bioc-biocgenerics,src:r-cran-seurat --apt-upgrade r-cran-seurat --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-limma/3.62.2+dfsg-1 r-bioc-biocgenerics/0.52.0-2 r-cran-seurat/5.1.0-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-22.secgroup --name adt-plucky-amd64-r-cran-seurat-20250117-120149-juju-7f2275-prod-proposed-migration-environment-2-0c324a0e-51d6-4942-b633-ceb6c1e1190d --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 65s autopkgtest [12:02:54]: testbed dpkg architecture: amd64 66s autopkgtest [12:02:55]: testbed apt version: 2.9.18 66s autopkgtest [12:02:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup 66s autopkgtest [12:02:55]: testbed release detected to be: None 67s autopkgtest [12:02:56]: updating testbed package index (apt update) 67s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 67s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 67s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 68s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 68s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [177 kB] 68s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 68s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [877 kB] 68s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.7 kB] 68s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [330 kB] 68s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [227 kB] 68s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [40.1 kB] 68s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2408 B] 68s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [463 kB] 68s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [1097 kB] 68s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [4856 B] 68s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [25.3 kB] 68s Fetched 3343 kB in 1s (3183 kB/s) 69s Reading package lists... 70s + lsb_release --codename --short 70s + RELEASE=plucky 70s + cat 70s + [ plucky != trusty ] 70s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 70s Reading package lists... 70s Building dependency tree... 70s Reading state information... 70s Calculating upgrade... 70s The following packages will be upgraded: 70s libgudev-1.0-0 usb.ids 71s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 71s Need to get 239 kB of archives. 71s After this operation, 0 B of additional disk space will be used. 71s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 usb.ids all 2025.01.14-1 [223 kB] 71s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libgudev-1.0-0 amd64 1:238-6 [15.8 kB] 71s Fetched 239 kB in 1s (473 kB/s) 71s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 71s Preparing to unpack .../usb.ids_2025.01.14-1_all.deb ... 71s Unpacking usb.ids (2025.01.14-1) over (2024.12.04-1) ... 71s Preparing to unpack .../libgudev-1.0-0_1%3a238-6_amd64.deb ... 71s Unpacking libgudev-1.0-0:amd64 (1:238-6) over (1:238-5ubuntu1) ... 71s Setting up usb.ids (2025.01.14-1) ... 71s Setting up libgudev-1.0-0:amd64 (1:238-6) ... 71s Processing triggers for libc-bin (2.40-4ubuntu1) ... 72s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 72s + /usr/lib/apt/apt-helper analyze-pattern ?true 72s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove ?obsolete 72s Reading package lists... 72s Building dependency tree... 72s Reading state information... 72s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 72s + grep -q trusty /etc/lsb-release 72s + [ ! -d /usr/share/doc/unattended-upgrades ] 72s + [ ! -d /usr/share/doc/lxd ] 72s + [ ! -d /usr/share/doc/lxd-client ] 72s + [ ! -d /usr/share/doc/snapd ] 72s + type iptables 72s + cat 72s + chmod 755 /etc/rc.local 72s + . /etc/rc.local 72s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 72s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 72s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 72s + uname -m 72s + [ x86_64 = ppc64le ] 72s + [ -d /run/systemd/system ] 72s + systemd-detect-virt --quiet --vm 72s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 72s + cat 72s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 72s + echo COMPRESS=lz4 72s + sync 72s autopkgtest [12:03:01]: upgrading testbed (apt dist-upgrade and autopurge) 73s Reading package lists... 73s Building dependency tree... 73s Reading state information... 73s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 73s Starting 2 pkgProblemResolver with broken count: 0 73s Done 74s Entering ResolveByKeep 74s 74s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 74s Reading package lists... 75s Building dependency tree... 75s Reading state information... 75s Starting pkgProblemResolver with broken count: 0 75s Starting 2 pkgProblemResolver with broken count: 0 75s Done 76s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 78s autopkgtest [12:03:07]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 78s autopkgtest [12:03:07]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-seurat 80s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/universe r-cran-seurat 5.1.0-1 (dsc) [3385 B] 80s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe r-cran-seurat 5.1.0-1 (tar) [2064 kB] 80s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe r-cran-seurat 5.1.0-1 (diff) [4724 B] 80s gpgv: Signature made Tue Sep 10 23:46:06 2024 UTC 80s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 80s gpgv: issuer "plessy@debian.org" 80s gpgv: Can't check signature: No public key 80s dpkg-source: warning: cannot verify inline signature for ./r-cran-seurat_5.1.0-1.dsc: no acceptable signature found 80s autopkgtest [12:03:09]: testing package r-cran-seurat version 5.1.0-1 81s autopkgtest [12:03:10]: build not needed 84s autopkgtest [12:03:13]: test run-unit-test: preparing testbed 85s Reading package lists... 85s Building dependency tree... 85s Reading state information... 85s Starting pkgProblemResolver with broken count: 12 85s Starting 2 pkgProblemResolver with broken count: 12 85s Investigating (0) r-bioc-s4vectors:amd64 < none -> 0.42.1+dfsg-2 @un puN Ib > 85s Broken r-bioc-s4vectors:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 85s Considering r-bioc-biocgenerics:amd64 54 as a solution to r-bioc-s4vectors:amd64 34 85s Re-Instated r-bioc-biocgenerics:amd64 85s Investigating (0) r-bioc-iranges:amd64 < none -> 2.38.1-1 @un puN Ib > 85s Broken r-bioc-iranges:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 85s Considering r-bioc-biocgenerics:amd64 34 as a solution to r-bioc-iranges:amd64 24 85s Investigating (0) r-bioc-genomeinfodb:amd64 < none -> 1.40.1+dfsg-1 @un puN Ib > 85s Broken r-bioc-genomeinfodb:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 85s Considering r-bioc-biocgenerics:amd64 34 as a solution to r-bioc-genomeinfodb:amd64 13 85s Broken r-bioc-genomeinfodb:amd64 Depends on r-bioc-ucsc.utils:amd64 < none | 1.0.0+ds-2 @un uH > (> 1.0.0+ds-1) 85s Considering r-bioc-ucsc.utils:amd64 0 as a solution to r-bioc-genomeinfodb:amd64 13 85s Reinst Failed because of protected r-bioc-biocgenerics:amd64 85s Considering r-bioc-ucsc.utils:amd64 0 as a solution to r-bioc-genomeinfodb:amd64 13 85s Broken r-bioc-genomeinfodb:amd64 Depends on r-bioc-genomeinfodbdata:amd64 < none | 1.2.13-2 @un uH > (>= 1.2.12) 85s Considering r-bioc-genomeinfodbdata:amd64 0 as a solution to r-bioc-genomeinfodb:amd64 13 85s Re-Instated r-bioc-genomeinfodbdata:amd64 85s Investigating (0) r-bioc-genomicranges:amd64 < none -> 1.56.2+dfsg-1 @un puN Ib > 85s Broken r-bioc-genomicranges:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 85s Considering r-bioc-biocgenerics:amd64 34 as a solution to r-bioc-genomicranges:amd64 11 85s Broken r-bioc-genomicranges:amd64 Depends on r-bioc-xvector:amd64 < none | 0.44.0-1 @un uH > (>= 0.29.2) 85s Considering r-bioc-xvector:amd64 0 as a solution to r-bioc-genomicranges:amd64 11 85s Reinst Failed because of protected r-bioc-biocgenerics:amd64 85s Considering r-bioc-xvector:amd64 0 as a solution to r-bioc-genomicranges:amd64 11 85s Investigating (0) r-bioc-biobase:amd64 < none -> 2.64.0-4 @un puN Ib > 85s Broken r-bioc-biobase:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 85s Considering r-bioc-biocgenerics:amd64 34 as a solution to r-bioc-biobase:amd64 10 85s Investigating (0) r-bioc-delayedarray:amd64 < none -> 0.30.1+dfsg-1 @un puN Ib > 85s Broken r-bioc-delayedarray:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 85s Considering r-bioc-biocgenerics:amd64 34 as a solution to r-bioc-delayedarray:amd64 7 85s Broken r-bioc-delayedarray:amd64 Depends on r-bioc-matrixgenerics:amd64 < none | 1.16.0-2 @un uH > (>= 1.16.0) 85s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-delayedarray:amd64 7 85s Reinst Failed because of protected r-bioc-biocgenerics:amd64 85s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-delayedarray:amd64 7 85s Broken r-bioc-delayedarray:amd64 Depends on r-bioc-s4arrays:amd64 < none | 1.4.1+dfsg-1 @un uH > (>= 1.4.1) 85s Considering r-bioc-s4arrays:amd64 0 as a solution to r-bioc-delayedarray:amd64 7 85s Reinst Failed because of protected r-bioc-biocgenerics:amd64 85s Considering r-bioc-s4arrays:amd64 0 as a solution to r-bioc-delayedarray:amd64 7 85s Broken r-bioc-delayedarray:amd64 Depends on r-bioc-sparsearray:amd64 < none | 1.4.8+dfsg-1 @un uH > (>= 1.4.8) 85s Considering r-bioc-sparsearray:amd64 0 as a solution to r-bioc-delayedarray:amd64 7 85s Reinst Failed because of protected r-bioc-biocgenerics:amd64 85s Considering r-bioc-sparsearray:amd64 0 as a solution to r-bioc-delayedarray:amd64 7 85s Investigating (0) r-bioc-summarizedexperiment:amd64 < none -> 1.34.0+dfsg-1 @un puN Ib > 85s Broken r-bioc-summarizedexperiment:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 85s Considering r-bioc-biocgenerics:amd64 34 as a solution to r-bioc-summarizedexperiment:amd64 5 85s Broken r-bioc-summarizedexperiment:amd64 Depends on r-bioc-matrixgenerics:amd64 < none | 1.16.0-2 @un uH > (>= 1.16.0) 85s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-summarizedexperiment:amd64 5 85s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-summarizedexperiment:amd64 5 85s Broken r-bioc-summarizedexperiment:amd64 Depends on r-bioc-s4arrays:amd64 < none | 1.4.1+dfsg-1 @un uH > (>= 1.4.1) 85s Considering r-bioc-s4arrays:amd64 0 as a solution to r-bioc-summarizedexperiment:amd64 5 85s Considering r-bioc-s4arrays:amd64 0 as a solution to r-bioc-summarizedexperiment:amd64 5 85s Investigating (0) r-bioc-rtracklayer:amd64 < none -> 1.64.0-1 @un puN Ib > 85s Broken r-bioc-rtracklayer:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 85s Considering r-bioc-biocgenerics:amd64 34 as a solution to r-bioc-rtracklayer:amd64 1 85s Broken r-bioc-rtracklayer:amd64 Depends on r-cran-xml:amd64 < none | 3.99-0.18-1 @un uH > (>= 1.98-0) 85s Considering r-cran-xml:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 85s Re-Instated r-cran-xml:amd64 85s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-xvector:amd64 < none | 0.44.0-1 @un uH > (>= 0.44.0) 85s Considering r-bioc-xvector:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 85s Considering r-bioc-xvector:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 85s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-biostrings:amd64 < none | 2.72.1+dfsg-1 @un uH > (>= 2.72.1) 85s Considering r-bioc-biostrings:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 85s Reinst Failed because of protected r-bioc-biocgenerics:amd64 85s Considering r-bioc-biostrings:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 85s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-zlibbioc:amd64 < none | 1.50.0+dfsg-2 @un uH > (>= 1.50.0) 85s Considering r-bioc-zlibbioc:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 85s Reinst Failed because of protected r-bioc-biocgenerics:amd64 85s Considering r-bioc-zlibbioc:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 85s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-rsamtools:amd64 < none | 2.20.0+dfsg-1 @un uH > (>= 2.20.0) 85s Considering r-bioc-rsamtools:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 85s Reinst Failed because of protected r-bioc-biocgenerics:amd64 85s Considering r-bioc-rsamtools:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 85s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-genomicalignments:amd64 < none | 1.40.0-1 @un uH > (>= 1.40.0) 85s Considering r-bioc-genomicalignments:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 85s Reinst Failed because of protected r-bioc-biocgenerics:amd64 85s Considering r-bioc-genomicalignments:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 85s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-biocio:amd64 < none | 1.14.0+dfsg-1 @un uH > (>= 1.14.0) 85s Considering r-bioc-biocio:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 85s Reinst Failed because of protected r-bioc-biocgenerics:amd64 85s Considering r-bioc-biocio:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 85s Broken r-bioc-rtracklayer:amd64 Depends on r-cran-restfulr:amd64 < none | 0.0.15-1 @un uH > (>= 0.0.13) 85s Considering r-cran-restfulr:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 85s Re-Instated r-cran-rcurl:amd64 85s Re-Instated r-cran-rjson:amd64 85s Re-Instated r-cran-restfulr:amd64 85s Investigating (0) r-bioc-singlecellexperiment:amd64 < none -> 1.26.0+ds-1 @un puN Ib > 85s Broken r-bioc-singlecellexperiment:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 85s Considering r-bioc-biocgenerics:amd64 34 as a solution to r-bioc-singlecellexperiment:amd64 1 85s Investigating (0) r-bioc-deseq2:amd64 < none -> 1.44.0+dfsg-1 @un puN Ib > 85s Broken r-bioc-deseq2:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 85s Considering r-bioc-biocgenerics:amd64 34 as a solution to r-bioc-deseq2:amd64 1 85s Broken r-bioc-deseq2:amd64 Depends on r-bioc-biocparallel:amd64 < none | 1.38.0-2 @un uH > (>= 1.38.0) 85s Considering r-bioc-biocparallel:amd64 0 as a solution to r-bioc-deseq2:amd64 1 85s Reinst Failed because of protected r-bioc-biocgenerics:amd64 85s Considering r-bioc-biocparallel:amd64 0 as a solution to r-bioc-deseq2:amd64 1 85s Broken r-bioc-deseq2:amd64 Depends on r-cran-locfit:amd64 < none | 1.5-9.10-1 @un uH > 85s Considering r-cran-locfit:amd64 2 as a solution to r-bioc-deseq2:amd64 1 85s Re-Instated r-cran-locfit:amd64 85s Broken r-bioc-deseq2:amd64 Depends on r-bioc-matrixgenerics:amd64 < none | 1.16.0-2 @un uH > (>= 1.16.0) 85s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-deseq2:amd64 1 85s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-deseq2:amd64 1 85s Investigating (0) r-bioc-monocle:amd64 < none -> 2.32.0-1 @un puN Ib > 85s Broken r-bioc-monocle:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 85s Considering r-bioc-biocgenerics:amd64 34 as a solution to r-bioc-monocle:amd64 1 85s Broken r-bioc-monocle:amd64 Depends on r-cran-ddrtree:amd64 < none | 0.1.5-2 @un uH > (>= 0.1.4) 85s Considering r-cran-ddrtree:amd64 0 as a solution to r-bioc-monocle:amd64 1 85s Re-Instated r-cran-ddrtree:amd64 85s Broken r-bioc-monocle:amd64 Depends on r-bioc-hsmmsinglecell:amd64 < none | 1.24.0-1 @un uH > (>= 0.101.5) 85s Considering r-bioc-hsmmsinglecell:amd64 0 as a solution to r-bioc-monocle:amd64 1 85s Reinst Failed because of protected r-bioc-biocgenerics:amd64 85s Considering r-bioc-hsmmsinglecell:amd64 0 as a solution to r-bioc-monocle:amd64 1 85s Broken r-bioc-monocle:amd64 Depends on r-cran-combinat:amd64 < none | 0.0-8-7build1 @un uH > 85s Considering r-cran-combinat:amd64 1 as a solution to r-bioc-monocle:amd64 1 85s Re-Instated r-cran-combinat:amd64 85s Broken r-bioc-monocle:amd64 Depends on r-cran-fastica:amd64 < none | 1.2-7-1 @un uH > 85s Considering r-cran-fastica:amd64 3 as a solution to r-bioc-monocle:amd64 1 85s Re-Instated r-cran-fastica:amd64 85s Broken r-bioc-monocle:amd64 Depends on r-cran-leidenbase:amd64 < none | 0.1.27-1 @un uH > (>= 0.1.9) 85s Considering r-cran-leidenbase:amd64 0 as a solution to r-bioc-monocle:amd64 1 85s Re-Instated r-cran-leidenbase:amd64 85s Broken r-bioc-monocle:amd64 Depends on r-cran-pheatmap:amd64 < none | 1.0.12-2build1 @un uH > 85s Considering r-cran-pheatmap:amd64 1 as a solution to r-bioc-monocle:amd64 1 85s Re-Instated r-cran-pheatmap:amd64 85s Broken r-bioc-monocle:amd64 Depends on r-cran-slam:amd64 < none | 0.1-55-1 @un uH > 85s Considering r-cran-slam:amd64 1 as a solution to r-bioc-monocle:amd64 1 85s Re-Instated r-cran-slam:amd64 85s Broken r-bioc-monocle:amd64 Depends on r-cran-viridis:amd64 < none | 0.6.5-1 @un uH > 85s Considering r-cran-viridis:amd64 2 as a solution to r-bioc-monocle:amd64 1 85s Re-Instated r-cran-viridis:amd64 85s Broken r-bioc-monocle:amd64 Depends on r-bioc-biocviews:amd64 < none | 1.72.0-1 @un uH > 85s Considering r-bioc-biocviews:amd64 1 as a solution to r-bioc-monocle:amd64 1 85s Reinst Failed because of protected r-bioc-biocgenerics:amd64 85s Considering r-bioc-biocviews:amd64 1 as a solution to r-bioc-monocle:amd64 1 85s Investigating (0) r-bioc-multtest:amd64 < none -> 2.60.0-1 @un puN Ib > 85s Broken r-bioc-multtest:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 85s Considering r-bioc-biocgenerics:amd64 34 as a solution to r-bioc-multtest:amd64 0 85s Done 85s Some packages could not be installed. This may mean that you have 85s requested an impossible situation or if you are using the unstable 85s distribution that some required packages have not yet been created 85s or been moved out of Incoming. 85s The following information may help to resolve the situation: 85s 85s The following packages have unmet dependencies: 86s r-bioc-biobase : Depends: r-api-bioc-3.19 86s r-bioc-delayedarray : Depends: r-api-bioc-3.19 86s Depends: r-bioc-matrixgenerics (>= 1.16.0) but it is not going to be installed 86s Depends: r-bioc-s4arrays (>= 1.4.1) but it is not going to be installed 86s Depends: r-bioc-sparsearray (>= 1.4.8) but it is not going to be installed 86s r-bioc-deseq2 : Depends: r-api-bioc-3.19 86s Depends: r-bioc-biocparallel (>= 1.38.0) but it is not going to be installed 86s Depends: r-bioc-matrixgenerics (>= 1.16.0) but it is not going to be installed 86s r-bioc-genomeinfodb : Depends: r-api-bioc-3.19 86s Depends: r-bioc-ucsc.utils (> 1.0.0+ds-1) but it is not going to be installed 86s r-bioc-genomicranges : Depends: r-api-bioc-3.19 86s Depends: r-bioc-xvector (>= 0.29.2) but it is not going to be installed 86s r-bioc-iranges : Depends: r-api-bioc-3.19 86s r-bioc-monocle : Depends: r-api-bioc-3.19 86s Depends: r-bioc-hsmmsinglecell (>= 0.101.5) but it is not going to be installed 86s Depends: r-bioc-biocviews but it is not going to be installed 86s r-bioc-multtest : Depends: r-api-bioc-3.19 86s r-bioc-rtracklayer : Depends: r-api-bioc-3.19 86s Depends: r-bioc-xvector (>= 0.44.0) but it is not going to be installed 86s Depends: r-bioc-biostrings (>= 2.72.1) but it is not going to be installed 86s Depends: r-bioc-zlibbioc (>= 1.50.0) but it is not going to be installed 86s Depends: r-bioc-rsamtools (>= 2.20.0) but it is not going to be installed 86s Depends: r-bioc-genomicalignments (>= 1.40.0) but it is not going to be installed 86s Depends: r-bioc-biocio (>= 1.14.0) but it is not going to be installed 86s r-bioc-s4vectors : Depends: r-api-bioc-3.19 86s r-bioc-singlecellexperiment : Depends: r-api-bioc-3.19 86s r-bioc-summarizedexperiment : Depends: r-api-bioc-3.19 86s Depends: r-bioc-matrixgenerics (>= 1.16.0) but it is not going to be installed 86s Depends: r-bioc-s4arrays (>= 1.4.1) but it is not going to be installed 86s E: Unable to correct problems, you have held broken packages. 86s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed 86s Reading package lists... 86s Building dependency tree... 86s Reading state information... 87s Starting pkgProblemResolver with broken count: 0 87s Starting 2 pkgProblemResolver with broken count: 0 87s Done 87s The following NEW packages will be installed: 87s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 87s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax 87s javascript-common libaec0 libamd3 libasan8 libblas3 libboost-dev 87s libboost1.83-dev libcairo2 libcolamd3 libdatrie1 libdeflate0 87s libfftw3-double3 libfontconfig1 libgcc-14-dev libgfortran5 libglpk40 87s libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 87s libhwasan0 libice6 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap 87s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 87s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 87s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 87s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack3 87s liblerc4 liblsan0 libltdl7 liblua5.4-0 libpango-1.0-0 libpangocairo-1.0-0 87s libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libquadmath0 87s libsharpyuv0 libsm6 libstdc++-14-dev libsuitesparseconfig7 libsz2 libtcl8.6 87s libthai-data libthai0 libtiff6 libtk8.6 libtsan2 libubsan1 libwebp7 87s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 littler 87s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 87s r-base-core r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio 87s r-bioc-biocparallel r-bioc-biocviews r-bioc-biostrings r-bioc-delayedarray 87s r-bioc-deseq2 r-bioc-genomeinfodb r-bioc-genomeinfodbdata 87s r-bioc-genomicalignments r-bioc-genomicranges r-bioc-graph 87s r-bioc-hsmmsinglecell r-bioc-iranges r-bioc-limma r-bioc-matrixgenerics 87s r-bioc-monocle r-bioc-multtest r-bioc-rbgl r-bioc-rhtslib r-bioc-rsamtools 87s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 87s r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-summarizedexperiment 87s r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-ape 87s r-cran-askpass r-cran-base64enc r-cran-beeswarm r-cran-bh r-cran-biocmanager 87s r-cran-bit r-cran-bit64 r-cran-bitops r-cran-brio r-cran-bslib r-cran-cachem 87s r-cran-cairo r-cran-callr r-cran-caret r-cran-catools r-cran-class 87s r-cran-cli r-cran-clock r-cran-cluster r-cran-codetools r-cran-colorspace 87s r-cran-colourpicker r-cran-combinat r-cran-commonmark r-cran-conquer 87s r-cran-cowplot r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl 87s r-cran-data.table r-cran-ddrtree r-cran-deldir r-cran-deoptimr r-cran-desc 87s r-cran-diagram r-cran-diffobj r-cran-digest r-cran-dotcall64 r-cran-dplyr 87s r-cran-dqrng r-cran-e1071 r-cran-evaluate r-cran-fansi r-cran-farver 87s r-cran-fastdummies r-cran-fastica r-cran-fastmap r-cran-fitdistrplus 87s r-cran-fnn r-cran-fontawesome r-cran-foreach r-cran-formatr r-cran-fs 87s r-cran-futile.logger r-cran-futile.options r-cran-future r-cran-future.apply 87s r-cran-gdata r-cran-generics r-cran-ggbeeswarm r-cran-ggplot2 r-cran-ggrastr 87s r-cran-ggrepel r-cran-ggridges r-cran-globals r-cran-glue r-cran-goftest 87s r-cran-gower r-cran-gplots r-cran-gridextra r-cran-gtable r-cran-gtools 87s r-cran-hardhat r-cran-hdf5r r-cran-here r-cran-highr r-cran-htmltools 87s r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-ica r-cran-igraph 87s r-cran-ipred r-cran-irlba r-cran-isoband r-cran-iterators r-cran-jquerylib 87s r-cran-jsonlite r-cran-kernlab r-cran-kernsmooth r-cran-knitr 87s r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lava 87s r-cran-lazyeval r-cran-leiden r-cran-leidenbase r-cran-lifecycle 87s r-cran-listenv r-cran-littler r-cran-lmtest r-cran-locfit r-cran-lubridate 87s r-cran-magrittr r-cran-mass r-cran-mathjaxr r-cran-matrix 87s r-cran-matrixmodels r-cran-matrixstats r-cran-memoise r-cran-metap 87s r-cran-mgcv r-cran-mime r-cran-miniui r-cran-mixtools r-cran-mnormt 87s r-cran-modelmetrics r-cran-multcomp r-cran-munsell r-cran-mutoss 87s r-cran-mvtnorm r-cran-nlme r-cran-nnet r-cran-numderiv r-cran-openssl 87s r-cran-parallelly r-cran-patchwork r-cran-pbapply r-cran-pheatmap 87s r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 87s r-cran-pkgload r-cran-plotly r-cran-plotrix r-cran-plyr r-cran-png 87s r-cran-polyclip r-cran-praise r-cran-proc r-cran-processx r-cran-prodlim 87s r-cran-progressr r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr 87s r-cran-qqconf r-cran-quantreg r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils 87s r-cran-r6 r-cran-ragg r-cran-rann r-cran-rappdirs r-cran-rbibutils 87s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppannoy r-cran-rcpparmadillo 87s r-cran-rcppeigen r-cran-rcpphnsw r-cran-rcppprogress r-cran-rcpptoml 87s r-cran-rcurl r-cran-rdpack r-cran-recipes r-cran-reshape2 r-cran-restfulr 87s r-cran-reticulate r-cran-rjson r-cran-rlang r-cran-rmarkdown 87s r-cran-robustbase r-cran-rocr r-cran-rpart r-cran-rprojroot r-cran-rspectra 87s r-cran-rsvd r-cran-rtsne r-cran-runit r-cran-sandwich r-cran-sass 87s r-cran-scales r-cran-scattermore r-cran-sctransform r-cran-segmented 87s r-cran-seurat r-cran-seuratobject r-cran-shape r-cran-shiny r-cran-shinyjs 87s r-cran-sitmo r-cran-slam r-cran-sn r-cran-snow r-cran-sourcetools r-cran-sp 87s r-cran-spam r-cran-sparsem r-cran-spatstat.data r-cran-spatstat.explore 87s r-cran-spatstat.geom r-cran-spatstat.random r-cran-spatstat.sparse 87s r-cran-spatstat.utils r-cran-squarem r-cran-statmod r-cran-stringi 87s r-cran-stringr r-cran-survival r-cran-sys r-cran-systemfonts r-cran-tensor 87s r-cran-testthat r-cran-textshaping r-cran-tfisher r-cran-th.data 87s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-timechange 87s r-cran-timedate r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-uwot 87s r-cran-vctrs r-cran-vgam r-cran-vipor r-cran-viridis r-cran-viridislite 87s r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml 87s r-cran-zoo unzip x11-common xdg-utils zip zlib1g-dev 87s The following packages will be upgraded: 87s gcc-14-base libatomic1 libgcc-s1 libstdc++6 87s 4 upgraded, 371 newly installed, 0 to remove and 126 not upgraded. 87s Need to get 414 MB of archives. 