0s autopkgtest [22:19:02]: starting date and time: 2025-03-15 22:19:02+0000 0s autopkgtest [22:19:02]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [22:19:02]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._wp_0gl9/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-network --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-21.secgroup --name adt-plucky-amd64-r-cran-network-20250315-221901-juju-7f2275-prod-proposed-migration-environment-2-4dd37b52-c52a-4bf3-ae54-77aab5598d32 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 48s autopkgtest [22:19:50]: testbed dpkg architecture: amd64 48s autopkgtest [22:19:50]: testbed apt version: 2.9.31ubuntu1 49s autopkgtest [22:19:51]: @@@@@@@@@@@@@@@@@@@@ test bed setup 49s autopkgtest [22:19:51]: testbed release detected to be: None 50s autopkgtest [22:19:52]: updating testbed package index (apt update) 50s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 51s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 51s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 51s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 51s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 51s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 51s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 51s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 51s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 51s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 51s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 51s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 51s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 51s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 51s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 51s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 51s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 52s Fetched 1265 kB in 1s (1355 kB/s) 52s Reading package lists... 53s Reading package lists... 53s Building dependency tree... 53s Reading state information... 54s Calculating upgrade... 54s Calculating upgrade... 54s The following package was automatically installed and is no longer required: 54s libnl-genl-3-200 54s Use 'sudo apt autoremove' to remove it. 54s The following NEW packages will be installed: 54s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 54s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 54s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 54s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 54s The following packages will be upgraded: 54s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 54s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base 54s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools 54s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0 54s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 54s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0 54s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1 54s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64 55s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6 55s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200 55s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib 55s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2 55s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 55s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 55s linux-firmware linux-generic linux-headers-generic linux-headers-virtual 55s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 55s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 55s parted pci.ids pciutils pinentry-curses python-apt-common python3 55s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi 55s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal 55s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13 55s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd 55s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd 55s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail 55s xz-utils 55s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 55s Need to get 829 MB of archives. 55s After this operation, 325 MB of additional disk space will be used. 55s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 55s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 55s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 55s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 55s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 55s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 55s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 55s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 55s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 55s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 55s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 55s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 55s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 55s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 55s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 55s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 56s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 56s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 56s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 56s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 56s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 56s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 56s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 56s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 56s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 56s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 56s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 56s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 56s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 56s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 56s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 56s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 56s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 56s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 56s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 56s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 56s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 56s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 56s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 56s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 56s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 56s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 56s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 56s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 56s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 56s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 56s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 56s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 56s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 56s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 56s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 56s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 56s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 56s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 56s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 56s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 56s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 56s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 56s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 56s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 56s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 56s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 56s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 56s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 56s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 56s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 56s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 56s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 56s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 57s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 57s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 57s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 57s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 57s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 57s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 57s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 57s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 57s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 57s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 57s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 57s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 57s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 57s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 57s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 57s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 57s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 57s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 57s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 57s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 57s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 57s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 57s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 57s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 57s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 57s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 57s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 57s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 57s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 57s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 57s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 57s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 57s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 57s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 57s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 57s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 58s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 58s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 58s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 58s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 98s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 98s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 98s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 98s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 98s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 98s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 98s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 98s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 99s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 100s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 104s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 104s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 104s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 104s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 104s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 104s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 104s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 104s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 104s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 105s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 105s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 105s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 105s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 105s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 105s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 105s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 105s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 105s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 105s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 105s Preconfiguring packages ... 105s Fetched 829 MB in 50s (16.5 MB/s) 106s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109140 files and directories currently installed.) 106s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu1_amd64.deb ... 106s Unpacking libc-dev-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 106s Preparing to unpack .../libc6-dev_2.41-1ubuntu1_amd64.deb ... 106s Unpacking libc6-dev:amd64 (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 106s Preparing to unpack .../locales_2.41-1ubuntu1_all.deb ... 106s Unpacking locales (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 106s Preparing to unpack .../libc6_2.41-1ubuntu1_amd64.deb ... 106s Checking for services that may need to be restarted... 106s Checking init scripts... 106s Checking for services that may need to be restarted... 106s Checking init scripts... 107s Stopping some services possibly affected by the upgrade (will be restarted later): 107s cron: stopping...done. 107s 107s Unpacking libc6:amd64 (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 107s Setting up libc6:amd64 (2.41-1ubuntu1) ... 107s Checking for services that may need to be restarted... 107s Checking init scripts... 107s Restarting services possibly affected by the upgrade: 107s cron: restarting...done. 107s 107s Services restarted successfully. 107s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 108s Preparing to unpack .../libgcc-s1_15-20250222-0ubuntu1_amd64.deb ... 108s Unpacking libgcc-s1:amd64 (15-20250222-0ubuntu1) over (15-20250213-1ubuntu1) ... 108s Setting up libgcc-s1:amd64 (15-20250222-0ubuntu1) ... 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 108s Preparing to unpack .../libstdc++6_15-20250222-0ubuntu1_amd64.deb ... 