0s autopkgtest [22:22:40]: starting date and time: 2025-03-15 22:22:40+0000
0s autopkgtest [22:22:40]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
0s autopkgtest [22:22:40]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.x_5bk5eb/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-qtl --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@lcy02-5.secgroup --name adt-plucky-amd64-r-cran-qtl-20250315-222240-juju-7f2275-prod-proposed-migration-environment-15-4510c63c-4efe-4d6c-a5f3-5d4edc022ead --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
57s autopkgtest [22:23:37]: testbed dpkg architecture: amd64
57s autopkgtest [22:23:37]: testbed apt version: 2.9.31ubuntu1
57s autopkgtest [22:23:37]: @@@@@@@@@@@@@@@@@@@@ test bed setup
57s autopkgtest [22:23:37]: testbed release detected to be: None
57s autopkgtest [22:23:37]: updating testbed package index (apt update)
57s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
57s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
57s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
57s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
57s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB]
57s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB]
57s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB]
57s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB]
57s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB]
57s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B]
57s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B]
57s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB]
57s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB]
57s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB]
57s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B]
57s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB]
57s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B]
58s Fetched 1265 kB in 0s (5980 kB/s)
59s Reading package lists...
59s + lsb_release --codename --short
59s + RELEASE=plucky
59s + cat
59s + [ plucky != trusty ]
59s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade
59s Reading package lists...
59s Building dependency tree...
59s Reading state information...
60s Calculating upgrade...
60s Calculating upgrade...
60s The following package was automatically installed and is no longer required:
60s libnl-genl-3-200
60s Use 'sudo apt autoremove' to remove it.
60s The following NEW packages will be installed:
60s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10
60s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic
60s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic
60s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids
60s The following packages will be upgraded:
60s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu
60s cloud-init cloud-init-base curl dosfstools fwupd gir1.2-girepository-2.0
60s gir1.2-glib-2.0 htop hwdata libapparmor1 libapt-pkg7.0 libaudit-common
60s libaudit1 libbinutils libbrotli1 libcap-ng0 libctf-nobfd0 libctf0
60s libcurl3t64-gnutls libcurl4t64 libestr0 libfwupd3 libgirepository-1.0-1
60s libglib2.0-0t64 libglib2.0-data libgprofng0 libjemalloc2 liblz4-1 liblzma5
60s libmm-glib0 libncurses6 libncursesw6 libnl-3-200 libnl-genl-3-200
60s libnl-route-3-200 libpci3 libpython3-stdlib libpython3.13
60s libpython3.13-minimal libpython3.13-stdlib libselinux1 libsframe1
60s libsqlite3-0 libtinfo6 libxml2 linux-firmware linux-generic
60s linux-headers-generic linux-headers-virtual linux-image-generic
60s linux-image-virtual linux-libc-dev linux-tools-common linux-virtual
60s media-types ncurses-base ncurses-bin ncurses-term pci.ids pciutils
60s pinentry-curses python-apt-common python3 python3-apt python3-cffi-backend
60s python3-dbus python3-gi python3-jinja2 python3-lazr.uri python3-markupsafe
60s python3-minimal python3-systemd python3-yaml python3.13 python3.13-gdbm
60s python3.13-minimal rsync rsyslog strace xz-utils
60s 86 upgraded, 12 newly installed, 0 to remove and 0 not upgraded.
60s Need to get 807 MB of archives.
60s After this operation, 326 MB of additional disk space will be used.
60s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB]
60s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB]
60s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB]
60s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB]
60s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB]
60s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB]
60s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB]
60s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB]
61s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB]
61s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB]
61s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB]
61s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB]
61s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB]
61s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB]
61s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB]
61s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB]
61s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB]
61s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB]
61s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB]
61s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB]
61s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB]
61s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB]
61s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB]
61s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B]
61s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB]
61s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB]
61s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB]
61s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB]
61s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB]
61s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB]
61s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB]
61s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB]
61s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B]
61s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB]
61s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB]
61s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB]
61s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB]
61s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB]
61s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB]
61s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB]
61s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB]
61s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB]
61s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB]
61s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB]
61s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB]
61s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB]
61s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB]
61s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB]
61s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB]
61s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB]
61s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB]
61s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB]
61s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB]
61s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB]
61s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB]
61s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB]
61s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB]
61s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB]
61s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB]
61s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB]
61s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B]
61s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB]
61s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB]
61s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB]
61s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB]
61s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
61s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB]
61s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB]
61s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB]
61s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB]
61s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB]
61s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB]
61s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB]
61s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB]
61s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB]
61s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB]
61s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB]
61s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB]
65s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB]
66s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB]
66s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB]
67s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B]
67s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB]
67s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B]
67s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB]
67s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B]
67s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB]
67s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB]
67s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB]
67s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB]
67s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB]
67s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB]
67s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B]
67s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB]
67s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB]
67s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB]
67s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB]
67s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B]
68s Preconfiguring packages ...
68s Fetched 807 MB in 7s (119 MB/s)
68s (Reading database ...
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(Reading database ... 100%
(Reading database ... 109138 files and directories currently installed.)
68s Preparing to unpack .../ncurses-bin_6.5+20250216-2_amd64.deb ...
68s Unpacking ncurses-bin (6.5+20250216-2) over (6.5+20250216-1) ...
68s Setting up ncurses-bin (6.5+20250216-2) ...
68s (Reading database ...
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(Reading database ... 109138 files and directories currently installed.)
68s Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ...
68s Unpacking ncurses-base (6.5+20250216-2) over (6.5+20250216-1) ...
68s Setting up ncurses-base (6.5+20250216-2) ...
68s (Reading database ...
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(Reading database ... 109138 files and directories currently installed.)
68s Preparing to unpack .../ncurses-term_6.5+20250216-2_all.deb ...
68s Unpacking ncurses-term (6.5+20250216-2) over (6.5+20250216-1) ...
69s Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ...
69s Unpacking liblz4-1:amd64 (1.10.0-4) over (1.10.0-3) ...
69s Setting up liblz4-1:amd64 (1.10.0-4) ...
69s (Reading database ...
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(Reading database ... 109138 files and directories currently installed.)
69s Preparing to unpack .../liblzma5_5.6.4-1_amd64.deb ...
69s Unpacking liblzma5:amd64 (5.6.4-1) over (5.6.3-1) ...
69s Setting up liblzma5:amd64 (5.6.4-1) ...
69s (Reading database ...
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 109138 files and directories currently installed.)
69s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ...
69s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ...
69s Setting up libapt-pkg7.0:amd64 (2.9.33) ...
69s (Reading database ...
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87s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ...
87s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ...
87s Setting up pci.ids (0.0~2025.03.09-1) ...
87s Setting up apt-utils (2.9.33) ...
87s Setting up libdebuginfod-common (0.192-4) ...
87s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ...
87s Setting up bpftool (7.6.0+6.14.0-10.10) ...
87s Setting up libestr0:amd64 (0.1.11-2) ...
87s Setting up libbrotli1:amd64 (1.1.0-2build4) ...
87s Setting up libsqlite3-0:amd64 (3.46.1-2) ...
87s Setting up dosfstools (4.2-1.2) ...
87s Setting up rsyslog (8.2412.0-2ubuntu2) ...
87s info: The user `syslog' is already a member of `adm'.
88s Setting up binutils-common:amd64 (2.44-3ubuntu1) ...
88s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ...
88s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ...
88s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ...
88s Setting up linux-headers-generic (6.14.0-10.10) ...
88s Setting up libjemalloc2:amd64 (5.3.0-3) ...