87s After this operation, 1094 MB of additional disk space will be used. 87s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 gcc-14-base amd64 14.2.0-13ubuntu1 [53.0 kB] 87s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libstdc++6 amd64 14.2.0-13ubuntu1 [787 kB] 88s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libatomic1 amd64 14.2.0-13ubuntu1 [10.3 kB] 88s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgcc-s1 amd64 14.2.0-13ubuntu1 [78.2 kB] 88s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 88s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 88s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 88s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 88s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 88s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 88s Get:11 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 89s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 89s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 11+nmu1 [5936 B] 89s Get:14 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 89s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgomp1 amd64 14.2.0-13ubuntu1 [148 kB] 89s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsuitesparseconfig7 amd64 1:7.8.3+dfsg-2 [13.4 kB] 89s Get:17 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamd3 amd64 1:7.8.3+dfsg-2 [31.1 kB] 89s Get:18 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libasan8 amd64 14.2.0-13ubuntu1 [2998 kB] 89s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-4 [332 kB] 89s Get:20 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libitm1 amd64 14.2.0-13ubuntu1 [29.1 kB] 89s Get:21 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 liblsan0 amd64 14.2.0-13ubuntu1 [1317 kB] 90s Get:22 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libtsan2 amd64 14.2.0-13ubuntu1 [2732 kB] 90s Get:23 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libubsan1 amd64 14.2.0-13ubuntu1 [1177 kB] 90s Get:24 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libhwasan0 amd64 14.2.0-13ubuntu1 [1634 kB] 90s Get:25 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libquadmath0 amd64 14.2.0-13ubuntu1 [153 kB] 90s Get:26 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgcc-14-dev amd64 14.2.0-13ubuntu1 [2815 kB] 90s Get:27 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libstdc++-14-dev amd64 14.2.0-13ubuntu1 [2508 kB] 90s Get:28 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost1.83-dev amd64 1.83.0-4ubuntu2 [10.7 MB] 91s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 91s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 91s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 91s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 91s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 91s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 91s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libcolamd3 amd64 1:7.8.3+dfsg-2 [19.5 kB] 91s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 91s Get:37 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 91s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libfftw3-double3 amd64 3.3.10-2fakesync1build1 [839 kB] 91s Get:39 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgfortran5 amd64 14.2.0-13ubuntu1 [909 kB] 91s Get:40 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libltdl7 amd64 2.5.4-2 [46.0 kB] 91s Get:41 http://ftpmaster.internal/ubuntu plucky/universe amd64 libglpk40 amd64 5.0-1build2 [369 kB] 91s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 91s Get:43 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 91s Get:44 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 91s Get:45 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-5ubuntu1 [1367 kB] 91s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-5ubuntu1 [59.5 kB] 91s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 91s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 91s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 91s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 91s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 91s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 91s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 91s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 91s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 91s Get:56 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 91s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 91s Get:58 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 91s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 91s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 91s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 91s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 91s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 91s Get:64 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 91s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-4 [3177 kB] 91s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 91s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 91s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 92s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 92s Get:70 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpango-1.0-0 amd64 1.56.0-3 [255 kB] 92s Get:71 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpangoft2-1.0-0 amd64 1.56.0-3 [52.5 kB] 92s Get:72 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpangocairo-1.0-0 amd64 1.56.0-3 [29.1 kB] 92s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 92s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 92s Get:75 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 92s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 92s Get:77 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 92s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 92s Get:79 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 92s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 92s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 92s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 92s Get:83 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 92s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 92s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu1 [185 kB] 92s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 92s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-0ubuntu1 [67.5 kB] 92s Get:88 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-base-core amd64 4.4.2-1build1 [28.9 MB] 92s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 92s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 92s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 92s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 92s Get:93 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 92s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 92s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 93s Get:96 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 93s Get:97 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 93s Get:98 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 93s Get:99 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 93s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 93s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 93s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 94s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 94s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 94s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 94s Get:106 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 94s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.0-1 [221 kB] 94s Get:108 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 94s Get:109 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-graph amd64 1.84.1-1 [1298 kB] 94s Get:110 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-rbgl amd64 1.82.0+dfsg-2 [588 kB] 94s Get:111 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml amd64 3.99-0.18-1 [1748 kB] 94s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bitops amd64 1.0-8-1 [30.3 kB] 94s Get:113 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB] 94s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-runit all 0.4.33-1 [377 kB] 94s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 94s Get:116 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biocviews all 1.74.0-2 [670 kB] 94s Get:117 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB] 94s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 95s Get:119 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 95s Get:120 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 95s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 5.2.3+dfsg-1ubuntu1 [180 kB] 95s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.8.9+dfsg-1 [445 kB] 95s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 95s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 95s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 95s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.2.0+dfsg-1 [405 kB] 95s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 95s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 95s Get:129 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 95s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 95s Get:131 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-genomeinfodb all 1.42.1+dfsg-2 [3883 kB] 95s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 95s Get:133 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 96s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 96s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-1-1 [4199 kB] 96s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.4.1-1 [513 kB] 96s Get:137 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-matrixgenerics all 1.18.0-2 [446 kB] 96s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 96s Get:139 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 96s Get:140 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-sparsearray amd64 1.6.0+dfsg-2 [1392 kB] 96s Get:141 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 96s Get:142 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB] 96s Get:143 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 96s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-locfit amd64 1.5-9.10-1 [518 kB] 96s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.3-1 [1348 kB] 96s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 96s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.4-1 [1708 kB] 96s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 96s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 96s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 97s Get:151 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 97s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.166-1 [2314 kB] 97s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 97s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 97s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 97s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 97s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB] 97s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 97s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 97s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 97s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 97s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 97s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 97s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 97s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 97s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 97s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 97s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 97s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 97s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 97s Get:171 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 97s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpparmadillo amd64 14.2.2-1-1 [864 kB] 97s Get:173 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-deseq2 amd64 1.46.0+dfsg-2 [1250 kB] 97s Get:174 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB] 97s Get:175 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB] 98s Get:176 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB] 98s Get:177 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-hsmmsinglecell all 1.26.0-2 [16.7 MB] 98s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 98s Get:179 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-limma amd64 3.62.2+dfsg-1 [1969 kB] 98s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vgam amd64 1.1-11-1 [7726 kB] 99s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-irlba amd64 2.3.5.1-4 [295 kB] 99s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 99s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ddrtree amd64 0.1.5-2 [154 kB] 99s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-igraph amd64 2.0.3-1 [5098 kB] 99s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 99s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cluster amd64 2.1.8-1 [579 kB] 99s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-combinat all 0.0-8-7build1 [43.1 kB] 99s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastica amd64 1.2-7-1 [46.6 kB] 99s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rtsne amd64 0.17-1 [109 kB] 99s Get:190 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB] 99s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 99s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-reshape2 amd64 1.4.4-2build1 [114 kB] 99s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-leidenbase amd64 0.1.27-1 [2366 kB] 99s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 99s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 99s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 99s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pheatmap all 1.0.12-2build1 [78.2 kB] 99s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 99s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-slam amd64 0.1-55-1 [188 kB] 99s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 99s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 99s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rann amd64 2.6.2-1 [46.3 kB] 99s Get:203 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-monocle amd64 2.34.0-2 [1522 kB] 100s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB] 100s Get:205 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-multtest amd64 2.62.0-2 [844 kB] 100s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB] 100s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 100s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 100s Get:209 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-rtracklayer amd64 1.66.0-2 [5227 kB] 101s Get:210 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-singlecellexperiment all 1.28.1+ds-2 [829 kB] 101s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 101s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ape amd64 5.8-1 [2923 kB] 101s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 101s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-beeswarm amd64 0.4.0-1 [82.3 kB] 101s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 101s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 101s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 101s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 101s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 101s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 101s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 101s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 101s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.4+dfsg-1 [245 kB] 101s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 101s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 101s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.7.0+dfsg-1 [4255 kB] 101s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cairo amd64 1.6-2-1 [88.8 kB] 101s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.8.0-1 [395 kB] 101s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.4-1 [353 kB] 101s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 101s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 101s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-e1071 amd64 1.7-16-1 [565 kB] 101s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-iterators all 1.0.14-1 [336 kB] 101s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-foreach all 1.5.2-1 [124 kB] 101s Get:235 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-data.table amd64 1.16.4+dfsg-1 [2032 kB] 101s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-modelmetrics amd64 1.2.2.2-1build1 [128 kB] 101s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-proc amd64 1.18.5-1 [966 kB] 101s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tzdb amd64 0.4.0-2 [521 kB] 101s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-clock amd64 0.7.1-1 [1804 kB] 101s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gower amd64 1.0.1-1 [207 kB] 101s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-hardhat all 1.4.0+dfsg-1 [565 kB] 101s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB] 102s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nnet amd64 7.3-20-1 [116 kB] 102s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shape all 1.4.6.1-1 [749 kB] 102s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diagram all 1.6.5-2 [656 kB] 102s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernsmooth amd64 2.23-26-1 [94.5 kB] 102s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-globals all 0.16.3-1 [120 kB] 102s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 102s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-parallelly amd64 1.38.0-1 [385 kB] 102s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 102s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future.apply all 1.11.2+dfsg-1 [172 kB] 102s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-numderiv all 2016.8-1.1-3 [115 kB] 102s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-progressr all 0.14.0-1 [338 kB] 102s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-squarem all 2021.1-1 [179 kB] 102s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lava all 1.7.3+dfsg-1 [2166 kB] 102s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-prodlim amd64 2024.06.25-1 [415 kB] 102s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ipred amd64 0.9-15-1 [386 kB] 102s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-timechange amd64 0.3.0-1 [178 kB] 102s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lubridate amd64 1.9.3+dfsg-1 [1010 kB] 102s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 102s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 102s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-timedate amd64 4041.110-1 [1208 kB] 102s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-recipes all 1.1.0+dfsg-1 [2035 kB] 102s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-caret amd64 6.0-94+dfsg-1 [3434 kB] 102s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-catools amd64 1.18.2-1 [201 kB] 102s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.0-1 [111 kB] 102s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.49+dfsg-1 [545 kB] 102s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 102s Get:269 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 102s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 103s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 103s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.53-1 [145 kB] 103s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 103s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 103s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.0+dfsg-1 [287 kB] 103s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 103s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 103s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 103s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 103s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 103s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.9.1+dfsg-1 [3111 kB] 103s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.28+dfsg-1 [1501 kB] 103s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 103s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-miniui all 0.1.1.1-3build1 [36.1 kB] 103s Get:285 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shinyjs all 2.1.0-1 [967 kB] 103s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colourpicker all 1.3.0+dfsg-1 [1191 kB] 103s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-conquer amd64 1.3.3-1 [499 kB] 103s Get:288 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cowplot all 1.1.3+dfsg-1 [614 kB] 103s Get:289 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 103s Get:290 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 103s Get:291 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 103s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deoptimr all 1.1-3-1-1 [76.6 kB] 103s Get:293 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 103s Get:294 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 103s Get:295 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dotcall64 amd64 1.1-1-1 [38.1 kB] 103s Get:296 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sitmo amd64 2.0.2-1 [130 kB] 103s Get:297 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dqrng amd64 0.3.2+dfsg-1 [161 kB] 103s Get:298 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastdummies all 1.7.4-1 [49.7 kB] 103s Get:299 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fitdistrplus all 1.2-1-1 [2038 kB] 103s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB] 103s Get:301 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtools amd64 3.9.5-1 [340 kB] 103s Get:302 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gdata all 3.0.1-1 [491 kB] 103s Get:303 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vipor all 0.4.7-1 [4624 kB] 104s Get:304 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggbeeswarm all 0.7.2-1 [1732 kB] 104s Get:305 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 104s Get:306 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-systemfonts amd64 1.1.0-1 [245 kB] 104s Get:307 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-textshaping amd64 0.3.7-2 [95.5 kB] 104s Get:308 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ragg amd64 1.3.3-1 [510 kB] 104s Get:309 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggrastr all 1.0.2-1 [2566 kB] 104s Get:310 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggrepel amd64 0.9.5-2 [254 kB] 104s Get:311 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggridges all 0.5.6-1 [2195 kB] 104s Get:312 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-goftest amd64 1.2-3-1 [59.5 kB] 104s Get:313 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gplots all 3.2.0-1 [484 kB] 104s Get:314 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-hdf5r amd64 1.3.11+dfsg-1 [1979 kB] 104s Get:315 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 104s Get:316 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-here all 1.0.1-2 [50.3 kB] 104s Get:317 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ica all 1.0-3-1 [85.4 kB] 104s Get:318 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernlab amd64 0.9-33-1 [1947 kB] 104s Get:319 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpptoml amd64 0.2.2+dfsg-1 [110 kB] 104s Get:320 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-reticulate amd64 1.39.0+dfsg-1 [1238 kB] 105s Get:321 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-leiden all 0.4.3.1+dfsg-1 [71.9 kB] 105s Get:322 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-zoo amd64 1.8-12-2 [984 kB] 105s Get:323 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lmtest amd64 0.9.40-1 [396 kB] 105s Get:324 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mathjaxr all 1.6-0-1 [605 kB] 105s Get:325 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixmodels all 0.5-3-1 [361 kB] 105s Get:326 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rbibutils amd64 2.3-1 [1023 kB] 105s Get:327 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rdpack all 2.6.2-1 [757 kB] 105s Get:328 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mnormt amd64 2.1.1-2 [170 kB] 105s Get:329 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sparsem amd64 1.84-2-1 [813 kB] 105s Get:330 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-quantreg amd64 5.99.1-1 [1455 kB] 105s Get:331 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sn all 2.1.1-2 [1815 kB] 105s Get:332 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-mvtnorm amd64 1.3-3-1 [923 kB] 105s Get:333 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tfisher all 0.2.0-3 [79.8 kB] 105s Get:334 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plotrix all 3.8-4-1 [1120 kB] 105s Get:335 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-th.data all 1.1-2-2 [8794 kB] 105s Get:336 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sandwich all 3.1-1-1 [1483 kB] 105s Get:337 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-multcomp all 1.4-26-2 [699 kB] 106s Get:338 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mutoss all 0.1-13-1 [1123 kB] 106s Get:339 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-robustbase amd64 0.99-4-1-1 [3038 kB] 106s Get:340 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-qqconf amd64 1.3.2+dfsg-1 [157 kB] 106s Get:341 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-metap all 1.11-1 [570 kB] 106s Get:342 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plotly all 4.10.4+dfsg-2 [3666 kB] 106s Get:343 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-segmented all 2.1-3-1 [1366 kB] 106s Get:344 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mixtools amd64 2.0.0-1 [1399 kB] 106s Get:345 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-patchwork all 1.3.0-1 [3220 kB] 106s Get:346 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 106s Get:347 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.4-1 [212 kB] 106s Get:348 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 106s Get:349 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB] 106s Get:350 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 106s Get:351 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 106s Get:352 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.oo all 1.26.0-1 [955 kB] 106s Get:353 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.utils all 2.12.3-1 [1386 kB] 106s Get:354 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppannoy amd64 0.0.22-1 [235 kB] 106s Get:355 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpphnsw amd64 0.5.0+ds-1 [171 kB] 106s Get:356 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppprogress all 0.4.2-2build1 [22.0 kB] 106s Get:357 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rocr all 1.0-11-3 [456 kB] 106s Get:358 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rspectra amd64 0.16-2-1 [448 kB] 106s Get:359 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsvd all 1.0.5-1 [3589 kB] 106s Get:360 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scattermore amd64 1.2-1 [331 kB] 106s Get:361 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sctransform amd64 0.4.1-1 [504 kB] 106s Get:362 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sp amd64 1:2.1-4+dfsg-1 [1472 kB] 106s Get:363 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spam amd64 2.11-0-1 [2758 kB] 107s Get:364 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-seuratobject amd64 5.0.2-1 [1744 kB] 107s Get:365 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.utils amd64 3.1-0-1 [381 kB] 107s Get:366 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.data all 3.1-2-1 [4039 kB] 107s Get:367 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.geom amd64 3.2-9-2 [3946 kB] 107s Get:368 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.random amd64 3.2-3-1 [1169 kB] 107s Get:369 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tensor all 1.5-4 [15.7 kB] 107s Get:370 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.sparse amd64 3.0-3-1 [215 kB] 107s Get:371 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.explore amd64 3.2-7-1 [3432 kB] 107s Get:372 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-uwot amd64 0.2.2-1 [947 kB] 107s Get:373 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-seurat amd64 5.1.0-1 [3255 kB] 107s Get:374 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-1 [150 kB] 107s Get:375 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.1.1-1 [1636 kB] 108s Preconfiguring packages ... 108s Fetched 414 MB in 20s (20.5 MB/s) 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 108s Preparing to unpack .../gcc-14-base_14.2.0-13ubuntu1_amd64.deb ... 108s Unpacking gcc-14-base:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 108s Setting up gcc-14-base:amd64 (14.2.0-13ubuntu1) ... 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 108s Preparing to unpack .../libstdc++6_14.2.0-13ubuntu1_amd64.deb ... 108s Unpacking libstdc++6:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 108s Setting up libstdc++6:amd64 (14.2.0-13ubuntu1) ... 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 108s Preparing to unpack .../libatomic1_14.2.0-13ubuntu1_amd64.deb ... 108s Unpacking libatomic1:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 108s Preparing to unpack .../libgcc-s1_14.2.0-13ubuntu1_amd64.deb ... 108s Unpacking libgcc-s1:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 108s Setting up libgcc-s1:amd64 (14.2.0-13ubuntu1) ... 108s Selecting previously unselected package fonts-dejavu-mono. 108s (Reading database ... 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package fonts-mathjax. 109s Preparing to unpack .../007-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 109s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 109s Selecting previously unselected package javascript-common. 109s Preparing to unpack .../008-javascript-common_11+nmu1_all.deb ... 109s Unpacking javascript-common (11+nmu1) ... 109s Selecting previously unselected package libaec0:amd64. 109s Preparing to unpack .../009-libaec0_1.1.3-1_amd64.deb ... 109s Unpacking libaec0:amd64 (1.1.3-1) ... 109s Selecting previously unselected package libgomp1:amd64. 109s Preparing to unpack .../010-libgomp1_14.2.0-13ubuntu1_amd64.deb ... 109s Unpacking libgomp1:amd64 (14.2.0-13ubuntu1) ... 109s Selecting previously unselected package libsuitesparseconfig7:amd64. 109s Preparing to unpack .../011-libsuitesparseconfig7_1%3a7.8.3+dfsg-2_amd64.deb ... 109s Unpacking libsuitesparseconfig7:amd64 (1:7.8.3+dfsg-2) ... 109s Selecting previously unselected package libamd3:amd64. 109s Preparing to unpack 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previously unselected package libxrender1:amd64. 112s Preparing to unpack .../028-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 112s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 112s Selecting previously unselected package libcairo2:amd64. 112s Preparing to unpack .../029-libcairo2_1.18.2-2_amd64.deb ... 112s Unpacking libcairo2:amd64 (1.18.2-2) ... 112s Selecting previously unselected package libcolamd3:amd64. 112s Preparing to unpack .../030-libcolamd3_1%3a7.8.3+dfsg-2_amd64.deb ... 112s Unpacking libcolamd3:amd64 (1:7.8.3+dfsg-2) ... 112s Selecting previously unselected package libdatrie1:amd64. 112s Preparing to unpack .../031-libdatrie1_0.2.13-3build1_amd64.deb ... 112s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 112s Selecting previously unselected package libdeflate0:amd64. 112s Preparing to unpack .../032-libdeflate0_1.23-1_amd64.deb ... 112s Unpacking libdeflate0:amd64 (1.23-1) ... 112s Selecting previously unselected package libfftw3-double3:amd64. 112s Preparing to unpack .../033-libfftw3-double3_3.3.10-2fakesync1build1_amd64.deb ... 112s Unpacking libfftw3-double3:amd64 (3.3.10-2fakesync1build1) ... 112s Selecting previously unselected package libgfortran5:amd64. 112s Preparing to unpack .../034-libgfortran5_14.2.0-13ubuntu1_amd64.deb ... 112s Unpacking libgfortran5:amd64 (14.2.0-13ubuntu1) ... 112s Selecting previously unselected package libltdl7:amd64. 112s Preparing to unpack .../035-libltdl7_2.5.4-2_amd64.deb ... 112s Unpacking libltdl7:amd64 (2.5.4-2) ... 112s Selecting previously unselected package libglpk40:amd64. 112s Preparing to unpack .../036-libglpk40_5.0-1build2_amd64.deb ... 112s Unpacking libglpk40:amd64 (5.0-1build2) ... 112s Selecting previously unselected package libgraphite2-3:amd64. 112s Preparing to unpack .../037-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 112s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 112s Selecting previously unselected package libharfbuzz0b:amd64. 112s Preparing to unpack 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.../043-libice6_2%3a1.1.1-1_amd64.deb ... 112s Unpacking libice6:amd64 (2:1.1.1-1) ... 112s Selecting previously unselected package libjpeg-turbo8:amd64. 