108s Unpacking libstdc++6:amd64 (15-20250222-0ubuntu1) over (15-20250213-1ubuntu1) ... 108s Setting up libstdc++6:amd64 (15-20250222-0ubuntu1) ... 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 108s Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ... 108s Unpacking ncurses-base (6.5+20250216-2) over (6.5+20250216-1) ... 108s Setting up ncurses-base (6.5+20250216-2) ... 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 108s Preparing to unpack .../ncurses-term_6.5+20250216-2_all.deb ... 108s Unpacking ncurses-term (6.5+20250216-2) over (6.5+20250216-1) ... 109s Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ... 109s Unpacking liblz4-1:amd64 (1.10.0-4) over (1.10.0-3) ... 109s Setting up liblz4-1:amd64 (1.10.0-4) ... 109s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 109s Preparing to unpack .../libsystemd0_257.3-1ubuntu3_amd64.deb ... 109s Unpacking libsystemd0:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 109s Setting up libsystemd0:amd64 (257.3-1ubuntu3) ... 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 109s Preparing to unpack .../libnss-systemd_257.3-1ubuntu3_amd64.deb ... 109s Unpacking libnss-systemd:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 109s Preparing to unpack .../systemd-sysv_257.3-1ubuntu3_amd64.deb ... 109s Unpacking systemd-sysv (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 109s Preparing to unpack .../systemd-resolved_257.3-1ubuntu3_amd64.deb ... 109s Unpacking systemd-resolved (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 109s Preparing to unpack .../libpam-systemd_257.3-1ubuntu3_amd64.deb ... 109s Unpacking libpam-systemd:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 109s Preparing to unpack .../libsystemd-shared_257.3-1ubuntu3_amd64.deb ... 109s Unpacking libsystemd-shared:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 109s Setting up libsystemd-shared:amd64 (257.3-1ubuntu3) ... 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 109s Preparing to unpack .../systemd_257.3-1ubuntu3_amd64.deb ... 109s Unpacking systemd (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 110s Preparing to unpack .../systemd-timesyncd_257.3-1ubuntu3_amd64.deb ... 110s Unpacking systemd-timesyncd (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 110s Preparing to unpack .../systemd-cryptsetup_257.3-1ubuntu3_amd64.deb ... 110s Unpacking systemd-cryptsetup (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 110s Preparing to unpack .../udev_257.3-1ubuntu3_amd64.deb ... 110s Unpacking udev (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 110s Preparing to unpack .../libudev1_257.3-1ubuntu3_amd64.deb ... 110s Unpacking libudev1:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 110s Setting up libudev1:amd64 (257.3-1ubuntu3) ... 110s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 110s Preparing to unpack .../libcap-ng0_0.8.5-4build1_amd64.deb ... 110s Unpacking libcap-ng0:amd64 (0.8.5-4build1) over (0.8.5-4) ... 110s Setting up libcap-ng0:amd64 (0.8.5-4build1) ... 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 110s Preparing to unpack .../libaudit1_1%3a4.0.2-2ubuntu2_amd64.deb ... 110s Unpacking libaudit1:amd64 (1:4.0.2-2ubuntu2) over (1:4.0.2-2ubuntu1) ... 110s Setting up libaudit1:amd64 (1:4.0.2-2ubuntu2) ... 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 110s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu6_amd64.deb ... 110s Unpacking libseccomp2:amd64 (2.5.5-1ubuntu6) over (2.5.5-1ubuntu5) ... 110s Setting up libseccomp2:amd64 (2.5.5-1ubuntu6) ... 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 111s Preparing to unpack .../libselinux1_3.7-3ubuntu3_amd64.deb ... 111s Unpacking libselinux1:amd64 (3.7-3ubuntu3) over (3.7-3ubuntu2) ... 111s Setting up libselinux1:amd64 (3.7-3ubuntu3) ... 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 111s Preparing to unpack .../libapparmor1_4.1.0~beta5-0ubuntu8_amd64.deb ... 111s Unpacking libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) over (4.1.0~beta5-0ubuntu5) ... 111s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ... 111s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ... 111s Setting up libapt-pkg7.0:amd64 (2.9.33) ... 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 111s Preparing to unpack .../archives/apt_2.9.33_amd64.deb ... 111s Unpacking apt (2.9.33) over (2.9.31ubuntu1) ... 111s Setting up apt (2.9.33) ... 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 112s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 112s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 112s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 112s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 112s Setting up python3-minimal (3.13.2-2) ... 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 112s Preparing to unpack .../0-python3_3.13.2-2_amd64.deb ... 112s Unpacking python3 (3.13.2-2) over (3.13.2-1) ... 112s Preparing to unpack .../1-libpython3.13_3.13.2-2_amd64.deb ... 112s Unpacking libpython3.13:amd64 (3.13.2-2) over (3.13.2-1) ... 112s Preparing to unpack .../2-media-types_13.0.0_all.deb ... 112s Unpacking media-types (13.0.0) over (12.0.0) ... 112s Preparing to unpack .../3-libncurses6_6.5+20250216-2_amd64.deb ... 112s Unpacking libncurses6:amd64 (6.5+20250216-2) over (6.5+20250216-1) ... 112s Preparing to unpack .../4-libncursesw6_6.5+20250216-2_amd64.deb ... 112s Unpacking libncursesw6:amd64 (6.5+20250216-2) over (6.5+20250216-1) ... 112s Preparing to unpack .../5-libtinfo6_6.5+20250216-2_amd64.deb ... 112s Unpacking libtinfo6:amd64 (6.5+20250216-2) over (6.5+20250216-1) ... 112s Setting up libtinfo6:amd64 (6.5+20250216-2) ... 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 112s Preparing to unpack .../0-libsqlite3-0_3.46.1-2_amd64.deb ... 112s Unpacking libsqlite3-0:amd64 (3.46.1-2) over (3.46.1-1) ... 113s Preparing to unpack .../1-python3.13_3.13.2-2_amd64.deb ... 113s Unpacking python3.13 (3.13.2-2) over (3.13.2-1) ... 113s Preparing to unpack .../2-python3.13-minimal_3.13.2-2_amd64.deb ... 113s Unpacking python3.13-minimal (3.13.2-2) over (3.13.2-1) ... 113s Preparing to unpack .../3-libpython3.13-minimal_3.13.2-2_amd64.deb ... 113s Unpacking libpython3.13-minimal:amd64 (3.13.2-2) over (3.13.2-1) ... 113s Preparing to unpack .../4-libpython3.13-stdlib_3.13.2-2_amd64.deb ... 113s Unpacking libpython3.13-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 113s Preparing to unpack .../5-libpython3-stdlib_3.13.2-2_amd64.deb ... 113s Unpacking libpython3-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 113s Preparing to unpack .../6-rsync_3.4.1+ds1-3_amd64.deb ... 113s Unpacking rsync (3.4.1+ds1-3) over (3.4.1-0syncable1) ... 113s Selecting previously unselected package libdebuginfod-common. 113s Preparing to unpack .../7-libdebuginfod-common_0.192-4_all.deb ... 113s Unpacking libdebuginfod-common (0.192-4) ... 113s Preparing to unpack .../8-libsemanage-common_3.7-2.1build1_all.deb ... 113s Unpacking libsemanage-common (3.7-2.1build1) over (3.7-2.1) ... 113s Setting up libsemanage-common (3.7-2.1build1) ... 113s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109155 files and directories currently installed.) 113s Preparing to unpack .../libsemanage2_3.7-2.1build1_amd64.deb ... 113s Unpacking libsemanage2:amd64 (3.7-2.1build1) over (3.7-2.1) ... 113s Setting up libsemanage2:amd64 (3.7-2.1build1) ... 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109155 files and directories currently installed.) 114s Preparing to unpack .../libassuan9_3.0.2-2_amd64.deb ... 114s Unpacking libassuan9:amd64 (3.0.2-2) over (3.0.1-2) ... 114s Setting up libassuan9:amd64 (3.0.2-2) ... 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109155 files and directories currently installed.) 114s Preparing to unpack .../00-gir1.2-girepository-2.0_1.83.4-1_amd64.deb ... 114s Unpacking gir1.2-girepository-2.0:amd64 (1.83.4-1) over (1.82.0-4) ... 114s Preparing to unpack .../01-gir1.2-glib-2.0_2.84.0-1_amd64.deb ... 114s Unpacking gir1.2-glib-2.0:amd64 (2.84.0-1) over (2.83.5-1) ... 114s Preparing to unpack .../02-libglib2.0-0t64_2.84.0-1_amd64.deb ... 114s Unpacking libglib2.0-0t64:amd64 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.../23-parted_3.6-5_amd64.deb ... 116s Unpacking parted (3.6-5) over (3.6-4build1) ... 116s Preparing to unpack .../24-libparted2t64_3.6-5_amd64.deb ... 116s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 116s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 116s Unpacking libparted2t64:amd64 (3.6-5) over (3.6-4build1) ... 116s Preparing to unpack .../25-pci.ids_0.0~2025.03.09-1_all.deb ... 116s Unpacking pci.ids (0.0~2025.03.09-1) over (0.0~2025.02.12-1) ... 116s Preparing to unpack .../26-pciutils_1%3a3.13.0-2_amd64.deb ... 116s Unpacking pciutils (1:3.13.0-2) over (1:3.13.0-1) ... 117s Preparing to unpack .../27-libpci3_1%3a3.13.0-2_amd64.deb ... 117s Unpacking libpci3:amd64 (1:3.13.0-2) over (1:3.13.0-1) ... 117s Preparing to unpack .../28-strace_6.13+ds-1ubuntu1_amd64.deb ... 117s Unpacking strace 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(2.44-3ubuntu1) over (2.44-2ubuntu1) ... 117s Preparing to unpack .../36-binutils_2.44-3ubuntu1_amd64.deb ... 117s Unpacking binutils (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 117s Preparing to unpack .../37-binutils-common_2.44-3ubuntu1_amd64.deb ... 117s Unpacking binutils-common:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 117s Preparing to unpack .../38-libsframe1_2.44-3ubuntu1_amd64.deb ... 117s Unpacking libsframe1:amd64 (2.44-3ubuntu1) over (2.44-2ubuntu1) ... 117s Preparing to unpack .../39-hwdata_0.393-3_all.deb ... 117s Unpacking hwdata (0.393-3) over (0.392-1) ... 117s Selecting previously unselected package pnp.ids. 117s Preparing to unpack .../40-pnp.ids_0.393-3_all.deb ... 117s Unpacking pnp.ids (0.393-3) ... 117s Preparing to unpack .../41-linux-tools-common_6.14.0-10.10_all.deb ... 117s Unpacking linux-tools-common (6.14.0-10.10) over (6.12.0-16.16) ... 117s Selecting previously unselected package bpftool. 117s Preparing to unpack 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.../56-initramfs-tools_0.146ubuntu1_all.deb ... 121s Unpacking initramfs-tools (0.146ubuntu1) over (0.145ubuntu3) ... 121s Preparing to unpack .../57-initramfs-tools-core_0.146ubuntu1_all.deb ... 121s Unpacking initramfs-tools-core (0.146ubuntu1) over (0.145ubuntu3) ... 122s Preparing to unpack .../58-initramfs-tools-bin_0.146ubuntu1_amd64.deb ... 122s Unpacking initramfs-tools-bin (0.146ubuntu1) over (0.145ubuntu3) ... 122s Selecting previously unselected package libdebuginfod1t64:amd64. 122s Preparing to unpack .../59-libdebuginfod1t64_0.192-4_amd64.deb ... 122s Unpacking libdebuginfod1t64:amd64 (0.192-4) ... 122s Preparing to unpack .../60-libftdi1-2_1.5-8build1_amd64.deb ... 122s Unpacking libftdi1-2:amd64 (1.5-8build1) over (1.5-8) ... 122s Preparing to unpack .../61-libgpgme11t64_1.24.2-1ubuntu2_amd64.deb ... 122s Unpacking libgpgme11t64:amd64 (1.24.2-1ubuntu2) over (1.24.2-1ubuntu1) ... 122s Preparing to unpack .../62-libjemalloc2_5.3.0-3_amd64.deb ... 122s Unpacking libjemalloc2:amd64 (5.3.0-3) over (5.3.0-2build1) ... 122s Selecting previously unselected package linux-modules-6.14.0-10-generic. 122s Preparing to unpack .../63-linux-modules-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 122s Unpacking linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 122s Selecting previously unselected package linux-image-6.14.0-10-generic. 122s Preparing to unpack .../64-linux-image-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 122s Unpacking linux-image-6.14.0-10-generic (6.14.0-10.10) ... 122s Selecting previously unselected package linux-modules-extra-6.14.0-10-generic. 122s Preparing to unpack .../65-linux-modules-extra-6.14.0-10-generic_6.14.0-10.10_amd64.deb ... 122s Unpacking linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 123s Preparing to unpack .../66-linux-generic_6.14.0-10.10_amd64.deb ... 123s Unpacking linux-generic (6.14.0-10.10) over (6.12.0-16.16+2) ... 123s Preparing to unpack .../67-linux-image-generic_6.14.0-10.10_amd64.deb ... 123s 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(1.0.6-6) over (1.0.6-5) ... 128s Preparing to unpack .../79-python3-rpds-py_0.21.0-2ubuntu2_amd64.deb ... 128s Unpacking python3-rpds-py (0.21.0-2ubuntu2) over (0.21.0-2ubuntu1) ... 128s Preparing to unpack .../80-python3-systemd_235-1build6_amd64.deb ... 128s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 128s Preparing to unpack .../81-python3.13-gdbm_3.13.2-2_amd64.deb ... 128s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 128s Preparing to unpack .../82-ubuntu-kernel-accessories_1.549_amd64.deb ... 128s Unpacking ubuntu-kernel-accessories (1.549) over (1.548) ... 128s Preparing to unpack .../83-cloud-init_25.1-0ubuntu3_all.deb ... 128s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 128s Preparing to unpack .../84-python3-bcrypt_4.2.0-2.1build1_amd64.deb ... 128s Unpacking python3-bcrypt (4.2.0-2.1build1) over (4.2.0-2.1) ... 128s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 128s Setting up media-types (13.0.0) ... 128s Installing new version of config file /etc/mime.types ... 128s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 128s Setting up ubuntu-kernel-accessories (1.549) ... 128s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 128s Setting up pci.ids (0.0~2025.03.09-1) ... 128s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 129s Setting up apt-utils (2.9.33) ... 129s Setting up libdebuginfod-common (0.192-4) ... 129s Setting up exfatprogs (1.2.8-1) ... 129s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 129s Setting up bpftool (7.6.0+6.14.0-10.10) ... 