0s autopkgtest [22:12:42]: starting date and time: 2025-03-15 22:12:42+0000 0s autopkgtest [22:12:42]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [22:12:42]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.lzo7hslp/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-irlba --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-20.secgroup --name adt-plucky-amd64-r-cran-irlba-20250315-221241-juju-7f2275-prod-proposed-migration-environment-2-9d6e6503-ce7f-4d15-a136-75022cca2730 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 350s autopkgtest [22:18:32]: testbed dpkg architecture: amd64 350s autopkgtest [22:18:32]: testbed apt version: 2.9.31ubuntu1 351s autopkgtest [22:18:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 351s autopkgtest [22:18:33]: testbed release detected to be: None 352s autopkgtest [22:18:34]: updating testbed package index (apt update) 352s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 352s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 352s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 352s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 353s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 353s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 353s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 353s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 353s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 353s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 353s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 353s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 353s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 353s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 353s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 353s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 353s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 353s Fetched 1265 kB in 1s (1484 kB/s) 354s Reading package lists... 355s Reading package lists... 355s Building dependency tree... 355s Reading state information... 355s Calculating upgrade... 355s Calculating upgrade... 355s The following package was automatically installed and is no longer required: 355s libnl-genl-3-200 355s Use 'sudo apt autoremove' to remove it. 356s The following NEW packages will be installed: 356s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 356s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 356s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 356s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 356s The following packages will be upgraded: 356s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 356s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base 356s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools 356s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0 356s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 356s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0 356s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1 356s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64 356s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6 356s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200 356s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib 356s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2 356s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 356s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 356s linux-firmware linux-generic linux-headers-generic linux-headers-virtual 356s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 356s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 356s parted pci.ids pciutils pinentry-curses python-apt-common python3 356s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi 356s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal 356s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13 356s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd 356s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd 356s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail 356s xz-utils 356s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 356s Need to get 829 MB of archives. 356s After this operation, 325 MB of additional disk space will be used. 356s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 356s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 356s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 356s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 356s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 356s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 356s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 357s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 357s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 357s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 357s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 357s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 357s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 357s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 357s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 357s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 357s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 357s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 357s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 357s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 357s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 357s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 357s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 357s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 357s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 357s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 357s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 357s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 357s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 357s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 357s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 357s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 357s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 357s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 