112s Preparing to unpack .../044-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 112s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 112s Selecting previously unselected package libjpeg8:amd64. 112s Preparing to unpack .../045-libjpeg8_8c-2ubuntu11_amd64.deb ... 112s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 112s Selecting previously unselected package libjs-bootstrap. 112s Preparing to unpack .../046-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 112s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 112s Selecting previously unselected package libjs-popper.js. 112s Preparing to unpack .../047-libjs-popper.js_1.16.1+ds-6_all.deb ... 112s Unpacking libjs-popper.js (1.16.1+ds-6) ... 112s Selecting previously unselected package libjs-bootstrap4. 112s Preparing to unpack .../048-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 112s Unpacking 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package libjs-prettify. 113s Preparing to unpack .../059-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 113s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 113s Selecting previously unselected package liblapack3:amd64. 113s Preparing to unpack .../060-liblapack3_3.12.0-4_amd64.deb ... 113s Unpacking liblapack3:amd64 (3.12.0-4) ... 113s Selecting previously unselected package liblerc4:amd64. 113s Preparing to unpack .../061-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 113s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 113s Selecting previously unselected package liblua5.4-0:amd64. 113s Preparing to unpack .../062-liblua5.4-0_5.4.7-1_amd64.deb ... 113s Unpacking liblua5.4-0:amd64 (5.4.7-1) ... 113s Selecting previously unselected package libthai-data. 113s Preparing to unpack .../063-libthai-data_0.1.29-2build1_all.deb ... 113s Unpacking libthai-data (0.1.29-2build1) ... 113s Selecting previously unselected package libthai0:amd64. 113s Preparing to unpack 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113s Preparing to unpack .../075-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 113s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 113s Selecting previously unselected package libxft2:amd64. 113s Preparing to unpack .../076-libxft2_2.3.6-1build1_amd64.deb ... 113s Unpacking libxft2:amd64 (2.3.6-1build1) ... 114s Selecting previously unselected package libxss1:amd64. 114s Preparing to unpack .../077-libxss1_1%3a1.2.3-1build3_amd64.deb ... 114s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 114s Selecting previously unselected package libtk8.6:amd64. 114s Preparing to unpack .../078-libtk8.6_8.6.16-1_amd64.deb ... 114s Unpacking libtk8.6:amd64 (8.6.16-1) ... 114s Selecting previously unselected package libxt6t64:amd64. 114s Preparing to unpack .../079-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 114s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 114s Selecting previously unselected package zip. 114s Preparing to unpack .../080-zip_3.0-14ubuntu1_amd64.deb ... 114s Unpacking zip (3.0-14ubuntu1) ... 114s Selecting previously unselected package unzip. 114s Preparing to unpack .../081-unzip_6.0-28ubuntu6_amd64.deb ... 114s Unpacking unzip (6.0-28ubuntu6) ... 114s Selecting previously unselected package xdg-utils. 114s Preparing to unpack .../082-xdg-utils_1.2.1-0ubuntu1_all.deb ... 114s Unpacking xdg-utils (1.2.1-0ubuntu1) ... 114s Selecting previously unselected package r-base-core. 114s Preparing to unpack .../083-r-base-core_4.4.2-1build1_amd64.deb ... 114s Unpacking r-base-core (4.4.2-1build1) ... 114s Selecting previously unselected package r-cran-littler. 114s Preparing to unpack .../084-r-cran-littler_0.3.20-2_amd64.deb ... 114s Unpacking r-cran-littler (0.3.20-2) ... 114s Selecting previously unselected package littler. 114s Preparing to unpack .../085-littler_0.3.20-2_all.deb ... 114s Unpacking littler (0.3.20-2) ... 114s Selecting previously unselected package node-bootstrap-sass. 114s Preparing to unpack .../086-node-bootstrap-sass_3.4.3-2_all.deb 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r-bioc-biobase. 115s Preparing to unpack .../092-r-bioc-biobase_2.66.0-2_amd64.deb ... 115s Unpacking r-bioc-biobase (2.66.0-2) ... 115s Selecting previously unselected package r-bioc-s4vectors. 115s Preparing to unpack .../093-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 115s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 115s Selecting previously unselected package r-bioc-biocio. 115s Preparing to unpack .../094-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 115s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 115s Selecting previously unselected package r-cran-formatr. 115s Preparing to unpack .../095-r-cran-formatr_1.14-2_all.deb ... 115s Unpacking r-cran-formatr (1.14-2) ... 115s Selecting previously unselected package r-cran-lambda.r. 115s Preparing to unpack .../096-r-cran-lambda.r_1.2.4-2build1_all.deb ... 115s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 115s Selecting previously unselected package r-cran-futile.options. 115s Preparing to unpack .../097-r-cran-futile.options_1.0.1-3build1_all.deb ... 115s Unpacking r-cran-futile.options (1.0.1-3build1) ... 115s Selecting previously unselected package r-cran-futile.logger. 115s Preparing to unpack .../098-r-cran-futile.logger_1.4.3-4build1_all.deb ... 115s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 115s Selecting previously unselected package r-cran-snow. 115s Preparing to unpack .../099-r-cran-snow_1%3a0.4.4-2_all.deb ... 115s Unpacking r-cran-snow (1:0.4.4-2) ... 115s Selecting previously unselected package r-cran-codetools. 115s Preparing to unpack .../100-r-cran-codetools_0.2-20-1_all.deb ... 115s Unpacking r-cran-codetools (0.2-20-1) ... 115s Selecting previously unselected package r-cran-bh. 115s Preparing to unpack .../101-r-cran-bh_1.84.0-1_all.deb ... 115s Unpacking r-cran-bh (1.84.0-1) ... 115s Selecting previously unselected package r-cran-cpp11. 115s Preparing to unpack .../102-r-cran-cpp11_0.5.0-1_all.deb ... 115s Unpacking r-cran-cpp11 (0.5.0-1) ... 115s Selecting previously unselected package r-bioc-biocparallel. 115s Preparing to unpack .../103-r-bioc-biocparallel_1.40.0-2_amd64.deb ... 115s Unpacking r-bioc-biocparallel (1.40.0-2) ... 115s Selecting previously unselected package r-bioc-graph. 116s Preparing to unpack .../104-r-bioc-graph_1.84.1-1_amd64.deb ... 116s Unpacking r-bioc-graph (1.84.1-1) ... 116s Selecting previously unselected package r-bioc-rbgl. 116s Preparing to unpack .../105-r-bioc-rbgl_1.82.0+dfsg-2_amd64.deb ... 116s Unpacking r-bioc-rbgl (1.82.0+dfsg-2) ... 116s Selecting previously unselected package r-cran-xml. 116s Preparing to unpack .../106-r-cran-xml_3.99-0.18-1_amd64.deb ... 116s Unpacking r-cran-xml (3.99-0.18-1) ... 116s Selecting previously unselected package r-cran-bitops. 116s Preparing to unpack .../107-r-cran-bitops_1.0-8-1_amd64.deb ... 116s Unpacking r-cran-bitops (1.0-8-1) ... 116s Selecting previously unselected package r-cran-rcurl. 116s Preparing to unpack .../108-r-cran-rcurl_1.98-1.16+dfsg-1_amd64.deb ... 116s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 116s Selecting previously unselected package r-cran-runit. 116s Preparing to unpack .../109-r-cran-runit_0.4.33-1_all.deb ... 116s Unpacking r-cran-runit (0.4.33-1) ... 116s Selecting previously unselected package r-cran-biocmanager. 116s Preparing to unpack .../110-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 116s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 116s Selecting previously unselected package r-bioc-biocviews. 116s Preparing to unpack .../111-r-bioc-biocviews_1.74.0-2_all.deb ... 116s Unpacking r-bioc-biocviews (1.74.0-2) ... 116s Selecting previously unselected package r-bioc-iranges. 116s Preparing to unpack .../112-r-bioc-iranges_2.40.1-2_amd64.deb ... 116s Unpacking r-bioc-iranges (2.40.1-2) ... 116s Selecting previously unselected package zlib1g-dev:amd64. 116s Preparing to unpack .../113-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 116s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 116s Selecting previously unselected package r-bioc-zlibbioc. 116s Preparing to unpack .../114-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 116s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 116s Selecting previously unselected package r-bioc-xvector. 116s Preparing to unpack .../115-r-bioc-xvector_0.46.0-2_amd64.deb ... 116s Unpacking r-bioc-xvector (0.46.0-2) ... 116s Selecting previously unselected package r-cran-curl. 116s Preparing to unpack .../116-r-cran-curl_5.2.3+dfsg-1ubuntu1_amd64.deb ... 116s Unpacking r-cran-curl (5.2.3+dfsg-1ubuntu1) ... 116s Selecting previously unselected package r-cran-jsonlite. 116s Preparing to unpack .../117-r-cran-jsonlite_1.8.9+dfsg-1_amd64.deb ... 116s Unpacking r-cran-jsonlite (1.8.9+dfsg-1) ... 116s Selecting previously unselected package r-cran-mime. 116s Preparing to unpack .../118-r-cran-mime_0.12-2_amd64.deb ... 116s Unpacking r-cran-mime (0.12-2) ... 116s Selecting previously unselected package r-cran-sys. 116s Preparing to unpack .../119-r-cran-sys_3.4.3-1_amd64.deb ... 116s Unpacking r-cran-sys (3.4.3-1) ... 116s Selecting previously unselected package r-cran-askpass. 116s Preparing to unpack .../120-r-cran-askpass_1.2.1-1_amd64.deb ... 116s Unpacking r-cran-askpass (1.2.1-1) ... 116s Selecting previously unselected package r-cran-openssl. 116s Preparing to unpack .../121-r-cran-openssl_2.2.0+dfsg-1_amd64.deb ... 116s Unpacking r-cran-openssl (2.2.0+dfsg-1) ... 116s Selecting previously unselected package r-cran-r6. 116s Preparing to unpack .../122-r-cran-r6_2.5.1-1_all.deb ... 116s Unpacking r-cran-r6 (2.5.1-1) ... 116s Selecting previously unselected package r-cran-httr. 116s Preparing to unpack .../123-r-cran-httr_1.4.7+dfsg-1_all.deb ... 116s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 116s Selecting previously unselected package r-bioc-ucsc.utils. 116s Preparing to unpack .../124-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 116s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 116s Selecting previously unselected package r-bioc-genomeinfodbdata. 116s Preparing to unpack .../125-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 116s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 116s Selecting previously unselected package r-bioc-genomeinfodb. 116s Preparing to unpack .../126-r-bioc-genomeinfodb_1.42.1+dfsg-2_all.deb ... 116s Unpacking r-bioc-genomeinfodb (1.42.1+dfsg-2) ... 116s Selecting previously unselected package r-cran-crayon. 116s Preparing to unpack .../127-r-cran-crayon_1.5.2-1_all.deb ... 116s Unpacking r-cran-crayon (1.5.2-1) ... 117s Selecting previously unselected package r-bioc-biostrings. 117s Preparing to unpack .../128-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 117s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 117s Selecting previously unselected package r-cran-lattice. 117s Preparing to unpack .../129-r-cran-lattice_0.22-6-1_amd64.deb ... 117s Unpacking r-cran-lattice (0.22-6-1) ... 117s Selecting previously unselected package r-cran-matrix. 117s Preparing to unpack .../130-r-cran-matrix_1.7-1-1_amd64.deb ... 117s Unpacking r-cran-matrix (1.7-1-1) ... 117s Selecting previously unselected package r-cran-matrixstats. 117s Preparing to unpack .../131-r-cran-matrixstats_1.4.1-1_amd64.deb ... 117s Unpacking r-cran-matrixstats (1.4.1-1) ... 117s Selecting previously unselected package r-bioc-matrixgenerics. 117s Preparing to unpack .../132-r-bioc-matrixgenerics_1.18.0-2_all.deb ... 117s Unpacking r-bioc-matrixgenerics (1.18.0-2) ... 117s Selecting previously unselected package r-cran-abind. 117s Preparing to unpack .../133-r-cran-abind_1.4-8-1_all.deb ... 117s Unpacking r-cran-abind (1.4-8-1) ... 117s Selecting previously unselected package r-bioc-s4arrays. 117s Preparing to unpack .../134-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ... 117s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 117s Selecting previously unselected package r-bioc-sparsearray. 117s Preparing to unpack .../135-r-bioc-sparsearray_1.6.0+dfsg-2_amd64.deb ... 117s Unpacking r-bioc-sparsearray (1.6.0+dfsg-2) ... 117s Selecting previously unselected package r-bioc-delayedarray. 117s Preparing to unpack .../136-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ... 117s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 117s Selecting previously unselected package r-bioc-genomicranges. 117s Preparing to unpack .../137-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ... 117s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 117s Selecting previously unselected package r-bioc-summarizedexperiment. 117s Preparing to unpack .../138-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 117s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 117s Selecting previously unselected package r-cran-locfit. 117s Preparing to unpack .../139-r-cran-locfit_1.5-9.10-1_amd64.deb ... 117s Unpacking r-cran-locfit (1.5-9.10-1) ... 117s Selecting previously unselected package r-cran-cli. 117s Preparing to unpack .../140-r-cran-cli_3.6.3-1_amd64.deb ... 117s Unpacking r-cran-cli (3.6.3-1) ... 117s Selecting previously unselected package r-cran-glue. 117s Preparing to unpack .../141-r-cran-glue_1.8.0-1_amd64.deb ... 117s Unpacking r-cran-glue (1.8.0-1) ... 117s Selecting previously unselected package r-cran-rlang. 117s Preparing to unpack .../142-r-cran-rlang_1.1.4-1_amd64.deb ... 117s Unpacking r-cran-rlang (1.1.4-1) ... 117s Selecting previously unselected package r-cran-lifecycle. 117s Preparing to unpack .../143-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 117s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 117s Selecting previously unselected package r-cran-gtable. 117s Preparing to unpack .../144-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 117s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 117s Selecting previously unselected package r-cran-isoband. 117s Preparing to unpack .../145-r-cran-isoband_0.2.7-1_amd64.deb ... 117s Unpacking r-cran-isoband (0.2.7-1) ... 117s Selecting previously unselected package r-cran-mass. 117s Preparing to unpack .../146-r-cran-mass_7.3-64-1_amd64.deb ... 117s Unpacking r-cran-mass (7.3-64-1) ... 118s Selecting previously unselected package r-cran-nlme. 118s Preparing to unpack .../147-r-cran-nlme_3.1.166-1_amd64.deb ... 118s Unpacking r-cran-nlme (3.1.166-1) ... 118s Selecting previously unselected package r-cran-mgcv. 118s Preparing to unpack .../148-r-cran-mgcv_1.9-1-1_amd64.deb ... 118s Unpacking r-cran-mgcv (1.9-1-1) ... 118s Selecting previously unselected package r-cran-farver. 118s Preparing to unpack .../149-r-cran-farver_2.1.2-1_amd64.deb ... 118s Unpacking r-cran-farver (2.1.2-1) ... 118s Selecting previously unselected package r-cran-labeling. 118s Preparing to unpack .../150-r-cran-labeling_0.4.3-1_all.deb ... 118s Unpacking r-cran-labeling (0.4.3-1) ... 118s Selecting previously unselected package r-cran-colorspace. 118s Preparing to unpack .../151-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ... 118s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 118s Selecting previously unselected package r-cran-munsell. 118s Preparing to unpack .../152-r-cran-munsell_0.5.1-1_all.deb ... 118s Unpacking r-cran-munsell (0.5.1-1) ... 118s Selecting previously unselected package r-cran-rcolorbrewer. 118s Preparing to unpack .../153-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 118s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 118s Selecting previously unselected package r-cran-viridislite. 118s Preparing to unpack .../154-r-cran-viridislite_0.4.2-2_all.deb ... 118s Unpacking r-cran-viridislite (0.4.2-2) ... 118s Selecting previously unselected package r-cran-scales. 118s Preparing to unpack .../155-r-cran-scales_1.3.0-1_all.deb ... 118s Unpacking r-cran-scales (1.3.0-1) ... 118s Selecting previously unselected package r-cran-fansi. 118s Preparing to unpack .../156-r-cran-fansi_1.0.5-1_amd64.deb ... 118s Unpacking r-cran-fansi (1.0.5-1) ... 118s Selecting previously unselected package r-cran-magrittr. 118s Preparing to unpack .../157-r-cran-magrittr_2.0.3-1_amd64.deb ... 118s Unpacking r-cran-magrittr (2.0.3-1) ... 118s Selecting previously unselected package r-cran-utf8. 118s Preparing to unpack .../158-r-cran-utf8_1.2.4-1_amd64.deb ... 118s Unpacking r-cran-utf8 (1.2.4-1) ... 118s Selecting previously unselected package r-cran-vctrs. 118s Preparing to unpack .../159-r-cran-vctrs_0.6.5-1_amd64.deb ... 118s Unpacking r-cran-vctrs (0.6.5-1) ... 118s Selecting previously unselected package r-cran-pillar. 118s Preparing to unpack .../160-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 118s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 118s Selecting previously unselected package r-cran-pkgconfig. 118s Preparing to unpack .../161-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 118s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 118s Selecting previously unselected package r-cran-tibble. 118s Preparing to unpack .../162-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 118s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 118s Selecting previously unselected package r-cran-withr. 118s Preparing to unpack .../163-r-cran-withr_3.0.2+dfsg-1_all.deb ... 118s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 118s Selecting previously unselected package r-cran-ggplot2. 118s Preparing to unpack .../164-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 118s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 118s Selecting previously unselected package r-cran-pkgkitten. 118s Preparing to unpack .../165-r-cran-pkgkitten_0.2.4-1_all.deb ... 118s Unpacking r-cran-pkgkitten (0.2.4-1) ... 118s Selecting previously unselected package r-cran-rcpp. 118s Preparing to unpack .../166-r-cran-rcpp_1.0.14-1_amd64.deb ... 118s Unpacking r-cran-rcpp (1.0.14-1) ... 118s Selecting previously unselected package r-cran-rcpparmadillo. 118s Preparing to unpack .../167-r-cran-rcpparmadillo_14.2.2-1-1_amd64.deb ... 118s Unpacking r-cran-rcpparmadillo (14.2.2-1-1) ... 119s Selecting previously unselected package r-bioc-deseq2. 119s Preparing to unpack .../168-r-bioc-deseq2_1.46.0+dfsg-2_amd64.deb ... 119s Unpacking r-bioc-deseq2 (1.46.0+dfsg-2) ... 119s Selecting previously unselected package r-bioc-rhtslib. 119s Preparing to unpack .../169-r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb ... 119s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 119s Selecting previously unselected package r-bioc-rsamtools. 119s Preparing to unpack .../170-r-bioc-rsamtools_2.22.0+dfsg-2_amd64.deb ... 119s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 119s Selecting previously unselected package r-bioc-genomicalignments. 119s Preparing to unpack .../171-r-bioc-genomicalignments_1.42.0-2_amd64.deb ... 119s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 119s Selecting previously unselected package r-bioc-hsmmsinglecell. 119s Preparing to unpack .../172-r-bioc-hsmmsinglecell_1.26.0-2_all.deb ... 119s Unpacking r-bioc-hsmmsinglecell (1.26.0-2) ... 119s Selecting previously unselected package r-cran-statmod. 119s Preparing to unpack .../173-r-cran-statmod_1.5.0-1_amd64.deb ... 119s Unpacking r-cran-statmod (1.5.0-1) ... 119s Selecting previously unselected package r-bioc-limma. 119s Preparing to unpack .../174-r-bioc-limma_3.62.2+dfsg-1_amd64.deb ... 119s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 119s Selecting previously unselected package r-cran-vgam. 119s Preparing to unpack .../175-r-cran-vgam_1.1-11-1_amd64.deb ... 119s Unpacking r-cran-vgam (1.1-11-1) ... 119s Selecting previously unselected package r-cran-irlba. 119s Preparing to unpack .../176-r-cran-irlba_2.3.5.1-4_amd64.deb ... 119s Unpacking r-cran-irlba (2.3.5.1-4) ... 119s Selecting previously unselected package r-cran-rcppeigen. 119s Preparing to unpack .../177-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 119s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 119s Selecting previously unselected package r-cran-ddrtree. 119s Preparing to unpack .../178-r-cran-ddrtree_0.1.5-2_amd64.deb ... 119s Unpacking r-cran-ddrtree (0.1.5-2) ... 119s Selecting previously unselected package r-cran-igraph. 119s Preparing to unpack .../179-r-cran-igraph_2.0.3-1_amd64.deb ... 119s Unpacking r-cran-igraph (2.0.3-1) ... 119s Selecting previously unselected package r-cran-plyr. 119s Preparing to unpack .../180-r-cran-plyr_1.8.9-1_amd64.deb ... 119s Unpacking r-cran-plyr (1.8.9-1) ... 119s Selecting previously unselected package r-cran-cluster. 119s Preparing to unpack .../181-r-cran-cluster_2.1.8-1_amd64.deb ... 119s Unpacking r-cran-cluster (2.1.8-1) ... 119s Selecting previously unselected package r-cran-combinat. 119s Preparing to unpack .../182-r-cran-combinat_0.0-8-7build1_all.deb ... 119s Unpacking r-cran-combinat (0.0-8-7build1) ... 120s Selecting previously unselected package r-cran-fastica. 120s Preparing to unpack .../183-r-cran-fastica_1.2-7-1_amd64.deb ... 120s Unpacking r-cran-fastica (1.2-7-1) ... 120s Selecting previously unselected package r-cran-rtsne. 120s Preparing to unpack .../184-r-cran-rtsne_0.17-1_amd64.deb ... 120s Unpacking r-cran-rtsne (0.17-1) ... 120s Selecting previously unselected package r-cran-stringi. 120s Preparing to unpack .../185-r-cran-stringi_1.8.4-1build1_amd64.deb ... 120s Unpacking r-cran-stringi (1.8.4-1build1) ... 120s Selecting previously unselected package r-cran-stringr. 120s Preparing to unpack .../186-r-cran-stringr_1.5.1-1_all.deb ... 120s Unpacking r-cran-stringr (1.5.1-1) ... 120s Selecting previously unselected package r-cran-reshape2. 120s Preparing to unpack .../187-r-cran-reshape2_1.4.4-2build1_amd64.deb ... 120s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 120s Selecting previously unselected package r-cran-leidenbase. 120s Preparing to unpack .../188-r-cran-leidenbase_0.1.27-1_amd64.deb ... 120s Unpacking r-cran-leidenbase (0.1.27-1) ... 120s Selecting previously unselected package r-cran-generics. 120s Preparing to unpack .../189-r-cran-generics_0.1.3-1_all.deb ... 120s Unpacking r-cran-generics (0.1.3-1) ... 120s Selecting previously unselected package r-cran-tidyselect. 120s Preparing to unpack .../190-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 120s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 120s Selecting previously unselected package r-cran-dplyr. 120s Preparing to unpack .../191-r-cran-dplyr_1.1.4-4_amd64.deb ... 120s Unpacking r-cran-dplyr (1.1.4-4) ... 120s Selecting previously unselected package r-cran-pheatmap. 120s Preparing to unpack .../192-r-cran-pheatmap_1.0.12-2build1_all.deb ... 120s Unpacking r-cran-pheatmap (1.0.12-2build1) ... 120s Selecting previously unselected package r-cran-proxy. 120s Preparing to unpack .../193-r-cran-proxy_0.4-27-1_amd64.deb ... 120s Unpacking r-cran-proxy (0.4-27-1) ... 120s Selecting previously unselected package r-cran-slam. 120s Preparing to unpack .../194-r-cran-slam_0.1-55-1_amd64.deb ... 120s Unpacking r-cran-slam (0.1-55-1) ... 120s Selecting previously unselected package r-cran-gridextra. 120s Preparing to unpack .../195-r-cran-gridextra_2.3-3build1_all.deb ... 120s Unpacking r-cran-gridextra (2.3-3build1) ... 120s Selecting previously unselected package r-cran-viridis. 120s Preparing to unpack .../196-r-cran-viridis_0.6.5-1_all.deb ... 120s Unpacking r-cran-viridis (0.6.5-1) ... 120s Selecting previously unselected package r-cran-rann. 120s Preparing to unpack .../197-r-cran-rann_2.6.2-1_amd64.deb ... 120s Unpacking r-cran-rann (2.6.2-1) ... 120s Selecting previously unselected package r-bioc-monocle. 120s Preparing to unpack .../198-r-bioc-monocle_2.34.0-2_amd64.deb ... 120s Unpacking r-bioc-monocle (2.34.0-2) ... 120s Selecting previously unselected package r-cran-survival. 120s Preparing to unpack .../199-r-cran-survival_3.8-3-1_amd64.deb ... 120s Unpacking r-cran-survival (3.8-3-1) ... 120s Selecting previously unselected package r-bioc-multtest. 120s Preparing to unpack .../200-r-bioc-multtest_2.62.0-2_amd64.deb ... 120s Unpacking r-bioc-multtest (2.62.0-2) ... 120s Selecting previously unselected package r-cran-rjson. 120s Preparing to unpack .../201-r-cran-rjson_0.2.23-1_amd64.deb ... 120s Unpacking r-cran-rjson (0.2.23-1) ... 120s Selecting previously unselected package r-cran-yaml. 120s Preparing to unpack .../202-r-cran-yaml_2.3.10-1_amd64.deb ... 120s Unpacking r-cran-yaml (2.3.10-1) ... 120s Selecting previously unselected package r-cran-restfulr. 120s Preparing to unpack .../203-r-cran-restfulr_0.0.15-1_amd64.deb ... 120s Unpacking r-cran-restfulr (0.0.15-1) ... 120s Selecting previously unselected package r-bioc-rtracklayer. 120s Preparing to unpack .../204-r-bioc-rtracklayer_1.66.0-2_amd64.deb ... 120s Unpacking r-bioc-rtracklayer (1.66.0-2) ... 120s Selecting previously unselected package r-bioc-singlecellexperiment. 120s Preparing to unpack .../205-r-bioc-singlecellexperiment_1.28.1+ds-2_all.deb ... 120s Unpacking r-bioc-singlecellexperiment (1.28.1+ds-2) ... 120s Selecting previously unselected package r-cran-digest. 120s Preparing to unpack .../206-r-cran-digest_0.6.37-1_amd64.deb ... 120s Unpacking r-cran-digest (0.6.37-1) ... 121s Selecting previously unselected package r-cran-ape. 121s Preparing to unpack .../207-r-cran-ape_5.8-1_amd64.deb ... 121s Unpacking r-cran-ape (5.8-1) ... 121s Selecting previously unselected package r-cran-base64enc. 121s Preparing to unpack .../208-r-cran-base64enc_0.1-3-3_amd64.deb ... 121s Unpacking r-cran-base64enc (0.1-3-3) ... 121s Selecting previously unselected package r-cran-beeswarm. 121s Preparing to unpack .../209-r-cran-beeswarm_0.4.0-1_amd64.deb ... 121s Unpacking r-cran-beeswarm (0.4.0-1) ... 121s Selecting previously unselected package r-cran-bit. 121s Preparing to unpack .../210-r-cran-bit_4.0.5-1_amd64.deb ... 121s Unpacking r-cran-bit (4.0.5-1) ... 121s Selecting previously unselected package r-cran-bit64. 121s Preparing to unpack .../211-r-cran-bit64_4.0.5-1_amd64.deb ... 121s Unpacking r-cran-bit64 (4.0.5-1) ... 121s Selecting previously unselected package r-cran-brio. 121s Preparing to unpack .../212-r-cran-brio_1.1.5-1_amd64.deb ... 121s Unpacking r-cran-brio (1.1.5-1) ... 121s Selecting previously unselected package r-cran-fastmap. 121s Preparing to unpack .../213-r-cran-fastmap_1.2.0-1_amd64.deb ... 121s Unpacking r-cran-fastmap (1.2.0-1) ... 121s Selecting previously unselected package r-cran-cachem. 121s Preparing to unpack .../214-r-cran-cachem_1.1.0-1_amd64.deb ... 121s Unpacking r-cran-cachem (1.1.0-1) ... 121s Selecting previously unselected package r-cran-htmltools. 121s Preparing to unpack .../215-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 121s Unpacking r-cran-htmltools (0.5.8.1-1) ... 121s Selecting previously unselected package r-cran-jquerylib. 121s Preparing to unpack .../216-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 121s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 121s Selecting previously unselected package r-cran-memoise. 121s Preparing to unpack .../217-r-cran-memoise_2.0.1-1_all.deb ... 121s Unpacking r-cran-memoise (2.0.1-1) ... 121s Selecting previously unselected package r-cran-fs. 121s Preparing to unpack .../218-r-cran-fs_1.6.4+dfsg-1_amd64.deb ... 121s Unpacking r-cran-fs (1.6.4+dfsg-1) ... 121s Selecting previously unselected package r-cran-rappdirs. 121s Preparing to unpack .../219-r-cran-rappdirs_0.3.3-1_amd64.deb ... 121s Unpacking r-cran-rappdirs (0.3.3-1) ... 121s Selecting previously unselected package r-cran-sass. 121s Preparing to unpack .../220-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 121s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 121s Selecting previously unselected package r-cran-bslib. 121s Preparing to unpack .../221-r-cran-bslib_0.7.0+dfsg-1_all.deb ... 121s Unpacking r-cran-bslib (0.7.0+dfsg-1) ... 121s Selecting previously unselected package r-cran-cairo. 121s Preparing to unpack .../222-r-cran-cairo_1.6-2-1_amd64.deb ... 121s Unpacking r-cran-cairo (1.6-2-1) ... 121s Selecting previously unselected package r-cran-ps. 121s Preparing to unpack .../223-r-cran-ps_1.8.0-1_amd64.deb ... 121s Unpacking r-cran-ps (1.8.0-1) ... 121s Selecting previously unselected package r-cran-processx. 121s Preparing to unpack .../224-r-cran-processx_3.8.4-1_amd64.deb ... 121s Unpacking r-cran-processx (3.8.4-1) ... 121s Selecting previously unselected package r-cran-callr. 121s Preparing to unpack .../225-r-cran-callr_3.7.6-1_all.deb ... 121s Unpacking r-cran-callr (3.7.6-1) ... 121s Selecting previously unselected package r-cran-class. 121s Preparing to unpack .../226-r-cran-class_7.3-23-1_amd64.deb ... 121s Unpacking r-cran-class (7.3-23-1) ... 121s Selecting previously unselected package r-cran-e1071. 121s Preparing to unpack .../227-r-cran-e1071_1.7-16-1_amd64.deb ... 121s Unpacking r-cran-e1071 (1.7-16-1) ... 121s Selecting previously unselected package r-cran-iterators. 121s Preparing to unpack .../228-r-cran-iterators_1.0.14-1_all.deb ... 121s Unpacking r-cran-iterators (1.0.14-1) ... 121s Selecting previously unselected package r-cran-foreach. 121s Preparing to unpack .../229-r-cran-foreach_1.5.2-1_all.deb ... 121s Unpacking r-cran-foreach (1.5.2-1) ... 121s Selecting previously unselected package r-cran-data.table. 121s Preparing to unpack .../230-r-cran-data.table_1.16.4+dfsg-1_amd64.deb ... 121s Unpacking r-cran-data.table (1.16.4+dfsg-1) ... 122s Selecting previously unselected package r-cran-modelmetrics. 122s Preparing to unpack .../231-r-cran-modelmetrics_1.2.2.2-1build1_amd64.deb ... 122s Unpacking r-cran-modelmetrics (1.2.2.2-1build1) ... 