129s Setting up libestr0:amd64 (0.1.11-2) ... 129s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 129s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 129s Setting up dosfstools (4.2-1.2) ... 129s Setting up rsyslog (8.2412.0-2ubuntu2) ... 129s info: The user `syslog' is already a member of `adm'. 130s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 130s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 130s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 130s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 130s Setting up systemd (257.3-1ubuntu3) ... 130s [0;1;39m/usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring.[0m 130s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 130s [0;1;39m/usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring.[0m 131s Setting up libparted2t64:amd64 (3.6-5) ... 131s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 131s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 131s Setting up linux-headers-generic (6.14.0-10.10) ... 131s Setting up libjemalloc2:amd64 (5.3.0-3) ... 131s Setting up locales (2.41-1ubuntu1) ... 131s Installing new version of config file /etc/locale.alias ... 131s Generating locales (this might take a while)... 133s en_US.UTF-8... done 133s Generation complete. 133s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 133s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 133s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 133s Installing new version of config file /etc/apparmor.d/fusermount3 ... 133s Installing new version of config file /etc/apparmor.d/lsusb ... 133s Installing new version of config file /etc/apparmor.d/openvpn ... 134s Reloading AppArmor profiles 135s Setting up libftdi1-2:amd64 (1.5-8build1) ... 135s Setting up libglib2.0-data (2.84.0-1) ... 135s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 135s Setting up libncurses6:amd64 (6.5+20250216-2) ... 135s Setting up strace (6.13+ds-1ubuntu1) ... 135s Setting up xz-utils (5.6.4-1) ... 135s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 136s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 136s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 136s Setting up udev (257.3-1ubuntu3) ... 137s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 139s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 139s Setting up libpci3:amd64 (1:3.13.0-2) ... 139s Setting up whiptail (0.52.24-4ubuntu2) ... 139s Setting up python-apt-common (2.9.9build1) ... 139s Setting up pnp.ids (0.393-3) ... 139s Setting up libnl-3-200:amd64 (3.7.0-1) ... 139s Setting up python3.13-minimal (3.13.2-2) ... 140s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ... 140s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 140s Setting up libc-dev-bin (2.41-1ubuntu1) ... 140s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 140s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 140s Setting up rsync (3.4.1+ds1-3) ... 140s rsync.service is a disabled or a static unit not running, not starting it. 140s Setting up python3.13-gdbm (3.13.2-2) ... 140s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 140s Setting up systemd-resolved (257.3-1ubuntu3) ... 141s Setting up initramfs-tools-bin (0.146ubuntu1) ... 141s Setting up ncurses-term (6.5+20250216-2) ... 141s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 141s Setting up libpython3.13:amd64 (3.13.2-2) ... 141s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 141s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 141s Setting up systemd-sysv (257.3-1ubuntu3) ... 141s Setting up linux-headers-virtual (6.14.0-10.10) ... 141s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 141s Setting up python3.13 (3.13.2-2) ... 142s Setting up htop (3.4.0-2) ... 142s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 144s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 144s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 144s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 144s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 144s Setting up parted (3.6-5) ... 144s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ... 144s Setting up python3 (3.13.2-2) ... 144s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ... 145s Setting up python3-markupsafe (2.1.5-1build4) ... 145s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 147s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 147s Setting up hwdata (0.393-3) ... 147s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 147s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 147s No schema files found: doing nothing. 147s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 147s Setting up linux-perf (6.14.0-10.10) ... 147s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 147s Setting up pciutils (1:3.13.0-2) ... 147s Setting up python3-rpds-py (0.21.0-2ubuntu2) ... 147s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 147s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 147s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 147s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 147s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 147s Setting up curl (8.12.1-3ubuntu1) ... 147s Setting up linux-image-virtual (6.14.0-10.10) ... 147s Setting up initramfs-tools-core (0.146ubuntu1) ... 147s Setting up linux-tools-common (6.14.0-10.10) ... 147s Setting up python3-systemd (235-1build6) ... 147s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 147s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 147s Setting up linux-image-generic (6.14.0-10.10) ... 147s Setting up python3-dbus (1.3.2-5build5) ... 147s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 147s Setting up initramfs-tools (0.146ubuntu1) ... 147s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 147s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 147s update-initramfs: deferring update (trigger activated) 147s Setting up linux-generic (6.14.0-10.10) ... 147s Setting up ubuntu-minimal (1.549) ... 147s Setting up python3-apt (2.9.9build1) ... 148s Setting up python3-bcrypt (4.2.0-2.1build1) ... 148s Setting up python3-yaml (6.0.2-1build2) ... 148s Setting up libfwupd3:amd64 (2.0.6-4) ... 148s Setting up python3-lazr.uri (1.0.6-6) ... 148s Setting up binutils (2.44-3ubuntu1) ... 148s Setting up ubuntu-standard (1.549) ... 148s Setting up cloud-init-base (25.1-0ubuntu3) ... 149s Setting up linux-virtual (6.14.0-10.10) ... 149s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 149s Setting up python3-gi (3.50.0-4build1) ... 150s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 150s Setting up fwupd (2.0.6-4) ... 150s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 151s Setting up cloud-init (25.1-0ubuntu3) ... 151s Processing triggers for man-db (2.13.0-1) ... 152s Processing triggers for dbus (1.16.2-1ubuntu1) ... 152s Processing triggers for shared-mime-info (2.4-5) ... 152s Warning: program compiled against libxml 212 using older 209 153s Processing triggers for libc-bin (2.41-1ubuntu1) ... 153s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 153s /etc/kernel/postinst.d/initramfs-tools: 153s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 153s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 163s /etc/kernel/postinst.d/zz-update-grub: 163s Sourcing file `/etc/default/grub' 163s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 163s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 163s Generating grub configuration file ... 163s Found linux image: /boot/vmlinuz-6.14.0-10-generic 163s Found initrd image: /boot/initrd.img-6.14.0-10-generic 163s Found linux image: /boot/vmlinuz-6.12.0-16-generic 163s Found initrd image: /boot/initrd.img-6.12.0-16-generic 163s Found linux image: /boot/vmlinuz-6.11.0-8-generic 163s Found initrd image: /boot/initrd.img-6.11.0-8-generic 164s Warning: os-prober will not be executed to detect other bootable partitions. 164s Systems on them will not be added to the GRUB boot configuration. 164s Check GRUB_DISABLE_OS_PROBER documentation entry. 164s Adding boot menu entry for UEFI Firmware Settings ... 164s done 164s Processing triggers for initramfs-tools (0.146ubuntu1) ... 164s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 164s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 175s Reading package lists... 175s Building dependency tree... 175s Reading state information... 175s Solving dependencies... 175s The following packages will be REMOVED: 175s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 175s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 175s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 175s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic* 175s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic* 175s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8* 175s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 175s linux-tools-6.12.0-16-generic* 176s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded. 176s After this operation, 545 MB disk space will be freed. 176s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 176s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 176s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 176s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 176s Removing libpython3.12t64:amd64 (3.12.9-1) ... 176s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 176s Removing libnsl2:amd64 (1.3.0-3build3) ... 176s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 176s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 177s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 178s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 179s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 181s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 181s /etc/kernel/postrm.d/initramfs-tools: 181s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 181s /etc/kernel/postrm.d/zz-update-grub: 181s Sourcing file `/etc/default/grub' 181s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 181s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 181s Generating grub configuration file ... 181s Found linux image: /boot/vmlinuz-6.14.0-10-generic 181s Found initrd image: /boot/initrd.img-6.14.0-10-generic 182s Found linux image: /boot/vmlinuz-6.12.0-16-generic 182s Found initrd image: /boot/initrd.img-6.12.0-16-generic 182s Warning: os-prober will not be executed to detect other bootable partitions. 182s Systems on them will not be added to the GRUB boot configuration. 182s Check GRUB_DISABLE_OS_PROBER documentation entry. 182s Adding boot menu entry for UEFI Firmware Settings ... 182s done 182s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ... 182s W: Removing the running kernel 182s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 182s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 182s /etc/kernel/postrm.d/initramfs-tools: 182s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic 182s /etc/kernel/postrm.d/zz-update-grub: 182s Sourcing file `/etc/default/grub' 182s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 182s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 182s Generating grub configuration file ... 182s Found linux image: /boot/vmlinuz-6.14.0-10-generic 182s Found initrd image: /boot/initrd.img-6.14.0-10-generic 183s Warning: os-prober will not be executed to detect other bootable partitions. 183s Systems on them will not be added to the GRUB boot configuration. 183s Check GRUB_DISABLE_OS_PROBER documentation entry. 183s Adding boot menu entry for UEFI Firmware Settings ... 183s done 183s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 183s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 184s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 184s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 184s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 184s Processing triggers for libc-bin (2.41-1ubuntu1) ... 184s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76972 files and directories currently installed.) 184s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 184s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 184s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 184s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 184s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed 184s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 184s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ... 184s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty 185s autopkgtest [22:22:07]: upgrading testbed (apt dist-upgrade and autopurge) 185s Reading package lists... 185s Building dependency tree... 185s Reading state information... 185s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 185s Starting 2 pkgProblemResolver with broken count: 0 185s Done 186s Entering ResolveByKeep 186s 186s Calculating upgrade... 186s The following packages will be upgraded: 186s libc-bin libc-dev-bin libc6 libc6-dev locales 186s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 186s Need to get 10.5 MB of archives. 186s After this operation, 1024 B of additional disk space will be used. 186s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 187s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 187s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 187s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 187s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 188s Preconfiguring packages ... 188s Fetched 10.5 MB in 1s (8155 kB/s) 188s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 188s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 188s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 188s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 188s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 188s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 188s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 188s Setting up libc6:amd64 (2.41-1ubuntu2) ... 