357s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 357s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 357s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 357s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 357s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 357s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 357s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 357s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 357s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 357s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 357s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 357s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 357s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 358s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 358s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 358s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 358s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 358s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 358s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 358s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 358s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 358s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 358s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 358s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 358s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 358s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 358s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 358s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 358s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 358s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 358s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 358s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 358s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 358s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 358s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 358s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 358s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 358s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 358s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 358s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 358s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 358s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 358s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 358s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 358s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 358s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 358s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 358s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 358s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 358s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 358s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 358s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 358s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 358s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 358s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 358s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 358s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 358s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 358s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 358s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 358s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 358s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 358s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 358s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 358s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 358s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 358s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 358s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 359s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 359s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 359s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 359s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 359s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 359s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 359s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 379s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 379s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 379s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 379s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 379s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 379s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 379s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 379s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 381s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 382s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 387s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 387s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 387s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 387s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 387s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 387s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 387s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 387s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 387s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 387s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 387s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 387s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 387s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 387s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 387s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 387s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 387s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 387s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 387s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 388s Preconfiguring packages ... 388s Fetched 829 MB in 32s (25.9 MB/s) 388s (Reading database ... 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.../23-parted_3.6-5_amd64.deb ... 398s Unpacking parted (3.6-5) over (3.6-4build1) ... 399s Preparing to unpack .../24-libparted2t64_3.6-5_amd64.deb ... 399s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 399s Adding 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 399s Unpacking libparted2t64:amd64 (3.6-5) over (3.6-4build1) ... 399s Preparing to unpack .../25-pci.ids_0.0~2025.03.09-1_all.deb ... 399s Unpacking pci.ids (0.0~2025.03.09-1) over (0.0~2025.02.12-1) ... 399s Preparing to unpack .../26-pciutils_1%3a3.13.0-2_amd64.deb ... 399s Unpacking pciutils (1:3.13.0-2) over (1:3.13.0-1) ... 399s Preparing to unpack .../27-libpci3_1%3a3.13.0-2_amd64.deb ... 399s Unpacking libpci3:amd64 (1:3.13.0-2) over (1:3.13.0-1) ... 399s Preparing to unpack .../28-strace_6.13+ds-1ubuntu1_amd64.deb ... 399s Unpacking strace 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new version of config file /etc/mime.types ... 410s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 410s Setting up ubuntu-kernel-accessories (1.549) ... 410s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 410s Setting up pci.ids (0.0~2025.03.09-1) ... 410s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 411s Setting up apt-utils (2.9.33) ... 411s Setting up libdebuginfod-common (0.192-4) ... 411s Setting up exfatprogs (1.2.8-1) ... 411s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 411s Setting up bpftool (7.6.0+6.14.0-10.10) ... 411s Setting up libestr0:amd64 (0.1.11-2) ... 411s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 411s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 411s Setting up dosfstools (4.2-1.2) ... 411s Setting up rsyslog (8.2412.0-2ubuntu2) ... 411s info: The user `syslog' is already a member of `adm'. 412s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 412s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 412s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 412s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 412s Setting up systemd (257.3-1ubuntu3) ... 412s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 412s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 412s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 413s Setting up libparted2t64:amd64 (3.6-5) ... 413s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 413s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 413s Setting up linux-headers-generic (6.14.0-10.10) ... 413s Setting up libjemalloc2:amd64 (5.3.0-3) ... 413s Setting up locales (2.41-1ubuntu1) ... 413s Installing new version of config file /etc/locale.alias ... 414s Generating locales (this might take a while)... 415s en_US.UTF-8... done 415s Generation complete. 415s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 415s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 415s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 415s Installing new version of config file /etc/apparmor.d/fusermount3 ... 415s Installing new version of config file /etc/apparmor.d/lsusb ... 415s Installing new version of config file /etc/apparmor.d/openvpn ... 416s Reloading AppArmor profiles 418s Setting up libftdi1-2:amd64 (1.5-8build1) ... 418s Setting up libglib2.0-data (2.84.0-1) ... 418s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 418s Setting up libncurses6:amd64 (6.5+20250216-2) ... 418s Setting up strace (6.13+ds-1ubuntu1) ... 418s Setting up xz-utils (5.6.4-1) ... 418s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 418s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 418s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 418s Setting up udev (257.3-1ubuntu3) ... 419s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 421s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 421s Setting up libpci3:amd64 (1:3.13.0-2) ... 421s Setting up whiptail (0.52.24-4ubuntu2) ... 421s Setting up python-apt-common (2.9.9build1) ... 421s Setting up pnp.ids (0.393-3) ... 421s Setting up libnl-3-200:amd64 (3.7.0-1) ... 421s Setting up python3.13-minimal (3.13.2-2) ... 422s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ... 422s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 422s Setting up libc-dev-bin (2.41-1ubuntu1) ... 422s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 422s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 422s Setting up rsync (3.4.1+ds1-3) ... 423s rsync.service is a disabled or a static unit not running, not starting it. 423s Setting up python3.13-gdbm (3.13.2-2) ... 423s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 423s Setting up systemd-resolved (257.3-1ubuntu3) ... 423s Setting up initramfs-tools-bin (0.146ubuntu1) ... 423s Setting up ncurses-term (6.5+20250216-2) ... 423s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 423s Setting up libpython3.13:amd64 (3.13.2-2) ... 423s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 423s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 423s Setting up systemd-sysv (257.3-1ubuntu3) ... 423s Setting up linux-headers-virtual (6.14.0-10.10) ... 423s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 423s Setting up python3.13 (3.13.2-2) ... 424s Setting up htop (3.4.0-2) ... 424s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 426s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 426s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 426s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 426s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 426s Setting up parted (3.6-5) ... 426s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ... 426s Setting up python3 (3.13.2-2) ... 427s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ... 427s Setting up python3-markupsafe (2.1.5-1build4) ... 427s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 429s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 429s Setting up hwdata (0.393-3) ... 429s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 429s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 429s No schema files found: doing nothing. 429s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 429s Setting up linux-perf (6.14.0-10.10) ... 429s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 429s Setting up pciutils (1:3.13.0-2) ... 