122s Selecting previously unselected package r-cran-proc. 122s Preparing to unpack .../232-r-cran-proc_1.18.5-1_amd64.deb ... 122s Unpacking r-cran-proc (1.18.5-1) ... 122s Selecting previously unselected package r-cran-tzdb. 122s Preparing to unpack .../233-r-cran-tzdb_0.4.0-2_amd64.deb ... 122s Unpacking r-cran-tzdb (0.4.0-2) ... 122s Selecting previously unselected package r-cran-clock. 122s Preparing to unpack .../234-r-cran-clock_0.7.1-1_amd64.deb ... 122s Unpacking r-cran-clock (0.7.1-1) ... 122s Selecting previously unselected package r-cran-gower. 122s Preparing to unpack .../235-r-cran-gower_1.0.1-1_amd64.deb ... 122s Unpacking r-cran-gower (1.0.1-1) ... 122s Selecting previously unselected package r-cran-hardhat. 122s Preparing to unpack .../236-r-cran-hardhat_1.4.0+dfsg-1_all.deb ... 122s Unpacking r-cran-hardhat (1.4.0+dfsg-1) ... 122s Selecting previously unselected package r-cran-rpart. 122s Preparing to unpack .../237-r-cran-rpart_4.1.24-1_amd64.deb ... 122s Unpacking r-cran-rpart (4.1.24-1) ... 122s Selecting previously unselected package r-cran-nnet. 122s Preparing to unpack .../238-r-cran-nnet_7.3-20-1_amd64.deb ... 122s Unpacking r-cran-nnet (7.3-20-1) ... 122s Selecting previously unselected package r-cran-shape. 122s Preparing to unpack .../239-r-cran-shape_1.4.6.1-1_all.deb ... 122s Unpacking r-cran-shape (1.4.6.1-1) ... 122s Selecting previously unselected package r-cran-diagram. 122s Preparing to unpack .../240-r-cran-diagram_1.6.5-2_all.deb ... 122s Unpacking r-cran-diagram (1.6.5-2) ... 122s Selecting previously unselected package r-cran-kernsmooth. 122s Preparing to unpack .../241-r-cran-kernsmooth_2.23-26-1_amd64.deb ... 122s Unpacking r-cran-kernsmooth (2.23-26-1) ... 122s Selecting previously unselected package r-cran-globals. 122s Preparing to unpack .../242-r-cran-globals_0.16.3-1_all.deb ... 122s Unpacking r-cran-globals (0.16.3-1) ... 122s Selecting previously unselected package r-cran-listenv. 122s Preparing to unpack .../243-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 122s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 122s Selecting previously unselected package r-cran-parallelly. 122s Preparing to unpack .../244-r-cran-parallelly_1.38.0-1_amd64.deb ... 122s Unpacking r-cran-parallelly (1.38.0-1) ... 122s Selecting previously unselected package r-cran-future. 122s Preparing to unpack .../245-r-cran-future_1.34.0+dfsg-1_all.deb ... 122s Unpacking r-cran-future (1.34.0+dfsg-1) ... 122s Selecting previously unselected package r-cran-future.apply. 122s Preparing to unpack .../246-r-cran-future.apply_1.11.2+dfsg-1_all.deb ... 122s Unpacking r-cran-future.apply (1.11.2+dfsg-1) ... 122s Selecting previously unselected package r-cran-numderiv. 122s Preparing to unpack .../247-r-cran-numderiv_2016.8-1.1-3_all.deb ... 122s Unpacking r-cran-numderiv (2016.8-1.1-3) ... 122s Selecting previously unselected package r-cran-progressr. 122s Preparing to unpack .../248-r-cran-progressr_0.14.0-1_all.deb ... 122s Unpacking r-cran-progressr (0.14.0-1) ... 122s Selecting previously unselected package r-cran-squarem. 122s Preparing to unpack .../249-r-cran-squarem_2021.1-1_all.deb ... 122s Unpacking r-cran-squarem (2021.1-1) ... 122s Selecting previously unselected package r-cran-lava. 122s Preparing to unpack .../250-r-cran-lava_1.7.3+dfsg-1_all.deb ... 122s Unpacking r-cran-lava (1.7.3+dfsg-1) ... 122s Selecting previously unselected package r-cran-prodlim. 122s Preparing to unpack .../251-r-cran-prodlim_2024.06.25-1_amd64.deb ... 122s Unpacking r-cran-prodlim (2024.06.25-1) ... 122s Selecting previously unselected package r-cran-ipred. 122s Preparing to unpack .../252-r-cran-ipred_0.9-15-1_amd64.deb ... 122s Unpacking r-cran-ipred (0.9-15-1) ... 122s Selecting previously unselected package r-cran-timechange. 122s Preparing to unpack .../253-r-cran-timechange_0.3.0-1_amd64.deb ... 122s Unpacking r-cran-timechange (0.3.0-1) ... 123s Selecting previously unselected package r-cran-lubridate. 123s Preparing to unpack .../254-r-cran-lubridate_1.9.3+dfsg-1_amd64.deb ... 123s Unpacking r-cran-lubridate (1.9.3+dfsg-1) ... 123s Selecting previously unselected package r-cran-purrr. 123s Preparing to unpack .../255-r-cran-purrr_1.0.2-1_amd64.deb ... 123s Unpacking r-cran-purrr (1.0.2-1) ... 123s Selecting previously unselected package r-cran-tidyr. 123s Preparing to unpack .../256-r-cran-tidyr_1.3.1-1_amd64.deb ... 123s Unpacking r-cran-tidyr (1.3.1-1) ... 123s Selecting previously unselected package r-cran-timedate. 123s Preparing to unpack .../257-r-cran-timedate_4041.110-1_amd64.deb ... 123s Unpacking r-cran-timedate (4041.110-1) ... 123s Selecting previously unselected package r-cran-recipes. 123s Preparing to unpack .../258-r-cran-recipes_1.1.0+dfsg-1_all.deb ... 123s Unpacking r-cran-recipes (1.1.0+dfsg-1) ... 123s Selecting previously unselected package r-cran-caret. 123s Preparing to unpack .../259-r-cran-caret_6.0-94+dfsg-1_amd64.deb ... 123s Unpacking r-cran-caret (6.0-94+dfsg-1) ... 123s Selecting previously unselected package r-cran-catools. 123s Preparing to unpack .../260-r-cran-catools_1.18.2-1_amd64.deb ... 123s Unpacking r-cran-catools (1.18.2-1) ... 123s Selecting previously unselected package r-cran-evaluate. 123s Preparing to unpack .../261-r-cran-evaluate_1.0.0-1_all.deb ... 123s Unpacking r-cran-evaluate (1.0.0-1) ... 123s Selecting previously unselected package r-cran-xfun. 123s Preparing to unpack .../262-r-cran-xfun_0.49+dfsg-1_amd64.deb ... 123s Unpacking r-cran-xfun (0.49+dfsg-1) ... 123s Selecting previously unselected package r-cran-highr. 123s Preparing to unpack .../263-r-cran-highr_0.11+dfsg-1_all.deb ... 123s Unpacking r-cran-highr (0.11+dfsg-1) ... 123s Selecting previously unselected package libjs-mathjax. 123s Preparing to unpack .../264-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 123s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 124s Selecting previously unselected package r-cran-knitr. 124s Preparing to unpack .../265-r-cran-knitr_1.49+dfsg-1_all.deb ... 124s Unpacking r-cran-knitr (1.49+dfsg-1) ... 124s Selecting previously unselected package r-cran-fontawesome. 124s Preparing to unpack .../266-r-cran-fontawesome_0.5.2-1_all.deb ... 124s Unpacking r-cran-fontawesome (0.5.2-1) ... 124s Selecting previously unselected package r-cran-tinytex. 124s Preparing to unpack .../267-r-cran-tinytex_0.53-1_all.deb ... 124s Unpacking r-cran-tinytex (0.53-1) ... 124s Selecting previously unselected package libjs-modernizr. 124s Preparing to unpack .../268-libjs-modernizr_3.13.0-0.1_all.deb ... 124s Unpacking libjs-modernizr (3.13.0-0.1) ... 124s Selecting previously unselected package r-cran-later. 124s Preparing to unpack .../269-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 124s Unpacking r-cran-later (1.3.2+dfsg-1) ... 124s Selecting previously unselected package r-cran-promises. 124s Preparing to unpack .../270-r-cran-promises_1.3.0+dfsg-1_amd64.deb ... 124s Unpacking r-cran-promises (1.3.0+dfsg-1) ... 124s Selecting previously unselected package r-cran-httpuv. 124s Preparing to unpack .../271-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 124s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 124s Selecting previously unselected package r-cran-xtable. 124s Preparing to unpack .../272-r-cran-xtable_1%3a1.8-4-2_all.deb ... 124s Unpacking r-cran-xtable (1:1.8-4-2) ... 124s Selecting previously unselected package r-cran-sourcetools. 124s Preparing to unpack .../273-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 124s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 124s Selecting previously unselected package r-cran-commonmark. 124s Preparing to unpack .../274-r-cran-commonmark_1.9.2-2_amd64.deb ... 124s Unpacking r-cran-commonmark (1.9.2-2) ... 124s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 124s Preparing to unpack .../275-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 124s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 124s Selecting previously unselected package r-cran-shiny. 124s Preparing to unpack .../276-r-cran-shiny_1.9.1+dfsg-1_all.deb ... 124s Unpacking r-cran-shiny (1.9.1+dfsg-1) ... 124s Selecting previously unselected package r-cran-rmarkdown. 124s Preparing to unpack .../277-r-cran-rmarkdown_2.28+dfsg-1_all.deb ... 124s Unpacking r-cran-rmarkdown (2.28+dfsg-1) ... 124s Selecting previously unselected package r-cran-htmlwidgets. 124s Preparing to unpack .../278-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 124s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 124s Selecting previously unselected package r-cran-miniui. 124s Preparing to unpack .../279-r-cran-miniui_0.1.1.1-3build1_all.deb ... 124s Unpacking r-cran-miniui (0.1.1.1-3build1) ... 124s Selecting previously unselected package r-cran-shinyjs. 124s Preparing to unpack .../280-r-cran-shinyjs_2.1.0-1_all.deb ... 124s Unpacking r-cran-shinyjs (2.1.0-1) ... 124s Selecting previously unselected package r-cran-colourpicker. 124s Preparing to unpack .../281-r-cran-colourpicker_1.3.0+dfsg-1_all.deb ... 124s Unpacking r-cran-colourpicker (1.3.0+dfsg-1) ... 125s Selecting previously unselected package r-cran-conquer. 125s Preparing to unpack .../282-r-cran-conquer_1.3.3-1_amd64.deb ... 125s Unpacking r-cran-conquer (1.3.3-1) ... 125s Selecting previously unselected package r-cran-cowplot. 125s Preparing to unpack .../283-r-cran-cowplot_1.1.3+dfsg-1_all.deb ... 125s Unpacking r-cran-cowplot (1.1.3+dfsg-1) ... 125s Selecting previously unselected package r-cran-lazyeval. 125s Preparing to unpack .../284-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 125s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 125s Selecting previously unselected package r-cran-crosstalk. 125s Preparing to unpack .../285-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 125s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 125s Selecting previously unselected package r-cran-deldir. 125s Preparing to unpack .../286-r-cran-deldir_2.0-4-1build1_amd64.deb ... 125s Unpacking r-cran-deldir (2.0-4-1build1) ... 125s Selecting previously unselected package r-cran-deoptimr. 125s Preparing to unpack .../287-r-cran-deoptimr_1.1-3-1-1_all.deb ... 125s Unpacking r-cran-deoptimr (1.1-3-1-1) ... 125s Selecting previously unselected package r-cran-desc. 125s Preparing to unpack .../288-r-cran-desc_1.4.3-1_all.deb ... 125s Unpacking r-cran-desc (1.4.3-1) ... 125s Selecting previously unselected package r-cran-diffobj. 125s Preparing to unpack .../289-r-cran-diffobj_0.3.5-1_amd64.deb ... 125s Unpacking r-cran-diffobj (0.3.5-1) ... 125s Selecting previously unselected package r-cran-dotcall64. 125s Preparing to unpack .../290-r-cran-dotcall64_1.1-1-1_amd64.deb ... 125s Unpacking r-cran-dotcall64 (1.1-1-1) ... 125s Selecting previously unselected package r-cran-sitmo. 125s Preparing to unpack .../291-r-cran-sitmo_2.0.2-1_amd64.deb ... 125s Unpacking r-cran-sitmo (2.0.2-1) ... 125s Selecting previously unselected package r-cran-dqrng. 125s Preparing to unpack .../292-r-cran-dqrng_0.3.2+dfsg-1_amd64.deb ... 125s Unpacking r-cran-dqrng (0.3.2+dfsg-1) ... 125s Selecting previously unselected package r-cran-fastdummies. 125s Preparing to unpack .../293-r-cran-fastdummies_1.7.4-1_all.deb ... 125s Unpacking r-cran-fastdummies (1.7.4-1) ... 125s Selecting previously unselected package r-cran-fitdistrplus. 125s Preparing to unpack .../294-r-cran-fitdistrplus_1.2-1-1_all.deb ... 125s Unpacking r-cran-fitdistrplus (1.2-1-1) ... 125s Selecting previously unselected package r-cran-fnn. 125s Preparing to unpack .../295-r-cran-fnn_1.1.4.1-1_amd64.deb ... 125s Unpacking r-cran-fnn (1.1.4.1-1) ... 125s Selecting previously unselected package r-cran-gtools. 125s Preparing to unpack .../296-r-cran-gtools_3.9.5-1_amd64.deb ... 125s Unpacking r-cran-gtools (3.9.5-1) ... 125s Selecting previously unselected package r-cran-gdata. 125s Preparing to unpack .../297-r-cran-gdata_3.0.1-1_all.deb ... 125s Unpacking r-cran-gdata (3.0.1-1) ... 125s Selecting previously unselected package r-cran-vipor. 125s Preparing to unpack .../298-r-cran-vipor_0.4.7-1_all.deb ... 125s Unpacking r-cran-vipor (0.4.7-1) ... 125s Selecting previously unselected package r-cran-ggbeeswarm. 125s Preparing to unpack .../299-r-cran-ggbeeswarm_0.7.2-1_all.deb ... 125s Unpacking r-cran-ggbeeswarm (0.7.2-1) ... 125s Selecting previously unselected package r-cran-png. 125s Preparing to unpack .../300-r-cran-png_0.1-8-1build2_amd64.deb ... 125s Unpacking r-cran-png (0.1-8-1build2) ... 125s Selecting previously unselected package r-cran-systemfonts. 125s Preparing to unpack .../301-r-cran-systemfonts_1.1.0-1_amd64.deb ... 125s Unpacking r-cran-systemfonts (1.1.0-1) ... 125s Selecting previously unselected package r-cran-textshaping. 125s Preparing to unpack .../302-r-cran-textshaping_0.3.7-2_amd64.deb ... 125s Unpacking r-cran-textshaping (0.3.7-2) ... 125s Selecting previously unselected package r-cran-ragg. 125s Preparing to unpack .../303-r-cran-ragg_1.3.3-1_amd64.deb ... 125s Unpacking r-cran-ragg (1.3.3-1) ... 125s Selecting previously unselected package r-cran-ggrastr. 125s Preparing to unpack .../304-r-cran-ggrastr_1.0.2-1_all.deb ... 125s Unpacking r-cran-ggrastr (1.0.2-1) ... 126s Selecting previously unselected package r-cran-ggrepel. 126s Preparing to unpack .../305-r-cran-ggrepel_0.9.5-2_amd64.deb ... 126s Unpacking r-cran-ggrepel (0.9.5-2) ... 126s Selecting previously unselected package r-cran-ggridges. 126s Preparing to unpack .../306-r-cran-ggridges_0.5.6-1_all.deb ... 126s Unpacking r-cran-ggridges (0.5.6-1) ... 126s Selecting previously unselected package r-cran-goftest. 126s Preparing to unpack .../307-r-cran-goftest_1.2-3-1_amd64.deb ... 126s Unpacking r-cran-goftest (1.2-3-1) ... 126s Selecting previously unselected package r-cran-gplots. 126s Preparing to unpack .../308-r-cran-gplots_3.2.0-1_all.deb ... 126s Unpacking r-cran-gplots (3.2.0-1) ... 126s Selecting previously unselected package r-cran-hdf5r. 126s Preparing to unpack .../309-r-cran-hdf5r_1.3.11+dfsg-1_amd64.deb ... 126s Unpacking r-cran-hdf5r (1.3.11+dfsg-1) ... 126s Selecting previously unselected package r-cran-rprojroot. 126s Preparing to unpack .../310-r-cran-rprojroot_2.0.4-1_all.deb ... 126s Unpacking r-cran-rprojroot (2.0.4-1) ... 126s Selecting previously unselected package r-cran-here. 126s Preparing to unpack .../311-r-cran-here_1.0.1-2_all.deb ... 126s Unpacking r-cran-here (1.0.1-2) ... 126s Selecting previously unselected package r-cran-ica. 126s Preparing to unpack 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Selecting previously unselected package r-cran-lmtest. 126s Preparing to unpack .../318-r-cran-lmtest_0.9.40-1_amd64.deb ... 126s Unpacking r-cran-lmtest (0.9.40-1) ... 126s Selecting previously unselected package r-cran-mathjaxr. 126s Preparing to unpack .../319-r-cran-mathjaxr_1.6-0-1_all.deb ... 126s Unpacking r-cran-mathjaxr (1.6-0-1) ... 126s Selecting previously unselected package r-cran-matrixmodels. 126s Preparing to unpack .../320-r-cran-matrixmodels_0.5-3-1_all.deb ... 126s Unpacking r-cran-matrixmodels (0.5-3-1) ... 126s Selecting previously unselected package r-cran-rbibutils. 126s Preparing to unpack .../321-r-cran-rbibutils_2.3-1_amd64.deb ... 126s Unpacking r-cran-rbibutils (2.3-1) ... 126s Selecting previously unselected package r-cran-rdpack. 126s Preparing to unpack .../322-r-cran-rdpack_2.6.2-1_all.deb ... 126s Unpacking r-cran-rdpack (2.6.2-1) ... 126s Selecting previously unselected package r-cran-mnormt. 126s Preparing to unpack .../323-r-cran-mnormt_2.1.1-2_amd64.deb ... 126s Unpacking r-cran-mnormt (2.1.1-2) ... 126s Selecting previously unselected package r-cran-sparsem. 126s Preparing to unpack .../324-r-cran-sparsem_1.84-2-1_amd64.deb ... 126s Unpacking r-cran-sparsem (1.84-2-1) ... 126s Selecting previously unselected package r-cran-quantreg. 126s Preparing to unpack .../325-r-cran-quantreg_5.99.1-1_amd64.deb ... 126s Unpacking r-cran-quantreg (5.99.1-1) ... 126s Selecting previously unselected package r-cran-sn. 126s Preparing to unpack .../326-r-cran-sn_2.1.1-2_all.deb ... 126s Unpacking r-cran-sn (2.1.1-2) ... 126s Selecting previously unselected package r-cran-mvtnorm. 126s Preparing to unpack .../327-r-cran-mvtnorm_1.3-3-1_amd64.deb ... 126s Unpacking r-cran-mvtnorm (1.3-3-1) ... 126s Selecting previously unselected package r-cran-tfisher. 126s Preparing to unpack .../328-r-cran-tfisher_0.2.0-3_all.deb ... 126s Unpacking r-cran-tfisher (0.2.0-3) ... 126s Selecting previously unselected package r-cran-plotrix. 126s Preparing to unpack .../329-r-cran-plotrix_3.8-4-1_all.deb ... 126s Unpacking r-cran-plotrix (3.8-4-1) ... 126s Selecting previously unselected package r-cran-th.data. 126s Preparing to unpack .../330-r-cran-th.data_1.1-2-2_all.deb ... 126s Unpacking r-cran-th.data (1.1-2-2) ... 127s Selecting previously unselected package r-cran-sandwich. 127s Preparing to unpack .../331-r-cran-sandwich_3.1-1-1_all.deb ... 127s Unpacking r-cran-sandwich (3.1-1-1) ... 127s Selecting previously unselected package r-cran-multcomp. 127s Preparing to unpack .../332-r-cran-multcomp_1.4-26-2_all.deb ... 127s Unpacking r-cran-multcomp (1.4-26-2) ... 127s Selecting previously unselected package r-cran-mutoss. 127s Preparing to unpack .../333-r-cran-mutoss_0.1-13-1_all.deb ... 127s Unpacking r-cran-mutoss (0.1-13-1) ... 127s Selecting previously unselected package r-cran-robustbase. 127s Preparing to unpack .../334-r-cran-robustbase_0.99-4-1-1_amd64.deb ... 127s Unpacking r-cran-robustbase (0.99-4-1-1) ... 127s Selecting previously unselected package r-cran-qqconf. 127s Preparing to unpack .../335-r-cran-qqconf_1.3.2+dfsg-1_amd64.deb ... 127s Unpacking r-cran-qqconf (1.3.2+dfsg-1) ... 127s Selecting previously unselected package r-cran-metap. 127s Preparing to unpack .../336-r-cran-metap_1.11-1_all.deb ... 127s Unpacking r-cran-metap (1.11-1) ... 127s Selecting previously unselected package r-cran-plotly. 127s Preparing to unpack .../337-r-cran-plotly_4.10.4+dfsg-2_all.deb ... 127s Unpacking r-cran-plotly (4.10.4+dfsg-2) ... 127s Selecting previously unselected package r-cran-segmented. 127s Preparing to unpack .../338-r-cran-segmented_2.1-3-1_all.deb ... 127s Unpacking r-cran-segmented (2.1-3-1) ... 127s Selecting previously unselected package r-cran-mixtools. 127s Preparing to unpack .../339-r-cran-mixtools_2.0.0-1_amd64.deb ... 127s Unpacking r-cran-mixtools (2.0.0-1) ... 127s Selecting previously unselected package r-cran-patchwork. 127s Preparing to unpack .../340-r-cran-patchwork_1.3.0-1_all.deb ... 127s Unpacking r-cran-patchwork (1.3.0-1) ... 127s Selecting previously unselected package r-cran-pbapply. 127s Preparing to unpack .../341-r-cran-pbapply_1.7-2-1_all.deb ... 127s Unpacking r-cran-pbapply (1.7-2-1) ... 127s Selecting previously unselected package r-cran-pkgbuild. 127s Preparing to unpack .../342-r-cran-pkgbuild_1.4.4-1_all.deb ... 127s Unpacking r-cran-pkgbuild (1.4.4-1) ... 127s Selecting previously unselected package r-cran-pkgload. 127s Preparing to unpack .../343-r-cran-pkgload_1.4.0-1_all.deb ... 127s Unpacking r-cran-pkgload (1.4.0-1) ... 127s Selecting previously unselected package r-cran-polyclip. 127s Preparing to unpack .../344-r-cran-polyclip_1.10-7-1_amd64.deb ... 127s Unpacking r-cran-polyclip (1.10-7-1) ... 127s Selecting previously unselected package r-cran-praise. 127s Preparing to unpack .../345-r-cran-praise_1.0.0-4build1_all.deb ... 127s Unpacking r-cran-praise (1.0.0-4build1) ... 127s Selecting previously unselected package r-cran-r.methodss3. 127s Preparing to unpack .../346-r-cran-r.methodss3_1.8.2-1_all.deb ... 127s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 127s Selecting previously unselected package r-cran-r.oo. 127s Preparing to unpack .../347-r-cran-r.oo_1.26.0-1_all.deb ... 127s Unpacking r-cran-r.oo (1.26.0-1) ... 127s Selecting previously unselected package r-cran-r.utils. 127s Preparing to unpack .../348-r-cran-r.utils_2.12.3-1_all.deb ... 127s Unpacking r-cran-r.utils (2.12.3-1) ... 127s Selecting previously unselected package r-cran-rcppannoy. 127s Preparing to unpack .../349-r-cran-rcppannoy_0.0.22-1_amd64.deb ... 127s Unpacking r-cran-rcppannoy (0.0.22-1) ... 128s Selecting previously unselected package r-cran-rcpphnsw. 128s Preparing to unpack .../350-r-cran-rcpphnsw_0.5.0+ds-1_amd64.deb ... 128s Unpacking r-cran-rcpphnsw (0.5.0+ds-1) ... 128s Selecting previously unselected package r-cran-rcppprogress. 128s Preparing to unpack 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r-bioc-genomicalignments (1.42.0-2) ... 132s Setting up r-cran-metap (1.11-1) ... 132s Setting up r-bioc-rtracklayer (1.66.0-2) ... 132s Setting up r-bioc-singlecellexperiment (1.28.1+ds-2) ... 132s Setting up r-cran-plotly (4.10.4+dfsg-2) ... 132s Setting up r-cran-mixtools (2.0.0-1) ... 132s Setting up r-cran-seurat (5.1.0-1) ... 132s Processing triggers for man-db (2.13.0-1) ... 133s Processing triggers for install-info (7.1.1-1) ... 133s Processing triggers for libc-bin (2.40-4ubuntu1) ... 134s autopkgtest [12:04:03]: test run-unit-test: [----------------------- 135s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 135s BEGIN TEST testthat.R 135s 135s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 135s Copyright (C) 2024 The R Foundation for Statistical Computing 135s Platform: x86_64-pc-linux-gnu 135s 135s R is free software and comes with ABSOLUTELY NO WARRANTY. 135s You are welcome to redistribute it under certain conditions. 135s Type 'license()' or 'licence()' for distribution details. 135s 135s R is a collaborative project with many contributors. 135s Type 'contributors()' for more information and 135s 'citation()' on how to cite R or R packages in publications. 135s 135s Type 'demo()' for some demos, 'help()' for on-line help, or 135s 'help.start()' for an HTML browser interface to help. 135s Type 'q()' to quit R. 135s 135s > library(testthat) 135s Loading required package: SeuratObject 135s Loading required package: sp 135s > library(Seurat) 136s ‘SeuratObject’ was built under R 4.4.1 but the current version is 136s 4.4.2; it is recomended that you reinstall ‘SeuratObject’ as the ABI 136s for R may have changed 136s ‘SeuratObject’ was built with package ‘Matrix’ 1.7.0 but the current 136s version is 1.7.1; it is recomended that you reinstall ‘SeuratObject’ as 136s the ABI for ‘Matrix’ may have changed 136s 136s Attaching package: ‘SeuratObject’ 136s 136s The following objects are masked from ‘package:base’: 136s 136s intersect, t 136s 138s Run tests for v5 assay 138s > # 138s > # # Run tests for 'v3' 138s > # message('Run tests for v3 assay') 138s > # options(Seurat.object.assay.version = 'v3') 138s > # test_check("Seurat") 138s > 138s > # Run tests for 'v5' 138s > message('Run tests for v5 assay') 138s > options(Seurat.object.assay.version = 'v5') 138s > test_check("Seurat") 139s | | | 0% | |======================================================================| 100% 186s Performing log-normalization 186s 0% 10 20 30 40 50 60 70 80 90 100% 186s [----|----|----|----|----|----|----|----|----|----| 186s **************************************************| 186s Performing log-normalization 186s 0% 10 20 30 40 50 60 70 80 90 100% 186s [----|----|----|----|----|----|----|----|----|----| 186s **************************************************| 186s Performing log-normalization 186s 0% 10 20 30 40 50 60 70 80 90 100% 186s [----|----|----|----|----|----|----|----|----|----| 186s **************************************************| 193s | | | 0% | |======================================================================| 100% 195s | | | 0% | |======================================================================| 100% 195s | | | 0% | |======================================================================| 100% 217s Performing log-normalization 217s 0% 10 20 30 40 50 60 70 80 90 100% 217s [----|----|----|----|----|----|----|----|----|----| 217s **************************************************| 217s Calculating gene variances 217s 0% 10 20 30 40 50 60 70 80 90 100% 217s [----|----|----|----|----|----|----|----|----|----| 217s **************************************************| 217s Calculating feature variances of standardized and clipped values 217s 0% 10 20 30 40 50 60 70 80 90 100% 217s [----|----|----|----|----|----|----|----|----|----| 217s **************************************************| 217s | | | 0% | |======================================================================| 100% 217s Modularity Optimizer version 1.3.0 by Ludo Waltman and Nees Jan van Eck 217s 217s Number of nodes: 80 217s Number of edges: 2045 217s 217s Running Louvain algorithm... 217s 0% 10 20 30 40 50 60 70 80 90 100% 217s [----|----|----|----|----|----|----|----|----|----| 217s **************************************************| 217s Maximum modularity in 10 random starts: -0.0613 217s Number of communities: 64 217s Elapsed time: 0 seconds 218s Performing log-normalization 218s 0% 10 20 30 40 50 60 70 80 90 100% 218s [----|----|----|----|----|----|----|----|----|----| 218s **************************************************| 218s | | | 0% | |======================================================================| 100% 218s | | | 0% | |======================================================================| 100% 219s | | | 0% | |======================================================================| 100% 220s | | | 0% | |======================================================================| 100% 221s | | | 0% | |======================================================================| 100% 221s [ FAIL 0 | WARN 210 | SKIP 32 | PASS 661 ] 221s 221s ══ Skipped tests (32) ══════════════════════════════════════════════════════════ 222s • arrow cannot be loaded (1): 'test_load_10X.R:179:3' 222s • On CRAN (29): 'test_differential_expression.R:307:3', 222s 'test_differential_expression.R:349:3', 222s 'test_differential_expression.R:446:3', 'test_dimensional_reduction.R:55:3', 222s 'test_integratedata.R:111:3', 'test_integration.R:74:3', 222s 'test_integration.R:105:3', 'test_integration.R:136:3', 222s 'test_integration.R:170:3', 'test_integration.R:202:3', 222s 'test_integration.R:234:3', 'test_integration.R:264:3', 222s 'test_integration.R:306:3', 'test_integration.R:335:3', 222s 'test_integration.R:365:3', 'test_integration5.R:38:3', 222s 'test_integration5.R:219:3', 'test_objects.R:6:3', 222s 'test_preprocessing.R:140:3', 'test_preprocessing.R:158:3', 222s 'test_preprocessing.R:433:3', 'test_preprocessing.R:554:3', 222s 'test_read_mtx.R:4:3', 'test_read_mtx.R:18:3', 'test_transferdata.R:65:3', 222s 'test_transferdata.R:88:3', 'test_transferdata.R:100:3', 222s 'test_transferdata.R:112:3', 'test_transferdata.R:128:3' 222s • sf cannot be loaded (2): 'test_spatial.R:115:3', 'test_spatial.R:266:3' 222s 222s [ FAIL 0 | WARN 210 | SKIP 32 | PASS 661 ] 222s > 222s > 222s > 222s autopkgtest [12:05:31]: test run-unit-test: -----------------------] 223s run-unit-test PASS 223s autopkgtest [12:05:32]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 223s autopkgtest [12:05:32]: test pkg-r-autopkgtest: preparing testbed 335s autopkgtest [12:07:24]: testbed dpkg architecture: amd64 335s autopkgtest [12:07:24]: testbed apt version: 2.9.18 336s autopkgtest [12:07:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup 336s autopkgtest [12:07:25]: testbed release detected to be: plucky 337s autopkgtest [12:07:26]: updating testbed package index (apt update) 337s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 337s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 337s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 337s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 337s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [177 kB] 337s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.7 kB] 337s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [877 kB] 338s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 338s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [227 kB] 338s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [330 kB] 338s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [40.1 kB] 338s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2408 B] 338s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [463 kB] 338s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [1097 kB] 338s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [25.3 kB] 338s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [4856 B] 338s Fetched 3343 kB in 1s (3482 kB/s) 338s Reading package lists... 339s + lsb_release --codename --short 339s + RELEASE=plucky 339s + cat 339s + [ plucky != trusty ] 339s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 339s Reading package lists... 339s Building dependency tree... 339s Reading state information... 339s Calculating upgrade... 339s The following packages will be upgraded: 339s libgudev-1.0-0 usb.ids 340s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 340s Need to get 239 kB of archives. 340s After this operation, 0 B of additional disk space will be used. 340s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 usb.ids all 2025.01.14-1 [223 kB] 340s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libgudev-1.0-0 amd64 1:238-6 [15.8 kB] 340s Fetched 239 kB in 0s (491 kB/s) 340s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 340s Preparing to unpack .../usb.ids_2025.01.14-1_all.deb ... 340s Unpacking usb.ids (2025.01.14-1) over (2024.12.04-1) ... 340s Preparing to unpack .../libgudev-1.0-0_1%3a238-6_amd64.deb ... 