189s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 189s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 189s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 189s Setting up libc-bin (2.41-1ubuntu2) ... 189s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 189s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 189s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 189s Setting up locales (2.41-1ubuntu2) ... 190s Generating locales (this might take a while)... 191s en_US.UTF-8... done 191s Generation complete. 191s Setting up libc-dev-bin (2.41-1ubuntu2) ... 191s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 191s Processing triggers for man-db (2.13.0-1) ... 191s Processing triggers for systemd (257.3-1ubuntu3) ... 192s Reading package lists... 193s Building dependency tree... 193s Reading state information... 193s Starting pkgProblemResolver with broken count: 0 193s Starting 2 pkgProblemResolver with broken count: 0 193s Done 193s Solving dependencies... 193s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 194s autopkgtest [22:22:16]: rebooting testbed after setup commands that affected boot 217s autopkgtest [22:22:39]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 219s autopkgtest [22:22:41]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-network 221s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-network 1.19.0-1 (dsc) [2178 B] 221s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-network 1.19.0-1 (tar) [507 kB] 221s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-network 1.19.0-1 (diff) [3492 B] 222s gpgv: Signature made Fri Jan 17 23:25:40 2025 UTC 222s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 222s gpgv: Can't check signature: No public key 222s dpkg-source: warning: cannot verify inline signature for ./r-cran-network_1.19.0-1.dsc: no acceptable signature found 222s autopkgtest [22:22:44]: testing package r-cran-network version 1.19.0-1 222s autopkgtest [22:22:44]: build not needed 224s autopkgtest [22:22:46]: test run-unit-test: preparing testbed 224s Reading package lists... 225s Building dependency tree... 225s Reading state information... 225s Starting pkgProblemResolver with broken count: 0 225s Starting 2 pkgProblemResolver with broken count: 0 225s Done 225s The following NEW packages will be installed: 225s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 225s fonts-glyphicons-halflings libblas3 libcairo2 libdatrie1 libdeflate0 225s libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 225s libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap liblapack3 liblerc4 225s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 225s libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 225s libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 225s libxss1 libxt6t64 node-html5shiv r-base-core r-cran-askpass r-cran-brio 225s r-cran-callr r-cran-cli r-cran-coda r-cran-covr r-cran-crayon r-cran-curl 225s r-cran-desc r-cran-diffobj r-cran-digest r-cran-evaluate r-cran-fansi 225s r-cran-fs r-cran-glue r-cran-httr r-cran-jsonlite r-cran-lattice 225s r-cran-lazyeval r-cran-lifecycle r-cran-magrittr r-cran-matrix r-cran-mime 225s r-cran-network r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 225s r-cran-pkgload r-cran-praise r-cran-processx r-cran-ps r-cran-r6 r-cran-rex 225s r-cran-rlang r-cran-rprojroot r-cran-sna r-cran-statnet.common r-cran-sys 225s r-cran-testthat r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-waldo 225s r-cran-withr r-cran-yaml unzip x11-common xdg-utils zip 225s 0 upgraded, 93 newly installed, 0 to remove and 0 not upgraded. 225s Need to get 64.9 MB of archives. 225s After this operation, 126 MB of additional disk space will be used. 225s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 226s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 226s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 226s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 226s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 226s Get:6 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 226s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 226s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 226s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 226s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 226s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 226s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 226s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 226s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 226s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 226s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 226s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 226s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 226s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 226s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 226s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 226s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 226s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 226s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 226s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 227s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 227s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 227s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 227s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 227s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 227s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 227s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 227s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 227s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 227s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 227s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 227s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 227s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 227s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 227s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 227s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 227s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 227s Get:43 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 227s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 227s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 227s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 227s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 228s Get:48 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 228s Get:49 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 228s Get:50 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 228s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB] 228s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 228s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 228s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 228s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 228s Get:56 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 228s Get:57 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-coda all 0.19-4.1-1 [321 kB] 228s Get:58 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 228s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 228s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 228s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rex all 1.2.1-1 [129 kB] 228s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 6.2.1+dfsg-1ubuntu1 [197 kB] 228s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 228s Get:64 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 228s Get:65 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 228s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 228s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 228s Get:68 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 228s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-covr amd64 3.6.4+dfsg-1 [303 kB] 228s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 228s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 228s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 228s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 228s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 228s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 228s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 228s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 228s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 228s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 228s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 228s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 228s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 228s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 228s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 228s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-statnet.common amd64 4.11.0-1 [278 kB] 228s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-network amd64 1.19.0-1 [833 kB] 228s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 228s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-2 [125 kB] 228s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 228s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 228s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sna amd64 2.8-1 [1257 kB] 228s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-2 [150 kB] 228s Get:93 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 229s Preconfiguring packages ... 229s Fetched 64.9 MB in 3s (20.4 MB/s) 229s Selecting previously unselected package fonts-dejavu-mono. 229s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 229s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 229s Unpacking fonts-dejavu-mono (2.37-8) ... 229s Selecting previously unselected package fonts-dejavu-core. 229s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 229s Unpacking fonts-dejavu-core (2.37-8) ... 229s Selecting previously unselected package fontconfig-config. 229s Preparing to unpack .../02-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 230s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 230s Selecting previously unselected package libfontconfig1:amd64. 230s Preparing to unpack .../03-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 230s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 230s Selecting previously unselected package fontconfig. 230s Preparing to unpack .../04-fontconfig_2.15.0-2ubuntu1_amd64.deb ... 230s Unpacking fontconfig (2.15.0-2ubuntu1) ... 230s Selecting previously unselected package fonts-glyphicons-halflings. 230s Preparing to unpack .../05-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 230s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 230s Selecting previously unselected package libblas3:amd64. 230s Preparing to unpack .../06-libblas3_3.12.1-2_amd64.deb ... 230s Unpacking libblas3:amd64 (3.12.1-2) ... 230s Selecting previously unselected package libpixman-1-0:amd64. 230s Preparing to unpack .../07-libpixman-1-0_0.44.0-3_amd64.deb ... 230s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 230s Selecting previously unselected package libxcb-render0:amd64. 230s Preparing to unpack .../08-libxcb-render0_1.17.0-2_amd64.deb ... 230s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 230s Selecting previously unselected package libxcb-shm0:amd64. 230s Preparing to unpack .../09-libxcb-shm0_1.17.0-2_amd64.deb ... 230s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 230s Selecting previously unselected package libxrender1:amd64. 230s Preparing to unpack .../10-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 230s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 230s Selecting previously unselected package libcairo2:amd64. 230s Preparing to unpack .../11-libcairo2_1.18.2-2_amd64.deb ... 230s Unpacking libcairo2:amd64 (1.18.2-2) ... 230s Selecting previously unselected package libdatrie1:amd64. 230s Preparing to unpack .../12-libdatrie1_0.2.13-3build1_amd64.deb ... 230s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 230s Selecting previously unselected package libdeflate0:amd64. 230s Preparing to unpack .../13-libdeflate0_1.23-1_amd64.deb ... 230s Unpacking libdeflate0:amd64 (1.23-1) ... 230s Selecting previously unselected package libgfortran5:amd64. 230s Preparing to unpack .../14-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 230s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 230s Selecting previously unselected package libgomp1:amd64. 230s Preparing to unpack .../15-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 230s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 230s Selecting previously unselected package libgraphite2-3:amd64. 230s Preparing to unpack .../16-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 230s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 230s Selecting previously unselected package libharfbuzz0b:amd64. 230s Preparing to unpack .../17-libharfbuzz0b_10.2.0-1_amd64.deb ... 230s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 230s Selecting previously unselected package x11-common. 230s Preparing to unpack .../18-x11-common_1%3a7.7+23ubuntu3_all.deb ... 230s Unpacking x11-common (1:7.7+23ubuntu3) ... 230s Selecting previously unselected package libice6:amd64. 230s Preparing to unpack .../19-libice6_2%3a1.1.1-1_amd64.deb ... 230s Unpacking libice6:amd64 (2:1.1.1-1) ... 230s Selecting previously unselected package libjpeg-turbo8:amd64. 