429s Setting up python3-rpds-py (0.21.0-2ubuntu2) ... 429s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 429s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 429s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 430s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 430s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 430s Setting up curl (8.12.1-3ubuntu1) ... 430s Setting up linux-image-virtual (6.14.0-10.10) ... 430s Setting up initramfs-tools-core (0.146ubuntu1) ... 430s Setting up linux-tools-common (6.14.0-10.10) ... 430s Setting up python3-systemd (235-1build6) ... 430s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 430s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 430s Setting up linux-image-generic (6.14.0-10.10) ... 430s Setting up python3-dbus (1.3.2-5build5) ... 430s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 430s Setting up initramfs-tools (0.146ubuntu1) ... 430s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 430s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 430s update-initramfs: deferring update (trigger activated) 430s Setting up linux-generic (6.14.0-10.10) ... 430s Setting up ubuntu-minimal (1.549) ... 430s Setting up python3-apt (2.9.9build1) ... 430s Setting up python3-bcrypt (4.2.0-2.1build1) ... 430s Setting up python3-yaml (6.0.2-1build2) ... 430s Setting up libfwupd3:amd64 (2.0.6-4) ... 430s Setting up python3-lazr.uri (1.0.6-6) ... 430s Setting up binutils (2.44-3ubuntu1) ... 430s Setting up ubuntu-standard (1.549) ... 430s Setting up cloud-init-base (25.1-0ubuntu3) ... 432s Setting up linux-virtual (6.14.0-10.10) ... 432s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 432s Setting up python3-gi (3.50.0-4build1) ... 432s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 432s Setting up fwupd (2.0.6-4) ... 433s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 433s fwupd.service is a disabled or a static unit not running, not starting it. 433s Setting up cloud-init (25.1-0ubuntu3) ... 433s Processing triggers for man-db (2.13.0-1) ... 434s Processing triggers for dbus (1.16.2-1ubuntu1) ... 434s Processing triggers for shared-mime-info (2.4-5) ... 434s Warning: program compiled against libxml 212 using older 209 435s Processing triggers for libc-bin (2.41-1ubuntu1) ... 435s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 435s /etc/kernel/postinst.d/initramfs-tools: 435s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 435s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 446s /etc/kernel/postinst.d/zz-update-grub: 446s Sourcing file `/etc/default/grub' 446s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 446s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 446s Generating grub configuration file ... 446s Found linux image: /boot/vmlinuz-6.14.0-10-generic 446s Found initrd image: /boot/initrd.img-6.14.0-10-generic 446s Found linux image: /boot/vmlinuz-6.12.0-16-generic 446s Found initrd image: /boot/initrd.img-6.12.0-16-generic 446s Found linux image: /boot/vmlinuz-6.11.0-8-generic 446s Found initrd image: /boot/initrd.img-6.11.0-8-generic 446s Warning: os-prober will not be executed to detect other bootable partitions. 446s Systems on them will not be added to the GRUB boot configuration. 446s Check GRUB_DISABLE_OS_PROBER documentation entry. 446s Adding boot menu entry for UEFI Firmware Settings ... 446s done 446s Processing triggers for initramfs-tools (0.146ubuntu1) ... 446s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 446s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 458s Reading package lists... 459s Building dependency tree... 459s Reading state information... 459s Solving dependencies... 459s The following packages will be REMOVED: 459s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 459s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 459s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 459s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic* 459s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic* 459s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8* 459s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 459s linux-tools-6.12.0-16-generic* 459s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded. 459s After this operation, 545 MB disk space will be freed. 459s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 459s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 459s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 459s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 459s Removing libpython3.12t64:amd64 (3.12.9-1) ... 459s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 460s Removing libnsl2:amd64 (1.3.0-3build3) ... 460s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 460s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 460s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 462s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 463s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 465s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 465s /etc/kernel/postrm.d/initramfs-tools: 465s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 465s /etc/kernel/postrm.d/zz-update-grub: 465s Sourcing file `/etc/default/grub' 465s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 465s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 465s Generating grub configuration file ... 465s Found linux image: /boot/vmlinuz-6.14.0-10-generic 465s Found initrd image: /boot/initrd.img-6.14.0-10-generic 466s Found linux image: /boot/vmlinuz-6.12.0-16-generic 466s Found initrd image: /boot/initrd.img-6.12.0-16-generic 466s Warning: os-prober will not be executed to detect other bootable partitions. 466s Systems on them will not be added to the GRUB boot configuration. 466s Check GRUB_DISABLE_OS_PROBER documentation entry. 466s Adding boot menu entry for UEFI Firmware Settings ... 466s done 466s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ... 