340s Unpacking libgudev-1.0-0:amd64 (1:238-6) over (1:238-5ubuntu1) ... 341s Setting up usb.ids (2025.01.14-1) ... 341s Setting up libgudev-1.0-0:amd64 (1:238-6) ... 341s Processing triggers for libc-bin (2.40-4ubuntu1) ... 341s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 341s + /usr/lib/apt/apt-helper analyze-pattern ?true 341s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove ?obsolete 341s Reading package lists... 341s Building dependency tree... 341s Reading state information... 341s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 341s + grep -q trusty /etc/lsb-release 341s + [ ! -d /usr/share/doc/unattended-upgrades ] 341s + [ ! -d /usr/share/doc/lxd ] 341s + [ ! -d /usr/share/doc/lxd-client ] 341s + [ ! -d /usr/share/doc/snapd ] 341s + type iptables 341s + cat 341s + chmod 755 /etc/rc.local 341s + . /etc/rc.local 341s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 341s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 341s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 341s + uname -m 341s + [ x86_64 = ppc64le ] 341s + [ -d /run/systemd/system ] 341s + systemd-detect-virt --quiet --vm 341s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 341s + cat 341s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 341s + echo COMPRESS=lz4 341s + sync 341s autopkgtest [12:07:30]: upgrading testbed (apt dist-upgrade and autopurge) 341s Reading package lists... 342s Building dependency tree... 342s Reading state information... 342s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 342s Starting 2 pkgProblemResolver with broken count: 0 342s Done 342s Entering ResolveByKeep 342s 342s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 343s Reading package lists... 343s Building dependency tree... 343s Reading state information... 343s Starting pkgProblemResolver with broken count: 0 343s Starting 2 pkgProblemResolver with broken count: 0 343s Done 343s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 346s Reading package lists... 346s Building dependency tree... 346s Reading state information... 346s Starting pkgProblemResolver with broken count: 10 347s Starting 2 pkgProblemResolver with broken count: 10 347s Investigating (0) r-bioc-s4vectors:amd64 < none -> 0.42.1+dfsg-2 @un puN Ib > 347s Broken r-bioc-s4vectors:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 347s Considering r-bioc-biocgenerics:amd64 45 as a solution to r-bioc-s4vectors:amd64 29 347s Re-Instated r-bioc-biocgenerics:amd64 347s Investigating (0) r-bioc-iranges:amd64 < none -> 2.38.1-1 @un puN Ib > 347s Broken r-bioc-iranges:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 347s Considering r-bioc-biocgenerics:amd64 29 as a solution to r-bioc-iranges:amd64 21 347s Investigating (0) r-bioc-genomeinfodb:amd64 < none -> 1.40.1+dfsg-1 @un puN Ib > 347s Broken r-bioc-genomeinfodb:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 347s Considering r-bioc-biocgenerics:amd64 29 as a solution to r-bioc-genomeinfodb:amd64 11 347s Broken r-bioc-genomeinfodb:amd64 Depends on r-bioc-ucsc.utils:amd64 < none | 1.0.0+ds-2 @un uH > (> 1.0.0+ds-1) 347s Considering r-bioc-ucsc.utils:amd64 0 as a solution to r-bioc-genomeinfodb:amd64 11 347s Reinst Failed because of protected r-bioc-biocgenerics:amd64 347s Considering r-bioc-ucsc.utils:amd64 0 as a solution to r-bioc-genomeinfodb:amd64 11 347s Broken r-bioc-genomeinfodb:amd64 Depends on r-bioc-genomeinfodbdata:amd64 < none | 1.2.13-2 @un uH > (>= 1.2.12) 347s Considering r-bioc-genomeinfodbdata:amd64 0 as a solution to r-bioc-genomeinfodb:amd64 11 347s Re-Instated r-bioc-genomeinfodbdata:amd64 347s Investigating (0) r-bioc-genomicranges:amd64 < none -> 1.56.2+dfsg-1 @un puN Ib > 347s Broken r-bioc-genomicranges:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 347s Considering r-bioc-biocgenerics:amd64 29 as a solution to r-bioc-genomicranges:amd64 8 347s Broken r-bioc-genomicranges:amd64 Depends on r-bioc-xvector:amd64 < none | 0.44.0-1 @un uH > (>= 0.29.2) 347s Considering r-bioc-xvector:amd64 0 as a solution to r-bioc-genomicranges:amd64 8 347s Reinst Failed because of protected r-bioc-biocgenerics:amd64 347s Considering r-bioc-xvector:amd64 0 as a solution to r-bioc-genomicranges:amd64 8 347s Investigating (0) r-bioc-biobase:amd64 < none -> 2.64.0-4 @un puN Ib > 347s Broken r-bioc-biobase:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 347s Considering r-bioc-biocgenerics:amd64 29 as a solution to r-bioc-biobase:amd64 7 347s Investigating (0) r-bioc-delayedarray:amd64 < none -> 0.30.1+dfsg-1 @un puN Ib > 347s Broken r-bioc-delayedarray:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 347s Considering r-bioc-biocgenerics:amd64 29 as a solution to r-bioc-delayedarray:amd64 4 347s Broken r-bioc-delayedarray:amd64 Depends on r-bioc-matrixgenerics:amd64 < none | 1.16.0-2 @un uH > (>= 1.16.0) 347s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-delayedarray:amd64 4 347s Reinst Failed because of protected r-bioc-biocgenerics:amd64 347s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-delayedarray:amd64 4 347s Broken r-bioc-delayedarray:amd64 Depends on r-bioc-s4arrays:amd64 < none | 1.4.1+dfsg-1 @un uH > (>= 1.4.1) 347s Considering r-bioc-s4arrays:amd64 0 as a solution to r-bioc-delayedarray:amd64 4 347s Reinst Failed because of protected r-bioc-biocgenerics:amd64 347s Considering r-bioc-s4arrays:amd64 0 as a solution to r-bioc-delayedarray:amd64 4 347s Broken r-bioc-delayedarray:amd64 Depends on r-bioc-sparsearray:amd64 < none | 1.4.8+dfsg-1 @un uH > (>= 1.4.8) 347s Considering r-bioc-sparsearray:amd64 0 as a solution to r-bioc-delayedarray:amd64 4 347s Reinst Failed because of protected r-bioc-biocgenerics:amd64 347s Considering r-bioc-sparsearray:amd64 0 as a solution to r-bioc-delayedarray:amd64 4 347s Investigating (0) r-bioc-summarizedexperiment:amd64 < none -> 1.34.0+dfsg-1 @un puN Ib > 347s Broken r-bioc-summarizedexperiment:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 347s Considering r-bioc-biocgenerics:amd64 29 as a solution to r-bioc-summarizedexperiment:amd64 3 347s Broken r-bioc-summarizedexperiment:amd64 Depends on r-bioc-matrixgenerics:amd64 < none | 1.16.0-2 @un uH > (>= 1.16.0) 347s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-summarizedexperiment:amd64 3 347s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-summarizedexperiment:amd64 3 347s Broken r-bioc-summarizedexperiment:amd64 Depends on r-bioc-s4arrays:amd64 < none | 1.4.1+dfsg-1 @un uH > (>= 1.4.1) 347s Considering r-bioc-s4arrays:amd64 0 as a solution to r-bioc-summarizedexperiment:amd64 3 347s Considering r-bioc-s4arrays:amd64 0 as a solution to r-bioc-summarizedexperiment:amd64 3 347s Investigating (0) r-bioc-rtracklayer:amd64 < none -> 1.64.0-1 @un puN Ib > 347s Broken r-bioc-rtracklayer:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 347s Considering r-bioc-biocgenerics:amd64 29 as a solution to r-bioc-rtracklayer:amd64 1 347s Broken r-bioc-rtracklayer:amd64 Depends on r-cran-xml:amd64 < none | 3.99-0.18-1 @un uH > (>= 1.98-0) 347s Considering r-cran-xml:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 347s Re-Instated r-cran-xml:amd64 347s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-xvector:amd64 < none | 0.44.0-1 @un uH > (>= 0.44.0) 347s Considering r-bioc-xvector:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 347s Considering r-bioc-xvector:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 347s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-biostrings:amd64 < none | 2.72.1+dfsg-1 @un uH > (>= 2.72.1) 347s Considering r-bioc-biostrings:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 347s Reinst Failed because of protected r-bioc-biocgenerics:amd64 347s Considering r-bioc-biostrings:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 347s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-zlibbioc:amd64 < none | 1.50.0+dfsg-2 @un uH > (>= 1.50.0) 347s Considering r-bioc-zlibbioc:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 347s Reinst Failed because of protected r-bioc-biocgenerics:amd64 347s Considering r-bioc-zlibbioc:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 347s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-rsamtools:amd64 < none | 2.20.0+dfsg-1 @un uH > (>= 2.20.0) 347s Considering r-bioc-rsamtools:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 347s Reinst Failed because of protected r-bioc-biocgenerics:amd64 347s Considering r-bioc-rsamtools:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 347s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-genomicalignments:amd64 < none | 1.40.0-1 @un uH > (>= 1.40.0) 347s Considering r-bioc-genomicalignments:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 347s Reinst Failed because of protected r-bioc-biocgenerics:amd64 347s Considering r-bioc-genomicalignments:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 347s Broken r-bioc-rtracklayer:amd64 Depends on r-bioc-biocio:amd64 < none | 1.14.0+dfsg-1 @un uH > (>= 1.14.0) 347s Considering r-bioc-biocio:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 347s Reinst Failed because of protected r-bioc-biocgenerics:amd64 347s Considering r-bioc-biocio:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 347s Broken r-bioc-rtracklayer:amd64 Depends on r-cran-restfulr:amd64 < none | 0.0.15-1 @un uH > (>= 0.0.13) 347s Considering r-cran-restfulr:amd64 0 as a solution to r-bioc-rtracklayer:amd64 1 347s Re-Instated r-cran-rcurl:amd64 347s Re-Instated r-cran-rjson:amd64 347s Re-Instated r-cran-restfulr:amd64 347s Investigating (0) r-bioc-deseq2:amd64 < none -> 1.44.0+dfsg-1 @un puN Ib > 347s Broken r-bioc-deseq2:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 347s Considering r-bioc-biocgenerics:amd64 29 as a solution to r-bioc-deseq2:amd64 1 347s Broken r-bioc-deseq2:amd64 Depends on r-bioc-biocparallel:amd64 < none | 1.38.0-2 @un uH > (>= 1.38.0) 347s Considering r-bioc-biocparallel:amd64 0 as a solution to r-bioc-deseq2:amd64 1 347s Reinst Failed because of protected r-bioc-biocgenerics:amd64 347s Considering r-bioc-biocparallel:amd64 0 as a solution to r-bioc-deseq2:amd64 1 347s Broken r-bioc-deseq2:amd64 Depends on r-cran-locfit:amd64 < none | 1.5-9.10-1 @un uH > 347s Considering r-cran-locfit:amd64 2 as a solution to r-bioc-deseq2:amd64 1 347s Re-Instated r-cran-locfit:amd64 347s Broken r-bioc-deseq2:amd64 Depends on r-bioc-matrixgenerics:amd64 < none | 1.16.0-2 @un uH > (>= 1.16.0) 347s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-deseq2:amd64 1 347s Considering r-bioc-matrixgenerics:amd64 0 as a solution to r-bioc-deseq2:amd64 1 347s Investigating (0) r-bioc-multtest:amd64 < none -> 2.60.0-1 @un puN Ib > 347s Broken r-bioc-multtest:amd64 Depends on r-api-bioc-3.19:amd64 < none @un H > 347s Considering r-bioc-biocgenerics:amd64 29 as a solution to r-bioc-multtest:amd64 0 347s Done 347s Some packages could not be installed. This may mean that you have 347s requested an impossible situation or if you are using the unstable 347s distribution that some required packages have not yet been created 347s or been moved out of Incoming. 347s The following information may help to resolve the situation: 347s 347s The following packages have unmet dependencies: 347s r-bioc-biobase : Depends: r-api-bioc-3.19 347s r-bioc-delayedarray : Depends: r-api-bioc-3.19 347s Depends: r-bioc-matrixgenerics (>= 1.16.0) but it is not going to be installed 347s Depends: r-bioc-s4arrays (>= 1.4.1) but it is not going to be installed 347s Depends: r-bioc-sparsearray (>= 1.4.8) but it is not going to be installed 347s r-bioc-deseq2 : Depends: r-api-bioc-3.19 347s Depends: r-bioc-biocparallel (>= 1.38.0) but it is not going to be installed 347s Depends: r-bioc-matrixgenerics (>= 1.16.0) but it is not going to be installed 347s r-bioc-genomeinfodb : Depends: r-api-bioc-3.19 347s Depends: r-bioc-ucsc.utils (> 1.0.0+ds-1) but it is not going to be installed 347s r-bioc-genomicranges : Depends: r-api-bioc-3.19 347s Depends: r-bioc-xvector (>= 0.29.2) but it is not going to be installed 347s r-bioc-iranges : Depends: r-api-bioc-3.19 347s r-bioc-multtest : Depends: r-api-bioc-3.19 347s r-bioc-rtracklayer : Depends: r-api-bioc-3.19 347s Depends: r-bioc-xvector (>= 0.44.0) but it is not going to be installed 347s Depends: r-bioc-biostrings (>= 2.72.1) but it is not going to be installed 347s Depends: r-bioc-zlibbioc (>= 1.50.0) but it is not going to be installed 347s Depends: r-bioc-rsamtools (>= 2.20.0) but it is not going to be installed 347s Depends: r-bioc-genomicalignments (>= 1.40.0) but it is not going to be installed 347s Depends: r-bioc-biocio (>= 1.14.0) but it is not going to be installed 347s r-bioc-s4vectors : Depends: r-api-bioc-3.19 347s r-bioc-summarizedexperiment : Depends: r-api-bioc-3.19 347s Depends: r-bioc-matrixgenerics (>= 1.16.0) but it is not going to be installed 347s Depends: r-bioc-s4arrays (>= 1.4.1) but it is not going to be installed 347s E: Unable to correct problems, you have held broken packages. 347s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed 347s Reading package lists... 347s Building dependency tree... 347s Reading state information... 347s Starting pkgProblemResolver with broken count: 0 347s Starting 2 pkgProblemResolver with broken count: 0 347s Done 348s The following NEW packages will be installed: 348s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 348s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 348s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-14 348s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 348s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 348s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 348s javascript-common libamd3 libasan8 libblas-dev libblas3 libboost-dev 348s libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libcolamd3 libdatrie1 348s libdeflate-dev libdeflate0 libfftw3-double3 libfontconfig1 libgcc-14-dev 348s libgfortran-14-dev libgfortran5 libglpk40 libgomp1 libgraphite2-3 348s libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 348s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 348s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 348s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 348s libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js 348s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 348s libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 liblerc4 348s liblsan0 libltdl7 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev 348s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 348s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 348s libpixman-1-0 libpkgconf3 libpng-dev libquadmath0 libreadline-dev 348s libsharpyuv0 libsm6 libstdc++-14-dev libsuitesparseconfig7 libtcl8.6 348s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 348s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 348s littler node-bootstrap-sass node-html5shiv node-normalize.css pandoc 348s pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 348s r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 348s r-bioc-biostrings r-bioc-delayedarray r-bioc-deseq2 r-bioc-genomeinfodb 348s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges 348s r-bioc-iranges r-bioc-limma r-bioc-matrixgenerics r-bioc-multtest 348s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 348s r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment 348s r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-ape 348s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-bitops r-cran-brio 348s r-cran-bslib r-cran-cachem r-cran-callr r-cran-caret r-cran-catools 348s r-cran-class r-cran-cli r-cran-clock r-cran-cluster r-cran-codetools 348s r-cran-colorspace r-cran-colourpicker r-cran-commonmark r-cran-conquer 348s r-cran-cowplot r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl 348s r-cran-data.table r-cran-deldir r-cran-deoptimr r-cran-desc r-cran-diagram 348s r-cran-diffobj r-cran-digest r-cran-dotcall64 r-cran-dplyr r-cran-dqrng 348s r-cran-e1071 r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastdummies 348s r-cran-fastmap r-cran-fitdistrplus r-cran-fnn r-cran-fontawesome 348s r-cran-foreach r-cran-formatr r-cran-fs r-cran-futile.logger 348s r-cran-futile.options r-cran-future r-cran-future.apply r-cran-gdata 348s r-cran-generics r-cran-ggplot2 r-cran-ggrepel r-cran-ggridges r-cran-globals 348s r-cran-glue r-cran-goftest r-cran-gower r-cran-gplots r-cran-gridextra 348s r-cran-gtable r-cran-gtools r-cran-hardhat r-cran-here r-cran-highr 348s r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-ica 348s r-cran-igraph r-cran-ipred r-cran-irlba r-cran-isoband r-cran-iterators 348s r-cran-jquerylib r-cran-jsonlite r-cran-kernlab r-cran-kernsmooth 348s r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice 348s r-cran-lava r-cran-lazyeval r-cran-leiden r-cran-lifecycle r-cran-listenv 348s r-cran-littler r-cran-lmtest r-cran-locfit r-cran-lubridate r-cran-magrittr 348s r-cran-mass r-cran-mathjaxr r-cran-matrix r-cran-matrixmodels 348s r-cran-matrixstats r-cran-memoise r-cran-metap r-cran-mgcv r-cran-mime 348s r-cran-miniui r-cran-mixtools r-cran-mnormt r-cran-modelmetrics 348s r-cran-multcomp r-cran-munsell r-cran-mutoss r-cran-mvtnorm r-cran-nlme 348s r-cran-nnet r-cran-numderiv r-cran-openssl r-cran-parallelly 348s r-cran-patchwork r-cran-pbapply r-cran-pillar r-cran-pkgbuild 348s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plotly 348s r-cran-plotrix r-cran-plyr r-cran-png r-cran-polyclip r-cran-praise 348s r-cran-proc r-cran-processx r-cran-prodlim r-cran-progressr r-cran-promises 348s r-cran-proxy r-cran-ps r-cran-purrr r-cran-qqconf r-cran-quantreg 348s r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rann 348s r-cran-rappdirs r-cran-rbibutils r-cran-rcolorbrewer r-cran-rcpp 348s r-cran-rcppannoy r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcpphnsw 348s r-cran-rcppprogress r-cran-rcpptoml r-cran-rcurl r-cran-rdpack 348s r-cran-recipes r-cran-reshape2 r-cran-restfulr r-cran-reticulate 348s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-robustbase r-cran-rocr 348s r-cran-rpart r-cran-rprojroot r-cran-rspectra r-cran-rsvd r-cran-rtsne 348s r-cran-sandwich r-cran-sass r-cran-scales r-cran-scattermore 348s r-cran-sctransform r-cran-segmented r-cran-seurat r-cran-seuratobject 348s r-cran-shape r-cran-shiny r-cran-shinyjs r-cran-sitmo r-cran-sn r-cran-snow 348s r-cran-sourcetools r-cran-sp r-cran-spam r-cran-sparsem r-cran-spatstat.data 348s r-cran-spatstat.explore r-cran-spatstat.geom r-cran-spatstat.random 348s r-cran-spatstat.sparse r-cran-spatstat.utils r-cran-squarem r-cran-statmod 348s r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tensor 348s r-cran-testthat r-cran-tfisher r-cran-th.data r-cran-tibble r-cran-tidyr 348s r-cran-tidyselect r-cran-timechange r-cran-timedate r-cran-tinytex 348s r-cran-tzdb r-cran-utf8 r-cran-uwot r-cran-vctrs r-cran-vgam 348s r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml 348s r-cran-xtable r-cran-yaml r-cran-zoo unzip x11-common xdg-utils zip 348s zlib1g-dev 348s The following packages will be upgraded: 348s gcc-14-base libatomic1 libgcc-s1 libpng16-16t64 libstdc++6 348s 5 upgraded, 386 newly installed, 0 to remove and 125 not upgraded. 348s Need to get 458 MB of archives. 348s After this operation, 1318 MB of additional disk space will be used. 348s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 gcc-14-base amd64 14.2.0-13ubuntu1 [53.0 kB] 348s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libstdc++6 amd64 14.2.0-13ubuntu1 [787 kB] 348s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libatomic1 amd64 14.2.0-13ubuntu1 [10.3 kB] 348s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgcc-s1 amd64 14.2.0-13ubuntu1 [78.2 kB] 348s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpng16-16t64 amd64 1.6.45-1 [219 kB] 348s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 349s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 349s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-13ubuntu1 [11.9 MB] 349s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 cpp-14 amd64 14.2.0-13ubuntu1 [1032 B] 349s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 349s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 349s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libcc1-0 amd64 14.2.0-13ubuntu1 [47.6 kB] 349s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgomp1 amd64 14.2.0-13ubuntu1 [148 kB] 349s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libitm1 amd64 14.2.0-13ubuntu1 [29.1 kB] 349s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libasan8 amd64 14.2.0-13ubuntu1 [2998 kB] 349s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 liblsan0 amd64 14.2.0-13ubuntu1 [1317 kB] 349s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libtsan2 amd64 14.2.0-13ubuntu1 [2732 kB] 349s Get:18 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libubsan1 amd64 14.2.0-13ubuntu1 [1177 kB] 349s Get:19 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libhwasan0 amd64 14.2.0-13ubuntu1 [1634 kB] 349s Get:20 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libquadmath0 amd64 14.2.0-13ubuntu1 [153 kB] 349s Get:21 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgcc-14-dev amd64 14.2.0-13ubuntu1 [2815 kB] 349s Get:22 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-13ubuntu1 [23.4 MB] 350s Get:23 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 gcc-14 amd64 14.2.0-13ubuntu1 [534 kB] 350s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 350s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 350s Get:26 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libstdc++-14-dev amd64 14.2.0-13ubuntu1 [2508 kB] 350s Get:27 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-13ubuntu1 [13.3 MB] 350s Get:28 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 g++-14 amd64 14.2.0-13ubuntu1 [21.1 kB] 350s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 350s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 350s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 350s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 350s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 350s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 350s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 350s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 350s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 350s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 350s Get:39 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 350s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 350s Get:41 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgfortran5 amd64 14.2.0-13ubuntu1 [909 kB] 350s Get:42 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgfortran-14-dev amd64 14.2.0-13ubuntu1 [965 kB] 350s Get:43 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-13ubuntu1 [12.5 MB] 351s Get:44 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 gfortran-14 amd64 14.2.0-13ubuntu1 [13.2 kB] 351s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1022 B] 351s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.1.0-2ubuntu1 [1172 B] 351s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 351s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 11+nmu1 [5936 B] 351s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libsuitesparseconfig7 amd64 1:7.8.3+dfsg-2 [13.4 kB] 351s Get:50 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamd3 amd64 1:7.8.3+dfsg-2 [31.1 kB] 351s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-4 [332 kB] 351s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.0-4 [307 kB] 351s Get:53 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost1.83-dev amd64 1.83.0-4ubuntu2 [10.7 MB] 351s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 351s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 351s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 351s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 351s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 351s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 351s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 351s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libcolamd3 amd64 1:7.8.3+dfsg-2 [19.5 kB] 351s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 351s Get:63 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 351s Get:64 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 351s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libfftw3-double3 amd64 3.3.10-2fakesync1build1 [839 kB] 351s Get:66 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libltdl7 amd64 2.5.4-2 [46.0 kB] 351s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 libglpk40 amd64 5.0-1build2 [369 kB] 351s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 351s Get:69 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 351s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 351s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 351s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 352s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 352s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 352s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 352s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 352s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 352s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 352s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 352s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 352s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 352s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 352s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 352s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 352s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 352s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 352s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 352s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 352s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 352s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 352s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 352s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-4 [3177 kB] 352s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.0-4 [6486 kB] 352s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 352s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 352s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5-2 [384 kB] 352s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 352s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 352s Get:99 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpango-1.0-0 amd64 1.56.0-3 [255 kB] 352s Get:100 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpangoft2-1.0-0 amd64 1.56.0-3 [52.5 kB] 352s Get:101 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpangocairo-1.0-0 amd64 1.56.0-3 [29.1 kB] 352s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 352s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 352s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu3 [214 kB] 352s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu3 [201 kB] 352s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu3 [6768 B] 352s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.42-4ubuntu3 [747 kB] 353s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 353s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 353s Get:110 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpng-dev amd64 1.6.45-1 [300 kB] 353s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 353s Get:112 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 353s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 353s Get:114 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 353s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 353s Get:116 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 353s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 353s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 353s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 353s Get:120 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 353s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 353s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu1 [185 kB] 353s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 353s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-0ubuntu1 [67.5 kB] 353s Get:125 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-base-core amd64 4.4.2-1build1 [28.9 MB] 354s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 354s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 354s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 354s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 354s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 354s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 354s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 355s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.3-1 [189 kB] 355s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 355s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 355s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 355s Get:137 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-base-dev all 4.4.2-1build1 [4342 B] 355s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 355s Get:139 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 355s Get:140 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 355s Get:141 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 355s Get:142 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 