88s Setting up libsframe1:amd64 (2.44-3ubuntu1) ...
88s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ...
88s Setting up apparmor (4.1.0~beta5-0ubuntu8) ...
88s Installing new version of config file /etc/apparmor.d/openvpn ...
89s Reloading AppArmor profiles
91s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ...
91s No schema files found: doing nothing.
91s Setting up libglib2.0-data (2.84.0-1) ...
91s Setting up libncurses6:amd64 (6.5+20250216-2) ...
91s Setting up strace (6.13+ds-1ubuntu1) ...
91s Setting up xz-utils (5.6.4-1) ...
91s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ...
91s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ...
93s Setting up libncursesw6:amd64 (6.5+20250216-2) ...
93s Setting up libpci3:amd64 (1:3.13.0-2) ...
93s Setting up python-apt-common (2.9.9build1) ...
93s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ...
93s Setting up pnp.ids (0.393-3) ...
93s Setting up libnl-3-200:amd64 (3.7.0-1) ...
93s Setting up python3.13-minimal (3.13.2-2) ...
94s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ...
94s Setting up libbinutils:amd64 (2.44-3ubuntu1) ...
94s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ...
94s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ...
94s Setting up rsync (3.4.1+ds1-3) ...
95s rsync.service is a disabled or a static unit not running, not starting it.
95s Setting up python3.13-gdbm (3.13.2-2) ...
95s Setting up libpython3-stdlib:amd64 (3.13.2-2) ...
95s Setting up ncurses-term (6.5+20250216-2) ...
95s Setting up libctf0:amd64 (2.44-3ubuntu1) ...
95s Setting up libpython3.13:amd64 (3.13.2-2) ...
95s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
95s Setting up libdebuginfod1t64:amd64 (0.192-4) ...
95s Setting up linux-headers-virtual (6.14.0-10.10) ...
95s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ...
95s Setting up python3.13 (3.13.2-2) ...
96s Setting up htop (3.4.0-2) ...
96s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ...
98s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic
98s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic
98s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic
98s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic
98s Setting up libfwupd3:amd64 (2.0.6-4) ...
98s Setting up python3 (3.13.2-2) ...
98s Setting up python3-markupsafe (2.1.5-1build4) ...
98s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ...
101s Setting up libnl-route-3-200:amd64 (3.7.0-1) ...
101s Setting up hwdata (0.393-3) ...
101s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
101s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ...
101s Setting up linux-perf (6.14.0-10.10) ...
101s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ...
101s Setting up python3-gi (3.50.0-4build1) ...
101s Setting up pciutils (1:3.13.0-2) ...
101s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ...
101s Setting up curl (8.12.1-3ubuntu1) ...
101s Setting up linux-image-virtual (6.14.0-10.10) ...
101s Setting up linux-tools-common (6.14.0-10.10) ...
101s Setting up fwupd (2.0.6-4) ...
101s fwupd-refresh.service is a disabled or a static unit not running, not starting it.
101s fwupd.service is a disabled or a static unit not running, not starting it.
102s Setting up python3-systemd (235-1build6) ...
102s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ...
102s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ...
102s Setting up linux-image-generic (6.14.0-10.10) ...
102s Setting up python3-dbus (1.3.2-5build5) ...
102s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ...
102s Setting up linux-generic (6.14.0-10.10) ...
102s Setting up python3-apt (2.9.9build1) ...
102s Setting up python3-yaml (6.0.2-1build2) ...
102s Setting up python3-lazr.uri (1.0.6-6) ...
102s Setting up binutils (2.44-3ubuntu1) ...
102s Setting up cloud-init-base (25.1-0ubuntu3) ...
104s Setting up linux-virtual (6.14.0-10.10) ...
104s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ...
104s Setting up cloud-init (25.1-0ubuntu3) ...
104s Processing triggers for systemd (257.3-1ubuntu3) ...
104s Processing triggers for man-db (2.13.0-1) ...
106s Processing triggers for dbus (1.16.2-1ubuntu1) ...
106s Processing triggers for libc-bin (2.41-1ubuntu1) ...
106s Processing triggers for initramfs-tools (0.146ubuntu1) ...
106s update-initramfs: Generating /boot/initrd.img-6.12.0-16-generic
106s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
117s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ...
117s /etc/kernel/postinst.d/initramfs-tools:
117s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic
117s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
129s /etc/kernel/postinst.d/zz-update-grub:
129s Sourcing file `/etc/default/grub'
129s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
129s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
129s Generating grub configuration file ...
129s Found linux image: /boot/vmlinuz-6.14.0-10-generic
129s Found initrd image: /boot/initrd.img-6.14.0-10-generic
130s Found linux image: /boot/vmlinuz-6.12.0-16-generic
130s Found initrd image: /boot/initrd.img-6.12.0-16-generic
130s Found linux image: /boot/vmlinuz-6.11.0-8-generic
130s Found initrd image: /boot/initrd.img-6.11.0-8-generic
130s Warning: os-prober will not be executed to detect other bootable partitions.
130s Systems on them will not be added to the GRUB boot configuration.
130s Check GRUB_DISABLE_OS_PROBER documentation entry.
130s Adding boot menu entry for UEFI Firmware Settings ...
130s done
130s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref
130s + /usr/lib/apt/apt-helper analyze-pattern ?true
130s + uname -r
130s + sed s/\./\\./g
130s + running_kernel_pattern=^linux-.*6\.12\.0-16-generic.*
130s + apt list ?obsolete
130s + tail -n+2
130s + cut -d/ -f1
130s + grep -v ^linux-.*6\.12\.0-16-generic.*
132s + obsolete_pkgs=linux-headers-6.11.0-8-generic
132s linux-headers-6.11.0-8
132s linux-headers-6.12.0-16
132s linux-image-6.11.0-8-generic
132s linux-modules-6.11.0-8-generic
132s linux-tools-6.11.0-8-generic
132s linux-tools-6.11.0-8
132s linux-tools-6.12.0-16
132s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-headers-6.12.0-16 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 linux-tools-6.12.0-16
132s Reading package lists...
132s Building dependency tree...
132s Reading state information...
132s Solving dependencies...
133s The following packages will be REMOVED:
133s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib*
133s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
133s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic*
133s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic*
133s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16*
133s linux-tools-6.12.0-16-generic*
133s 0 upgraded, 0 newly installed, 15 to remove and 5 not upgraded.
133s After this operation, 371 MB disk space will be freed.
133s (Reading database ...
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(Reading database ... 148643 files and directories currently installed.)
133s Removing libnl-genl-3-200:amd64 (3.7.0-1) ...
133s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
133s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
133s Removing libpython3.12t64:amd64 (3.12.9-1) ...
133s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ...
133s Removing libnsl2:amd64 (1.3.0-3build3) ...
133s Removing libpython3.12-minimal:amd64 (3.12.9-1) ...
133s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
134s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
136s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ...
137s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ...
139s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ...
139s /etc/kernel/postrm.d/initramfs-tools:
139s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic
139s /etc/kernel/postrm.d/zz-update-grub:
139s Sourcing file `/etc/default/grub'
139s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
139s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
139s Generating grub configuration file ...
140s Found linux image: /boot/vmlinuz-6.14.0-10-generic
140s Found initrd image: /boot/initrd.img-6.14.0-10-generic
140s Found linux image: /boot/vmlinuz-6.12.0-16-generic
140s Found initrd image: /boot/initrd.img-6.12.0-16-generic
140s Warning: os-prober will not be executed to detect other bootable partitions.
140s Systems on them will not be added to the GRUB boot configuration.
140s Check GRUB_DISABLE_OS_PROBER documentation entry.