466s W: Removing the running kernel 466s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 466s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 466s /etc/kernel/postrm.d/initramfs-tools: 466s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic 466s /etc/kernel/postrm.d/zz-update-grub: 466s Sourcing file `/etc/default/grub' 466s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 466s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 466s Generating grub configuration file ... 466s Found linux image: /boot/vmlinuz-6.14.0-10-generic 466s Found initrd image: /boot/initrd.img-6.14.0-10-generic 467s Warning: os-prober will not be executed to detect other bootable partitions. 467s Systems on them will not be added to the GRUB boot configuration. 467s Check GRUB_DISABLE_OS_PROBER documentation entry. 467s Adding boot menu entry for UEFI Firmware Settings ... 467s done 467s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 467s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 468s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 468s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 469s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 469s Processing triggers for libc-bin (2.41-1ubuntu1) ... 469s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76972 files and directories currently installed.) 469s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 469s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 469s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 469s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 469s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed 469s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 469s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ... 469s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty 469s autopkgtest [22:20:31]: upgrading testbed (apt dist-upgrade and autopurge) 469s Reading package lists... 470s Building dependency tree... 470s Reading state information... 470s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 470s Starting 2 pkgProblemResolver with broken count: 0 470s Done 470s Entering ResolveByKeep 471s 471s Calculating upgrade... 471s The following packages will be upgraded: 471s libc-bin libc-dev-bin libc6 libc6-dev locales 471s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 471s Need to get 10.5 MB of archives. 471s After this operation, 1024 B of additional disk space will be used. 471s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 472s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 472s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 472s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 472s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 473s Preconfiguring packages ... 473s Fetched 10.5 MB in 1s (8645 kB/s) 473s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 473s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 473s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 473s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 473s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 473s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 473s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 473s Setting up libc6:amd64 (2.41-1ubuntu2) ... 474s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 474s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 474s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 474s Setting up libc-bin (2.41-1ubuntu2) ... 474s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 474s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 474s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 474s Setting up locales (2.41-1ubuntu2) ... 475s Generating locales (this might take a while)... 476s en_US.UTF-8... done 476s Generation complete. 476s Setting up libc-dev-bin (2.41-1ubuntu2) ... 476s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 476s Processing triggers for man-db (2.13.0-1) ... 477s Processing triggers for systemd (257.3-1ubuntu3) ... 478s Reading package lists... 478s Building dependency tree... 478s Reading state information... 479s Starting pkgProblemResolver with broken count: 0 479s Starting 2 pkgProblemResolver with broken count: 0 479s Done 479s Solving dependencies... 479s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 480s autopkgtest [22:20:42]: rebooting testbed after setup commands that affected boot 503s autopkgtest [22:21:05]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 506s autopkgtest [22:21:08]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-irlba 508s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-irlba 2.3.5.1-4 (dsc) [2071 B] 508s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-irlba 2.3.5.1-4 (tar) [234 kB] 508s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-irlba 2.3.5.1-4 (diff) [3672 B] 508s gpgv: Signature made Tue May 7 00:07:23 2024 UTC 508s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 508s gpgv: issuer "plessy@debian.org" 508s gpgv: Can't check signature: No public key 508s dpkg-source: warning: cannot verify inline signature for ./r-cran-irlba_2.3.5.1-4.dsc: no acceptable signature found 508s autopkgtest [22:21:10]: testing package r-cran-irlba version 2.3.5.1-4 510s autopkgtest [22:21:12]: build not needed 514s autopkgtest [22:21:16]: test run-unit-test: preparing testbed 514s Reading package lists... 514s Building dependency tree... 515s Reading state information... 515s Starting pkgProblemResolver with broken count: 0 515s Starting 2 pkgProblemResolver with broken count: 0 515s Done 515s The following NEW packages will be installed: 515s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 515s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libgfortran5 libgomp1 515s libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8 515s liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 515s libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 515s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 515s libxft2 libxrender1 libxss1 libxt6t64 r-base-core r-cran-irlba 515s r-cran-lattice r-cran-matrix unzip x11-common xdg-utils zip 515s 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. 515s Need to get 47.3 MB of archives. 