355s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 355s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 355s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 355s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 355s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 355s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 355s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 355s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.0-1 [221 kB] 355s Get:151 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 355s Get:152 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-iranges amd64 2.40.1-2 [2310 kB] 355s Get:153 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 355s Get:154 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 355s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 5.2.3+dfsg-1ubuntu1 [180 kB] 355s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.8.9+dfsg-1 [445 kB] 355s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 355s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 355s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 355s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.2.0+dfsg-1 [405 kB] 355s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 355s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 355s Get:163 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 355s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 356s Get:165 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-genomeinfodb all 1.42.1+dfsg-2 [3883 kB] 356s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 356s Get:167 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 356s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 357s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-1-1 [4199 kB] 357s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixstats amd64 1.4.1-1 [513 kB] 357s Get:171 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-matrixgenerics all 1.18.0-2 [446 kB] 357s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 357s Get:173 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 357s Get:174 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-sparsearray amd64 1.6.0+dfsg-2 [1392 kB] 357s Get:175 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 357s Get:176 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB] 357s Get:177 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 357s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-locfit amd64 1.5-9.10-1 [518 kB] 357s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.3-1 [1348 kB] 357s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 357s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.4-1 [1708 kB] 357s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 357s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 357s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 357s Get:185 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 357s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.166-1 [2314 kB] 357s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 357s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 358s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 358s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 358s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB] 358s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 358s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 358s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 358s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 358s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 358s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 358s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 358s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 358s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 358s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 358s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 358s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 359s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 359s Get:205 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 359s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpparmadillo amd64 14.2.2-1-1 [864 kB] 359s Get:207 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-deseq2 amd64 1.46.0+dfsg-2 [1250 kB] 359s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bitops amd64 1.0-8-1 [30.3 kB] 359s Get:209 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB] 359s Get:210 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB] 359s Get:211 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB] 359s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 359s Get:213 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-limma amd64 3.62.2+dfsg-1 [1969 kB] 359s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB] 360s Get:215 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-multtest amd64 2.62.0-2 [844 kB] 360s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xml amd64 3.99-0.18-1 [1748 kB] 360s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB] 360s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB] 360s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 360s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 360s Get:221 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-bioc-rtracklayer amd64 1.66.0-2 [5227 kB] 360s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 360s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ape amd64 5.8-1 [2923 kB] 361s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 361s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 361s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 361s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 361s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 361s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 361s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 361s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.4+dfsg-1 [245 kB] 361s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 361s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 361s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.7.0+dfsg-1 [4255 kB] 361s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.8.0-1 [395 kB] 361s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.4-1 [353 kB] 361s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 361s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 361s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 361s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-e1071 amd64 1.7-16-1 [565 kB] 361s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-iterators all 1.0.14-1 [336 kB] 361s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-foreach all 1.5.2-1 [124 kB] 361s Get:243 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-data.table amd64 1.16.4+dfsg-1 [2032 kB] 361s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-modelmetrics amd64 1.2.2.2-1build1 [128 kB] 361s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 361s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-proc amd64 1.18.5-1 [966 kB] 361s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 361s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 361s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 361s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tzdb amd64 0.4.0-2 [521 kB] 361s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-clock amd64 0.7.1-1 [1804 kB] 361s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gower amd64 1.0.1-1 [207 kB] 361s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-hardhat all 1.4.0+dfsg-1 [565 kB] 361s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB] 361s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nnet amd64 7.3-20-1 [116 kB] 361s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shape all 1.4.6.1-1 [749 kB] 361s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diagram all 1.6.5-2 [656 kB] 362s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernsmooth amd64 2.23-26-1 [94.5 kB] 362s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-globals all 0.16.3-1 [120 kB] 362s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 362s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-parallelly amd64 1.38.0-1 [385 kB] 362s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 362s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future.apply all 1.11.2+dfsg-1 [172 kB] 362s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-numderiv all 2016.8-1.1-3 [115 kB] 362s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-progressr all 0.14.0-1 [338 kB] 362s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-squarem all 2021.1-1 [179 kB] 362s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lava all 1.7.3+dfsg-1 [2166 kB] 362s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-prodlim amd64 2024.06.25-1 [415 kB] 362s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ipred amd64 0.9-15-1 [386 kB] 362s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-timechange amd64 0.3.0-1 [178 kB] 362s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lubridate amd64 1.9.3+dfsg-1 [1010 kB] 362s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 362s Get:273 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB] 362s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 362s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 362s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-timedate amd64 4041.110-1 [1208 kB] 362s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-recipes all 1.1.0+dfsg-1 [2035 kB] 362s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-reshape2 amd64 1.4.4-2build1 [114 kB] 362s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-caret amd64 6.0-94+dfsg-1 [3434 kB] 362s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-catools amd64 1.18.2-1 [201 kB] 362s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cluster amd64 2.1.8-1 [579 kB] 362s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.0-1 [111 kB] 362s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.49+dfsg-1 [545 kB] 362s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 362s Get:285 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 363s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 363s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 363s Get:288 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.53-1 [145 kB] 363s Get:289 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 363s Get:290 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 363s Get:291 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.0+dfsg-1 [287 kB] 363s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 363s Get:293 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 363s Get:294 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 363s Get:295 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 363s Get:296 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 363s Get:297 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.9.1+dfsg-1 [3111 kB] 363s Get:298 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.28+dfsg-1 [1501 kB] 363s Get:299 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 363s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-miniui all 0.1.1.1-3build1 [36.1 kB] 363s Get:301 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shinyjs all 2.1.0-1 [967 kB] 363s Get:302 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colourpicker all 1.3.0+dfsg-1 [1191 kB] 363s Get:303 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-conquer amd64 1.3.3-1 [499 kB] 363s Get:304 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cowplot all 1.1.3+dfsg-1 [614 kB] 364s Get:305 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 364s Get:306 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 364s Get:307 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 364s Get:308 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deoptimr all 1.1-3-1-1 [76.6 kB] 364s Get:309 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 364s Get:310 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 364s Get:311 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dotcall64 amd64 1.1-1-1 [38.1 kB] 364s Get:312 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sitmo amd64 2.0.2-1 [130 kB] 364s Get:313 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dqrng amd64 0.3.2+dfsg-1 [161 kB] 364s Get:314 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastdummies all 1.7.4-1 [49.7 kB] 364s Get:315 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fitdistrplus all 1.2-1-1 [2038 kB] 364s Get:316 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB] 364s Get:317 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtools amd64 3.9.5-1 [340 kB] 364s Get:318 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gdata all 3.0.1-1 [491 kB] 364s Get:319 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggrepel amd64 0.9.5-2 [254 kB] 364s Get:320 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggridges all 0.5.6-1 [2195 kB] 364s Get:321 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-goftest amd64 1.2-3-1 [59.5 kB] 364s Get:322 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gplots all 3.2.0-1 [484 kB] 364s Get:323 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 364s Get:324 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 364s Get:325 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-here all 1.0.1-2 [50.3 kB] 364s Get:326 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ica all 1.0-3-1 [85.4 kB] 364s Get:327 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-igraph amd64 2.0.3-1 [5098 kB] 364s Get:328 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-irlba amd64 2.3.5.1-4 [295 kB] 364s Get:329 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernlab amd64 0.9-33-1 [1947 kB] 365s Get:330 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpptoml amd64 0.2.2+dfsg-1 [110 kB] 365s Get:331 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 365s Get:332 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-reticulate amd64 1.39.0+dfsg-1 [1238 kB] 365s Get:333 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-leiden all 0.4.3.1+dfsg-1 [71.9 kB] 365s Get:334 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-zoo amd64 1.8-12-2 [984 kB] 365s Get:335 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lmtest amd64 0.9.40-1 [396 kB] 365s Get:336 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mathjaxr all 1.6-0-1 [605 kB] 365s Get:337 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrixmodels all 0.5-3-1 [361 kB] 365s Get:338 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rbibutils amd64 2.3-1 [1023 kB] 365s Get:339 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rdpack all 2.6.2-1 [757 kB] 365s Get:340 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mnormt amd64 2.1.1-2 [170 kB] 365s Get:341 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sparsem amd64 1.84-2-1 [813 kB] 365s Get:342 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-quantreg amd64 5.99.1-1 [1455 kB] 365s Get:343 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sn all 2.1.1-2 [1815 kB] 365s Get:344 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-mvtnorm amd64 1.3-3-1 [923 kB] 365s Get:345 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tfisher all 0.2.0-3 [79.8 kB] 365s Get:346 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plotrix all 3.8-4-1 [1120 kB] 365s Get:347 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-th.data all 1.1-2-2 [8794 kB] 365s Get:348 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sandwich all 3.1-1-1 [1483 kB] 365s Get:349 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-multcomp all 1.4-26-2 [699 kB] 365s Get:350 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mutoss all 0.1-13-1 [1123 kB] 365s Get:351 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-robustbase amd64 0.99-4-1-1 [3038 kB] 365s Get:352 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-qqconf amd64 1.3.2+dfsg-1 [157 kB] 365s Get:353 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-metap all 1.11-1 [570 kB] 365s Get:354 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plotly all 4.10.4+dfsg-2 [3666 kB] 366s Get:355 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-segmented all 2.1-3-1 [1366 kB] 366s Get:356 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mixtools amd64 2.0.0-1 [1399 kB] 366s Get:357 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-patchwork all 1.3.0-1 [3220 kB] 366s Get:358 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 366s Get:359 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.4-1 [212 kB] 366s Get:360 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 366s Get:361 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB] 366s Get:362 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 366s Get:363 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 366s Get:364 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.oo all 1.26.0-1 [955 kB] 366s Get:365 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r.utils all 2.12.3-1 [1386 kB] 366s Get:366 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rann amd64 2.6.2-1 [46.3 kB] 366s Get:367 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppannoy amd64 0.0.22-1 [235 kB] 366s Get:368 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 366s Get:369 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpphnsw amd64 0.5.0+ds-1 [171 kB] 366s Get:370 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppprogress all 0.4.2-2build1 [22.0 kB] 366s Get:371 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rocr all 1.0-11-3 [456 kB] 366s Get:372 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rspectra amd64 0.16-2-1 [448 kB] 366s Get:373 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rsvd all 1.0.5-1 [3589 kB] 366s Get:374 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rtsne amd64 0.17-1 [109 kB] 366s Get:375 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scattermore amd64 1.2-1 [331 kB] 366s Get:376 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sctransform amd64 0.4.1-1 [504 kB] 366s Get:377 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sp amd64 1:2.1-4+dfsg-1 [1472 kB] 366s Get:378 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spam amd64 2.11-0-1 [2758 kB] 366s Get:379 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-seuratobject amd64 5.0.2-1 [1744 kB] 366s Get:380 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.utils amd64 3.1-0-1 [381 kB] 366s Get:381 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.data all 3.1-2-1 [4039 kB] 366s Get:382 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.geom amd64 3.2-9-2 [3946 kB] 366s Get:383 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.random amd64 3.2-3-1 [1169 kB] 366s Get:384 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tensor all 1.5-4 [15.7 kB] 366s Get:385 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.sparse amd64 3.0-3-1 [215 kB] 366s Get:386 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.explore amd64 3.2-7-1 [3432 kB] 366s Get:387 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-uwot amd64 0.2.2-1 [947 kB] 366s Get:388 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-seurat amd64 5.1.0-1 [3255 kB] 367s Get:389 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-1 [150 kB] 367s Get:390 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.1.1-1 [1636 kB] 367s Get:391 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vgam amd64 1.1-11-1 [7726 kB] 367s Preconfiguring packages ... 367s Fetched 458 MB in 19s (24.3 MB/s) 367s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 367s Preparing to unpack .../gcc-14-base_14.2.0-13ubuntu1_amd64.deb ... 367s Unpacking gcc-14-base:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 367s Setting up gcc-14-base:amd64 (14.2.0-13ubuntu1) ... 368s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 368s Preparing to unpack .../libstdc++6_14.2.0-13ubuntu1_amd64.deb ... 368s Unpacking libstdc++6:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 368s Setting up libstdc++6:amd64 (14.2.0-13ubuntu1) ... 368s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 368s Preparing to unpack .../libatomic1_14.2.0-13ubuntu1_amd64.deb ... 368s Unpacking libatomic1:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 368s Preparing to unpack .../libgcc-s1_14.2.0-13ubuntu1_amd64.deb ... 368s Unpacking libgcc-s1:amd64 (14.2.0-13ubuntu1) over (14.2.0-12ubuntu1) ... 368s Setting up libgcc-s1:amd64 (14.2.0-13ubuntu1) ... 368s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75824 files and directories currently installed.) 368s Preparing to unpack .../000-libpng16-16t64_1.6.45-1_amd64.deb ... 368s Unpacking libpng16-16t64:amd64 (1.6.45-1) over (1.6.44-3) ... 368s Selecting previously unselected package libisl23:amd64. 368s Preparing to unpack .../001-libisl23_0.27-1_amd64.deb ... 368s Unpacking libisl23:amd64 (0.27-1) ... 368s Selecting previously unselected package libmpc3:amd64. 368s Preparing to unpack .../002-libmpc3_1.3.1-1build2_amd64.deb ... 368s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 368s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 368s Preparing to unpack .../003-cpp-14-x86-64-linux-gnu_14.2.0-13ubuntu1_amd64.deb ... 368s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-13ubuntu1) ... 368s Selecting previously unselected package cpp-14. 368s Preparing to unpack .../004-cpp-14_14.2.0-13ubuntu1_amd64.deb ... 368s Unpacking cpp-14 (14.2.0-13ubuntu1) ... 368s Selecting previously unselected package cpp-x86-64-linux-gnu. 368s Preparing to unpack .../005-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 368s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 368s Selecting previously unselected package cpp. 368s Preparing to unpack .../006-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ... 368s Unpacking cpp (4:14.1.0-2ubuntu1) ... 368s Selecting previously unselected package libcc1-0:amd64. 368s Preparing to unpack .../007-libcc1-0_14.2.0-13ubuntu1_amd64.deb ... 368s Unpacking libcc1-0:amd64 (14.2.0-13ubuntu1) ... 368s Selecting previously unselected package libgomp1:amd64. 368s Preparing to unpack .../008-libgomp1_14.2.0-13ubuntu1_amd64.deb ... 368s Unpacking libgomp1:amd64 (14.2.0-13ubuntu1) ... 368s Selecting previously unselected package libitm1:amd64. 368s Preparing to unpack .../009-libitm1_14.2.0-13ubuntu1_amd64.deb ... 368s Unpacking libitm1:amd64 (14.2.0-13ubuntu1) ... 368s Selecting previously unselected package libasan8:amd64. 368s Preparing to unpack .../010-libasan8_14.2.0-13ubuntu1_amd64.deb ... 368s Unpacking libasan8:amd64 (14.2.0-13ubuntu1) ... 368s Selecting previously unselected package liblsan0:amd64. 368s Preparing to unpack .../011-liblsan0_14.2.0-13ubuntu1_amd64.deb ... 368s Unpacking liblsan0:amd64 (14.2.0-13ubuntu1) ... 368s Selecting previously unselected package libtsan2:amd64. 368s Preparing to unpack .../012-libtsan2_14.2.0-13ubuntu1_amd64.deb ... 368s Unpacking libtsan2:amd64 (14.2.0-13ubuntu1) ... 368s Selecting previously unselected package libubsan1:amd64. 368s Preparing to unpack .../013-libubsan1_14.2.0-13ubuntu1_amd64.deb ... 368s Unpacking libubsan1:amd64 (14.2.0-13ubuntu1) ... 368s Selecting previously unselected package libhwasan0:amd64. 368s Preparing to unpack .../014-libhwasan0_14.2.0-13ubuntu1_amd64.deb ... 368s Unpacking libhwasan0:amd64 (14.2.0-13ubuntu1) ... 368s Selecting previously unselected package libquadmath0:amd64. 368s Preparing to unpack .../015-libquadmath0_14.2.0-13ubuntu1_amd64.deb ... 368s Unpacking libquadmath0:amd64 (14.2.0-13ubuntu1) ... 368s Selecting previously unselected package libgcc-14-dev:amd64. 368s Preparing to unpack .../016-libgcc-14-dev_14.2.0-13ubuntu1_amd64.deb ... 368s Unpacking libgcc-14-dev:amd64 (14.2.0-13ubuntu1) ... 369s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 369s Preparing to unpack .../017-gcc-14-x86-64-linux-gnu_14.2.0-13ubuntu1_amd64.deb ... 369s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-13ubuntu1) ... 369s Selecting previously unselected package gcc-14. 369s Preparing to unpack .../018-gcc-14_14.2.0-13ubuntu1_amd64.deb ... 369s Unpacking gcc-14 (14.2.0-13ubuntu1) ... 369s Selecting previously unselected package gcc-x86-64-linux-gnu. 369s Preparing to unpack .../019-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 369s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 369s Selecting previously unselected package gcc. 369s Preparing to unpack .../020-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ... 369s Unpacking gcc (4:14.1.0-2ubuntu1) ... 369s Selecting previously unselected package libstdc++-14-dev:amd64. 369s Preparing to unpack .../021-libstdc++-14-dev_14.2.0-13ubuntu1_amd64.deb ... 369s Unpacking libstdc++-14-dev:amd64 (14.2.0-13ubuntu1) ... 369s Selecting previously unselected package g++-14-x86-64-linux-gnu. 369s Preparing to unpack .../022-g++-14-x86-64-linux-gnu_14.2.0-13ubuntu1_amd64.deb ... 369s Unpacking g++-14-x86-64-linux-gnu (14.2.0-13ubuntu1) ... 369s Selecting previously unselected package g++-14. 369s Preparing to unpack .../023-g++-14_14.2.0-13ubuntu1_amd64.deb ... 369s Unpacking g++-14 (14.2.0-13ubuntu1) ... 369s Selecting previously unselected package g++-x86-64-linux-gnu. 369s Preparing to unpack .../024-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 369s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 369s Selecting previously unselected package g++. 369s Preparing to unpack .../025-g++_4%3a14.1.0-2ubuntu1_amd64.deb ... 369s Unpacking g++ (4:14.1.0-2ubuntu1) ... 369s Selecting previously unselected package build-essential. 369s Preparing to unpack .../026-build-essential_12.10ubuntu1_amd64.deb ... 369s Unpacking build-essential (12.10ubuntu1) ... 369s Selecting previously unselected package dctrl-tools. 369s Preparing to unpack .../027-dctrl-tools_2.24-3build3_amd64.deb ... 369s Unpacking dctrl-tools (2.24-3build3) ... 369s Selecting previously unselected package fonts-dejavu-mono. 369s Preparing to unpack .../028-fonts-dejavu-mono_2.37-8_all.deb ... 369s Unpacking fonts-dejavu-mono (2.37-8) ... 369s Selecting previously unselected package fonts-dejavu-core. 369s Preparing to unpack .../029-fonts-dejavu-core_2.37-8_all.deb ... 369s Unpacking fonts-dejavu-core (2.37-8) ... 369s Selecting previously unselected package fontconfig-config. 369s Preparing to unpack .../030-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 370s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 370s Selecting previously unselected package libfontconfig1:amd64. 370s Preparing to unpack .../031-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 370s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 370s Selecting previously unselected package fontconfig. 370s Preparing to unpack .../032-fontconfig_2.15.0-1.1ubuntu2_amd64.deb ... 370s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 370s Selecting previously unselected package fonts-font-awesome. 370s Preparing to unpack .../033-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 370s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 370s Selecting previously unselected package fonts-glyphicons-halflings. 370s Preparing to unpack .../034-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 370s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 370s Selecting previously unselected package fonts-mathjax. 370s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 370s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 370s Selecting previously unselected package libgfortran5:amd64. 370s Preparing to unpack .../036-libgfortran5_14.2.0-13ubuntu1_amd64.deb ... 370s Unpacking libgfortran5:amd64 (14.2.0-13ubuntu1) ... 370s Selecting previously unselected package libgfortran-14-dev:amd64. 370s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-13ubuntu1_amd64.deb ... 370s Unpacking libgfortran-14-dev:amd64 (14.2.0-13ubuntu1) ... 370s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 370s Preparing to unpack .../038-gfortran-14-x86-64-linux-gnu_14.2.0-13ubuntu1_amd64.deb ... 370s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-13ubuntu1) ... 370s Selecting previously unselected package gfortran-14. 370s Preparing to unpack .../039-gfortran-14_14.2.0-13ubuntu1_amd64.deb ... 370s Unpacking gfortran-14 (14.2.0-13ubuntu1) ... 370s Selecting previously unselected package gfortran-x86-64-linux-gnu. 370s Preparing to unpack .../040-gfortran-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 370s Unpacking gfortran-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 370s Selecting previously unselected package gfortran. 370s Preparing to unpack .../041-gfortran_4%3a14.1.0-2ubuntu1_amd64.deb ... 370s Unpacking gfortran (4:14.1.0-2ubuntu1) ... 370s Selecting previously unselected package icu-devtools. 370s Preparing to unpack .../042-icu-devtools_76.1-1ubuntu2_amd64.deb ... 370s Unpacking icu-devtools (76.1-1ubuntu2) ... 370s Selecting previously unselected package javascript-common. 370s Preparing to unpack .../043-javascript-common_11+nmu1_all.deb ... 370s Unpacking javascript-common (11+nmu1) ... 370s Selecting previously unselected package libsuitesparseconfig7:amd64. 370s Preparing to unpack .../044-libsuitesparseconfig7_1%3a7.8.3+dfsg-2_amd64.deb ... 370s Unpacking libsuitesparseconfig7:amd64 (1:7.8.3+dfsg-2) ... 370s Selecting previously unselected package libamd3:amd64. 