140s Adding boot menu entry for UEFI Firmware Settings ...
140s done
140s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
140s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ...
140s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ...
140s Processing triggers for libc-bin (2.41-1ubuntu1) ...
140s (Reading database ...
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(Reading database ... 84830 files and directories currently installed.)
140s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ...
141s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ...
141s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
141s + grep -q trusty /etc/lsb-release
141s + [ ! -d /usr/share/doc/unattended-upgrades ]
141s + [ ! -d /usr/share/doc/lxd ]
141s + [ ! -d /usr/share/doc/lxd-client ]
141s + [ ! -d /usr/share/doc/snapd ]
141s + type iptables
141s + cat
141s + chmod 755 /etc/rc.local
141s + . /etc/rc.local
141s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu
141s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP
141s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP
141s + uname -m
141s + [ x86_64 = ppc64le ]
141s + [ -d /run/systemd/system ]
141s + systemd-detect-virt --quiet --vm
141s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/
141s + cat
141s + grep -q lz4 /etc/initramfs-tools/initramfs.conf
141s + echo COMPRESS=lz4
141s autopkgtest [22:25:01]: upgrading testbed (apt dist-upgrade and autopurge)
141s Reading package lists...
141s Building dependency tree...
141s Reading state information...
142s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
142s Starting 2 pkgProblemResolver with broken count: 0
142s Done
142s Entering ResolveByKeep
142s
143s Calculating upgrade...
143s The following packages will be upgraded:
143s libc-bin libc-dev-bin libc6 libc6-dev locales
143s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
143s Need to get 10.5 MB of archives.
143s After this operation, 1024 B of additional disk space will be used.
143s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB]
143s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB]
143s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB]
143s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB]
143s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB]
143s Preconfiguring packages ...
143s Fetched 10.5 MB in 0s (35.5 MB/s)
144s (Reading database ...
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(Reading database ... 84827 files and directories currently installed.)
144s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ...
144s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
144s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ...
144s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
144s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ...
144s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
144s Setting up libc6:amd64 (2.41-1ubuntu2) ...
144s (Reading database ...
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(Reading database ... 84827 files and directories currently installed.)
144s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ...
144s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
144s Setting up libc-bin (2.41-1ubuntu2) ...
144s (Reading database ...
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(Reading database ... 84827 files and directories currently installed.)
144s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
144s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
145s Setting up locales (2.41-1ubuntu2) ...
145s Generating locales (this might take a while)...
147s en_US.UTF-8... done
147s Generation complete.
147s Setting up libc-dev-bin (2.41-1ubuntu2) ...
147s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ...
147s Processing triggers for man-db (2.13.0-1) ...
148s Processing triggers for systemd (257.3-1ubuntu3) ...
149s Reading package lists...
149s Building dependency tree...
149s Reading state information...
149s Starting pkgProblemResolver with broken count: 0
149s Starting 2 pkgProblemResolver with broken count: 0
149s Done
149s Solving dependencies...
150s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
150s autopkgtest [22:25:10]: rebooting testbed after setup commands that affected boot
153s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
165s autopkgtest [22:25:25]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025
166s autopkgtest [22:25:26]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-qtl
167s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-qtl 1.70-1 (dsc) [2088 B]
167s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-qtl 1.70-1 (tar) [4373 kB]
167s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-qtl 1.70-1 (diff) [7308 B]
168s gpgv: Signature made Fri Sep 6 01:43:46 2024 UTC
168s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502
168s gpgv: issuer "plessy@debian.org"
168s gpgv: Can't check signature: No public key
168s dpkg-source: warning: cannot verify inline signature for ./r-cran-qtl_1.70-1.dsc: no acceptable signature found
168s autopkgtest [22:25:28]: testing package r-cran-qtl version 1.70-1
168s autopkgtest [22:25:28]: build not needed
169s autopkgtest [22:25:29]: test run-unit-test: preparing testbed
169s Reading package lists...
170s Building dependency tree...
170s Reading state information...
170s Starting pkgProblemResolver with broken count: 0
170s Starting 2 pkgProblemResolver with broken count: 0
170s Done
171s The following NEW packages will be installed:
171s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3
171s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libgfortran5 libgomp1
171s libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8
171s liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
171s libpaper-utils libpaper2 libpixman-1-0 libruby libruby3.3 libsharpyuv0
171s libsm6 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 libwebp7
171s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 r-base-core
171s r-cran-brio r-cran-callr r-cran-cli r-cran-crayon r-cran-desc r-cran-diffobj
171s r-cran-digest r-cran-evaluate r-cran-fs r-cran-glue r-cran-jsonlite
171s r-cran-lifecycle r-cran-magrittr r-cran-pkgbuild r-cran-pkgload
171s r-cran-praise r-cran-processx r-cran-ps r-cran-qtl r-cran-r6 r-cran-rlang
171s r-cran-rprojroot r-cran-testthat r-cran-waldo r-cran-withr rake ruby
171s ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert
171s ruby-rubygems ruby-sdbm ruby-test-unit ruby-webrick ruby-xmlrpc ruby3.3
171s rubygems-integration unzip x11-common xdg-utils zip
171s 0 upgraded, 84 newly installed, 0 to remove and 0 not upgraded.
171s Need to get 63.9 MB of archives.
171s After this operation, 147 MB of additional disk space will be used.
171s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
171s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
171s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB]
171s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB]
171s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB]
171s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB]
171s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB]
171s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB]
171s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B]
171s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB]
171s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB]
171s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB]
171s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB]
171s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB]
171s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB]
171s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB]
171s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB]
171s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
171s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB]
171s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB]
171s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
171s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB]
171s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB]
171s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB]
171s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB]
171s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB]
171s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB]
171s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB]
171s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB]
171s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB]
171s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 rubygems-integration all 1.19 [5550 B]
171s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 ruby3.3 amd64 3.3.6-1.1ubuntu1 [49.2 kB]
171s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 ruby-rubygems all 3.6.3-1 [332 kB]
171s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 ruby amd64 1:3.3~ubuntu3 [3618 B]
171s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 rake all 13.2.1-1 [45.8 kB]
171s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 ruby-did-you-mean all 1.6.3-2 [14.8 kB]
171s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 ruby-minitest all 5.25.4-2ubuntu1 [48.9 kB]
171s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 ruby-net-telnet all 0.2.0-1 [13.3 kB]
171s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 ruby-power-assert all 2.0.3-1 [12.0 kB]
171s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 ruby-test-unit all 3.6.2-1 [67.0 kB]
171s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 ruby-webrick all 1.8.1-1ubuntu1 [52.6 kB]
171s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 ruby-xmlrpc all 0.3.3-2 [24.8 kB]
171s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 ruby-sdbm amd64 1.0.0-5build5 [16.1 kB]
171s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libruby3.3 amd64 3.3.6-1.1ubuntu1 [6115 kB]
171s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libruby amd64 1:3.3~ubuntu3 [5036 B]
171s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB]
171s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB]
171s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB]
171s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB]
171s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB]
171s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB]
171s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB]
171s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B]
171s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB]
171s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB]
171s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB]
171s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB]
171s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
171s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB]
171s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB]
171s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB]
171s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB]
171s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB]
171s Get:64 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB]
171s Get:65 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB]
171s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB]
171s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB]
171s Get:68 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB]
171s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB]
171s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB]
171s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB]
171s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB]
171s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB]
171s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB]
171s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
171s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
171s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.6-1 [213 kB]
171s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-2 [125 kB]
171s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
171s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB]
171s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB]
171s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-qtl amd64 1.70-1 [5604 kB]
172s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-2 [150 kB]
172s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB]
172s Preconfiguring packages ...