515s After this operation, 96.0 MB of additional disk space will be used. 515s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 516s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 516s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 516s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 516s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 516s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 516s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 516s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 516s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 516s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 516s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 516s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 516s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 516s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 516s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 516s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 516s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 516s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 516s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 516s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 516s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 516s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 516s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 516s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 516s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 516s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.2-1 [255 kB] 516s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.2-1 [52.6 kB] 516s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.2-1 [29.1 kB] 516s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 516s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 516s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 516s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 516s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 516s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 516s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 516s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 516s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 516s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 516s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 516s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 516s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 516s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 516s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 516s Get:44 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB] 517s Get:45 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 517s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 518s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-irlba amd64 2.3.5.1-4 [295 kB] 518s Preconfiguring packages ... 518s Fetched 47.3 MB in 2s (19.7 MB/s) 518s Selecting previously unselected package fonts-dejavu-mono. 518s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 518s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 518s Unpacking fonts-dejavu-mono (2.37-8) ... 518s Selecting previously unselected package fonts-dejavu-core. 518s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 518s Unpacking fonts-dejavu-core (2.37-8) ... 519s Selecting previously unselected package fontconfig-config. 519s Preparing to unpack .../02-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 519s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 519s Selecting previously unselected package libfontconfig1:amd64. 519s Preparing to unpack .../03-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 519s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 519s Selecting previously unselected package fontconfig. 519s Preparing to unpack .../04-fontconfig_2.15.0-2ubuntu1_amd64.deb ... 519s Unpacking fontconfig (2.15.0-2ubuntu1) ... 519s Selecting previously unselected package libblas3:amd64. 519s Preparing to unpack .../05-libblas3_3.12.1-2_amd64.deb ... 519s Unpacking libblas3:amd64 (3.12.1-2) ... 519s Selecting previously unselected package libpixman-1-0:amd64. 519s Preparing to unpack .../06-libpixman-1-0_0.44.0-3_amd64.deb ... 519s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 519s Selecting previously unselected package libxcb-render0:amd64. 519s Preparing to unpack .../07-libxcb-render0_1.17.0-2_amd64.deb ... 519s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 519s Selecting previously unselected package libxcb-shm0:amd64. 519s Preparing to unpack .../08-libxcb-shm0_1.17.0-2_amd64.deb ... 519s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 519s Selecting previously unselected package libxrender1:amd64. 519s Preparing to unpack .../09-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 519s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 519s Selecting previously unselected package libcairo2:amd64. 519s Preparing to unpack .../10-libcairo2_1.18.2-2_amd64.deb ... 519s Unpacking libcairo2:amd64 (1.18.2-2) ... 519s Selecting previously unselected package libdatrie1:amd64. 519s Preparing to unpack .../11-libdatrie1_0.2.13-3build1_amd64.deb ... 519s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 519s Selecting previously unselected package libdeflate0:amd64. 519s Preparing to unpack .../12-libdeflate0_1.23-1_amd64.deb ... 519s Unpacking libdeflate0:amd64 (1.23-1) ... 519s Selecting previously unselected package libgfortran5:amd64. 519s Preparing to unpack .../13-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 519s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 519s Selecting previously unselected package libgomp1:amd64. 519s Preparing to unpack .../14-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 519s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 519s Selecting previously unselected package libgraphite2-3:amd64. 519s Preparing to unpack .../15-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 519s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 519s Selecting previously unselected package libharfbuzz0b:amd64. 519s Preparing to unpack .../16-libharfbuzz0b_10.2.0-1_amd64.deb ... 519s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 519s Selecting previously unselected package x11-common. 519s Preparing to unpack .../17-x11-common_1%3a7.7+23ubuntu3_all.deb ... 