230s Preparing to unpack .../20-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 230s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 230s Selecting previously unselected package libjpeg8:amd64. 230s Preparing to unpack .../21-libjpeg8_8c-2ubuntu11_amd64.deb ... 230s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 230s Selecting previously unselected package libjs-bootstrap. 230s Preparing to unpack .../22-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 230s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 230s Selecting previously unselected package liblapack3:amd64. 230s Preparing to unpack .../23-liblapack3_3.12.1-2_amd64.deb ... 230s Unpacking liblapack3:amd64 (3.12.1-2) ... 230s Selecting previously unselected package liblerc4:amd64. 230s Preparing to unpack .../24-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 230s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 230s Selecting previously unselected package libthai-data. 230s Preparing to unpack .../25-libthai-data_0.1.29-2build1_all.deb ... 230s Unpacking libthai-data (0.1.29-2build1) ... 230s Selecting previously unselected package libthai0:amd64. 230s Preparing to unpack .../26-libthai0_0.1.29-2build1_amd64.deb ... 230s Unpacking libthai0:amd64 (0.1.29-2build1) ... 230s Selecting previously unselected package libpango-1.0-0:amd64. 230s Preparing to unpack .../27-libpango-1.0-0_1.56.2-1_amd64.deb ... 230s Unpacking libpango-1.0-0:amd64 (1.56.2-1) ... 230s Selecting previously unselected package libpangoft2-1.0-0:amd64. 230s Preparing to unpack .../28-libpangoft2-1.0-0_1.56.2-1_amd64.deb ... 230s Unpacking libpangoft2-1.0-0:amd64 (1.56.2-1) ... 230s Selecting previously unselected package libpangocairo-1.0-0:amd64. 230s Preparing to unpack .../29-libpangocairo-1.0-0_1.56.2-1_amd64.deb ... 230s Unpacking libpangocairo-1.0-0:amd64 (1.56.2-1) ... 230s Selecting previously unselected package libpaper2:amd64. 230s Preparing to unpack .../30-libpaper2_2.2.5-0.3_amd64.deb ... 230s Unpacking libpaper2:amd64 (2.2.5-0.3) ... 230s Selecting previously unselected package libpaper-utils. 230s Preparing to unpack .../31-libpaper-utils_2.2.5-0.3_amd64.deb ... 230s Unpacking libpaper-utils (2.2.5-0.3) ... 230s Selecting previously unselected package libsharpyuv0:amd64. 230s Preparing to unpack .../32-libsharpyuv0_1.5.0-0.1_amd64.deb ... 230s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 230s Selecting previously unselected package libsm6:amd64. 230s Preparing to unpack .../33-libsm6_2%3a1.2.4-1_amd64.deb ... 230s Unpacking libsm6:amd64 (2:1.2.4-1) ... 230s Selecting previously unselected package libtcl8.6:amd64. 230s Preparing to unpack .../34-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 230s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 231s Selecting previously unselected package libjbig0:amd64. 231s Preparing to unpack .../35-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 231s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 231s Selecting previously unselected package libwebp7:amd64. 231s Preparing to unpack .../36-libwebp7_1.5.0-0.1_amd64.deb ... 231s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 231s Selecting previously unselected package libtiff6:amd64. 231s Preparing to unpack .../37-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 231s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 231s Selecting previously unselected package libxft2:amd64. 231s Preparing to unpack .../38-libxft2_2.3.6-1build1_amd64.deb ... 231s Unpacking libxft2:amd64 (2.3.6-1build1) ... 231s Selecting previously unselected package libxss1:amd64. 231s Preparing to unpack .../39-libxss1_1%3a1.2.3-1build3_amd64.deb 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(0.6.37-1) ... 236s Setting up r-cran-yaml (2.3.10-1) ... 236s Setting up r-cran-evaluate (1.0.3-1) ... 236s Setting up r-cran-fansi (1.0.5-1) ... 236s Setting up r-cran-glue (1.8.0-1) ... 236s Setting up r-cran-cli (3.6.4-1) ... 236s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 236s Setting up r-cran-rprojroot (2.0.4-2) ... 236s Setting up r-cran-askpass (1.2.1-1) ... 236s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 236s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 236s Setting up r-cran-utf8 (1.2.4-1) ... 236s Setting up r-cran-rex (1.2.1-1) ... 236s Setting up r-cran-waldo (0.6.1-2) ... 236s Setting up r-cran-matrix (1.7-3-1) ... 236s Setting up r-cran-statnet.common (4.11.0-1) ... 236s Setting up r-cran-vctrs (0.6.5-1) ... 236s Setting up r-cran-pillar (1.10.1+dfsg-1) ... 236s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 236s Setting up r-cran-callr (3.7.6-1) ... 236s Setting up r-cran-desc (1.4.3-1) ... 236s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 236s Setting up r-cran-network (1.19.0-1) ... 236s Setting up r-cran-sna (2.8-1) ... 236s Setting up r-cran-httr (1.4.7+dfsg-1) ... 236s Setting up r-cran-covr (3.6.4+dfsg-1) ... 236s Setting up r-cran-pkgbuild (1.4.6-1) ... 236s Setting up r-cran-pkgload (1.4.0-1) ... 236s Setting up r-cran-testthat (3.2.3-1) ... 236s Processing triggers for libc-bin (2.41-1ubuntu2) ... 236s Processing triggers for man-db (2.13.0-1) ... 237s Processing triggers for install-info (7.1.1-1) ... 239s autopkgtest [22:23:01]: test run-unit-test: [----------------------- 239s BEGIN TEST general.tests.R 239s 239s R version 4.4.3 (2025-02-28) -- "Trophy Case" 239s Copyright (C) 2025 The R Foundation for Statistical Computing 239s Platform: x86_64-pc-linux-gnu 239s 239s R is free software and comes with ABSOLUTELY NO WARRANTY. 239s You are welcome to redistribute it under certain conditions. 239s Type 'license()' or 'licence()' for distribution details. 239s 239s R is a collaborative project with many contributors. 239s Type 'contributors()' for more information and 239s 'citation()' on how to cite R or R packages in publications. 239s 239s Type 'demo()' for some demos, 'help()' for on-line help, or 239s 'help.start()' for an HTML browser interface to help. 239s Type 'q()' to quit R. 239s 239s > #The following battery of tests is intended to verify the functionality of 239s > #the network library 239s > 239s > #Set to TRUE to run tests 239s > if(FALSE){ 239s + 239s + library(network) 239s + 239s + # ----- check assigning multiple attribute values in a single call ------ 239s + test<-network.initialize(3) 239s + set.vertex.attribute(test,c('a','b'),c(1,2)) 239s + if(!all(test%v%'a'==c(1,1,1) & test%v%'b'==c(2,2,2))){ 239s + stop('setting multiple attribute values with set.vertex.attribute failed') 239s + } 239s + 239s + test<-network.initialize(3) 239s + set.vertex.attribute(test,list('a','b'),c(1,2)) 239s + if(!all(test%v%'a'==c(1,1,1) & test%v%'b'==c(2,2,2))){ 239s + stop('setting multiple attribute values with set.vertex.attribute failed') 239s + } 239s + 239s + test<-network.initialize(3) 239s + set.vertex.attribute(test,c('a','b'),list(c(1,2,3),c(4,5,6))) 239s + if(!all(test%v%'a'==c(1,2,3) & test%v%'b'==c(4,5,6))){ 239s + stop('setting multiple attribute values with set.vertex.attribute failed') 239s + } 239s + 239s + test<-network.initialize(3) 239s + set.vertex.attribute(test,c('a','b'),list(list(1,2,3),list(4,5,6))) 239s + if(!all(test%v%'a'==c(1,2,3) & test%v%'b'==c(4,5,6))){ 239s + stop('setting multiple attribute values with set.vertex.attribute failed') 239s + } 239s + 239s + test<-network.initialize(3) 239s + obj<-list(one='a complex object',two=c('with muliple','parts')) 239s + set.vertex.attribute(test,c('a','b'),list(list(as.list(obj)),list(as.list(obj)))) 239s + if(!all(all.equal(get.vertex.attribute(test,'a',unlist=FALSE)[[1]],obj) & all.equal(get.vertex.attribute(test,'b',unlist=FALSE)[[1]],obj))){ 239s + stop('setting multiple attribute values with list values in set.vertex.attribute failed') 239s + } 239s + 239s + # check assignment to list of networks 239s + net <- network.initialize(2) 239s + netlist <- list(net) 239s + set.network.attribute(netlist[[1]],"test","a value") 239s + if (!"test" %in% list.network.attributes(netlist[[1]])) 239s + stop('assignment to list of networks failed') 239s + 239s + # test multiple assignment for network 239s + 239s + test<-network.initialize(3) 239s + set.network.attribute(test,c("a","b"),1:2) 239s + if (!all(test%n%'a'==1,test%n%'b'==2)){ 239s + stop('mulltiple attribute assignment failed for set.network.attribute') 239s + } 239s + 239s + test<-network.initialize(3) 239s + set.network.attribute(test,list("a","b"),as.list(1:2)) 239s + if (!all(test%n%'a'==1,test%n%'b'==2)){ 239s + stop('mulltiple attribute assignment failed for set.network.attribute') 239s + } 239s + 239s + 239s + 239s + # test multiple assignment for edges 239s + 239s + test<-network.initialize(3) 239s + add.edges(test,tail=1:3,head=c(2,3,1)) 239s + net<-test 239s + set.edge.attribute(net,c("a","b"),1:2) 239s + if (!all(net%n%'a'==1,net%n%'b'==2)){ 239s + stop('mulltiple attribute assignment failed for set.edge.attribute') 239s + } 239s + 239s + net<-test 239s + set.edge.attribute(net,c('a','b'),list(c(1,2,3),c(4,5,6))) 239s + if(!all(net%e%'a'==c(1,2,3) & net%e%'b'==c(4,5,6))){ 239s + stop('setting multiple attribute values with set.edge.attribute failed') 239s + } 239s + 239s + net<-test 239s + set.edge.attribute(net,c('a','b'),list(list(1,2,3),list(4,5,6))) 239s + if(!all(net%e%'a'==c(1,2,3) & net%e%'b'==c(4,5,6))){ 239s + stop('setting multiple attribute values with set.edge.attribute failed') 239s + } 239s + 239s + net<-test 239s + obj<-list(one='a complex object',two=c('with muliple','parts')) 239s + set.edge.attribute(net,c('a','b'),list(list(as.list(obj)),list(as.list(obj)))) 239s + if(!all(all.equal(get.edge.attribute(net,'a',unlist=FALSE)[[1]],obj) & all.equal(get.edge.attribute(net,'b',unlist=FALSE)[[1]],obj))){ 239s + stop('setting multiple attribute values with list values in set.edge.attribute failed') 239s + } 239s + 239s + 239s + 239s + # ---- checks for get.edge.attribute overloading and omit args ---- 239s + net<-network.initialize(3) 239s + add.edges(net,c(1,2,3),c(2,3,1)) 239s + set.edge.attribute(net,'test',"a") 239s + if(!all(get.edge.attribute(net,'test')==c("a","a","a"))){stop("overloading of get.edge.attribute to get.edge.value not working correctly ")} 239s + 239s + # check list output of get.edge.attribute with deleted.edges.omit 239s + delete.edges(net,2) 239s + set.edge.attribute(net,'foo','bar',1) 239s + if(!identical(list('bar',NULL,NULL),get.edge.attribute(net,'foo',unlist=FALSE, deleted.edges.omit = FALSE))){ 239s + stop("deleted.edges.omit argument causing bad return values in get.edge.attribute ") 239s + } 239s + if(!identical(list('bar',NULL),get.edge.attribute(net,'foo',unlist=FALSE, deleted.edges.omit = TRUE))){ 239s + stop("deleted.edges.omit argument causing bad return values in get.edge.attribute ") 239s + } 239s + 239s + # check unlisted output of get.edge.attribute with na.omit and deleted.edges.omit 239s + if(!identical(c('bar'),get.edge.attribute(net,'foo',unlist=TRUE,deleted.edges.omit=TRUE))){ 239s + stop("omission argument causing bad return values in get.edge.attribute") 239s + } 239s + if(!identical(c('bar'),get.edge.attribute(net,'foo',unlist=TRUE,deleted.edges.omit=TRUE))){ 239s + stop("omission arguments causing bad return values in get.edge.attribute") 239s + } 239s + 239s + # check for null.na recoding of non-set attributes 239s + if(!identical(c('bar'),get.edge.attribute(net,'foo',unlist=TRUE,null.na=FALSE))){ 239s + stop("null.na arguments causing bad return values in get.edge.attribute") 239s + } 239s + if(!identical(c('bar',NA),get.edge.attribute(net,'foo',unlist=TRUE,null.na=TRUE))){ 239s + stop("null.na arguments causing bad return values in get.edge.attribute") 239s + } 239s + if(!identical(list('bar',NULL,NULL),get.edge.attribute(net,'foo',unlist=FALSE,null.na=FALSE))){ 239s + stop("null.na arguments causing bad return values in get.edge.attribute") 239s + } 239s + if(!identical(list('bar',NULL,NA),get.edge.attribute(net,'foo',unlist=FALSE,null.na=TRUE))){ 239s + stop("null.na arguments causing bad return values in get.edge.attribute") 239s + } 239s + 239s + 239s + 239s + #mark an edge as missing to test na.omit 239s + set.edge.attribute(net,'na',TRUE,e=1) 239s + 239s + # check that values corresponding to missing edges are ommited 239s + if(!identical(list('bar',NULL,NULL),get.edge.attribute(net,'foo',unlist=FALSE,na.omit=FALSE))){ 239s + stop("na.omit argument causing bad return values in get.edge.attribute") 239s + } 239s + if(!identical(list(NULL,NULL),get.edge.attribute(net,'foo',unlist=FALSE,na.omit=TRUE))){ 239s + stop("na.omit argument causing bad return values in get.edge.attribute") 239s + } 239s + 239s + if(!identical(c('bar'),get.edge.attribute(net,'foo',unlist=TRUE,na.omit=FALSE))){ 239s + stop("na.omit argument causing bad return values in get.edge.attribute") 239s + } 239s + if(!identical(NULL,get.edge.attribute(net,'foo',unlist=TRUE,na.omit=TRUE))){ 239s + stop("na.omit argument causing bad return values in get.edge.attribute") 239s + } 239s + # check for behavior when querying the 'na' attribute 239s + if(!identical(c(TRUE,FALSE),get.edge.attribute(net,'na',na.omit=FALSE))){ 239s + stop("get.edge.attribute did not return correct values for 'na' attribute with na.omit=FALSE") 239s + } 239s + if(!identical(c(FALSE),get.edge.attribute(net,'na',na.omit=TRUE))){ 239s + stop("get.edge.attribute did not return correct values for 'na' attribute with na.omit=TRUE") 239s + } 239s + 239s + # check behavior on a network with no edges 239s + if(!identical(list(),get.edge.attribute(network.initialize(3),'foo',unlist=FALSE))){ 239s + stop("get.edge.attribute did not return correct values network with no edges") 239s + } 239s + 239s + if(!identical(NULL,get.edge.attribute(network.initialize(3),'foo',unlist=TRUE))){ 239s + stop("get.edge.attribute did not return correct values network with no edges") 239s + } 239s + 239s + if(!identical(NULL,get.edge.attribute(net,'bar'))){ 239s + stop("get.edge.attribute did not return correct values for attribute that does not exist") 239s + } 239s + 239s + 239s + # check for behavior of attribute values explicitly set to null 239s + net<-network.initialize(3) 239s + net[1,2]<-1 239s + net[1,3]<-1 239s + set.edge.attribute(net,'nullval',list(NULL)) 239s + 239s + # expect NULL,NULL 239s + if(!identical(list(NULL,NULL),get.edge.attribute(net,'nullval',unlist=FALSE,null.na=FALSE))){ 239s + stop("get.edge.attribute not returning NULL values stored as edge attribute correctly") 239s + } 239s + 239s + # expect that this should return NULL values, which will dissappear on unlisting 239s + # do NOT want to see NA,NA 239s + if(!identical(NULL,get.edge.attribute(net,'nullval',null.na=FALSE))){ 239s + stop("get.edge.attribute not returning NULL values stored as edge attribute correctly") 239s + } 239s + if(!identical(NULL,get.edge.attribute(net,'nullval',null.na=TRUE))){ 239s + stop("get.edge.attribute not returning NULL values stored as edge attribute correctly") 239s + } 239s + 239s + #End tests 239s + } 239s > 239s BEGIN TEST general.tests2.R 239s 239s R version 4.4.3 (2025-02-28) -- "Trophy Case" 239s Copyright (C) 2025 The R Foundation for Statistical Computing 239s Platform: x86_64-pc-linux-gnu 239s 239s R is free software and comes with ABSOLUTELY NO WARRANTY. 