172s Fetched 63.9 MB in 1s (84.1 MB/s)
172s Selecting previously unselected package fonts-dejavu-mono.
172s (Reading database ...
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(Reading database ... 84827 files and directories currently installed.)
172s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ...
172s Unpacking fonts-dejavu-mono (2.37-8) ...
172s Selecting previously unselected package fonts-dejavu-core.
172s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ...
172s Unpacking fonts-dejavu-core (2.37-8) ...
172s Selecting previously unselected package fontconfig-config.
172s Preparing to unpack .../02-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ...
173s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
173s Selecting previously unselected package libfontconfig1:amd64.
173s Preparing to unpack .../03-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ...
173s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ...
173s Selecting previously unselected package fontconfig.
173s Preparing to unpack .../04-fontconfig_2.15.0-2ubuntu1_amd64.deb ...
173s Unpacking fontconfig (2.15.0-2ubuntu1) ...
173s Selecting previously unselected package libblas3:amd64.
173s Preparing to unpack .../05-libblas3_3.12.1-2_amd64.deb ...
173s Unpacking libblas3:amd64 (3.12.1-2) ...
173s Selecting previously unselected package libpixman-1-0:amd64.
173s Preparing to unpack .../06-libpixman-1-0_0.44.0-3_amd64.deb ...
173s Unpacking libpixman-1-0:amd64 (0.44.0-3) ...
173s Selecting previously unselected package libxcb-render0:amd64.
173s Preparing to unpack .../07-libxcb-render0_1.17.0-2_amd64.deb ...
173s Unpacking libxcb-render0:amd64 (1.17.0-2) ...
173s Selecting previously unselected package libxcb-shm0:amd64.
173s Preparing to unpack .../08-libxcb-shm0_1.17.0-2_amd64.deb ...
173s Unpacking libxcb-shm0:amd64 (1.17.0-2) ...
173s Selecting previously unselected package libxrender1:amd64.
173s Preparing to unpack .../09-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ...
173s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ...
173s Selecting previously unselected package libcairo2:amd64.
173s Preparing to unpack .../10-libcairo2_1.18.2-2_amd64.deb ...
173s Unpacking libcairo2:amd64 (1.18.2-2) ...
173s Selecting previously unselected package libdatrie1:amd64.
173s Preparing to unpack .../11-libdatrie1_0.2.13-3build1_amd64.deb ...
173s Unpacking libdatrie1:amd64 (0.2.13-3build1) ...
173s Selecting previously unselected package libdeflate0:amd64.
173s Preparing to unpack .../12-libdeflate0_1.23-1_amd64.deb ...
173s Unpacking libdeflate0:amd64 (1.23-1) ...
173s Selecting previously unselected package libgfortran5:amd64.
173s Preparing to unpack .../13-libgfortran5_15-20250222-0ubuntu1_amd64.deb ...
173s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ...
173s Selecting previously unselected package libgomp1:amd64.
173s Preparing to unpack .../14-libgomp1_15-20250222-0ubuntu1_amd64.deb ...
173s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ...
173s Selecting previously unselected package libgraphite2-3:amd64.
173s Preparing to unpack .../15-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ...
173s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ...
173s Selecting previously unselected package libharfbuzz0b:amd64.
173s Preparing to unpack .../16-libharfbuzz0b_10.2.0-1_amd64.deb ...
173s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ...
173s Selecting previously unselected package x11-common.
173s Preparing to unpack .../17-x11-common_1%3a7.7+23ubuntu3_all.deb ...
173s Unpacking x11-common (1:7.7+23ubuntu3) ...
173s Selecting previously unselected package libice6:amd64.
173s Preparing to unpack .../18-libice6_2%3a1.1.1-1_amd64.deb ...
173s Unpacking libice6:amd64 (2:1.1.1-1) ...
173s Selecting previously unselected package libjpeg-turbo8:amd64.
173s Preparing to unpack .../19-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ...
173s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ...
173s Selecting previously unselected package libjpeg8:amd64.
173s Preparing to unpack .../20-libjpeg8_8c-2ubuntu11_amd64.deb ...
173s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ...
173s Selecting previously unselected package liblapack3:amd64.
173s Preparing to unpack .../21-liblapack3_3.12.1-2_amd64.deb ...
173s Unpacking liblapack3:amd64 (3.12.1-2) ...
174s Selecting previously unselected package liblerc4:amd64.
174s Preparing to unpack .../22-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ...
174s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ...
174s Selecting previously unselected package libthai-data.
174s Preparing to unpack .../23-libthai-data_0.1.29-2build1_all.deb ...
174s Unpacking libthai-data (0.1.29-2build1) ...
174s Selecting previously unselected package libthai0:amd64.
174s Preparing to unpack .../24-libthai0_0.1.29-2build1_amd64.deb ...
174s Unpacking libthai0:amd64 (0.1.29-2build1) ...
174s Selecting previously unselected package libpango-1.0-0:amd64.
174s Preparing to unpack .../25-libpango-1.0-0_1.56.2-1_amd64.deb ...
174s Unpacking libpango-1.0-0:amd64 (1.56.2-1) ...
174s Selecting previously unselected package libpangoft2-1.0-0:amd64.
174s Preparing to unpack .../26-libpangoft2-1.0-0_1.56.2-1_amd64.deb ...
174s Unpacking libpangoft2-1.0-0:amd64 (1.56.2-1) ...
174s Selecting previously unselected package libpangocairo-1.0-0:amd64.
174s Preparing to unpack .../27-libpangocairo-1.0-0_1.56.2-1_amd64.deb ...
174s Unpacking libpangocairo-1.0-0:amd64 (1.56.2-1) ...
174s Selecting previously unselected package libpaper2:amd64.
174s Preparing to unpack .../28-libpaper2_2.2.5-0.3_amd64.deb ...
174s Unpacking libpaper2:amd64 (2.2.5-0.3) ...
174s Selecting previously unselected package libpaper-utils.
174s Preparing to unpack .../29-libpaper-utils_2.2.5-0.3_amd64.deb ...
174s Unpacking libpaper-utils (2.2.5-0.3) ...
174s Selecting previously unselected package rubygems-integration.
174s Preparing to unpack .../30-rubygems-integration_1.19_all.deb ...
174s Unpacking rubygems-integration (1.19) ...
174s Selecting previously unselected package ruby3.3.
174s Preparing to unpack .../31-ruby3.3_3.3.6-1.1ubuntu1_amd64.deb ...
174s Unpacking ruby3.3 (3.3.6-1.1ubuntu1) ...
174s Selecting previously unselected package ruby-rubygems.
174s Preparing to unpack .../32-ruby-rubygems_3.6.3-1_all.deb ...
174s Unpacking ruby-rubygems (3.6.3-1) ...
174s Selecting previously unselected package ruby.
174s Preparing to unpack .../33-ruby_1%3a3.3~ubuntu3_amd64.deb ...
174s Unpacking ruby (1:3.3~ubuntu3) ...
174s Selecting previously unselected package rake.
174s Preparing to unpack .../34-rake_13.2.1-1_all.deb ...
174s Unpacking rake (13.2.1-1) ...
174s Selecting previously unselected package ruby-did-you-mean.
174s Preparing to unpack .../35-ruby-did-you-mean_1.6.3-2_all.deb ...
174s Unpacking ruby-did-you-mean (1.6.3-2) ...
174s Selecting previously unselected package ruby-minitest.
174s Preparing to unpack .../36-ruby-minitest_5.25.4-2ubuntu1_all.deb ...