519s Unpacking x11-common (1:7.7+23ubuntu3) ... 519s Selecting previously unselected package libice6:amd64. 519s Preparing to unpack .../18-libice6_2%3a1.1.1-1_amd64.deb ... 519s Unpacking libice6:amd64 (2:1.1.1-1) ... 519s Selecting previously unselected package libjpeg-turbo8:amd64. 519s Preparing to unpack .../19-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 519s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 519s Selecting previously unselected package libjpeg8:amd64. 519s Preparing to unpack .../20-libjpeg8_8c-2ubuntu11_amd64.deb ... 519s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 519s Selecting previously unselected package liblapack3:amd64. 519s Preparing to unpack .../21-liblapack3_3.12.1-2_amd64.deb ... 519s Unpacking liblapack3:amd64 (3.12.1-2) ... 520s Selecting previously unselected package liblerc4:amd64. 520s Preparing to unpack .../22-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 520s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 520s Selecting previously unselected package libthai-data. 520s Preparing to unpack .../23-libthai-data_0.1.29-2build1_all.deb ... 520s Unpacking libthai-data (0.1.29-2build1) ... 520s Selecting previously unselected package libthai0:amd64. 520s Preparing to unpack .../24-libthai0_0.1.29-2build1_amd64.deb ... 520s Unpacking libthai0:amd64 (0.1.29-2build1) ... 520s Selecting previously unselected package libpango-1.0-0:amd64. 520s Preparing to unpack .../25-libpango-1.0-0_1.56.2-1_amd64.deb ... 520s Unpacking libpango-1.0-0:amd64 (1.56.2-1) ... 520s Selecting previously unselected package libpangoft2-1.0-0:amd64. 520s Preparing to unpack .../26-libpangoft2-1.0-0_1.56.2-1_amd64.deb ... 520s Unpacking libpangoft2-1.0-0:amd64 (1.56.2-1) ... 520s Selecting previously unselected package libpangocairo-1.0-0:amd64. 520s Preparing to unpack .../27-libpangocairo-1.0-0_1.56.2-1_amd64.deb ... 520s Unpacking libpangocairo-1.0-0:amd64 (1.56.2-1) ... 520s Selecting previously unselected package libpaper2:amd64. 520s Preparing to unpack .../28-libpaper2_2.2.5-0.3_amd64.deb ... 520s Unpacking libpaper2:amd64 (2.2.5-0.3) ... 520s Selecting previously unselected package libpaper-utils. 520s Preparing to unpack .../29-libpaper-utils_2.2.5-0.3_amd64.deb ... 520s Unpacking libpaper-utils (2.2.5-0.3) ... 520s Selecting previously unselected package libsharpyuv0:amd64. 520s Preparing to unpack .../30-libsharpyuv0_1.5.0-0.1_amd64.deb ... 520s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 520s Selecting previously unselected package libsm6:amd64. 520s Preparing to unpack .../31-libsm6_2%3a1.2.4-1_amd64.deb ... 520s Unpacking libsm6:amd64 (2:1.2.4-1) ... 520s Selecting previously unselected package libtcl8.6:amd64. 520s Preparing to unpack .../32-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 520s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 520s Selecting previously unselected package libjbig0:amd64. 520s Preparing to unpack .../33-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 520s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 520s Selecting previously unselected package libwebp7:amd64. 520s Preparing to unpack .../34-libwebp7_1.5.0-0.1_amd64.deb ... 520s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 520s Selecting previously unselected package libtiff6:amd64. 520s Preparing to unpack .../35-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 520s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 520s Selecting previously unselected package libxft2:amd64. 520s Preparing to unpack .../36-libxft2_2.3.6-1build1_amd64.deb ... 520s Unpacking libxft2:amd64 (2.3.6-1build1) ... 520s Selecting previously unselected package libxss1:amd64. 520s Preparing to unpack .../37-libxss1_1%3a1.2.3-1build3_amd64.deb ... 520s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 520s Selecting previously unselected package libtk8.6:amd64. 520s Preparing to unpack .../38-libtk8.6_8.6.16-1_amd64.deb ... 520s Unpacking libtk8.6:amd64 (8.6.16-1) ... 520s Selecting previously unselected package libxt6t64:amd64. 520s Preparing to unpack .../39-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 520s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 520s Selecting previously unselected package zip. 520s Preparing to unpack .../40-zip_3.0-14ubuntu2_amd64.deb ... 520s Unpacking zip (3.0-14ubuntu2) ... 520s Selecting previously unselected package unzip. 520s Preparing to unpack .../41-unzip_6.0-28ubuntu6_amd64.deb ... 520s Unpacking unzip (6.0-28ubuntu6) ... 520s Selecting previously unselected package xdg-utils. 520s Preparing to unpack .../42-xdg-utils_1.2.1-2ubuntu1_all.deb ... 520s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 520s Selecting previously unselected package r-base-core. 520s Preparing to unpack .../43-r-base-core_4.4.3-1_amd64.deb ... 520s Unpacking r-base-core (4.4.3-1) ... 521s Selecting previously unselected package r-cran-lattice. 521s Preparing to unpack .../44-r-cran-lattice_0.22-6-1_amd64.deb ... 521s Unpacking r-cran-lattice (0.22-6-1) ... 521s Selecting previously unselected package r-cran-matrix. 521s Preparing to unpack .../45-r-cran-matrix_1.7-3-1_amd64.deb ... 521s Unpacking r-cran-matrix (1.7-3-1) ... 521s Selecting previously unselected package r-cran-irlba. 521s Preparing to unpack .../46-r-cran-irlba_2.3.5.1-4_amd64.deb ... 521s Unpacking r-cran-irlba (2.3.5.1-4) ... 521s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 521s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 521s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 521s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 521s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 521s Setting up libdatrie1:amd64 (0.2.13-3build1) ... 521s Setting up libxcb-render0:amd64 (1.17.0-2) ... 521s Setting up unzip (6.0-28ubuntu6) ... 521s Setting up x11-common (1:7.7+23ubuntu3) ... 521s Setting up libdeflate0:amd64 (1.23-1) ... 521s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 521s Setting up libgomp1:amd64 (15-20250222-0ubuntu1) ... 521s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 521s Setting up zip (3.0-14ubuntu2) ... 521s Setting up libblas3:amd64 (3.12.1-2) ... 