239s You are welcome to redistribute it under certain conditions. 239s Type 'license()' or 'licence()' for distribution details. 239s 239s R is a collaborative project with many contributors. 239s Type 'contributors()' for more information and 239s 'citation()' on how to cite R or R packages in publications. 239s 239s Type 'demo()' for some demos, 'help()' for on-line help, or 239s 'help.start()' for an HTML browser interface to help. 239s Type 'q()' to quit R. 239s 239s > #Set to TRUE to run tests 239s > if(FALSE){ 239s + 239s + # additional tests of misc network functionality split off from general.tests.R to avoid speed warnings 239s + library(network) 239s + 239s + # ----- check memory saftey with a big assignment --- 239s + net<-network.initialize(100000) 239s + net<-add.edges(net,1:99999,2:100000) 239s + set.edge.attribute(net,'LETTERS',LETTERS) 239s + 239s + # --- tests for get.induced.subgraph additions -- 239s + data(emon) 239s + # extract the network of responders in MtStHelens network with interaction Frequency of 4 239s + subG4<-get.inducedSubgraph(emon$MtStHelens,eid=which(emon$MtStHelens%e%'Frequency'==4)) 239s + if(network.size(subG4)!=24){ 239s + stop('wrong size eid induced subgraph') 239s + } 239s + 239s + if (any(subG4%e%'Frequency'!=4)){ 239s + stop('bad edges in eid induced subgraph') 239s + } 239s + 239s + # checks for error conditions 239s + # can't specify eid with v or alter 239s + # get.inducedSubgraph(v=1:2,emon$MtStHelens,eid=which(emon$MtStHelens%e%'Frequency'==4)) 239s + # get.inducedSubgraph(alter=1:2,emon$MtStHelens,eid=which(emon$MtStHelens%e%'Frequency'==4)) 239s + # get.inducedSubgraph(emon$MtStHelens,eid=200:300) 239s + 239s + 239s + # ---- tests for specific bugs/edgecases ----- 239s + 239s + # ticket #180 (used to throw error if no edges exist) 239s + set.edge.attribute(network.initialize(3),"test","a") 239s + 239s + # check for network of zero size --used to give error ticket #255 239s + set.vertex.attribute(network.initialize(0),'foo','bar') 239s + 239s + 239s + # check for is.na.network problems #619 239s + x2<-network.initialize(3) 239s + x2[1,2]<-NA 239s + if(is.na.network(x2)[1,2]!=1){ 239s + stop('problem iwth is.na.netowrk') 239s + } 239s + 239s + # check for na problems in which.matrix.type #926 239s + mat <- matrix(rbinom(200, 1, 0.2), nrow = 20) 239s + naIndices <- sample(1:200, 20) 239s + mat[naIndices] <- NA 239s + nw <- network(mat) 239s + 239s + # ---- check for undirected loops getID cases #327 #609 ----- 239s + net<-network.initialize(2,loops=TRUE,directed=FALSE) 239s + net[1,1]<-1 239s + net[1,2]<-1 239s + net[2,2]<-1 239s + if(get.edgeIDs(net,v=1,alter=1)!=1){ 239s + stop("problem with get.edgeIDs on undirected network with loops") 239s + } 239s + if(get.edgeIDs(net,v=2,alter=2)!=3){ 239s + stop("problem with get.edgeIDs on undirected network with loops") 239s + } 239s + 239s + net<-network.initialize(2,loops=TRUE,directed=FALSE) 239s + net[1,2]<-1 239s + if(length(get.edgeIDs(net,v=2,alter=2))>0){ 239s + stop("problem with get.edgeIDs on undirected network with loops") 239s + } 239s + 239s + # check for problem with as.network.edgelist with zero edges #1138 239s + result1 <- as.matrix.network.edgelist(network.initialize(5),as.sna.edgelist = TRUE) 239s + if (nrow(result1) != 0){ 239s + stop('as.matrix.network.edgelist did not return correct value for net with zero edges') 239s + } 239s + result1a <- tibble::as_tibble(network.initialize(5)) 239s + if (nrow(result1a) != 0){ 239s + stop('as_tibble.network did not return correct value for net with zero edges') 239s + } 239s + result2<-as.matrix.network.adjacency(network.initialize(5)) 239s + if(nrow(result2) != 5 & ncol(result2) != 5){ 239s + stop('as.matrix.network.adjacency did not return matrix with correct dimensions') 239s + } 239s + result3<-as.matrix.network.adjacency(network.initialize(0)) 239s + if(nrow(result3) != 0 & ncol(result3) != 0){ 239s + stop('as.matrix.network.adjacency did not return matrix with correct dimensions') 239s + } 239s + result4<-as.matrix.network.incidence(network.initialize(5)) 239s + if(nrow(result4) != 5 & ncol(result4) != 0){ 239s + stop('as.matrix.network.incidence did not return matrix with correct dimensions') 239s + } 239s + result5<-as.matrix.network.incidence(network.initialize(0)) 239s + if(nrow(result5) != 0 & ncol(result5) != 0){ 239s + stop('as.matrix.network.incidence did not return matrix with correct dimensions') 239s + } 239s + 239s + #End test 239s + } 239s > 239s BEGIN TEST list.attribute.tests.R 239s 239s R version 4.4.3 (2025-02-28) -- "Trophy Case" 239s Copyright (C) 2025 The R Foundation for Statistical Computing 239s Platform: x86_64-pc-linux-gnu 239s 239s R is free software and comes with ABSOLUTELY NO WARRANTY. 239s You are welcome to redistribute it under certain conditions. 239s Type 'license()' or 'licence()' for distribution details. 239s 239s R is a collaborative project with many contributors. 239s Type 'contributors()' for more information and 239s 'citation()' on how to cite R or R packages in publications. 239s 239s Type 'demo()' for some demos, 'help()' for on-line help, or 239s 'help.start()' for an HTML browser interface to help. 239s Type 'q()' to quit R. 239s 239s > #Set to TRUE to run tests 239s > if(FALSE){ 239s + 239s + require(network) 239s + 239s + # --------- test list.vertex.attributes --- 239s + 239s + net<-network.initialize(3) 239s + 239s + list.vertex.attributes(net) 239s + 239s + if(!all(list.vertex.attributes(net)==c('na','vertex.names'))){ 239s + stop('list.vertex.attribute did not report default attributes corrrectly') 239s + } 239s + 239s + set.vertex.attribute(net,'letters',c("a","b","c")) 239s + 239s + if(!all(list.vertex.attributes(net)==c('letters','na','vertex.names'))){ 239s + stop('list.vertex.attribute did not report added attributes corrrectly') 239s + } 239s + 239s + 239s + # ----- test list.edge.attributes ---- 239s + 239s + net<-network.initialize(3) 239s + if(length(list.edge.attributes(net))!=0){ 239s + stop("list.edge.attributes did not return empty list for network with no edges") 239s + } 239s + 239s + add.edges(net,1,2) 239s + add.edges(net,2,3) 239s + if(list.edge.attributes(net)!='na'){ 239s + stop("list.edge.attributes did not return 'na' for network with only edges") 239s + } 239s + 239s + set.edge.attribute(net,'letter',c("a","b")) 239s + if(!all(list.edge.attributes(net)==c('letter','na'))){ 239s + stop("list.edge.attributes did not return attribute names for network with edges") 239s + } 239s + 239s + delete.edges(net,eid=1) 239s + if(!all(list.edge.attributes(net)==c('letter','na'))){ 239s + stop("list.edge.attributes did not return attribute names for network deleted edge") 239s + } 239s + 239s + # ---- test list.network.attributes ---- 239s + net<-network.initialize(3) 239s + if(!all(list.network.attributes(net)==c("bipartite", "directed", "hyper","loops","mnext", "multiple","n" ))){ 239s + stop("list.network.attributes returned unexpected values for default attributes of a network") 239s + } 239s + 239s + set.network.attribute(net,'letter',"a") 239s + if(!all(list.network.attributes(net)==c("bipartite", "directed", "hyper","letter","loops","mnext", "multiple","n" ))){ 239s + stop("list.network.attributes returned unexpected values for network with attribute added") 239s + } 239s + 239s + # ----- tests for printing function for edges cases ------ 239s + net<-network.initialize(100) 239s + net%n%'a_matrix'<-matrix(1:100,nrow=10,ncol=10) 239s + net%n%'a_null'<-NULL 239s + net%n%'a_list'<-list(part1=list(c("A","B")),part2=list("c")) 239s + net%n%'a_desc_vec'<-numeric(rep(100,1)) 239s + net%n%'a_net'<-network.initialize(5) 239s + print.network(net) 239s + 239s + #End tests 239s + } 239s > 239s BEGIN TEST network.access.test.R 239s 239s R version 4.4.3 (2025-02-28) -- "Trophy Case" 239s Copyright (C) 2025 The R Foundation for Statistical Computing 239s Platform: x86_64-pc-linux-gnu 239s 239s R is free software and comes with ABSOLUTELY NO WARRANTY. 239s You are welcome to redistribute it under certain conditions. 239s Type 'license()' or 'licence()' for distribution details. 239s 239s R is a collaborative project with many contributors. 239s Type 'contributors()' for more information and 239s 'citation()' on how to cite R or R packages in publications. 239s 239s Type 'demo()' for some demos, 'help()' for on-line help, or 239s 'help.start()' for an HTML browser interface to help. 239s Type 'q()' to quit R. 239s 239s > #Set to TRUE to run tests 239s > if(FALSE){ 239s + 239s + library(network) 239s + 239s + binet = network.initialize(10, bipartite = 6) 239s + set.vertex.attribute(binet, 'myval', paste('b1', 1:6), v=1:6) 239s + set.vertex.attribute(binet, 'myval', paste('b2', 1:4), v=7:10) 239s + 239s + check <- vector() 239s + check[1] <- all(get.vertex.attribute(binet, 'myval') == c("b1 1", "b1 2", "b1 3", "b1 4", "b1 5", "b1 6", "b2 1", "b2 2", "b2 3" ,"b2 4")) 239s + 239s + # check for distinction between bipartite=FALSE and bipartite=0 239s + testA<-network.initialize(3,bipartite=0) 239s + if(!is.bipartite(testA)){ 239s + stop('failed test of is.bipartite for bipartite=0') 239s + } 239s + 239s + testB<-network.initialize(3,bipartite=FALSE) 239s + if(is.bipartite(testB)){ 239s + stop('failed test of is.bipartite for bipartite=FALSE') 239s + } 239s + 239s + testC<-network.initialize(3,bipartite=TRUE) 239s + if(!is.bipartite(testC)){ 239s + stop('failed test of is.bipartite for bipartite=TRUE') 239s + } 239s + 239s + if(!is.bipartite(binet)){ 239s + stop('failed test of is.bipartite for bipartite=6') 239s + } 239s + 239s + # add vertices to bipartite graphs 239s + g = binet; add.vertices(g, 5, last.mode=F) 239s + check[2] <- network.size(g) == 15 239s + check[3] <- get.network.attribute(g, 'bipartite') == 11 239s + check[4] <- identical(get.vertex.attribute(g, 'myval'), 239s + c("b1 1", "b1 2", "b1 3", "b1 4", "b1 5", "b1 6", NA,NA,NA,NA,NA,"b2 1","b2 2","b2 3","b2 4")) 239s + 239s + test<-network.initialize(3,bipartite=0) 239s + test%v%'letters'<-LETTERS[1:3] 239s + add.vertices(test,nv=1,last.mode=FALSE) 239s + if(!identical(test%v%'letters',c(NA,"A","B","C"))){ 239s + stop("Error adding vertices to first mode of network with biparite=0") 239s + } 239s + 239s + test<-network.initialize(3,bipartite=0) 239s + test%v%'letters'<-LETTERS[1:3] 239s + add.vertices(test,nv=1,last.mode=TRUE) 239s + if(!identical(test%v%'letters',c("A","B","C",NA))){ 239s + stop("Error adding vertices to last mode of network with biparite=0") 239s + } 239s + 239s + 239s + g = binet 239s + add.vertices(g, 5, last.mode=T) 239s + check[5] <- network.size(g) == 15 239s + check[6] <- get.network.attribute(g, 'bipartite') == 6 239s + check[7] <- identical(get.vertex.attribute(g, 'myval'), 239s + c("b1 1", "b1 2", "b1 3", "b1 4", "b1 5", "b1 6","b2 1","b2 2","b2 3","b2 4", NA,NA,NA,NA,NA)) 239s + 239s + # replacement operators should always replace 239s + y <- network.initialize(4,dir=FALSE) # This network can have at most 1 edge. 239s + y[1,2] <- NA # Assign NA to (1,2) 239s + y[1,2] <- NA 239s + check[8] <- network.edgecount(y) == 0 239s + check[9] <- network.edgecount(y, na.omit=F) == 1 239s + 239s + y[,] <- 1 239s + check[10] <- network.edgecount(y) == 6 239s + y[,] <- NA 239s + check[11] <- network.edgecount(y) == 0 239s + check[12] <- network.edgecount(y, na.omit=F) == 6 239s + y[,] <- 0 239s + check[13] <- network.edgecount(y, na.omit=F) == 0 239s + 239s + 239s + # ------ test valid.eids function 239s + net<-network.initialize(4) 239s + net[,]<-1 239s + delete.edges(net,eid=4:6) 239s + if(!all(valid.eids(net)==c(1,2,3,7,8,9,10,11,12))){ 239s + stop('valid.eids did not return correct ids for non-null elements of network') 239s + } 239s + 239s + #If everything worked, check is TRUE 239s + if(!all(check)){ #Should be TRUE 239s + stop(paste("network package test failed on test(s):",which(!check))) 239s + } 239s + 239s + #End tests 239s + } 239s > 239s BEGIN TEST network.battery.R 239s 239s R version 4.4.3 (2025-02-28) -- "Trophy Case" 239s Copyright (C) 2025 The R Foundation for Statistical Computing 239s Platform: x86_64-pc-linux-gnu 239s 239s R is free software and comes with ABSOLUTELY NO WARRANTY. 239s You are welcome to redistribute it under certain conditions. 