370s Preparing to unpack .../045-libamd3_1%3a7.8.3+dfsg-2_amd64.deb ... 370s Unpacking libamd3:amd64 (1:7.8.3+dfsg-2) ... 370s Selecting previously unselected package libblas3:amd64. 370s Preparing to unpack .../046-libblas3_3.12.0-4_amd64.deb ... 370s Unpacking libblas3:amd64 (3.12.0-4) ... 370s Selecting previously unselected package libblas-dev:amd64. 370s Preparing to unpack .../047-libblas-dev_3.12.0-4_amd64.deb ... 370s Unpacking libblas-dev:amd64 (3.12.0-4) ... 370s Selecting previously unselected package libboost1.83-dev:amd64. 370s Preparing to unpack .../048-libboost1.83-dev_1.83.0-4ubuntu2_amd64.deb ... 370s Unpacking libboost1.83-dev:amd64 (1.83.0-4ubuntu2) ... 372s Selecting previously unselected package libboost-dev:amd64. 372s Preparing to unpack .../049-libboost-dev_1.83.0.2ubuntu1_amd64.deb ... 372s Unpacking libboost-dev:amd64 (1.83.0.2ubuntu1) ... 372s Selecting previously unselected package libbz2-dev:amd64. 372s Preparing to unpack .../050-libbz2-dev_1.0.8-6_amd64.deb ... 372s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 372s Selecting previously unselected package libpixman-1-0:amd64. 372s Preparing to unpack .../051-libpixman-1-0_0.44.0-3_amd64.deb ... 372s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 372s Selecting previously unselected package libxcb-render0:amd64. 372s Preparing to unpack .../052-libxcb-render0_1.17.0-2_amd64.deb ... 372s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 372s Selecting previously unselected package libxcb-shm0:amd64. 372s Preparing to unpack .../053-libxcb-shm0_1.17.0-2_amd64.deb ... 372s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 372s Selecting previously unselected package libxrender1:amd64. 372s Preparing to unpack .../054-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 372s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 372s Selecting previously unselected package libcairo2:amd64. 372s Preparing to unpack .../055-libcairo2_1.18.2-2_amd64.deb ... 372s Unpacking libcairo2:amd64 (1.18.2-2) ... 372s Selecting previously unselected package libcolamd3:amd64. 372s Preparing to unpack .../056-libcolamd3_1%3a7.8.3+dfsg-2_amd64.deb ... 372s Unpacking libcolamd3:amd64 (1:7.8.3+dfsg-2) ... 372s Selecting previously unselected package libdatrie1:amd64. 372s Preparing to unpack .../057-libdatrie1_0.2.13-3build1_amd64.deb ... 372s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 372s Selecting previously unselected package libdeflate0:amd64. 372s Preparing to unpack .../058-libdeflate0_1.23-1_amd64.deb ... 372s Unpacking libdeflate0:amd64 (1.23-1) ... 372s Selecting previously unselected package libdeflate-dev:amd64. 372s Preparing to unpack .../059-libdeflate-dev_1.23-1_amd64.deb ... 372s Unpacking libdeflate-dev:amd64 (1.23-1) ... 373s Selecting previously unselected package libfftw3-double3:amd64. 373s Preparing to unpack .../060-libfftw3-double3_3.3.10-2fakesync1build1_amd64.deb ... 373s Unpacking libfftw3-double3:amd64 (3.3.10-2fakesync1build1) ... 373s Selecting previously unselected package libltdl7:amd64. 373s Preparing to unpack .../061-libltdl7_2.5.4-2_amd64.deb ... 373s Unpacking libltdl7:amd64 (2.5.4-2) ... 373s Selecting previously unselected package libglpk40:amd64. 373s Preparing to unpack .../062-libglpk40_5.0-1build2_amd64.deb ... 373s Unpacking libglpk40:amd64 (5.0-1build2) ... 373s Selecting previously unselected package libgraphite2-3:amd64. 373s Preparing to unpack .../063-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 373s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 373s Selecting previously unselected package libharfbuzz0b:amd64. 373s Preparing to unpack .../064-libharfbuzz0b_10.2.0-1_amd64.deb ... 373s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 373s Selecting previously unselected package x11-common. 373s Preparing to unpack .../065-x11-common_1%3a7.7+23ubuntu3_all.deb ... 373s Unpacking x11-common (1:7.7+23ubuntu3) ... 373s Selecting previously unselected package libice6:amd64. 373s Preparing to unpack .../066-libice6_2%3a1.1.1-1_amd64.deb ... 373s Unpacking libice6:amd64 (2:1.1.1-1) ... 373s Selecting previously unselected package libicu-dev:amd64. 373s Preparing to unpack .../067-libicu-dev_76.1-1ubuntu2_amd64.deb ... 373s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ... 373s Selecting previously unselected package libjpeg-turbo8:amd64. 373s Preparing to unpack .../068-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 373s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 373s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 373s Preparing to unpack .../069-libjpeg-turbo8-dev_2.1.5-3ubuntu2_amd64.deb ... 373s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ... 373s Selecting previously unselected package libjpeg8:amd64. 373s Preparing to unpack .../070-libjpeg8_8c-2ubuntu11_amd64.deb ... 373s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 373s Selecting previously unselected package libjpeg8-dev:amd64. 373s Preparing to unpack .../071-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 373s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 373s Selecting previously unselected package libjpeg-dev:amd64. 373s Preparing to unpack .../072-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 373s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 373s Selecting previously unselected package libjs-bootstrap. 373s Preparing to unpack .../073-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 373s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 373s Selecting previously unselected package libjs-popper.js. 373s Preparing to unpack .../074-libjs-popper.js_1.16.1+ds-6_all.deb ... 373s Unpacking libjs-popper.js (1.16.1+ds-6) ... 373s Selecting previously unselected package libjs-bootstrap4. 373s Preparing to unpack .../075-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 373s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 373s Selecting previously unselected package libjs-d3. 373s Preparing to unpack .../076-libjs-d3_3.5.17-4_all.deb ... 373s Unpacking libjs-d3 (3.5.17-4) ... 373s Selecting previously unselected package libjs-es5-shim. 373s Preparing to unpack .../077-libjs-es5-shim_4.6.7-2_all.deb ... 373s Unpacking libjs-es5-shim (4.6.7-2) ... 373s Selecting previously unselected package libjs-highlight.js. 373s Preparing to unpack .../078-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 373s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 373s Selecting previously unselected package libjs-jquery. 373s Preparing to unpack .../079-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 373s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 373s Selecting previously unselected 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Selecting previously unselected package libpcre2-posix3:amd64. 374s Preparing to unpack .../101-libpcre2-posix3_10.42-4ubuntu3_amd64.deb ... 374s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu3) ... 374s Selecting previously unselected package libpcre2-dev:amd64. 374s Preparing to unpack .../102-libpcre2-dev_10.42-4ubuntu3_amd64.deb ... 374s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu3) ... 374s Selecting previously unselected package libpkgconf3:amd64. 374s Preparing to unpack .../103-libpkgconf3_1.8.1-4_amd64.deb ... 374s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 374s Selecting previously unselected package zlib1g-dev:amd64. 374s Preparing to unpack .../104-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 374s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 374s Selecting previously unselected package libpng-dev:amd64. 374s Preparing to unpack .../105-libpng-dev_1.6.45-1_amd64.deb ... 374s Unpacking libpng-dev:amd64 (1.6.45-1) ... 374s Selecting previously unselected package libreadline-dev:amd64. 374s Preparing to unpack .../106-libreadline-dev_8.2-6_amd64.deb ... 374s Unpacking libreadline-dev:amd64 (8.2-6) ... 374s Selecting previously unselected package libsharpyuv0:amd64. 374s Preparing to unpack .../107-libsharpyuv0_1.5.0-0.1_amd64.deb ... 374s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 374s Selecting previously unselected package libsm6:amd64. 374s Preparing to unpack .../108-libsm6_2%3a1.2.4-1_amd64.deb ... 374s Unpacking libsm6:amd64 (2:1.2.4-1) ... 374s Selecting previously unselected package libtcl8.6:amd64. 374s Preparing to unpack .../109-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 374s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 375s Selecting previously unselected package libjbig0:amd64. 375s Preparing to unpack .../110-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 375s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 375s Selecting previously unselected package libwebp7:amd64. 375s Preparing to unpack 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(1:1.2.1-1.2build1) ... 375s Selecting previously unselected package zip. 375s Preparing to unpack .../117-zip_3.0-14ubuntu1_amd64.deb ... 375s Unpacking zip (3.0-14ubuntu1) ... 375s Selecting previously unselected package unzip. 375s Preparing to unpack .../118-unzip_6.0-28ubuntu6_amd64.deb ... 375s Unpacking unzip (6.0-28ubuntu6) ... 375s Selecting previously unselected package xdg-utils. 375s Preparing to unpack .../119-xdg-utils_1.2.1-0ubuntu1_all.deb ... 375s Unpacking xdg-utils (1.2.1-0ubuntu1) ... 375s Selecting previously unselected package r-base-core. 375s Preparing to unpack .../120-r-base-core_4.4.2-1build1_amd64.deb ... 375s Unpacking r-base-core (4.4.2-1build1) ... 375s Selecting previously unselected package r-cran-littler. 375s Preparing to unpack .../121-r-cran-littler_0.3.20-2_amd64.deb ... 375s Unpacking r-cran-littler (0.3.20-2) ... 375s Selecting previously unselected package littler. 375s Preparing to unpack .../122-littler_0.3.20-2_all.deb ... 375s Unpacking littler (0.3.20-2) ... 375s Selecting previously unselected package node-bootstrap-sass. 375s Preparing to unpack .../123-node-bootstrap-sass_3.4.3-2_all.deb ... 375s Unpacking node-bootstrap-sass (3.4.3-2) ... 375s Selecting previously unselected package node-html5shiv. 375s Preparing to unpack .../124-node-html5shiv_3.7.3+dfsg-5_all.deb ... 375s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 375s Selecting previously unselected package node-normalize.css. 375s Preparing to unpack .../125-node-normalize.css_8.0.1-5_all.deb ... 375s Unpacking node-normalize.css (8.0.1-5) ... 375s Selecting previously unselected package pandoc-data. 375s Preparing to unpack .../126-pandoc-data_3.1.11.1-3build1_all.deb ... 375s Unpacking pandoc-data (3.1.11.1-3build1) ... 375s Selecting previously unselected package pandoc. 375s Preparing to unpack .../127-pandoc_3.1.11.1+ds-2_amd64.deb ... 375s Unpacking pandoc (3.1.11.1+ds-2) ... 376s Selecting previously unselected package liblzma-dev:amd64. 376s 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... 377s Selecting previously unselected package r-cran-r6. 377s Preparing to unpack .../156-r-cran-r6_2.5.1-1_all.deb ... 377s Unpacking r-cran-r6 (2.5.1-1) ... 377s Selecting previously unselected package r-cran-httr. 377s Preparing to unpack .../157-r-cran-httr_1.4.7+dfsg-1_all.deb ... 377s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 377s Selecting previously unselected package r-bioc-ucsc.utils. 377s Preparing to unpack .../158-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 377s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 377s Selecting previously unselected package r-bioc-genomeinfodbdata. 377s Preparing to unpack .../159-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 377s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 377s Selecting previously unselected package r-bioc-genomeinfodb. 377s Preparing to unpack .../160-r-bioc-genomeinfodb_1.42.1+dfsg-2_all.deb ... 377s Unpacking r-bioc-genomeinfodb (1.42.1+dfsg-2) ... 377s Selecting previously unselected package r-cran-crayon. 377s Preparing to unpack .../161-r-cran-crayon_1.5.2-1_all.deb ... 377s Unpacking r-cran-crayon (1.5.2-1) ... 377s Selecting previously unselected package r-bioc-biostrings. 377s Preparing to unpack .../162-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 377s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 377s Selecting previously unselected package r-cran-lattice. 377s Preparing to unpack .../163-r-cran-lattice_0.22-6-1_amd64.deb ... 377s Unpacking r-cran-lattice (0.22-6-1) ... 377s Selecting previously unselected package r-cran-matrix. 377s Preparing to unpack .../164-r-cran-matrix_1.7-1-1_amd64.deb ... 377s Unpacking r-cran-matrix (1.7-1-1) ... 377s Selecting previously unselected package r-cran-matrixstats. 377s Preparing to unpack .../165-r-cran-matrixstats_1.4.1-1_amd64.deb ... 377s Unpacking r-cran-matrixstats (1.4.1-1) ... 378s Selecting previously unselected package r-bioc-matrixgenerics. 378s Preparing to unpack .../166-r-bioc-matrixgenerics_1.18.0-2_all.deb ... 378s Unpacking r-bioc-matrixgenerics (1.18.0-2) ... 378s Selecting previously unselected package r-cran-abind. 378s Preparing to unpack .../167-r-cran-abind_1.4-8-1_all.deb ... 378s Unpacking r-cran-abind (1.4-8-1) ... 378s Selecting previously unselected package r-bioc-s4arrays. 378s Preparing to unpack .../168-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ... 378s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 378s Selecting previously unselected package r-bioc-sparsearray. 378s Preparing to unpack .../169-r-bioc-sparsearray_1.6.0+dfsg-2_amd64.deb ... 378s Unpacking r-bioc-sparsearray (1.6.0+dfsg-2) ... 378s Selecting previously unselected package r-bioc-delayedarray. 378s Preparing to unpack .../170-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ... 378s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 378s Selecting previously unselected package r-bioc-genomicranges. 378s Preparing to unpack .../171-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ... 378s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 378s Selecting previously unselected package r-bioc-summarizedexperiment. 378s Preparing to unpack .../172-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 378s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 378s Selecting previously unselected package r-cran-locfit. 378s Preparing to unpack .../173-r-cran-locfit_1.5-9.10-1_amd64.deb ... 378s Unpacking r-cran-locfit (1.5-9.10-1) ... 378s Selecting previously unselected package r-cran-cli. 378s Preparing to unpack .../174-r-cran-cli_3.6.3-1_amd64.deb ... 378s Unpacking r-cran-cli (3.6.3-1) ... 378s Selecting previously unselected package r-cran-glue. 378s Preparing to unpack .../175-r-cran-glue_1.8.0-1_amd64.deb ... 378s Unpacking r-cran-glue (1.8.0-1) ... 378s Selecting previously unselected package r-cran-rlang. 378s Preparing to unpack .../176-r-cran-rlang_1.1.4-1_amd64.deb ... 378s Unpacking r-cran-rlang (1.1.4-1) ... 378s Selecting previously unselected package r-cran-lifecycle. 378s Preparing to unpack .../177-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 378s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 378s Selecting previously unselected package r-cran-gtable. 378s Preparing to unpack .../178-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 378s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 378s Selecting previously unselected package r-cran-isoband. 378s Preparing to unpack .../179-r-cran-isoband_0.2.7-1_amd64.deb ... 378s Unpacking r-cran-isoband (0.2.7-1) ... 378s Selecting previously unselected package r-cran-mass. 378s Preparing to unpack .../180-r-cran-mass_7.3-64-1_amd64.deb ... 378s Unpacking r-cran-mass (7.3-64-1) ... 378s Selecting previously unselected package r-cran-nlme. 378s Preparing to unpack .../181-r-cran-nlme_3.1.166-1_amd64.deb ... 378s Unpacking r-cran-nlme (3.1.166-1) ... 378s Selecting previously unselected package r-cran-mgcv. 378s Preparing to unpack .../182-r-cran-mgcv_1.9-1-1_amd64.deb ... 378s Unpacking r-cran-mgcv (1.9-1-1) ... 378s Selecting previously unselected package r-cran-farver. 378s Preparing to unpack .../183-r-cran-farver_2.1.2-1_amd64.deb ... 378s Unpacking r-cran-farver (2.1.2-1) ... 378s Selecting previously unselected package r-cran-labeling. 378s Preparing to unpack .../184-r-cran-labeling_0.4.3-1_all.deb ... 378s Unpacking r-cran-labeling (0.4.3-1) ... 378s Selecting previously unselected package r-cran-colorspace. 378s Preparing to unpack .../185-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ... 378s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 378s Selecting previously unselected package r-cran-munsell. 378s Preparing to unpack .../186-r-cran-munsell_0.5.1-1_all.deb ... 378s Unpacking r-cran-munsell (0.5.1-1) ... 378s Selecting previously unselected package r-cran-rcolorbrewer. 378s Preparing to unpack .../187-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 378s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 378s Selecting previously unselected package r-cran-viridislite. 378s Preparing to unpack .../188-r-cran-viridislite_0.4.2-2_all.deb ... 378s Unpacking r-cran-viridislite (0.4.2-2) ... 378s Selecting previously unselected package r-cran-scales. 378s Preparing to unpack .../189-r-cran-scales_1.3.0-1_all.deb ... 378s Unpacking r-cran-scales (1.3.0-1) ... 378s Selecting previously unselected package r-cran-fansi. 378s Preparing to unpack .../190-r-cran-fansi_1.0.5-1_amd64.deb ... 378s Unpacking r-cran-fansi (1.0.5-1) ... 378s Selecting previously unselected package r-cran-magrittr. 378s Preparing to unpack .../191-r-cran-magrittr_2.0.3-1_amd64.deb ... 378s Unpacking r-cran-magrittr (2.0.3-1) ... 379s Selecting previously unselected package r-cran-utf8. 379s Preparing to unpack .../192-r-cran-utf8_1.2.4-1_amd64.deb ... 379s Unpacking r-cran-utf8 (1.2.4-1) ... 379s Selecting previously unselected package r-cran-vctrs. 379s Preparing to unpack .../193-r-cran-vctrs_0.6.5-1_amd64.deb ... 379s Unpacking r-cran-vctrs (0.6.5-1) ... 379s Selecting previously unselected package r-cran-pillar. 379s Preparing to unpack .../194-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 379s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 379s Selecting previously unselected package r-cran-pkgconfig. 379s Preparing to unpack .../195-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 379s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 379s Selecting previously unselected package r-cran-tibble. 379s Preparing to unpack .../196-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 379s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 379s Selecting previously unselected package r-cran-withr. 379s Preparing to unpack .../197-r-cran-withr_3.0.2+dfsg-1_all.deb ... 379s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 379s Selecting previously unselected package r-cran-ggplot2. 379s Preparing to unpack .../198-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 379s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 379s Selecting previously unselected package r-cran-pkgkitten. 379s Preparing to unpack .../199-r-cran-pkgkitten_0.2.4-1_all.deb ... 379s Unpacking r-cran-pkgkitten (0.2.4-1) ... 379s Selecting previously unselected package r-cran-rcpp. 379s Preparing to unpack .../200-r-cran-rcpp_1.0.14-1_amd64.deb ... 379s Unpacking r-cran-rcpp (1.0.14-1) ... 379s Selecting previously unselected package r-cran-rcpparmadillo. 379s Preparing to unpack .../201-r-cran-rcpparmadillo_14.2.2-1-1_amd64.deb ... 379s Unpacking r-cran-rcpparmadillo (14.2.2-1-1) ... 379s Selecting previously unselected package r-bioc-deseq2. 379s Preparing to unpack .../202-r-bioc-deseq2_1.46.0+dfsg-2_amd64.deb ... 379s Unpacking r-bioc-deseq2 (1.46.0+dfsg-2) ... 379s Selecting previously unselected package r-cran-bitops. 379s Preparing to unpack .../203-r-cran-bitops_1.0-8-1_amd64.deb ... 379s Unpacking r-cran-bitops (1.0-8-1) ... 379s Selecting previously unselected package r-bioc-rhtslib. 379s Preparing to unpack .../204-r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb ... 379s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 379s Selecting previously unselected package r-bioc-rsamtools. 379s Preparing to unpack .../205-r-bioc-rsamtools_2.22.0+dfsg-2_amd64.deb ... 379s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 379s Selecting previously unselected package r-bioc-genomicalignments. 379s Preparing to unpack .../206-r-bioc-genomicalignments_1.42.0-2_amd64.deb ... 379s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 379s Selecting previously unselected package r-cran-statmod. 379s Preparing to unpack .../207-r-cran-statmod_1.5.0-1_amd64.deb ... 379s Unpacking r-cran-statmod (1.5.0-1) ... 379s Selecting previously unselected package r-bioc-limma. 379s Preparing to unpack .../208-r-bioc-limma_3.62.2+dfsg-1_amd64.deb ... 379s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 379s Selecting previously unselected package r-cran-survival. 379s Preparing to unpack .../209-r-cran-survival_3.8-3-1_amd64.deb ... 379s Unpacking r-cran-survival (3.8-3-1) ... 380s Selecting previously unselected package r-bioc-multtest. 380s Preparing to unpack .../210-r-bioc-multtest_2.62.0-2_amd64.deb ... 380s Unpacking r-bioc-multtest (2.62.0-2) ... 380s Selecting previously unselected package r-cran-xml. 380s Preparing to unpack .../211-r-cran-xml_3.99-0.18-1_amd64.deb ... 380s Unpacking r-cran-xml (3.99-0.18-1) ... 380s Selecting previously unselected package r-cran-rcurl. 380s Preparing to unpack .../212-r-cran-rcurl_1.98-1.16+dfsg-1_amd64.deb ... 380s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 380s Selecting previously unselected package r-cran-rjson. 380s Preparing to unpack .../213-r-cran-rjson_0.2.23-1_amd64.deb ... 380s Unpacking r-cran-rjson (0.2.23-1) ... 380s Selecting previously unselected package r-cran-yaml. 380s Preparing to unpack .../214-r-cran-yaml_2.3.10-1_amd64.deb ... 380s Unpacking r-cran-yaml (2.3.10-1) ... 380s Selecting previously unselected package r-cran-restfulr. 380s Preparing to unpack .../215-r-cran-restfulr_0.0.15-1_amd64.deb ... 380s Unpacking r-cran-restfulr (0.0.15-1) ... 380s Selecting previously unselected package r-bioc-rtracklayer. 380s Preparing to unpack .../216-r-bioc-rtracklayer_1.66.0-2_amd64.deb ... 380s Unpacking r-bioc-rtracklayer (1.66.0-2) ... 380s Selecting previously unselected package r-cran-digest. 380s Preparing to unpack .../217-r-cran-digest_0.6.37-1_amd64.deb ... 380s Unpacking r-cran-digest (0.6.37-1) ... 380s Selecting previously unselected package r-cran-ape. 380s Preparing to unpack .../218-r-cran-ape_5.8-1_amd64.deb ... 380s Unpacking r-cran-ape (5.8-1) ... 380s Selecting previously unselected package r-cran-base64enc. 380s Preparing to unpack .../219-r-cran-base64enc_0.1-3-3_amd64.deb ... 380s Unpacking r-cran-base64enc (0.1-3-3) ... 380s Selecting previously unselected package r-cran-brio. 380s Preparing to unpack .../220-r-cran-brio_1.1.5-1_amd64.deb ... 380s Unpacking r-cran-brio (1.1.5-1) ... 380s Selecting previously unselected package r-cran-fastmap. 380s Preparing to unpack .../221-r-cran-fastmap_1.2.0-1_amd64.deb ... 380s Unpacking r-cran-fastmap (1.2.0-1) ... 380s Selecting previously unselected package r-cran-cachem. 380s Preparing to unpack .../222-r-cran-cachem_1.1.0-1_amd64.deb ... 380s Unpacking r-cran-cachem (1.1.0-1) ... 380s Selecting previously unselected package r-cran-htmltools. 380s Preparing to unpack .../223-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 380s Unpacking r-cran-htmltools (0.5.8.1-1) ... 380s Selecting previously unselected package r-cran-jquerylib. 380s Preparing to unpack .../224-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 380s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 380s Selecting previously unselected package r-cran-memoise. 380s Preparing to unpack .../225-r-cran-memoise_2.0.1-1_all.deb ... 380s Unpacking r-cran-memoise (2.0.1-1) ... 380s Selecting previously unselected package r-cran-fs. 380s Preparing to unpack .../226-r-cran-fs_1.6.4+dfsg-1_amd64.deb ... 380s Unpacking r-cran-fs (1.6.4+dfsg-1) ... 380s Selecting previously unselected package r-cran-rappdirs. 380s Preparing to unpack .../227-r-cran-rappdirs_0.3.3-1_amd64.deb ... 380s Unpacking r-cran-rappdirs (0.3.3-1) ... 380s Selecting previously unselected package r-cran-sass. 380s Preparing to unpack .../228-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 380s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 380s Selecting previously unselected package r-cran-bslib. 380s Preparing to unpack .../229-r-cran-bslib_0.7.0+dfsg-1_all.deb ... 380s Unpacking r-cran-bslib (0.7.0+dfsg-1) ... 380s Selecting previously unselected package r-cran-ps. 380s Preparing to unpack .../230-r-cran-ps_1.8.0-1_amd64.deb ... 380s Unpacking r-cran-ps (1.8.0-1) ... 380s Selecting previously unselected package r-cran-processx. 380s Preparing to unpack .../231-r-cran-processx_3.8.4-1_amd64.deb ... 380s Unpacking r-cran-processx (3.8.4-1) ... 380s Selecting previously unselected package r-cran-callr. 380s Preparing to unpack .../232-r-cran-callr_3.7.6-1_all.deb ... 380s Unpacking r-cran-callr (3.7.6-1) ... 380s Selecting previously unselected package r-cran-class. 380s Preparing to unpack .../233-r-cran-class_7.3-23-1_amd64.deb ... 380s Unpacking r-cran-class (7.3-23-1) ... 381s Selecting previously unselected package r-cran-proxy. 381s Preparing to unpack .../234-r-cran-proxy_0.4-27-1_amd64.deb ... 381s Unpacking r-cran-proxy (0.4-27-1) ... 381s Selecting previously unselected package r-cran-e1071. 381s Preparing to unpack .../235-r-cran-e1071_1.7-16-1_amd64.deb ... 381s Unpacking r-cran-e1071 (1.7-16-1) ... 381s Selecting previously unselected package r-cran-iterators. 381s Preparing to unpack .../236-r-cran-iterators_1.0.14-1_all.deb ... 381s Unpacking r-cran-iterators (1.0.14-1) ... 381s Selecting previously unselected package r-cran-foreach. 381s Preparing to unpack .../237-r-cran-foreach_1.5.2-1_all.deb ... 381s Unpacking r-cran-foreach (1.5.2-1) ... 381s Selecting previously unselected package r-cran-data.table. 381s Preparing to unpack .../238-r-cran-data.table_1.16.4+dfsg-1_amd64.deb ... 381s Unpacking r-cran-data.table (1.16.4+dfsg-1) ... 381s Selecting previously unselected package r-cran-modelmetrics. 381s Preparing to unpack .../239-r-cran-modelmetrics_1.2.2.2-1build1_amd64.deb ... 381s Unpacking r-cran-modelmetrics (1.2.2.2-1build1) ... 381s Selecting previously unselected package r-cran-plyr. 381s Preparing to unpack .../240-r-cran-plyr_1.8.9-1_amd64.deb ... 381s Unpacking r-cran-plyr (1.8.9-1) ... 381s Selecting previously unselected package r-cran-proc. 381s Preparing to unpack .../241-r-cran-proc_1.18.5-1_amd64.deb ... 381s Unpacking r-cran-proc (1.18.5-1) ... 381s Selecting previously unselected package r-cran-generics. 381s Preparing to unpack .../242-r-cran-generics_0.1.3-1_all.deb ... 381s Unpacking r-cran-generics (0.1.3-1) ... 381s Selecting previously unselected package r-cran-tidyselect. 381s Preparing to unpack .../243-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 381s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 381s Selecting previously unselected package r-cran-dplyr. 381s Preparing to unpack .../244-r-cran-dplyr_1.1.4-4_amd64.deb ... 381s Unpacking r-cran-dplyr (1.1.4-4) ... 381s Selecting previously unselected package r-cran-tzdb. 381s Preparing to unpack .../245-r-cran-tzdb_0.4.0-2_amd64.deb ... 381s Unpacking r-cran-tzdb (0.4.0-2) ... 381s Selecting previously unselected package r-cran-clock. 381s Preparing to unpack .../246-r-cran-clock_0.7.1-1_amd64.deb ... 381s Unpacking r-cran-clock (0.7.1-1) ... 381s Selecting previously unselected package r-cran-gower. 381s Preparing to unpack .../247-r-cran-gower_1.0.1-1_amd64.deb ... 381s Unpacking r-cran-gower (1.0.1-1) ... 381s Selecting previously unselected package r-cran-hardhat. 381s Preparing to unpack .../248-r-cran-hardhat_1.4.0+dfsg-1_all.deb ... 381s Unpacking r-cran-hardhat (1.4.0+dfsg-1) ... 381s Selecting previously unselected package r-cran-rpart. 381s Preparing to unpack .../249-r-cran-rpart_4.1.24-1_amd64.deb ... 381s Unpacking r-cran-rpart (4.1.24-1) ... 381s Selecting previously unselected package r-cran-nnet. 381s Preparing to unpack .../250-r-cran-nnet_7.3-20-1_amd64.deb ... 381s Unpacking r-cran-nnet (7.3-20-1) ... 381s Selecting previously unselected package r-cran-shape. 381s Preparing to unpack .../251-r-cran-shape_1.4.6.1-1_all.deb ... 381s Unpacking r-cran-shape (1.4.6.1-1) ... 381s Selecting previously unselected package r-cran-diagram. 381s Preparing to unpack .../252-r-cran-diagram_1.6.5-2_all.deb ... 381s Unpacking r-cran-diagram (1.6.5-2) ... 381s Selecting previously unselected package r-cran-kernsmooth. 381s Preparing to unpack .../253-r-cran-kernsmooth_2.23-26-1_amd64.deb ... 381s Unpacking r-cran-kernsmooth (2.23-26-1) ... 381s Selecting previously unselected package r-cran-globals. 381s Preparing to unpack .../254-r-cran-globals_0.16.3-1_all.deb ... 381s Unpacking r-cran-globals (0.16.3-1) ... 381s Selecting previously unselected package r-cran-listenv. 381s Preparing to unpack .../255-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 381s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 381s Selecting previously unselected package r-cran-parallelly. 381s Preparing to unpack .../256-r-cran-parallelly_1.38.0-1_amd64.deb ... 381s Unpacking r-cran-parallelly (1.38.0-1) ... 381s Selecting previously unselected package r-cran-future. 381s Preparing to unpack .../257-r-cran-future_1.34.0+dfsg-1_all.deb ... 381s Unpacking r-cran-future (1.34.0+dfsg-1) ... 381s Selecting previously unselected package r-cran-future.apply. 