174s Unpacking ruby-minitest (5.25.4-2ubuntu1) ...
174s Selecting previously unselected package ruby-net-telnet.
174s Preparing to unpack .../37-ruby-net-telnet_0.2.0-1_all.deb ...
174s Unpacking ruby-net-telnet (0.2.0-1) ...
174s Selecting previously unselected package ruby-power-assert.
174s Preparing to unpack .../38-ruby-power-assert_2.0.3-1_all.deb ...
174s Unpacking ruby-power-assert (2.0.3-1) ...
174s Selecting previously unselected package ruby-test-unit.
174s Preparing to unpack .../39-ruby-test-unit_3.6.2-1_all.deb ...
174s Unpacking ruby-test-unit (3.6.2-1) ...
174s Selecting previously unselected package ruby-webrick.
174s Preparing to unpack .../40-ruby-webrick_1.8.1-1ubuntu1_all.deb ...
174s Unpacking ruby-webrick (1.8.1-1ubuntu1) ...
174s Selecting previously unselected package ruby-xmlrpc.
174s Preparing to unpack .../41-ruby-xmlrpc_0.3.3-2_all.deb ...
174s Unpacking ruby-xmlrpc (0.3.3-2) ...
174s Selecting previously unselected package ruby-sdbm:amd64.
174s Preparing to unpack .../42-ruby-sdbm_1.0.0-5build5_amd64.deb ...
174s Unpacking ruby-sdbm:amd64 (1.0.0-5build5) ...
174s Selecting previously unselected package libruby3.3:amd64.
174s Preparing to unpack .../43-libruby3.3_3.3.6-1.1ubuntu1_amd64.deb ...
174s Unpacking libruby3.3:amd64 (3.3.6-1.1ubuntu1) ...
175s Selecting previously unselected package libruby:amd64.
175s Preparing to unpack .../44-libruby_1%3a3.3~ubuntu3_amd64.deb ...
175s Unpacking libruby:amd64 (1:3.3~ubuntu3) ...
175s Selecting previously unselected package libsharpyuv0:amd64.
175s Preparing to unpack .../45-libsharpyuv0_1.5.0-0.1_amd64.deb ...
175s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ...
175s Selecting previously unselected package libsm6:amd64.
175s Preparing to unpack .../46-libsm6_2%3a1.2.4-1_amd64.deb ...
175s Unpacking libsm6:amd64 (2:1.2.4-1) ...
175s Selecting previously unselected package libtcl8.6:amd64.
175s Preparing to unpack .../47-libtcl8.6_8.6.16+dfsg-1_amd64.deb ...
175s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ...
175s Selecting previously unselected package libjbig0:amd64.
175s Preparing to unpack .../48-libjbig0_2.1-6.1ubuntu2_amd64.deb ...
175s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ...
175s Selecting previously unselected package libwebp7:amd64.
175s Preparing to unpack .../49-libwebp7_1.5.0-0.1_amd64.deb ...
175s Unpacking libwebp7:amd64 (1.5.0-0.1) ...
175s Selecting previously unselected package libtiff6:amd64.
175s Preparing to unpack .../50-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ...
175s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ...
175s Selecting previously unselected package libxft2:amd64.
175s Preparing to unpack .../51-libxft2_2.3.6-1build1_amd64.deb ...
175s Unpacking libxft2:amd64 (2.3.6-1build1) ...
175s Selecting previously unselected package libxss1:amd64.
175s Preparing to unpack .../52-libxss1_1%3a1.2.3-1build3_amd64.deb ...
175s Unpacking libxss1:amd64 (1:1.2.3-1build3) ...
175s Selecting previously unselected package libtk8.6:amd64.
175s Preparing to unpack .../53-libtk8.6_8.6.16-1_amd64.deb ...
175s Unpacking libtk8.6:amd64 (8.6.16-1) ...
175s Selecting previously unselected package libxt6t64:amd64.
175s Preparing to unpack .../54-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ...
175s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ...
175s Selecting previously unselected package zip.
175s Preparing to unpack .../55-zip_3.0-14ubuntu2_amd64.deb ...
175s Unpacking zip (3.0-14ubuntu2) ...
175s Selecting previously unselected package unzip.
175s Preparing to unpack .../56-unzip_6.0-28ubuntu6_amd64.deb ...
175s Unpacking unzip (6.0-28ubuntu6) ...
175s Selecting previously unselected package xdg-utils.
175s Preparing to unpack .../57-xdg-utils_1.2.1-2ubuntu1_all.deb ...
175s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
175s Selecting previously unselected package r-base-core.
175s Preparing to unpack .../58-r-base-core_4.4.3-1_amd64.deb ...
175s Unpacking r-base-core (4.4.3-1) ...
176s Selecting previously unselected package r-cran-brio.
176s Preparing to unpack .../59-r-cran-brio_1.1.5-1_amd64.deb ...
176s Unpacking r-cran-brio (1.1.5-1) ...
176s Selecting previously unselected package r-cran-ps.
176s Preparing to unpack .../60-r-cran-ps_1.9.0-1_amd64.deb ...
176s Unpacking r-cran-ps (1.9.0-1) ...
176s Selecting previously unselected package r-cran-r6.
176s Preparing to unpack .../61-r-cran-r6_2.6.1-1_all.deb ...
176s Unpacking r-cran-r6 (2.6.1-1) ...
176s Selecting previously unselected package r-cran-processx.
176s Preparing to unpack .../62-r-cran-processx_3.8.6-1_amd64.deb ...
176s Unpacking r-cran-processx (3.8.6-1) ...
176s Selecting previously unselected package r-cran-callr.
176s Preparing to unpack .../63-r-cran-callr_3.7.6-1_all.deb ...
176s Unpacking r-cran-callr (3.7.6-1) ...
176s Selecting previously unselected package r-cran-cli.
176s Preparing to unpack .../64-r-cran-cli_3.6.4-1_amd64.deb ...
176s Unpacking r-cran-cli (3.6.4-1) ...
176s Selecting previously unselected package r-cran-crayon.
176s Preparing to unpack .../65-r-cran-crayon_1.5.3-1_all.deb ...
176s Unpacking r-cran-crayon (1.5.3-1) ...
176s Selecting previously unselected package r-cran-desc.
176s Preparing to unpack .../66-r-cran-desc_1.4.3-1_all.deb ...
176s Unpacking r-cran-desc (1.4.3-1) ...
176s Selecting previously unselected package r-cran-diffobj.
176s Preparing to unpack .../67-r-cran-diffobj_0.3.5-1_amd64.deb ...
176s Unpacking r-cran-diffobj (0.3.5-1) ...
176s Selecting previously unselected package r-cran-digest.
176s Preparing to unpack .../68-r-cran-digest_0.6.37-1_amd64.deb ...
176s Unpacking r-cran-digest (0.6.37-1) ...
176s Selecting previously unselected package r-cran-evaluate.
176s Preparing to unpack .../69-r-cran-evaluate_1.0.3-1_all.deb ...
176s Unpacking r-cran-evaluate (1.0.3-1) ...
176s Selecting previously unselected package r-cran-fs.
176s Preparing to unpack .../70-r-cran-fs_1.6.5+dfsg-1_amd64.deb ...
176s Unpacking r-cran-fs (1.6.5+dfsg-1) ...
176s Selecting previously unselected package r-cran-glue.
176s Preparing to unpack .../71-r-cran-glue_1.8.0-1_amd64.deb ...
176s Unpacking r-cran-glue (1.8.0-1) ...
176s Selecting previously unselected package r-cran-jsonlite.