239s Type 'license()' or 'licence()' for distribution details. 239s 239s R is a collaborative project with many contributors. 239s Type 'contributors()' for more information and 239s 'citation()' on how to cite R or R packages in publications. 239s 239s Type 'demo()' for some demos, 'help()' for on-line help, or 239s 'help.start()' for an HTML browser interface to help. 239s Type 'q()' to quit R. 239s 240s > #The following battery of tests is intended to verify the functionality of 240s > #the network library 240s > 240s > #Set to TRUE to run tests 240s > if(FALSE){ 240s + 240s + library(network) 240s + #These functions are intended to mimic functionality from the sna package. 240s + #Said package is not required to use network, but was used in creating this 240s + #battery of tests. 240s + rgraph<-function(n){ 240s + m<-matrix(rbinom(n*n,1,0.5),n,n) 240s + diag(m)<-0 240s + m 240s + } 240s + degree<-function(d,cmode = "freeman") 240s + { 240s + n <- dim(d)[1] 240s + diag(d) <- NA 240s + switch(cmode, indegree = apply(d, 2, sum, na.rm = TRUE), 240s + outdegree = apply(d, 1, sum, na.rm = TRUE), freeman = apply(d, 240s + 2, sum, na.rm = TRUE) + apply(d, 1, sum, na.rm = TRUE)) 240s + } 240s + #gctorture(TRUE) #Uncomment to perform a more intensive (SLOW) test 240s + 240s + # ---- Check assignment, deletion, and adjacency for dyadic graphs ---- 240s + check<-vector() 240s + temp<-network(matrix(0,5,5)) 240s + temp[1,2]<-1 #Add edge 240s + check[1]<-temp[1,2]==1 #Check adjacency 240s + check[2]<-get.network.attribute(temp,"mnext")==2 #Check count 240s + temp[1,2]<-1 #Should have no effect 240s + check[3]<-get.network.attribute(temp,"mnext")==2 #Check count 240s + temp[1,1]<-1 #Should have no effect 240s + check[4]<-temp[1,1]==0 #Shouldn't be present 240s + check[5]<-get.network.attribute(temp,"mnext")==2 #Check count 240s + temp[,2]<-1 #Should add 3 edges 240s + check[6]<-get.network.attribute(temp,"mnext")==5 #Check count 240s + check[7]<-all(temp[,2]==c(1,0,1,1,1)) #Verify row 240s + temp[3:4,3:4]<-1 #Should add 2 edges 240s + check[8]<-get.network.attribute(temp,"mnext")==7 #Check count 240s + temp[,]<-0 #Delete edges 240s + check[9]<-all(temp[,]==matrix(0,5,5)) #Verify that edges were removed 240s + temp[1:2,3:5]<-1 #Add new edges 240s + check[10]<-sum(temp[,])==6 #Check edge sum 240s + temp<-add.vertices(temp,3) #Add vertices 240s + check[11]<-network.size(temp)==8 240s + check[12]<-sum(temp[,])==6 #Edges should still be there 240s + check[13]<-all(temp[,5]==c(1,1,0,0,0,0,0,0)) 240s + temp[8,]<-1 #Add edges to new vertex 240s + check[14]<-all(temp[8,]==c(1,1,1,1,1,1,1,0)) #Verify 240s + temp<-delete.vertices(temp,c(7,8)) #Remove vertices 240s + check[15]<-network.size(temp)==6 #Verify removal 240s + check[16]<-sum(temp[,])==6 #Check edge sum 240s + check[17]<-!any(c(7,8)%in%c(sapply(temp$mel,"[[","inl"),sapply(temp$mel,"[[","outl"))) #Make sure they're really gone! 240s + temp<-network(matrix(0,5,5),directed=FALSE,loops=TRUE) #Create undir graph 240s + check[18]<-is.directed(temp)==FALSE #Some simple gal tests 240s + check[19]<-has.loops(temp)==TRUE 240s + temp[1,]<-1 240s + check[20]<-all(temp[,1]==temp[1,]) #Verify edges 240s + temp<-permute.vertexIDs(temp,5:1) #Permute 240s + check[21]<-all(temp[1,]==c(0,0,0,0,1)) #Verify permutation 240s + check[22]<-all(temp[,5]==rep(1,5)) 240s + check[23]<-all(get.neighborhood(temp,1)%in%c(5,1)) #Check neighborhoods 240s + check[24]<-all(sort(get.neighborhood(temp,5))==1:5) 240s + check[25]<-length(get.edges(temp,5))==5 #Check get.edges 240s + check[26]<-length(get.edges(temp,5,2))==1 240s + g<-rgraph(10) 240s + temp<-network(g) 240s + check[27]<-all(g==temp[,]) #Yet more edge checkage 240s + check[28]<-all(g[3:1,-(4:3)]==temp[3:1,-(4:3)]) 240s + temp[,,,names.eval="newval"]<-matrix(1:100,10,10) #Edge value assignment 240s + check[29]<-all(as.sociomatrix(temp,"newval")==matrix(1:100,10,10)*g) 240s + check[30]<-all(apply(as.matrix.network.incidence(temp),1,sum)==(degree(g,cmode="indegree")-degree(g,cmode="outdegree"))) #Check incidence matrix 240s + check[31]<-all(dim(as.matrix.network.incidence(temp))==c(10,sum(g))) 240s + check[32]<-all(apply(as.matrix.network.incidence(temp,"newval"),1,sum)==(degree(matrix(1:100,10,10)*g,cmode="indegree")-degree(matrix(1:100,10,10)*g,cmode="outdegree"))) 240s + check[33]<-all(as.matrix.network.edgelist(temp,"newval")==cbind(row(g)[g>0],col(g)[g>0],matrix(1:100,10,10)[g>0])) 240s + temp[1:3,1:5,names.eval="newval"]<-matrix(1:15,3,5) 240s + check[34]<-all(as.sociomatrix(temp,"newval")[1:3,1:5]==g[1:3,1:5]*matrix(1:15,3,5)) 240s + temp[,,"na"]<-TRUE #Verify NA filtering 240s + check[35]<-sum(temp[,,na.omit=TRUE])==0 240s + check[36]<-sum(is.na(temp[,,na.omit=FALSE]))==sum(g) 240s + 240s + #---- Check assignment, deletion, and adjacency for hypergraphs ---- 240s + temp<-network.initialize(10,directed=F,hyper=T,loops=T) 240s + check[37]<-sum(temp[,])==0 240s + temp<-add.edge(temp,1:4,1:4,"value",list(5)) 240s + temp<-add.edge(temp,3:5,3:5,"value",list(6)) 240s + temp<-add.edge(temp,4:7,4:7,"value",list(7)) 240s + temp<-add.edge(temp,6:10,6:10,"value",list(8)) 240s + check[38]<-all(as.matrix.network.incidence(temp)==cbind(c(1,1,1,1,0,0,0,0,0,0),c(0,0,1,1,1,0,0,0,0,0),c(0,0,0,1,1,1,1,0,0,0),c(0,0,0,0,0,1,1,1,1,1))) 240s + check[39]<-all(as.matrix.network.incidence(temp,"value")==cbind(5*c(1,1,1,1,0,0,0,0,0,0),6*c(0,0,1,1,1,0,0,0,0,0),7*c(0,0,0,1,1,1,1,0,0,0),8*c(0,0,0,0,0,1,1,1,1,1))) 240s + check[40]<-all(temp[,]==((as.matrix.network.incidence(temp)%*%t(as.matrix.network.incidence(temp)))>0)) 240s + 240s + #---- Check coercion and construction methods ---- 240s + g<-rgraph(10) 240s + temp<-network(g) 240s + check[41]<-all(temp[,]==g) 240s + temp<-as.network(g*matrix(1:100,10,10),names.eval="value",ignore.eval=FALSE) 240s + check[42]<-all(as.sociomatrix(temp,"value")==g*matrix(1:100,10,10)) 240s + temp<-as.network.matrix(as.matrix.network.edgelist(temp,"value"),matrix.type="edgelist",names.eval="value",ignore.eval=FALSE) 240s + check[43]<-all(as.sociomatrix(temp,"value")==g*matrix(1:100,10,10)) 240s + temp<-as.network.matrix(as.matrix.network.incidence(temp,"value"),matrix.type="incidence",names.eval="value",ignore.eval=FALSE) 240s + check[44]<-all(as.sociomatrix(temp,"value")==g*matrix(1:100,10,10)) 240s + 240s + # check functioning of na.rm argument #922 240s + plain<-as.network.matrix(matrix(c(0,1,NA,NA),ncol=2),na.rm=TRUE) 240s + if (network.naedgecount(plain) != 0){ 240s + stop('problem with na values in adjacency matrix coericon') 240s + } 240s + plain<-as.network.matrix(matrix(c(0,1,NA,NA),ncol=2),na.rm=FALSE) 240s + if (network.naedgecount(plain) != 1){ 240s + stop('problem with na values in adjacnecy matrix coericon') 240s + } 240s + 240s + 240s + 240s + # test for as.matrix.network edgelist bug #935 240s + x <- network.initialize(10) 240s + add.edge(x,1,2) 240s + add.edge(x,2,3) 240s + set.edge.attribute(x,'foo','bar',e=2) # i.e. the edge from 2 to 3 240s + if (!identical(as.matrix.network.edgelist(x,'foo'),structure(c("1", "2", "2", "3", NA, "bar"), .Dim = 2:3, n = 10, vnames = 1:10))){ 240s + stop("problem with as.matrix.network.edgelist with attribute and deleted edge") 240s + } 240s + 240s + 240s + 240s + #---- Check attribute assignment/access ---- 240s + g<-rgraph(10) 240s + temp<-network(g) 240s + temp<-set.vertex.attribute(temp,"value",1:10) 240s + check[45]<-all(get.vertex.attribute(temp,"value")==1:10) 240s + temp<-delete.vertex.attribute(temp,"value") 240s + check[46]<-all(is.na(get.vertex.attribute(temp,"value"))) 240s + temp<-set.vertex.attribute(temp,"value",1:5,c(2,4,6,8,10)) 240s + check[47]<-all(get.vertex.attribute(temp,"value")[c(2,4,6,8,10)]==1:5) 240s + temp<-set.network.attribute(temp,"value","pork!") 240s + check[48]<-get.network.attribute(temp,"value")=="pork!" 240s + temp<-delete.network.attribute(temp,"value") 240s + check[49]<-is.null(get.network.attribute(temp,"value")) 240s + temp<-set.edge.attribute(temp,"value",5) 240s + check[50]<-all(get.edge.attribute(temp$mel,"value")==5) 240s + temp<-delete.edge.attribute(temp,"value") 240s + check[51]<-all(is.null(get.edge.attribute(temp$mel,"value"))) 240s + temp<-set.edge.value(temp,"value",g*matrix(1:100,10,10)) 240s + check[52]<-all(get.edge.value(temp,"value")==(g*matrix(1:100,10,10))[g>0]) 240s + check[53]<-all(as.sociomatrix(temp,"value")==(g*matrix(1:100,10,10))) 240s + 240s + 240s + #---- Check additional operators ---- 240s + g<-rgraph(10) 240s + temp<-network(g,names.eval="value",ignore.eval=FALSE) 240s + temp2<-network(g*2,names.eval="value",ignore.eval=FALSE) 240s + check[54]<-all(g==as.sociomatrix(temp+temp2)) 240s + check[55]<-all(g*3==as.sociomatrix(sum(temp,temp2,attrname="value"),"value")) 240s + check[56]<-all(g==as.sociomatrix(temp*temp2)) 240s + check[57]<-all(g*2==as.sociomatrix(prod(temp,temp2,attrname="value"),"value")) 240s + check[58]<-all(0==as.sociomatrix(temp-temp2)) 240s + check[59]<-all(-g==as.sociomatrix(sum(temp,-as.sociomatrix(temp2,"value"),attrname="value"),"value")) 240s + check[60]<-all(((g%*%g)>0)==as.sociomatrix("%c%.network"(temp,temp2))) 240s + check[61]<-all(((g%*%g)>0)==as.sociomatrix(temp%c%temp2)) 240s + check[62]<-all(((!temp)[,]==!g)[diag(10)<1]) 240s + check[63]<-all((temp|temp2)[,]==g) 240s + check[64]<-all((temp&temp2)[,]==g) 240s + temp%v%"value"<-1:10 240s + check[65]<-all(temp%v%"value"==1:10) 240s + temp%n%"value"<-"pork!" 240s + check[66]<-temp%n%"value"=="pork!" 240s + 240s + # ---- Check to ensure that in-place modification is not producing side effects ---- 240s + g<-network.initialize(5); checkg<-g; add.vertices(g,3) 240s + check[67]<-(network.size(checkg)==5)&&(network.size(g)==8) 240s + g<-network.initialize(5); checkg<-g; delete.vertices(g,2) 240s + check[68]<-(network.size(checkg)==5)&&(network.size(g)==4) 240s + g<-network.initialize(5); checkg<-g; add.edge(g,2,3) 240s + check[69]<-(sum(checkg[,])==0)&&(sum(g[,])==1) 240s + g<-network.initialize(5); checkg<-g; add.edges(g,c(2,2,2),c(1,3,4)) 240s + check[70]<-(sum(checkg[,])==0)&&(sum(g[,])==3) 240s + g<-network.initialize(5); checkg<-g; g%v%"boo"<-1:5 240s + check[71]<-all(is.na(checkg%v%"boo"))&&all(g%v%"boo"==1:5) 240s + g<-network.initialize(5); checkg<-g; g%n%"boo"<-1:5 240s + check[72]<-is.null(checkg%n%"boo")&&all(g%n%"boo"==1:5) 240s + g<-network.initialize(5); g[1,]<-1; checkg<-g; g%e%"boo"<-col(matrix(0,5,5)) 240s + check[73]<-is.null(checkg%e%"boo")&&all(g%e%"boo"==2:5) 240s + g<-network.initialize(5); checkg<-g; permute.vertexIDs(g,5:1) 240s + check[74]<-all(checkg%v%"vertex.names"==1:5)&&all(g%v%"vertex.names"==5:1) 240s + g<-network.initialize(5); temp<-(function(){add.vertices(g,3); network.size(g)})() 240s + check[75]<-(network.size(g)==5)&&(temp==8) 240s + g<-network.initialize(5); (function(){g<-network.initialize(4); add.vertices(g,3)})() 240s + check[76]<-(network.size(g)==5) 240s + 240s + # check for operators with undirected edge error ticket #279 240s + # nw1 is assigned tail
head 240s + nw2<-network.initialize(3,directed=FALSE) 240s + nw2[2,1]<-1 240s + 240s + # Which, the binary network operators don't take into account: 240s + check[77]<-network.edgecount(nw1-nw2)==0 # Should have 0, has 1. 240s + check[78]<-network.edgecount(nw1|nw2)==1 # Should have 1, has 2 (1->2 and 2->1). 240s + check[79]<-network.edgecount(nw1&nw2)==1 # Should have 1, has 0 (since it treats 1->2 and 2->1 differently). 240s + check[80]<-network.edgecount(!nw1)==2 # Should have choose(3,2)-1=2, has 3. 240s + check[81]<-network.edgecount(!nw2)==2 # Should have choose(3,2)-1=2, has 2. 240s + 240s + #If everything worked, check is TRUE 240s + if(!all(check)){ #Should be TRUE 240s + stop(paste("network package test failed on test(s):",which(!check))) 240s + } 240s + 240s + #End test 240s + } 240s > 240s BEGIN TEST pathological.tests.R 240s 240s R version 4.4.3 (2025-02-28) -- "Trophy Case" 240s Copyright (C) 2025 The R Foundation for Statistical Computing 240s Platform: x86_64-pc-linux-gnu 240s 240s R is free software and comes with ABSOLUTELY NO WARRANTY. 240s You are welcome to redistribute it under certain conditions. 240s Type 'license()' or 'licence()' for distribution details. 240s 240s R is a collaborative project with many contributors. 240s Type 'contributors()' for more information and 240s 'citation()' on how to cite R or R packages in publications. 240s 240s Type 'demo()' for some demos, 'help()' for on-line help, or 240s 'help.start()' for an HTML browser interface to help. 240s Type 'q()' to quit R. 240s 240s > #Set to TRUE to run tests 240s > if(FALSE){ 240s + 240s + library(network) 240s + if (require(statnet.common,quietly=TRUE)){ 240s + 240s + opttest({ 240s + gctorture(TRUE) 240s + n <- 10 240s + test <- network.initialize(n) 240s + for (i in 1:(n-1)){ 240s + for (j in (i+1):n){ 240s + cat(i,j,'\n') 240s + get.inducedSubgraph(test,v=i:j) 240s + } 240s + } 240s + gctorture(FALSE) 240s + },'Ticket #180 Test 1','NETWORK_pathology_TESTS') 240s + 240s + opttest({ 240s + gctorture(TRUE) 240s + test <- network.initialize(10) 240s + delete.vertices(test,5) 240s + gctorture(FALSE) 240s + },'Ticket #180 Test 2','NETWORK_pathology_TESTS') 240s + 240s + opttest({ 240s + x <- network.initialize(10) 240s + x[,] <- 1 240s + try(set.edge.value(x,'foo',matrix('bar',5,5))) 240s + },'Ticket #827','NETWORK_pathology_TESTS') 240s + 240s + } 240s + 240s + #End tests 240s + } 240s > 240s BEGIN TEST plotflo.R 240s 240s R version 4.4.3 (2025-02-28) -- "Trophy Case" 240s Copyright (C) 2025 The R Foundation for Statistical Computing 240s Platform: x86_64-pc-linux-gnu 240s 240s R is free software and comes with ABSOLUTELY NO WARRANTY. 240s You are welcome to redistribute it under certain conditions. 