381s Preparing to unpack .../258-r-cran-future.apply_1.11.2+dfsg-1_all.deb ... 381s Unpacking r-cran-future.apply (1.11.2+dfsg-1) ... 381s Selecting previously unselected package r-cran-numderiv. 381s Preparing to unpack .../259-r-cran-numderiv_2016.8-1.1-3_all.deb ... 381s Unpacking r-cran-numderiv (2016.8-1.1-3) ... 382s Selecting previously unselected package r-cran-progressr. 382s Preparing to unpack .../260-r-cran-progressr_0.14.0-1_all.deb ... 382s Unpacking r-cran-progressr (0.14.0-1) ... 382s Selecting previously unselected package r-cran-squarem. 382s Preparing to unpack .../261-r-cran-squarem_2021.1-1_all.deb ... 382s Unpacking r-cran-squarem (2021.1-1) ... 382s Selecting previously unselected package r-cran-lava. 382s Preparing to unpack .../262-r-cran-lava_1.7.3+dfsg-1_all.deb ... 382s Unpacking r-cran-lava (1.7.3+dfsg-1) ... 382s Selecting previously unselected package r-cran-prodlim. 382s Preparing to unpack .../263-r-cran-prodlim_2024.06.25-1_amd64.deb ... 382s Unpacking r-cran-prodlim (2024.06.25-1) ... 382s Selecting previously unselected package r-cran-ipred. 382s Preparing to unpack .../264-r-cran-ipred_0.9-15-1_amd64.deb ... 382s Unpacking r-cran-ipred (0.9-15-1) ... 382s Selecting previously unselected package r-cran-timechange. 382s Preparing to unpack .../265-r-cran-timechange_0.3.0-1_amd64.deb ... 382s Unpacking r-cran-timechange (0.3.0-1) ... 382s Selecting previously unselected package r-cran-lubridate. 382s Preparing to unpack .../266-r-cran-lubridate_1.9.3+dfsg-1_amd64.deb ... 382s Unpacking r-cran-lubridate (1.9.3+dfsg-1) ... 382s Selecting previously unselected package r-cran-purrr. 382s Preparing to unpack .../267-r-cran-purrr_1.0.2-1_amd64.deb ... 382s Unpacking r-cran-purrr (1.0.2-1) ... 382s Selecting previously unselected package r-cran-stringi. 382s Preparing to unpack .../268-r-cran-stringi_1.8.4-1build1_amd64.deb ... 382s Unpacking r-cran-stringi (1.8.4-1build1) ... 382s Selecting previously unselected package r-cran-stringr. 382s Preparing to unpack .../269-r-cran-stringr_1.5.1-1_all.deb ... 382s Unpacking r-cran-stringr (1.5.1-1) ... 382s Selecting previously unselected package r-cran-tidyr. 382s Preparing to unpack .../270-r-cran-tidyr_1.3.1-1_amd64.deb ... 382s Unpacking r-cran-tidyr (1.3.1-1) ... 382s Selecting previously unselected package r-cran-timedate. 382s Preparing to unpack .../271-r-cran-timedate_4041.110-1_amd64.deb ... 382s Unpacking r-cran-timedate (4041.110-1) ... 382s Selecting previously unselected package r-cran-recipes. 382s Preparing to unpack .../272-r-cran-recipes_1.1.0+dfsg-1_all.deb ... 382s Unpacking r-cran-recipes (1.1.0+dfsg-1) ... 382s Selecting previously unselected package r-cran-reshape2. 382s Preparing to unpack .../273-r-cran-reshape2_1.4.4-2build1_amd64.deb ... 382s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 382s Selecting previously unselected package r-cran-caret. 382s Preparing to unpack .../274-r-cran-caret_6.0-94+dfsg-1_amd64.deb ... 382s Unpacking r-cran-caret (6.0-94+dfsg-1) ... 382s Selecting previously unselected package r-cran-catools. 382s Preparing to unpack .../275-r-cran-catools_1.18.2-1_amd64.deb ... 382s Unpacking r-cran-catools (1.18.2-1) ... 382s Selecting previously unselected package r-cran-cluster. 382s Preparing to unpack .../276-r-cran-cluster_2.1.8-1_amd64.deb ... 382s Unpacking r-cran-cluster (2.1.8-1) ... 382s Selecting previously unselected package r-cran-evaluate. 382s Preparing to unpack .../277-r-cran-evaluate_1.0.0-1_all.deb ... 382s Unpacking r-cran-evaluate (1.0.0-1) ... 382s Selecting previously unselected package r-cran-xfun. 382s Preparing to unpack .../278-r-cran-xfun_0.49+dfsg-1_amd64.deb ... 382s Unpacking r-cran-xfun (0.49+dfsg-1) ... 382s Selecting previously unselected package r-cran-highr. 382s Preparing to unpack .../279-r-cran-highr_0.11+dfsg-1_all.deb ... 382s Unpacking r-cran-highr (0.11+dfsg-1) ... 382s Selecting previously unselected package libjs-mathjax. 382s Preparing to unpack .../280-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 382s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 383s Selecting previously unselected package r-cran-knitr. 383s Preparing to unpack .../281-r-cran-knitr_1.49+dfsg-1_all.deb ... 383s Unpacking r-cran-knitr (1.49+dfsg-1) ... 383s Selecting previously unselected package r-cran-fontawesome. 383s Preparing to unpack .../282-r-cran-fontawesome_0.5.2-1_all.deb ... 383s Unpacking r-cran-fontawesome (0.5.2-1) ... 383s Selecting previously unselected package r-cran-tinytex. 383s Preparing to unpack .../283-r-cran-tinytex_0.53-1_all.deb ... 383s Unpacking r-cran-tinytex (0.53-1) ... 383s Selecting previously unselected package libjs-modernizr. 383s Preparing to unpack .../284-libjs-modernizr_3.13.0-0.1_all.deb ... 383s Unpacking libjs-modernizr (3.13.0-0.1) ... 383s Selecting previously unselected package r-cran-later. 383s Preparing to unpack .../285-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 383s Unpacking r-cran-later (1.3.2+dfsg-1) ... 383s Selecting previously unselected package r-cran-promises. 383s Preparing to unpack .../286-r-cran-promises_1.3.0+dfsg-1_amd64.deb ... 383s Unpacking r-cran-promises (1.3.0+dfsg-1) ... 383s Selecting previously unselected package r-cran-httpuv. 383s Preparing to unpack .../287-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 383s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 383s Selecting previously unselected package r-cran-xtable. 383s Preparing to unpack .../288-r-cran-xtable_1%3a1.8-4-2_all.deb ... 383s Unpacking r-cran-xtable (1:1.8-4-2) ... 383s Selecting previously unselected package r-cran-sourcetools. 383s Preparing to unpack .../289-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 383s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 383s Selecting previously unselected package r-cran-commonmark. 383s Preparing to unpack .../290-r-cran-commonmark_1.9.2-2_amd64.deb ... 383s Unpacking r-cran-commonmark (1.9.2-2) ... 383s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 383s Preparing to unpack .../291-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 383s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 383s Selecting previously unselected package r-cran-shiny. 383s Preparing to unpack .../292-r-cran-shiny_1.9.1+dfsg-1_all.deb ... 383s Unpacking r-cran-shiny (1.9.1+dfsg-1) ... 383s Selecting previously unselected package r-cran-rmarkdown. 383s Preparing to unpack .../293-r-cran-rmarkdown_2.28+dfsg-1_all.deb ... 383s Unpacking r-cran-rmarkdown (2.28+dfsg-1) ... 383s Selecting previously unselected package r-cran-htmlwidgets. 383s Preparing to unpack .../294-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 383s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 384s Selecting previously unselected package r-cran-miniui. 384s Preparing to unpack .../295-r-cran-miniui_0.1.1.1-3build1_all.deb ... 384s Unpacking r-cran-miniui (0.1.1.1-3build1) ... 384s Selecting previously unselected package r-cran-shinyjs. 384s Preparing to unpack .../296-r-cran-shinyjs_2.1.0-1_all.deb ... 384s Unpacking r-cran-shinyjs (2.1.0-1) ... 384s Selecting previously unselected package r-cran-colourpicker. 384s Preparing to unpack .../297-r-cran-colourpicker_1.3.0+dfsg-1_all.deb ... 384s Unpacking r-cran-colourpicker (1.3.0+dfsg-1) ... 384s Selecting previously unselected package r-cran-conquer. 384s Preparing to unpack .../298-r-cran-conquer_1.3.3-1_amd64.deb ... 384s Unpacking r-cran-conquer (1.3.3-1) ... 384s Selecting previously unselected package r-cran-cowplot. 384s Preparing to unpack .../299-r-cran-cowplot_1.1.3+dfsg-1_all.deb ... 384s Unpacking r-cran-cowplot (1.1.3+dfsg-1) ... 384s Selecting previously unselected package r-cran-lazyeval. 384s Preparing to unpack .../300-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 384s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 384s Selecting previously unselected package r-cran-crosstalk. 384s Preparing to unpack .../301-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 384s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 384s Selecting previously unselected package r-cran-deldir. 384s Preparing to unpack .../302-r-cran-deldir_2.0-4-1build1_amd64.deb ... 384s Unpacking r-cran-deldir (2.0-4-1build1) ... 384s Selecting previously unselected package r-cran-deoptimr. 384s Preparing to unpack .../303-r-cran-deoptimr_1.1-3-1-1_all.deb ... 384s Unpacking r-cran-deoptimr (1.1-3-1-1) ... 384s Selecting previously unselected package r-cran-desc. 384s Preparing to unpack .../304-r-cran-desc_1.4.3-1_all.deb ... 384s Unpacking r-cran-desc (1.4.3-1) ... 384s Selecting previously unselected package r-cran-diffobj. 384s Preparing to unpack .../305-r-cran-diffobj_0.3.5-1_amd64.deb ... 384s Unpacking r-cran-diffobj (0.3.5-1) ... 384s Selecting previously unselected package r-cran-dotcall64. 384s Preparing to unpack .../306-r-cran-dotcall64_1.1-1-1_amd64.deb ... 384s Unpacking r-cran-dotcall64 (1.1-1-1) ... 384s Selecting previously unselected package r-cran-sitmo. 384s Preparing to unpack .../307-r-cran-sitmo_2.0.2-1_amd64.deb ... 384s Unpacking r-cran-sitmo (2.0.2-1) ... 384s Selecting previously unselected package r-cran-dqrng. 384s Preparing to unpack .../308-r-cran-dqrng_0.3.2+dfsg-1_amd64.deb ... 384s Unpacking r-cran-dqrng (0.3.2+dfsg-1) ... 384s Selecting previously unselected package r-cran-fastdummies. 384s Preparing to unpack .../309-r-cran-fastdummies_1.7.4-1_all.deb ... 384s Unpacking r-cran-fastdummies (1.7.4-1) ... 384s Selecting previously unselected package r-cran-fitdistrplus. 384s Preparing to unpack .../310-r-cran-fitdistrplus_1.2-1-1_all.deb ... 384s Unpacking r-cran-fitdistrplus (1.2-1-1) ... 384s Selecting previously unselected package r-cran-fnn. 384s Preparing to unpack .../311-r-cran-fnn_1.1.4.1-1_amd64.deb ... 384s Unpacking r-cran-fnn (1.1.4.1-1) ... 384s Selecting previously unselected package r-cran-gtools. 384s Preparing to unpack .../312-r-cran-gtools_3.9.5-1_amd64.deb ... 384s Unpacking r-cran-gtools (3.9.5-1) ... 384s Selecting previously unselected package r-cran-gdata. 384s Preparing to unpack .../313-r-cran-gdata_3.0.1-1_all.deb ... 384s Unpacking r-cran-gdata (3.0.1-1) ... 384s Selecting previously unselected package r-cran-ggrepel. 384s Preparing to unpack .../314-r-cran-ggrepel_0.9.5-2_amd64.deb ... 384s Unpacking r-cran-ggrepel (0.9.5-2) ... 384s Selecting previously unselected package r-cran-ggridges. 384s Preparing to unpack .../315-r-cran-ggridges_0.5.6-1_all.deb ... 384s Unpacking r-cran-ggridges (0.5.6-1) ... 384s Selecting previously unselected package r-cran-goftest. 384s Preparing to unpack .../316-r-cran-goftest_1.2-3-1_amd64.deb ... 384s Unpacking r-cran-goftest (1.2-3-1) ... 384s Selecting previously unselected package r-cran-gplots. 384s Preparing to unpack .../317-r-cran-gplots_3.2.0-1_all.deb ... 384s Unpacking r-cran-gplots (3.2.0-1) ... 384s Selecting previously unselected package r-cran-gridextra. 384s Preparing to unpack .../318-r-cran-gridextra_2.3-3build1_all.deb ... 384s Unpacking r-cran-gridextra (2.3-3build1) ... 384s Selecting previously unselected package r-cran-rprojroot. 384s Preparing to unpack .../319-r-cran-rprojroot_2.0.4-1_all.deb ... 384s Unpacking r-cran-rprojroot (2.0.4-1) ... 385s Selecting previously unselected package r-cran-here. 385s Preparing to unpack .../320-r-cran-here_1.0.1-2_all.deb ... 385s Unpacking r-cran-here (1.0.1-2) ... 385s Selecting previously unselected package r-cran-ica. 385s Preparing to unpack .../321-r-cran-ica_1.0-3-1_all.deb ... 385s Unpacking r-cran-ica (1.0-3-1) ... 385s Selecting previously unselected package r-cran-igraph. 385s Preparing to unpack .../322-r-cran-igraph_2.0.3-1_amd64.deb ... 385s Unpacking r-cran-igraph (2.0.3-1) ... 385s Selecting previously unselected package r-cran-irlba. 385s Preparing to unpack .../323-r-cran-irlba_2.3.5.1-4_amd64.deb ... 385s Unpacking r-cran-irlba (2.3.5.1-4) ... 385s Selecting previously unselected package r-cran-kernlab. 385s Preparing to unpack .../324-r-cran-kernlab_0.9-33-1_amd64.deb ... 385s Unpacking r-cran-kernlab (0.9-33-1) ... 385s Selecting previously unselected package r-cran-rcpptoml. 385s Preparing to unpack .../325-r-cran-rcpptoml_0.2.2+dfsg-1_amd64.deb ... 385s Unpacking r-cran-rcpptoml (0.2.2+dfsg-1) ... 385s Selecting previously unselected package r-cran-png. 385s Preparing to unpack .../326-r-cran-png_0.1-8-1build2_amd64.deb ... 385s Unpacking r-cran-png (0.1-8-1build2) ... 385s Selecting previously unselected package r-cran-reticulate. 385s Preparing to unpack .../327-r-cran-reticulate_1.39.0+dfsg-1_amd64.deb ... 385s Unpacking r-cran-reticulate (1.39.0+dfsg-1) ... 385s Selecting previously unselected package r-cran-leiden. 385s Preparing to unpack .../328-r-cran-leiden_0.4.3.1+dfsg-1_all.deb ... 385s Unpacking r-cran-leiden (0.4.3.1+dfsg-1) ... 385s Selecting previously unselected package r-cran-zoo. 385s Preparing to unpack .../329-r-cran-zoo_1.8-12-2_amd64.deb ... 385s Unpacking r-cran-zoo (1.8-12-2) ... 385s Selecting previously unselected package r-cran-lmtest. 385s Preparing to unpack .../330-r-cran-lmtest_0.9.40-1_amd64.deb ... 385s Unpacking r-cran-lmtest (0.9.40-1) ... 385s Selecting previously unselected package r-cran-mathjaxr. 385s Preparing to unpack .../331-r-cran-mathjaxr_1.6-0-1_all.deb ... 385s Unpacking r-cran-mathjaxr (1.6-0-1) ... 385s Selecting previously unselected package r-cran-matrixmodels. 385s Preparing to unpack .../332-r-cran-matrixmodels_0.5-3-1_all.deb ... 385s Unpacking r-cran-matrixmodels (0.5-3-1) ... 385s Selecting previously unselected package r-cran-rbibutils. 385s Preparing to unpack .../333-r-cran-rbibutils_2.3-1_amd64.deb ... 385s Unpacking r-cran-rbibutils (2.3-1) ... 385s Selecting previously unselected package r-cran-rdpack. 385s Preparing to unpack .../334-r-cran-rdpack_2.6.2-1_all.deb ... 385s Unpacking r-cran-rdpack (2.6.2-1) ... 385s Selecting previously unselected package r-cran-mnormt. 385s Preparing to unpack .../335-r-cran-mnormt_2.1.1-2_amd64.deb ... 385s Unpacking r-cran-mnormt (2.1.1-2) ... 385s Selecting previously unselected package r-cran-sparsem. 385s Preparing to unpack .../336-r-cran-sparsem_1.84-2-1_amd64.deb ... 385s Unpacking r-cran-sparsem (1.84-2-1) ... 385s Selecting previously unselected package r-cran-quantreg. 385s Preparing to unpack .../337-r-cran-quantreg_5.99.1-1_amd64.deb ... 385s Unpacking r-cran-quantreg (5.99.1-1) ... 385s Selecting previously unselected package r-cran-sn. 385s Preparing to unpack .../338-r-cran-sn_2.1.1-2_all.deb ... 385s Unpacking r-cran-sn (2.1.1-2) ... 385s Selecting previously unselected package r-cran-mvtnorm. 385s Preparing to unpack .../339-r-cran-mvtnorm_1.3-3-1_amd64.deb ... 385s Unpacking r-cran-mvtnorm (1.3-3-1) ... 385s Selecting previously unselected package r-cran-tfisher. 385s Preparing to unpack .../340-r-cran-tfisher_0.2.0-3_all.deb ... 385s Unpacking r-cran-tfisher (0.2.0-3) ... 385s Selecting previously unselected package r-cran-plotrix. 385s Preparing to unpack .../341-r-cran-plotrix_3.8-4-1_all.deb ... 385s Unpacking r-cran-plotrix (3.8-4-1) ... 385s Selecting previously unselected package r-cran-th.data. 385s Preparing to unpack .../342-r-cran-th.data_1.1-2-2_all.deb ... 385s Unpacking r-cran-th.data (1.1-2-2) ... 385s Selecting previously unselected package r-cran-sandwich. 385s Preparing to unpack .../343-r-cran-sandwich_3.1-1-1_all.deb ... 385s Unpacking r-cran-sandwich (3.1-1-1) ... 385s Selecting previously unselected package r-cran-multcomp. 385s Preparing to unpack .../344-r-cran-multcomp_1.4-26-2_all.deb ... 385s Unpacking r-cran-multcomp (1.4-26-2) ... 385s Selecting previously unselected package r-cran-mutoss. 386s Preparing to unpack .../345-r-cran-mutoss_0.1-13-1_all.deb ... 386s Unpacking r-cran-mutoss (0.1-13-1) ... 386s Selecting previously unselected package r-cran-robustbase. 386s Preparing to unpack .../346-r-cran-robustbase_0.99-4-1-1_amd64.deb ... 386s Unpacking r-cran-robustbase (0.99-4-1-1) ... 386s Selecting previously unselected package r-cran-qqconf. 386s Preparing to unpack .../347-r-cran-qqconf_1.3.2+dfsg-1_amd64.deb ... 386s Unpacking r-cran-qqconf (1.3.2+dfsg-1) ... 386s Selecting previously unselected package r-cran-metap. 386s Preparing to unpack .../348-r-cran-metap_1.11-1_all.deb ... 386s Unpacking r-cran-metap (1.11-1) ... 386s Selecting previously unselected package r-cran-plotly. 386s Preparing to unpack .../349-r-cran-plotly_4.10.4+dfsg-2_all.deb ... 386s Unpacking r-cran-plotly (4.10.4+dfsg-2) ... 386s Selecting previously unselected package r-cran-segmented. 386s Preparing to unpack .../350-r-cran-segmented_2.1-3-1_all.deb ... 386s Unpacking r-cran-segmented (2.1-3-1) ... 386s Selecting previously unselected package r-cran-mixtools. 386s Preparing to unpack .../351-r-cran-mixtools_2.0.0-1_amd64.deb ... 386s Unpacking r-cran-mixtools (2.0.0-1) ... 386s Selecting previously unselected package r-cran-patchwork. 386s Preparing to unpack .../352-r-cran-patchwork_1.3.0-1_all.deb ... 386s Unpacking r-cran-patchwork (1.3.0-1) ... 386s Selecting previously unselected package r-cran-pbapply. 386s Preparing to unpack .../353-r-cran-pbapply_1.7-2-1_all.deb ... 386s Unpacking r-cran-pbapply (1.7-2-1) ... 386s Selecting previously unselected package r-cran-pkgbuild. 386s Preparing to unpack .../354-r-cran-pkgbuild_1.4.4-1_all.deb ... 386s Unpacking r-cran-pkgbuild (1.4.4-1) ... 386s Selecting previously unselected package r-cran-pkgload. 386s Preparing to unpack .../355-r-cran-pkgload_1.4.0-1_all.deb ... 386s Unpacking r-cran-pkgload (1.4.0-1) ... 386s Selecting previously unselected package r-cran-polyclip. 386s Preparing to unpack .../356-r-cran-polyclip_1.10-7-1_amd64.deb ... 386s Unpacking r-cran-polyclip (1.10-7-1) ... 386s Selecting previously unselected package r-cran-praise. 386s Preparing to unpack .../357-r-cran-praise_1.0.0-4build1_all.deb ... 386s Unpacking r-cran-praise (1.0.0-4build1) ... 386s Selecting previously unselected package r-cran-r.methodss3. 386s Preparing to unpack .../358-r-cran-r.methodss3_1.8.2-1_all.deb ... 386s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 386s Selecting previously unselected package r-cran-r.oo. 386s Preparing to unpack .../359-r-cran-r.oo_1.26.0-1_all.deb ... 386s Unpacking r-cran-r.oo (1.26.0-1) ... 386s Selecting previously unselected package r-cran-r.utils. 386s Preparing to unpack .../360-r-cran-r.utils_2.12.3-1_all.deb ... 386s Unpacking r-cran-r.utils (2.12.3-1) ... 386s Selecting previously unselected package r-cran-rann. 386s Preparing to unpack .../361-r-cran-rann_2.6.2-1_amd64.deb ... 386s Unpacking r-cran-rann (2.6.2-1) ... 386s Selecting previously unselected package r-cran-rcppannoy. 386s Preparing to unpack .../362-r-cran-rcppannoy_0.0.22-1_amd64.deb ... 386s Unpacking r-cran-rcppannoy (0.0.22-1) ... 386s Selecting previously unselected package r-cran-rcppeigen. 386s Preparing to unpack .../363-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 386s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 387s Selecting previously unselected package r-cran-rcpphnsw. 387s Preparing to unpack .../364-r-cran-rcpphnsw_0.5.0+ds-1_amd64.deb ... 387s Unpacking r-cran-rcpphnsw (0.5.0+ds-1) ... 387s Selecting previously unselected package r-cran-rcppprogress. 387s Preparing to unpack .../365-r-cran-rcppprogress_0.4.2-2build1_all.deb ... 387s Unpacking r-cran-rcppprogress (0.4.2-2build1) ... 387s Selecting previously unselected package r-cran-rocr. 387s Preparing to unpack .../366-r-cran-rocr_1.0-11-3_all.deb ... 387s Unpacking r-cran-rocr (1.0-11-3) ... 387s Selecting previously unselected package r-cran-rspectra. 387s Preparing to unpack .../367-r-cran-rspectra_0.16-2-1_amd64.deb ... 387s Unpacking r-cran-rspectra (0.16-2-1) ... 387s Selecting previously unselected package r-cran-rsvd. 387s Preparing to unpack .../368-r-cran-rsvd_1.0.5-1_all.deb ... 387s Unpacking r-cran-rsvd (1.0.5-1) ... 387s Selecting previously unselected package r-cran-rtsne. 387s Preparing to unpack .../369-r-cran-rtsne_0.17-1_amd64.deb ... 387s Unpacking r-cran-rtsne (0.17-1) ... 387s Selecting previously unselected package r-cran-scattermore. 387s Preparing to unpack .../370-r-cran-scattermore_1.2-1_amd64.deb ... 387s Unpacking r-cran-scattermore (1.2-1) ... 387s Selecting previously unselected package r-cran-sctransform. 387s Preparing to unpack .../371-r-cran-sctransform_0.4.1-1_amd64.deb ... 387s Unpacking r-cran-sctransform (0.4.1-1) ... 387s Selecting previously unselected package r-cran-sp. 387s Preparing to unpack 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(1.18.2-1) ... 391s Setting up r-cran-rtsne (0.17-1) ... 391s Setting up r-cran-rcpparmadillo (14.2.2-1-1) ... 391s Setting up r-bioc-iranges (2.40.1-2) ... 391s Setting up r-cran-dqrng (0.3.2+dfsg-1) ... 391s Setting up r-cran-tzdb (0.4.0-2) ... 391s Setting up r-cran-reticulate (1.39.0+dfsg-1) ... 391s Setting up r-cran-globals (0.16.3-1) ... 391s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... 391s Setting up r-cran-spam (2.11-0-1) ... 391s Setting up r-cran-restfulr (0.0.15-1) ... 391s Setting up r-cran-gdata (3.0.1-1) ... 391s Setting up r-cran-vctrs (0.6.5-1) ... 391s Setting up r-cran-rcppeigen (0.3.4.0.2-1) ... 391s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 391s Setting up r-cran-rcppannoy (0.0.22-1) ... 391s Setting up r-cran-openssl (2.2.0+dfsg-1) ... 391s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ... 391s Setting up r-cran-stringr (1.5.1-1) ... 391s Setting up r-cran-class (7.3-23-1) ... 391s Setting up r-bioc-biocparallel (1.40.0-2) ... 391s Setting up r-cran-modelmetrics (1.2.2.2-1build1) ... 391s Setting up r-cran-callr (3.7.6-1) ... 391s Setting up r-cran-matrixmodels (0.5-3-1) ... 391s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ... 391s Setting up r-cran-desc (1.4.3-1) ... 391s Setting up r-cran-munsell (0.5.1-1) ... 391s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 391s Setting up r-cran-clock (0.7.1-1) ... 391s Setting up r-cran-sandwich (3.1-1-1) ... 391s Setting up r-cran-proc (1.18.5-1) ... 391s Setting up r-cran-fontawesome (0.5.2-1) ... 391s Setting up r-cran-survival (3.8-3-1) ... 391s Setting up r-cran-igraph (2.0.3-1) ... 391s Setting up r-bioc-biocio (1.16.0+dfsg-2) ... 391s Setting up r-cran-r.oo (1.26.0-1) ... 391s Setting up r-cran-rdpack (2.6.2-1) ... 391s Setting up r-cran-future (1.34.0+dfsg-1) ... 391s Setting up gfortran (4:14.1.0-2ubuntu1) ... 391s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 391s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 391s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 391s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 391s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 391s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 391s Setting up r-cran-reshape2 (1.4.4-2build1) ... 391s Setting up r-cran-rsvd (1.0.5-1) ... 391s Setting up r-cran-future.apply (1.11.2+dfsg-1) ... 391s Setting up r-cran-timechange (0.3.0-1) ... 391s Setting up r-cran-th.data (1.1-2-2) ... 391s Setting up r-cran-httr (1.4.7+dfsg-1) ... 391s Setting up r-cran-gridextra (2.3-3build1) ... 391s Setting up r-cran-scales (1.3.0-1) ... 391s Setting up r-cran-memoise (2.0.1-1) ... 391s Setting up r-cran-lava (1.7.3+dfsg-1) ... 391s Setting up r-cran-promises (1.3.0+dfsg-1) ... 391s Setting up r-cran-purrr (1.0.2-1) ... 391s Setting up r-cran-e1071 (1.7-16-1) ... 391s Setting up r-cran-spatstat.data (3.1-2-1) ... 391s Setting up r-cran-fastdummies (1.7.4-1) ... 391s Setting up r-cran-multcomp (1.4-26-2) ... 391s Setting up r-cran-qqconf (1.3.2+dfsg-1) ... 391s Setting up r-cran-seuratobject (5.0.2-1) ... 391s Setting up r-cran-spatstat.geom (3.2-9-2) ... 391s Setting up r-bioc-xvector (0.46.0-2) ... 391s Setting up r-cran-pkgbuild (1.4.4-1) ... 391s Setting up r-cran-hardhat (1.4.0+dfsg-1) ... 391s Setting up r-cran-dplyr (1.1.4-4) ... 391s Setting up r-cran-rspectra (0.16-2-1) ... 391s Setting up r-cran-gplots (3.2.0-1) ... 391s Setting up r-cran-uwot (0.2.2-1) ... 391s Setting up r-cran-leiden (0.4.3.1+dfsg-1) ... 391s Setting up r-bioc-multtest (2.62.0-2) ... 391s Setting up r-cran-lubridate (1.9.3+dfsg-1) ... 391s Setting up r-cran-pkgload (1.4.0-1) ... 391s Setting up r-cran-r.utils (2.12.3-1) ... 391s Setting up r-cran-rocr (1.0-11-3) ... 391s Setting up r-base-dev (4.4.2-1build1) ... 391s Setting up r-cran-prodlim (2024.06.25-1) ... 391s Setting up r-cran-fitdistrplus (1.2-1-1) ... 391s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 391s Setting up r-bioc-sparsearray (1.6.0+dfsg-2) ... 391s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 391s Setting up r-cran-scattermore (1.2-1) ... 391s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 391s Setting up r-cran-rpart (4.1.24-1) ... 391s Setting up r-cran-spatstat.random (3.2-3-1) ... 391s Setting up r-cran-ipred (0.9-15-1) ... 391s Setting up r-cran-testthat (3.2.1.1-1) ... 391s Setting up r-bioc-genomeinfodb (1.42.1+dfsg-2) ... 391s Setting up r-cran-bslib (0.7.0+dfsg-1) ... 391s Setting up r-cran-spatstat.explore (3.2-7-1) ... 391s Setting up r-cran-ggrepel (0.9.5-2) ... 391s Setting up r-cran-tidyr (1.3.1-1) ... 391s Setting up r-cran-recipes (1.1.0+dfsg-1) ... 391s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 391s Setting up r-cran-mutoss (0.1-13-1) ... 391s Setting up r-cran-ggridges (0.5.6-1) ... 391s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 391s Setting up r-cran-cowplot (1.1.3+dfsg-1) ... 391s Setting up r-cran-sctransform (0.4.1-1) ... 391s Setting up r-cran-patchwork (1.3.0-1) ... 391s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 391s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 391s Setting up r-cran-caret (6.0-94+dfsg-1) ... 391s Setting up r-cran-shiny (1.9.1+dfsg-1) ... 391s Setting up r-cran-shinyjs (2.1.0-1) ... 391s Setting up r-cran-miniui (0.1.1.1-3build1) ... 391s Setting up r-cran-rmarkdown (2.28+dfsg-1) ... 391s Setting up r-cran-conquer (1.3.3-1) ... 391s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 391s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 391s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 391s Setting up r-cran-quantreg (5.99.1-1) ... 391s Setting up r-cran-sn (2.1.1-2) ... 391s Setting up r-bioc-deseq2 (1.46.0+dfsg-2) ... 391s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 391s Setting up r-cran-colourpicker (1.3.0+dfsg-1) ... 391s Setting up r-cran-tfisher (0.2.0-3) ... 391s Setting up r-bioc-genomicalignments (1.42.0-2) ... 391s Setting up r-cran-metap (1.11-1) ... 391s Setting up r-bioc-rtracklayer (1.66.0-2) ... 391s Setting up r-cran-plotly (4.10.4+dfsg-2) ... 391s Setting up r-cran-mixtools (2.0.0-1) ... 391s Setting up r-cran-seurat (5.1.0-1) ... 391s Processing triggers for man-db (2.13.0-1) ... 392s Processing triggers for install-info (7.1.1-1) ... 392s Processing triggers for libc-bin (2.40-4ubuntu1) ... 394s autopkgtest [12:08:23]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 394s autopkgtest [12:08:23]: test pkg-r-autopkgtest: [----------------------- 394s Test: Try to load the R library Seurat 394s 394s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 394s Copyright (C) 2024 The R Foundation for Statistical Computing 394s Platform: x86_64-pc-linux-gnu 394s 394s R is free software and comes with ABSOLUTELY NO WARRANTY. 394s You are welcome to redistribute it under certain conditions. 394s Type 'license()' or 'licence()' for distribution details. 394s 394s R is a collaborative project with many contributors. 394s Type 'contributors()' for more information and 394s 'citation()' on how to cite R or R packages in publications. 394s 394s Type 'demo()' for some demos, 'help()' for on-line help, or 394s 'help.start()' for an HTML browser interface to help. 394s Type 'q()' to quit R. 394s 394s > library('Seurat') 394s Loading required package: SeuratObject 394s Loading required package: sp 396s ‘SeuratObject’ was built under R 4.4.1 but the current version is 396s 4.4.2; it is recomended that you reinstall ‘SeuratObject’ as the ABI 396s for R may have changed 396s ‘SeuratObject’ was built with package ‘Matrix’ 1.7.0 but the current 396s version is 1.7.1; it is recomended that you reinstall ‘SeuratObject’ as 396s the ABI for ‘Matrix’ may have changed 396s 396s Attaching package: ‘SeuratObject’ 396s 396s The following objects are masked from ‘package:base’: 396s 396s intersect, t 396s 398s > 398s > 398s Other tests are currently unsupported! 398s They will be progressively added. 398s autopkgtest [12:08:27]: test pkg-r-autopkgtest: -----------------------] 398s autopkgtest [12:08:27]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 398s pkg-r-autopkgtest PASS 399s autopkgtest [12:08:28]: @@@@@@@@@@@@@@@@@@@@ summary 399s run-unit-test PASS 399s pkg-r-autopkgtest PASS 428s nova [W] Skipping flock for amd64 428s Creating nova instance adt-plucky-amd64-r-cran-seurat-20250117-120149-juju-7f2275-prod-proposed-migration-environment-2-0c324a0e-51d6-4942-b633-ceb6c1e1190d from image adt/ubuntu-plucky-amd64-server-20250117.img (UUID 8f35863a-398a-4b7d-9594-544c7b7656c3)... 428s nova [W] Timed out waiting for 9bbb91f7-bd89-4bc3-967d-930e029d3a03 to get deleted. 428s nova [W] Skipping flock for amd64 428s Creating nova instance adt-plucky-amd64-r-cran-seurat-20250117-120149-juju-7f2275-prod-proposed-migration-environment-2-0c324a0e-51d6-4942-b633-ceb6c1e1190d from image adt/ubuntu-plucky-amd64-server-20250117.img (UUID 8f35863a-398a-4b7d-9594-544c7b7656c3)... 428s nova [W] Timed out waiting for 81c3634f-5e1b-49fd-895e-7cd6b71763a0 to get deleted.