176s Preparing to unpack .../72-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ...
176s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ...
176s Selecting previously unselected package r-cran-rlang.
176s Preparing to unpack .../73-r-cran-rlang_1.1.5-1_amd64.deb ...
176s Unpacking r-cran-rlang (1.1.5-1) ...
176s Selecting previously unselected package r-cran-lifecycle.
176s Preparing to unpack .../74-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
176s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
176s Selecting previously unselected package r-cran-magrittr.
176s Preparing to unpack .../75-r-cran-magrittr_2.0.3-1_amd64.deb ...
176s Unpacking r-cran-magrittr (2.0.3-1) ...
177s Selecting previously unselected package r-cran-pkgbuild.
177s Preparing to unpack .../76-r-cran-pkgbuild_1.4.6-1_all.deb ...
177s Unpacking r-cran-pkgbuild (1.4.6-1) ...
177s Selecting previously unselected package r-cran-rprojroot.
177s Preparing to unpack .../77-r-cran-rprojroot_2.0.4-2_all.deb ...
177s Unpacking r-cran-rprojroot (2.0.4-2) ...
177s Selecting previously unselected package r-cran-withr.
177s Preparing to unpack .../78-r-cran-withr_3.0.2+dfsg-1_all.deb ...
177s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
177s Selecting previously unselected package r-cran-pkgload.
177s Preparing to unpack .../79-r-cran-pkgload_1.4.0-1_all.deb ...
177s Unpacking r-cran-pkgload (1.4.0-1) ...
177s Selecting previously unselected package r-cran-praise.
177s Preparing to unpack .../80-r-cran-praise_1.0.0-4build1_all.deb ...
177s Unpacking r-cran-praise (1.0.0-4build1) ...
177s Selecting previously unselected package r-cran-qtl.
177s Preparing to unpack .../81-r-cran-qtl_1.70-1_amd64.deb ...
177s Unpacking r-cran-qtl (1.70-1) ...
177s Selecting previously unselected package r-cran-waldo.
177s Preparing to unpack .../82-r-cran-waldo_0.6.1-2_all.deb ...
177s Unpacking r-cran-waldo (0.6.1-2) ...
177s Selecting previously unselected package r-cran-testthat.
177s Preparing to unpack .../83-r-cran-testthat_3.2.3-1_amd64.deb ...
177s Unpacking r-cran-testthat (3.2.3-1) ...
177s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ...
177s Setting up libpixman-1-0:amd64 (0.44.0-3) ...
177s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ...
177s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ...
177s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ...
177s Setting up libdatrie1:amd64 (0.2.13-3build1) ...
177s Setting up ruby-power-assert (2.0.3-1) ...
177s Setting up libxcb-render0:amd64 (1.17.0-2) ...
177s Setting up unzip (6.0-28ubuntu6) ...
177s Setting up x11-common (1:7.7+23ubuntu3) ...
177s Setting up libdeflate0:amd64 (1.23-1) ...
177s Setting up rubygems-integration (1.19) ...
177s Setting up libxcb-shm0:amd64 (1.17.0-2) ...
177s Setting up libgomp1:amd64 (15-20250222-0ubuntu1) ...
177s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ...
177s Setting up ruby-minitest (5.25.4-2ubuntu1) ...
177s Setting up zip (3.0-14ubuntu2) ...
177s Setting up libblas3:amd64 (3.12.1-2) ...
177s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
177s Setting up ruby-test-unit (3.6.2-1) ...
177s Setting up ruby-net-telnet (0.2.0-1) ...
177s Setting up fonts-dejavu-mono (2.37-8) ...
177s Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ...
177s Setting up fonts-dejavu-core (2.37-8) ...
177s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ...
177s Setting up libgfortran5:amd64 (15-20250222-0ubuntu1) ...
177s Setting up libwebp7:amd64 (1.5.0-0.1) ...
177s Setting up ruby-webrick (1.8.1-1ubuntu1) ...
177s Setting up libharfbuzz0b:amd64 (10.2.0-1) ...
177s Setting up libthai-data (0.1.29-2build1) ...
177s Setting up libxss1:amd64 (1:1.2.3-1build3) ...
177s Setting up libpaper2:amd64 (2.2.5-0.3) ...
178s Setting up ruby-did-you-mean (1.6.3-2) ...
178s Setting up ruby-xmlrpc (0.3.3-2) ...
178s Setting up xdg-utils (1.2.1-2ubuntu1) ...
178s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
178s Setting up libjpeg8:amd64 (8c-2ubuntu11) ...
178s Setting up libice6:amd64 (2:1.1.1-1) ...
178s Setting up liblapack3:amd64 (3.12.1-2) ...
178s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
178s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
178s Setting up libpaper-utils (2.2.5-0.3) ...
178s Setting up libthai0:amd64 (0.1.29-2build1) ...
178s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ...
178s Setting up libfontconfig1:amd64 (2.15.0-2ubuntu1) ...
178s Setting up libsm6:amd64 (2:1.2.4-1) ...
178s Setting up fontconfig (2.15.0-2ubuntu1) ...
180s Regenerating fonts cache... done.
180s Setting up libxft2:amd64 (2.3.6-1build1) ...
180s Setting up libtk8.6:amd64 (8.6.16-1) ...
180s Setting up libpango-1.0-0:amd64 (1.56.2-1) ...
180s Setting up libcairo2:amd64 (1.18.2-2) ...
180s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ...
180s Setting up libpangoft2-1.0-0:amd64 (1.56.2-1) ...
180s Setting up libpangocairo-1.0-0:amd64 (1.56.2-1) ...
180s Setting up r-base-core (4.4.3-1) ...
180s Creating config file /etc/R/Renviron with new version
180s Setting up r-cran-crayon (1.5.3-1) ...
180s Setting up r-cran-ps (1.9.0-1) ...
180s Setting up r-cran-r6 (2.6.1-1) ...
180s Setting up r-cran-magrittr (2.0.3-1) ...
180s Setting up r-cran-fs (1.6.5+dfsg-1) ...
180s Setting up r-cran-brio (1.1.5-1) ...
180s Setting up r-cran-diffobj (0.3.5-1) ...
180s Setting up r-cran-rlang (1.1.5-1) ...
180s Setting up r-cran-withr (3.0.2+dfsg-1) ...
180s Setting up r-cran-processx (3.8.6-1) ...
180s Setting up r-cran-praise (1.0.0-4build1) ...
180s Setting up r-cran-digest (0.6.37-1) ...
180s Setting up r-cran-evaluate (1.0.3-1) ...
180s Setting up r-cran-glue (1.8.0-1) ...
180s Setting up r-cran-cli (3.6.4-1) ...
180s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
180s Setting up r-cran-rprojroot (2.0.4-2) ...
180s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
180s Setting up r-cran-waldo (0.6.1-2) ...
180s Setting up r-cran-callr (3.7.6-1) ...
180s Setting up r-cran-desc (1.4.3-1) ...
180s Setting up r-cran-pkgbuild (1.4.6-1) ...
180s Setting up r-cran-pkgload (1.4.0-1) ...
180s Setting up r-cran-testthat (3.2.3-1) ...
180s Setting up libruby:amd64 (1:3.3~ubuntu3) ...
180s Setting up ruby-rubygems (3.6.3-1) ...
180s Setting up ruby (1:3.3~ubuntu3) ...
180s Setting up rake (13.2.1-1) ...
180s Setting up ruby-sdbm:amd64 (1.0.0-5build5) ...
180s Setting up r-cran-qtl (1.70-1) ...
180s Setting up libruby3.3:amd64 (3.3.6-1.1ubuntu1) ...