240s Type 'license()' or 'licence()' for distribution details. 240s 240s R is a collaborative project with many contributors. 240s Type 'contributors()' for more information and 240s 'citation()' on how to cite R or R packages in publications. 240s 240s Type 'demo()' for some demos, 'help()' for on-line help, or 240s 'help.start()' for an HTML browser interface to help. 240s Type 'q()' to quit R. 240s 240s > #Set to TRUE to run tests 240s > if(FALSE){ 240s + 240s + # 240s + # load the library 240s + # 240s + library(network) 240s + # 240s + # attach the sociomatrix for the Florentine marriage data 240s + # This is not yet a graph object. 240s + # 240s + data(flo) 240s + # 240s + # print out the sociomatrix for the Florentine marriage data 240s + # 240s + flo 240s + # 240s + # Create a network object out of the adjacency matrix and print it out 240s + # 240s + nflo <- network(flo,directed=FALSE) 240s + nflo 240s + # 240s + # print out the sociomatrix for the Florentine marriage data 240s + # 240s + print(nflo,matrix.type="adjacency") 240s + # 240s + # plot the Florentine marriage data 240s + # 240s + plot(nflo) 240s + # 240s + # create a vector indicating the Medici family and add it as a covariate to the 240s + # graph object. 240s + # 240s + nflo <- set.vertex.attribute(nflo,"medici",c(0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0)) 240s + nflo 240s + # 240s + # create a vector indicating the Medici family for the graph 240s + # 240s + medici <- rep("",nrow(flo)) 240s + names(medici) <- dimnames(flo)[[1]] 240s + medici[names(medici)=="Medici"] <- "Medici" 240s + # 240s + # plot the marriage data, highlighting the Medici family 240s + # 240s + plot(nflo,vertex.col=1+get.vertex.attribute(nflo,"medici")) 240s + 240s + # plot the emon St. Helens network, with edge widths proportional 240s + # to 'Frequency', and edges labeled by their id 240s + data(emon) 240s + par(mar=c(0,0,0,0)) 240s + plot(emon[[5]],edge.label=TRUE,edge.label.cex=0.6, 240s + edge.col='gray',edge.lwd=(emon[[5]]%e%'Frequency')*2) 240s + 240s + #End tests 240s + } 240s > 240s BEGIN TEST speedTests.R 240s 240s R version 4.4.3 (2025-02-28) -- "Trophy Case" 240s Copyright (C) 2025 The R Foundation for Statistical Computing 240s Platform: x86_64-pc-linux-gnu 240s 240s R is free software and comes with ABSOLUTELY NO WARRANTY. 240s You are welcome to redistribute it under certain conditions. 240s Type 'license()' or 'licence()' for distribution details. 240s 240s R is a collaborative project with many contributors. 240s Type 'contributors()' for more information and 240s 'citation()' on how to cite R or R packages in publications. 240s 240s Type 'demo()' for some demos, 'help()' for on-line help, or 240s 'help.start()' for an HTML browser interface to help. 240s Type 'q()' to quit R. 240s 240s > #Set to TRUE to run tests 240s > if(FALSE){ 240s + 240s + # some really basic speed checks to help us know if we make changes that massively degrade performance 240s + require(network) 240s + 240s + init<-system.time(net<-network.initialize(100000))[3] 240s + setv<-system.time(set.vertex.attribute(net,"foo","bar"))[3] 240s + getv<-system.time(get.vertex.attribute(net,"foo"))[3] 240s + listv<-system.time(list.vertex.attributes(net))[3] 240s + adde<-system.time(add.edges(net,tail=1:99999,head=2:100000))[3] 240s + sete<-system.time(set.edge.attribute(net,"foo","bar"))[3] 240s + gete<-system.time(get.edge.attribute(net,"foo"))[3] 240s + liste<-system.time(list.edge.attributes(net))[3] 240s + addmoree<-system.time(add.edge(net,100000,1))[3] 240s + addmorev<-system.time(add.vertices(net,1))[3] 240s + 240s + 240s + # optionally compare to benchmarks saved in test folder to see if things have changed 240s + # benchmarks<-rbind(init,setv,getv,listv,adde,sete,gete,liste,addmoree,addmorev) 240s + # oldmarks<-read.table(file.choose(),header=TRUE,colClasses=c('character','numeric')) 240s + # all.equal(oldmarks[,1],benchmarks[,1],check.attributes=FALSE) 240s + 240s + # optionally save out benchmarks to test directory 240s + # write.table(benchmarks,file=file.choose()) 240s + 240s + # some absolute thresholds 240s + 240s + if(init>5){ 240s + stop("initializing network for large number of vertices took much longer than expected") 240s + } 240s + 240s + if(setv>5){ 240s + stop("set.vertex.attribute for large number of vertices took much longer than expected") 240s + } 240s + 240s + if(getv>5){ 240s + stop("get.vertex.attribute for large number of vertices took much longer than expected") 240s + } 240s + 240s + if(listv>1){ 240s + stop("list.vertex.attributes for large number of vertices took much longer than expected") 240s + } 240s + 240s + if(adde>5){ 240s + stop("add.edges for a large number of edges took much longer than expected") 240s + } 240s + 240s + if(sete>10){ 240s + stop("set.edge.attribute for a large number of edges took much longer than expected") 240s + } 240s + 240s + if(gete>1){ 240s + stop("get.edge.attribute for a large number of edges took much longer than expected") 240s + } 240s + 240s + if(liste>1){ 240s + stop("list.edge.attribute for a large number of edges took much longer than expected") 240s + } 240s + 240s + if(addmoree>5){ 240s + stop("add.edge for a network with a large number of edges took much longer than expected") 240s + } 240s + 240s + if(addmorev>5){ 240s + stop("add.vertices for a network with large number of vertices took longer than expected") 240s + } 240s + 240s + #End tests 240s + } 240s > 240s BEGIN TEST testthat.R 240s 240s R version 4.4.3 (2025-02-28) -- "Trophy Case" 240s Copyright (C) 2025 The R Foundation for Statistical Computing 240s Platform: x86_64-pc-linux-gnu 240s 240s R is free software and comes with ABSOLUTELY NO WARRANTY. 240s You are welcome to redistribute it under certain conditions. 240s Type 'license()' or 'licence()' for distribution details. 240s 240s R is a collaborative project with many contributors. 240s Type 'contributors()' for more information and 240s 'citation()' on how to cite R or R packages in publications. 240s 240s Type 'demo()' for some demos, 'help()' for on-line help, or 240s 'help.start()' for an HTML browser interface to help. 240s Type 'q()' to quit R. 240s 240s > library(testthat) 240s > library(network) 241s > 241s > test_check("network") 241s 241s ‘network’ 1.19.0 (2024-12-08), part of the Statnet Project 241s * ‘news(package="network")’ for changes since last version 241s * ‘citation("network")’ for citation information 241s * ‘https://statnet.org’ for help, support, and other information 241s 242s [ FAIL 0 | WARN 1 | SKIP 0 | PASS 234 ] 242s 242s [ FAIL 0 | WARN 1 | SKIP 0 | PASS 234 ] 242s > 242s BEGIN TEST vignette.R 242s 242s R version 4.4.3 (2025-02-28) -- "Trophy Case" 242s Copyright (C) 2025 The R Foundation for Statistical Computing 242s Platform: x86_64-pc-linux-gnu 242s 242s R is free software and comes with ABSOLUTELY NO WARRANTY. 242s You are welcome to redistribute it under certain conditions. 242s Type 'license()' or 'licence()' for distribution details. 242s 242s R is a collaborative project with many contributors. 242s Type 'contributors()' for more information and 242s 'citation()' on how to cite R or R packages in publications. 242s 242s Type 'demo()' for some demos, 'help()' for on-line help, or 242s 'help.start()' for an HTML browser interface to help. 242s Type 'q()' to quit R. 242s 242s > require("network") 242s Loading required package: network 242s > set.seed(1702) 242s > 242s > results = NULL 242s > 242s > data("flo") 242s 242s ‘network’ 1.19.0 (2024-12-08), part of the Statnet Project 242s * ‘news(package="network")’ for changes since last version 242s * ‘citation("network")’ for citation information 242s * ‘https://statnet.org’ for help, support, and other information 242s 242s > data("emon") 242s > 242s > net <- network.initialize(5) 242s > net 242s Network attributes: 242s vertices = 5 242s directed = TRUE 242s hyper = FALSE 242s loops = FALSE 242s multiple = FALSE 242s bipartite = FALSE 242s total edges= 0 242s missing edges= 0 242s non-missing edges= 0 242s 242s Vertex attribute names: 242s vertex.names 242s 242s No edge attributes 242s > 242s > nmat <- matrix(rbinom(25, 1, 0.5), nr = 5, nc = 5) 242s > net <- network(nmat, loops = TRUE) 242s > net 242s Network attributes: 242s vertices = 5 242s directed = TRUE 242s hyper = FALSE 242s loops = TRUE 242s multiple = FALSE 242s bipartite = FALSE 242s total edges= 9 242s missing edges= 0 242s non-missing edges= 9 242s 242s Vertex attribute names: 242s vertex.names 242s 242s No edge attributes 242s > 242s > summary(net) 242s Network attributes: 242s vertices = 5 242s directed = TRUE 242s hyper = FALSE 242s loops = TRUE 242s multiple = FALSE 242s bipartite = FALSE 242s total edges = 9 242s missing edges = 0 242s non-missing edges = 9 242s density = 0.36 242s 242s Vertex attributes: 242s vertex.names: 242s character valued attribute 242s 5 valid vertex names 242s 242s No edge attributes 242s 242s Network adjacency matrix: 242s 1 2 3 4 5 242s 1 1 0 1 0 1 242s 2 1 0 0 1 0 242s 3 1 0 1 1 0 242s 4 0 0 1 0 0 242s 5 0 0 0 0 0 242s > results[1] = all(nmat == net[,]) 242s > 242s > net <- as.network(nmat, loops = TRUE) 242s > results[2] = all(nmat == net[,]) 242s > 242s > nflo <- network(flo, directed = FALSE) 242s > nflo 242s Network attributes: 242s vertices = 16 242s directed = FALSE 242s hyper = FALSE 242s loops = FALSE 242s multiple = FALSE 242s bipartite = FALSE 242s total edges= 20 242s missing edges= 0 242s non-missing edges= 20 242s 242s Vertex attribute names: 242s vertex.names 242s 242s No edge attributes 242s > 242s > results[3] = all(nflo[9,] == c(1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 1)) 242s > results[4] = nflo[9,1] == 1 242s > results[5] = nflo[9,4] == 0 242s > results[6] = is.adjacent(nflo, 9, 1) == TRUE 242s > results[7] = is.adjacent(nflo, 9, 4) == FALSE 242s > 242s > results[8] = network.size(nflo) == 16 242s > results[9] = network.edgecount(nflo) == 20 242s > results[10] = network.density(nflo) == 1/6 242s > results[11] = has.loops(nflo) == FALSE 242s > results[12] = is.bipartite(nflo) == FALSE 242s > results[13] = is.directed(nflo) == FALSE 242s > results[14] = is.hyper(nflo) == FALSE 242s > results[15] = is.multiplex(nflo) == FALSE 242s > 242s > as.sociomatrix(nflo) 242s Acciaiuoli Albizzi Barbadori Bischeri Castellani Ginori Guadagni 242s Acciaiuoli 0 0 0 0 0 0 0 242s Albizzi 0 0 0 0 0 1 1 242s Barbadori 0 0 0 0 1 0 0 242s Bischeri 0 0 0 0 0 0 1 242s Castellani 0 0 1 0 0 0 0 242s Ginori 0 1 0 0 0 0 0 242s Guadagni 0 1 0 1 0 0 0 242s Lamberteschi 0 0 0 0 0 0 1 242s Medici 1 1 1 0 0 0 0 242s Pazzi 0 0 0 0 0 0 0 242s Peruzzi 0 0 0 1 1 0 0 242s Pucci 0 0 0 0 0 0 0 242s Ridolfi 0 0 0 0 0 0 0 242s Salviati 0 0 0 0 0 0 0 242s Strozzi 0 0 0 1 1 0 0 242s Tornabuoni 0 0 0 0 0 0 1 242s Lamberteschi Medici Pazzi Peruzzi Pucci Ridolfi Salviati Strozzi 242s Acciaiuoli 0 1 0 0 0 0 0 0 242s Albizzi 0 1 0 0 0 0 0 0 242s Barbadori 0 1 0 0 0 0 0 0 242s Bischeri 0 0 0 1 0 0 0 1 242s Castellani 0 0 0 1 0 0 0 1 242s Ginori 0 0 0 0 0 0 0 0 242s Guadagni 1 0 0 0 0 0 0 0 242s Lamberteschi 0 0 0 0 0 0 0 0 242s Medici 0 0 0 0 0 1 1 0 242s Pazzi 0 0 0 0 0 0 1 0 242s Peruzzi 0 0 0 0 0 0 0 1 242s Pucci 0 0 0 0 0 0 0 0 242s Ridolfi 0 1 0 0 0 0 0 1 242s Salviati 0 1 1 0 0 0 0 0 242s Strozzi 0 0 0 1 0 1 0 0 242s Tornabuoni 0 1 0 0 0 1 0 0 242s Tornabuoni 242s Acciaiuoli 0 242s Albizzi 0 242s Barbadori 0 242s Bischeri 0 242s Castellani 0 242s Ginori 0 242s Guadagni 1 242s Lamberteschi 0 242s Medici 1 242s Pazzi 0 242s Peruzzi 0 242s Pucci 0 242s Ridolfi 1 242s Salviati 0 242s Strozzi 0 242s Tornabuoni 0 242s > 242s > results[16] = all(nflo[,] == as.sociomatrix(nflo)) 242s > results[17] = all(as.matrix(nflo) == as.sociomatrix(nflo)) 242s > as.matrix(nflo,matrix.type = "edgelist") 242s [,1] [,2] 242s [1,] 9 1 242s [2,] 6 2 242s [3,] 7 2 242s [4,] 9 2 242s [5,] 5 3 242s [6,] 9 3 242s [7,] 7 4 242s [8,] 11 4 242s [9,] 15 4 242s [10,] 11 5 242s [11,] 15 5 242s [12,] 8 7 242s [13,] 16 7 242s [14,] 13 9 242s [15,] 14 9 242s [16,] 16 9 242s [17,] 14 10 242s [18,] 15 11 242s [19,] 15 13 242s [20,] 16 13 242s attr(,"n") 242s [1] 16 242s attr(,"vnames") 242s [1] "Acciaiuoli" "Albizzi" "Barbadori" "Bischeri" "Castellani" 242s [6] "Ginori" "Guadagni" "Lamberteschi" "Medici" "Pazzi" 242s [11] "Peruzzi" "Pucci" "Ridolfi" "Salviati" "Strozzi" 242s [16] "Tornabuoni" 242s > 242s > net <- network.initialize(5, loops = TRUE) 242s > net[nmat>0] <- 1 242s > results[18] = all(nmat == net[,]) 242s > 242s > net[,] <- 0 242s > net[,] <- nmat 242s > results[19] = all(nmat == net[,]) 242s > 242s > net[,] <- 0 242s > for(i in 1:5) 242s + for(j in 1:5) 242s + if(nmat[i,j]) 242s + net[i,j] <- 1 242s > results[20] = all(nmat == net[,]) 242s > 242s > net[,] <- 0 242s > add.edges(net, row(nmat)[nmat>0], col(nmat)[nmat>0]) 242s > results[21] = all(nmat == net[,]) 242s > 242s > net[,] <- as.numeric(nmat[,]) 242s > results[22] = all(nmat == net[,]) 242s > 242s > net <- network.initialize(5) 242s > add.edge(net, 2, 3) 242s > net[,] 242s 1 2 3 4 5 242s 1 0 0 0 0 0 242s 2 0 0 1 0 0 242s 3 0 0 0 0 0 242s 4 0 0 0 0 0 242s 5 0 0 0 0 0 242s > results[23] = net[2,3] == 1 242s > 242s > add.edges(net, c(3, 5), c(4, 4)) 242s > net[,] 242s 1 2 3 4 5 242s 1 0 0 0 0 0 242s 2 0 0 1 0 0 242s 3 0 0 0 1 0 242s 4 0 0 0 0 0 242s 5 0 0 0 1 0 242s > results[24] = (net[3,4] == 1 && net[5,4] == 1) 242s > 242s > net[,2] <- 1 242s > net[,] 242s 1 2 3 4 5 242s 1 0 1 0 0 0 242s 2 0 0 1 0 0 242s 3 0 1 0 1 0 242s 4 0 1 0 0 0 242s 5 0 1 0 1 0 242s > results[25] = net[2,2] == 0 242s > 242s > delete.vertices(net, 4) 242s > results[26] = all(net[,] == matrix(c(0,1,0,0,0,0,1,0,0,1,0,0,0,1,0,0), byrow=T, nrow=4)) 242s > 242s > add.vertices(net, 2) 242s > net[,] 242s 1 2 3 5