180s Setting up ruby3.3 (3.3.6-1.1ubuntu1) ...
180s Processing triggers for install-info (7.1.1-1) ...
180s Processing triggers for libc-bin (2.41-1ubuntu2) ...
180s Processing triggers for man-db (2.13.0-1) ...
182s autopkgtest [22:25:42]: test run-unit-test: [-----------------------
183s Warning message:
183s In fixXgeno.f2(cross, alleles) :
183s --Assuming that all individuals are female.
183s
183s Warning message:
183s In fixXgeno.f2(cross, alleles) :
183s --Assuming that all individuals are female.
183s
183s Warning message:
183s In fixXgeno.f2(cross, alleles) :
183s --Assuming that all individuals are female.
183s
183s Warning message:
183s In fixXgeno.f2(cross, alleles) :
183s --Assuming that all individuals are female.
183s
183s Crosses are identical.
183s Test test_io.R passed
185s Crosses are identical.
185s Test test_mapqtl_io.R passed
185s Warning message:
185s In checkcovar(cross, pheno.col, addcovar, intcovar, perm.strata, :
185s Dropping 4 individuals with missing phenotypes.
185s
185s Warning message:
185s In mqmaugment(listeria, minprob = 1, verbose = TRUE) :
185s MQM not yet available for the X chromosome; omitting chr X
186s Warning message:
186s In omit_x_chr(cross) : Omitting X chromosome (X)
187s Warning message:
187s In omit_x_chr(cross) : Omitting X chromosome (X)
187s Test test_qtl.R passed
191s Test test_scanonevar.R passed
192s Crosses are identical.
192s Test test_tidyIO.R passed
193s Warning message:
193s In mqmaugment(cross, ...) :
193s MQM not yet available for the X chromosome; omitting chr X
193s Test testaugmentation.R passed
193s Loading required package: qtl
209s Test testthat.R passed
209s autopkgtest [22:26:09]: test run-unit-test: -----------------------]
209s autopkgtest [22:26:09]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - -
209s run-unit-test PASS
209s autopkgtest [22:26:09]: test pkg-r-autopkgtest: preparing testbed
210s Reading package lists...
210s Building dependency tree...
210s Reading state information...
210s Starting pkgProblemResolver with broken count: 0
210s Starting 2 pkgProblemResolver with broken count: 0
210s Done
211s The following NEW packages will be installed:
211s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu
211s dctrl-tools g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc
211s gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14
211s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8
211s libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-14-dev
211s libgfortran-14-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev
211s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3
211s libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
211s libpkgconf3 libpng-dev libquadmath0 libreadline-dev libstdc++-14-dev
211s libtirpc-dev libtsan2 libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin
211s r-base-dev zlib1g-dev
211s 0 upgraded, 55 newly installed, 0 to remove and 0 not upgraded.
211s Need to get 103 MB of archives.
211s After this operation, 363 MB of additional disk space will be used.
211s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB]
211s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB]
211s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB]
211s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B]
211s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B]
211s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB]
211s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB]
211s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB]
211s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB]
211s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB]
211s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB]
212s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB]
212s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB]
212s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB]
212s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB]
212s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB]
212s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB]
212s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B]
212s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B]
212s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB]
212s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB]
212s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB]
212s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B]
212s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B]
212s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
212s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB]
212s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB]
212s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB]
212s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB]
212s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B]
212s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B]
212s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB]
212s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB]
212s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB]
212s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB]
212s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB]
212s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB]
212s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B]
212s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B]
212s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB]
212s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB]
212s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB]
212s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB]
212s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B]
212s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB]
212s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB]
212s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB]
212s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB]
212s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB]
212s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB]
212s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB]
212s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB]
212s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB]
212s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B]
212s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
213s Fetched 103 MB in 1s (74.5 MB/s)
213s Selecting previously unselected package libisl23:amd64.
213s (Reading database ...
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(Reading database ... 93465 files and directories currently installed.)
213s Preparing to unpack .../00-libisl23_0.27-1_amd64.deb ...
213s Unpacking libisl23:amd64 (0.27-1) ...
213s Selecting previously unselected package libmpc3:amd64.
213s Preparing to unpack .../01-libmpc3_1.3.1-1build2_amd64.deb ...
213s Unpacking libmpc3:amd64 (1.3.1-1build2) ...
213s Selecting previously unselected package cpp-14-x86-64-linux-gnu.
213s Preparing to unpack .../02-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ...
213s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
213s Selecting previously unselected package cpp-14.
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213s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
213s Selecting previously unselected package cpp-x86-64-linux-gnu.
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213s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
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213s Unpacking cpp (4:14.2.0-1ubuntu1) ...
213s Selecting previously unselected package libcc1-0:amd64.
213s Preparing to unpack .../06-libcc1-0_15-20250222-0ubuntu1_amd64.deb ...
213s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ...
213s Selecting previously unselected package libitm1:amd64.
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213s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ...
213s Selecting previously unselected package libasan8:amd64.
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213s Selecting previously unselected package liblsan0:amd64.
213s Preparing to unpack .../09-liblsan0_15-20250222-0ubuntu1_amd64.deb ...
213s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ...
213s Selecting previously unselected package libtsan2:amd64.
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213s Selecting previously unselected package libubsan1:amd64.
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214s Selecting previously unselected package libhwasan0:amd64.
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214s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ...
214s Selecting previously unselected package libquadmath0:amd64.
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214s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ...
214s Selecting previously unselected package libgcc-14-dev:amd64.
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214s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ...
214s Selecting previously unselected package gcc-14-x86-64-linux-gnu.
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214s Selecting previously unselected package gcc-14.
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214s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
214s Selecting previously unselected package gcc-x86-64-linux-gnu.
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214s Unpacking gcc (4:14.2.0-1ubuntu1) ...
214s Selecting previously unselected package libstdc++-14-dev:amd64.
214s Preparing to unpack .../19-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ...
214s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ...
214s Selecting previously unselected package g++-14-x86-64-linux-gnu.
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215s Selecting previously unselected package g++-14.
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215s Selecting previously unselected package g++-x86-64-linux-gnu.
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215s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
215s Selecting previously unselected package g++.
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215s Unpacking g++ (4:14.2.0-1ubuntu1) ...
215s Selecting previously unselected package build-essential.
215s Preparing to unpack .../24-build-essential_12.10ubuntu1_amd64.deb ...
215s Unpacking build-essential (12.10ubuntu1) ...
215s Selecting previously unselected package dctrl-tools.
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215s Unpacking dctrl-tools (2.24-3build3) ...
215s Selecting previously unselected package libgfortran-14-dev:amd64.
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215s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ...
215s Selecting previously unselected package gfortran-14-x86-64-linux-gnu.
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215s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
215s Selecting previously unselected package gfortran-14.
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215s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
215s Selecting previously unselected package gfortran-x86-64-linux-gnu.
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215s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
215s Selecting previously unselected package gfortran.
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215s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
215s Selecting previously unselected package icu-devtools.
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215s Unpacking icu-devtools (76.1-1ubuntu2) ...
215s Selecting previously unselected package libblas-dev:amd64.
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215s Unpacking libblas-dev:amd64 (3.12.1-2) ...
215s Selecting previously unselected package libbz2-dev:amd64.
215s Preparing to unpack .../33-libbz2-dev_1.0.8-6_amd64.deb ...
215s Unpacking libbz2-dev:amd64 (1.0.8-6) ...
215s Selecting previously unselected package libdeflate-dev:amd64.
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215s Selecting previously unselected package libicu-dev:amd64.
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215s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ...
216s Selecting previously unselected package libjpeg-turbo8-dev:amd64.
216s Preparing to unpack .../36-libjpeg-turbo8-dev_2.1.5-3ubuntu2_amd64.deb ...
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216s Selecting previously unselected package libjpeg8-dev:amd64.
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216s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ...
216s Selecting previously unselected package libjpeg-dev:amd64.
216s Preparing to unpack .../38-libjpeg-dev_8c-2ubuntu11_amd64.deb ...
216s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ...
216s Selecting previously unselected package liblapack-dev:amd64.
216s Preparing to unpack .../39-liblapack-dev_3.12.1-2_amd64.deb ...
216s Unpacking liblapack-dev:amd64 (3.12.1-2) ...
216s Selecting previously unselected package libncurses-dev:amd64.
216s Preparing to unpack .../40-libncurses-dev_6.5+20250216-2_amd64.deb ...
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216s Selecting previously unselected package libpcre2-16-0:amd64.
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216s Unpacking libpcre2-dev:amd64 (10.45-1) ...
216s Selecting previously unselected package libpkgconf3:amd64.
216s Preparing to unpack .../45-libpkgconf3_1.8.1-4_amd64.deb ...
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216s Selecting previously unselected package zlib1g-dev:amd64.
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216s Selecting previously unselected package libpng-dev:amd64.
216s Preparing to unpack .../47-libpng-dev_1.6.47-1_amd64.deb ...
216s Unpacking libpng-dev:amd64 (1.6.47-1) ...
216s Selecting previously unselected package libreadline-dev:amd64.
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216s Unpacking libreadline-dev:amd64 (8.2-6) ...
216s Selecting previously unselected package liblzma-dev:amd64.
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216s Unpacking liblzma-dev:amd64 (5.6.4-1) ...
216s Selecting previously unselected package pkgconf-bin.
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216s Selecting previously unselected package pkgconf:amd64.
216s Preparing to unpack .../51-pkgconf_1.8.1-4_amd64.deb ...
216s Unpacking pkgconf:amd64 (1.8.1-4) ...
216s Selecting previously unselected package libtirpc-dev:amd64.
217s Preparing to unpack .../52-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ...
217s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ...
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217s Preparing to unpack .../54-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
217s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
217s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ...
217s Setting up libncurses-dev:amd64 (6.5+20250216-2) ...
217s Setting up libreadline-dev:amd64 (8.2-6) ...
217s Setting up libpcre2-16-0:amd64 (10.45-1) ...
217s Setting up libpcre2-32-0:amd64 (10.45-1) ...
217s Setting up libtirpc-dev:amd64 (1.3.4+ds-1.3) ...
217s Setting up libpkgconf3:amd64 (1.8.1-4) ...
217s Setting up libquadmath0:amd64 (15-20250222-0ubuntu1) ...
217s Setting up libmpc3:amd64 (1.3.1-1build2) ...
217s Setting up icu-devtools (76.1-1ubuntu2) ...
217s Setting up pkgconf-bin (1.8.1-4) ...
217s Setting up liblzma-dev:amd64 (5.6.4-1) ...
217s Setting up libubsan1:amd64 (15-20250222-0ubuntu1) ...
217s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
217s Setting up libpcre2-posix3:amd64 (10.45-1) ...
217s Setting up libhwasan0:amd64 (15-20250222-0ubuntu1) ...
217s Setting up libasan8:amd64 (15-20250222-0ubuntu1) ...
217s Setting up libtsan2:amd64 (15-20250222-0ubuntu1) ...
217s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ...
217s Setting up libisl23:amd64 (0.27-1) ...
217s Setting up libdeflate-dev:amd64 (1.23-1) ...
217s Setting up libicu-dev:amd64 (76.1-1ubuntu2) ...
217s Setting up libcc1-0:amd64 (15-20250222-0ubuntu1) ...
217s Setting up liblsan0:amd64 (15-20250222-0ubuntu1) ...
217s Setting up libblas-dev:amd64 (3.12.1-2) ...
217s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
217s Setting up dctrl-tools (2.24-3build3) ...
217s Setting up libitm1:amd64 (15-20250222-0ubuntu1) ...
217s Setting up libbz2-dev:amd64 (1.0.8-6) ...
217s Setting up libpcre2-dev:amd64 (10.45-1) ...
217s Setting up libpng-dev:amd64 (1.6.47-1) ...
217s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ...
217s Setting up pkgconf:amd64 (1.8.1-4) ...
217s Setting up liblapack-dev:amd64 (3.12.1-2) ...
217s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
217s Setting up cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
217s Setting up cpp-14 (14.2.0-17ubuntu3) ...
217s Setting up libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ...
217s Setting up libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ...
217s Setting up cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
217s Setting up libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ...
217s Setting up cpp (4:14.2.0-1ubuntu1) ...
217s Setting up gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
217s Setting up gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
217s Setting up gcc-14 (14.2.0-17ubuntu3) ...
217s Setting up gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
217s Setting up g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ...
217s Setting up g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
217s Setting up g++-14 (14.2.0-17ubuntu3) ...
217s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
217s Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
217s Setting up gcc (4:14.2.0-1ubuntu1) ...
217s Setting up g++ (4:14.2.0-1ubuntu1) ...
217s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
217s Setting up build-essential (12.10ubuntu1) ...
217s Setting up gfortran (4:14.2.0-1ubuntu1) ...
217s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
217s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
217s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
217s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
217s Setting up r-base-dev (4.4.3-1) ...
217s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
217s Processing triggers for libc-bin (2.41-1ubuntu2) ...
217s Processing triggers for man-db (2.13.0-1) ...
218s Processing triggers for install-info (7.1.1-1) ...
218s autopkgtest [22:26:18]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
218s autopkgtest [22:26:18]: test pkg-r-autopkgtest: [-----------------------
219s Test: Try to load the R library qtl
219s
219s R version 4.4.3 (2025-02-28) -- "Trophy Case"
219s Copyright (C) 2025 The R Foundation for Statistical Computing
219s Platform: x86_64-pc-linux-gnu
219s
219s R is free software and comes with ABSOLUTELY NO WARRANTY.
219s You are welcome to redistribute it under certain conditions.
219s Type 'license()' or 'licence()' for distribution details.
219s
219s R is a collaborative project with many contributors.
219s Type 'contributors()' for more information and
219s 'citation()' on how to cite R or R packages in publications.
219s
219s Type 'demo()' for some demos, 'help()' for on-line help, or
219s 'help.start()' for an HTML browser interface to help.
219s Type 'q()' to quit R.
219s
219s > library('qtl')
219s >
219s >
219s Other tests are currently unsupported!
219s They will be progressively added.
219s autopkgtest [22:26:19]: test pkg-r-autopkgtest: -----------------------]
219s autopkgtest [22:26:19]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - -
219s pkg-r-autopkgtest PASS
219s autopkgtest [22:26:19]: @@@@@@@@@@@@@@@@@@@@ summary
219s run-unit-test PASS
219s pkg-r-autopkgtest PASS
236s nova [W] Skipping flock for amd64
236s Creating nova instance adt-plucky-amd64-r-cran-qtl-20250315-222240-juju-7f2275-prod-proposed-migration-environment-15-4510c63c-4efe-4d6c-a5f3-5d4edc022ead from image adt/ubuntu-plucky-amd64-server-20250306.img (UUID 60d877d7-b74c-4f24-920d-f4570db0a338)...
236s nova [W] Timed out waiting for 12645eb6-921d-499a-baa5-bd9b90b91b72 to get deleted.