521s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 521s Setting up fonts-dejavu-mono (2.37-8) ... 521s Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ... 521s Setting up fonts-dejavu-core (2.37-8) ... 521s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 521s Setting up libgfortran5:amd64 (15-20250222-0ubuntu1) ... 521s Setting up libwebp7:amd64 (1.5.0-0.1) ... 521s Setting up libharfbuzz0b:amd64 (10.2.0-1) ... 521s Setting up libthai-data (0.1.29-2build1) ... 521s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 521s Setting up libpaper2:amd64 (2.2.5-0.3) ... 521s Setting up xdg-utils (1.2.1-2ubuntu1) ... 521s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 521s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 521s Setting up libice6:amd64 (2:1.1.1-1) ... 521s Setting up liblapack3:amd64 (3.12.1-2) ... 521s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 521s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 522s Setting up libpaper-utils (2.2.5-0.3) ... 522s Setting up libthai0:amd64 (0.1.29-2build1) ... 522s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 522s Setting up libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 522s Setting up libsm6:amd64 (2:1.2.4-1) ... 522s Setting up fontconfig (2.15.0-2ubuntu1) ... 524s Regenerating fonts cache... done. 524s Setting up libxft2:amd64 (2.3.6-1build1) ... 524s Setting up libtk8.6:amd64 (8.6.16-1) ... 524s Setting up libpango-1.0-0:amd64 (1.56.2-1) ... 524s Setting up libcairo2:amd64 (1.18.2-2) ... 524s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ... 524s Setting up libpangoft2-1.0-0:amd64 (1.56.2-1) ... 524s Setting up libpangocairo-1.0-0:amd64 (1.56.2-1) ... 524s Setting up r-base-core (4.4.3-1) ... 524s Creating config file /etc/R/Renviron with new version 524s Setting up r-cran-lattice (0.22-6-1) ... 524s Setting up r-cran-matrix (1.7-3-1) ... 524s Setting up r-cran-irlba (2.3.5.1-4) ... 524s Processing triggers for libc-bin (2.41-1ubuntu2) ... 524s Processing triggers for man-db (2.13.0-1) ... 525s Processing triggers for install-info (7.1.1-1) ... 526s autopkgtest [22:21:28]: test run-unit-test: [----------------------- 527s 527s R version 4.4.3 (2025-02-28) -- "Trophy Case" 527s Copyright (C) 2025 The R Foundation for Statistical Computing 527s Platform: x86_64-pc-linux-gnu 527s 527s R is free software and comes with ABSOLUTELY NO WARRANTY. 527s You are welcome to redistribute it under certain conditions. 527s Type 'license()' or 'licence()' for distribution details. 527s 527s R is a collaborative project with many contributors. 527s Type 'contributors()' for more information and 527s 'citation()' on how to cite R or R packages in publications. 527s 527s Type 'demo()' for some demos, 'help()' for on-line help, or 527s 'help.start()' for an HTML browser interface to help. 527s Type 'q()' to quit R. 527s 527s > Stangle("irlba.Rnw") 527s Writing to file irlba.R 527s > source("irlba.R", echo=TRUE) 527s > 527s irlba.Rnw passed 527s 527s R version 4.4.3 (2025-02-28) -- "Trophy Case" 527s Copyright (C) 2025 The R Foundation for Statistical Computing 527s Platform: x86_64-pc-linux-gnu 527s 527s R is free software and comes with ABSOLUTELY NO WARRANTY. 527s You are welcome to redistribute it under certain conditions. 527s Type 'license()' or 'licence()' for distribution details. 527s 527s R is a collaborative project with many contributors. 527s Type 'contributors()' for more information and 527s 'citation()' on how to cite R or R packages in publications. 527s 527s Type 'demo()' for some demos, 'help()' for on-line help, or 527s 'help.start()' for an HTML browser interface to help. 527s Type 'q()' to quit R. 527s 527s > require("irlba") 527s Loading required package: irlba 527s Loading required package: Matrix 528s > 528s > for (FAST in c(FALSE, TRUE)) 528s + { 528s + # Dense matrix 528s + set.seed(1) 528s + A <- matrix(rnorm(400), 20) 528s + L <- irlba(A, nu=2, nv=2, tol=1e-9, fastpath=FAST) 528s + S <- svd(A, nu=2, nv=2) 528s + if (!isTRUE(all.equal(L$d, S$d[1:2]))) 528s + { 528s + stop("Failed simple dense singular value test", " fastpath=", FAST) 528s + } 528s + 528s + # restart 528s + L1 <- irlba(A, nv=3, v=L, fastpath=FAST) 528s + if (!isTRUE(all.equal(L1$d, S$d[1:3]))) 528s + { 528s + stop("Failed restart", " fastpath=", FAST) 528s + } 528s + 528s + # unequal nu, nv 528s + L <- irlba(A, nv=2, nu=3, fastpath=FAST) 528s + if (!isTRUE(ncol(L$v) == 2 && ncol(L$u) == 3)) 528s + { 528s + stop("Failed unequal nu,nv", " fastpath=", FAST) 528s + } 528s + 528s + # Scaling and centering, dense 528s + s <- sqrt(apply(A, 2, crossprod)) 528s + m <- colMeans(A) 528s + L <- irlba(A, 3, tol=1e-9, center=m, scale=s, fastpath=FAST) 528s + S <- svd(scale(A, center=TRUE, scale=s)) 528s + if (!isTRUE(all.equal(L$d, S$d[1:3]))) 528s + { 528s + stop("Failed scaling/centering test", " fastpath=", FAST) 528s + } 528s + # Scale only, non-square, dense 528s + A <- matrix(rnorm(200), 10) 528s + s <- seq(1, ncol(A)) 528s + m <- colMeans(A) 528s + L <- irlba(A, 3, tol=1e-9, scale=s, fastpath=FAST) 528s + S <- svd(scale(A, center=FALSE, scale=s)) 528s + if (!isTRUE(all.equal(L$d, S$d[1:3]))) 528s + { 528s + stop("Failed dense scaling test", " fastpath=", FAST) 528s + } 528s + # Center only, non-square, dense 528s + L <- irlba(A, 3, tol=1e-9, center=m, fastpath=FAST) 528s + S <- svd(scale(A, center=TRUE, scale=FALSE)) 528s + if (!isTRUE(all.equal(L$d, S$d[1:3]))) 528s + { 528s + stop("Failed dense centering test", " fastpath=", FAST) 528s + } 528s + # Sparse matrix 528s + require("Matrix") 528s + K <- 400 528s + N <- 2000 528s + i <- sample(K, size=N, replace=TRUE) 528s + j <- sample(K, size=N, replace=TRUE) 528s + A <- sparseMatrix(i, j, x=rnorm(N)) 528s + L <- irlba(A, nu=2, nv=2, tol=1e-9, fastpath=FAST) 528s + S <- svd(A, nu=2, nv=2) 528s + if (!isTRUE(all.equal(L$d, S$d[1:2]))) 528s + { 528s + stop("Failed simple sparse singular value test", " fastpath=", FAST) 528s + } 528s + # Center only, sparse 528s + m <- colMeans(A) 528s + L <- irlba(A, 3, tol=1e-9, center=m, fastpath=FAST) 528s + S <- svd(scale(A, center=TRUE, scale=FALSE)) 528s + if (!isTRUE(all.equal(L$d, S$d[1:3]))) 528s + { 528s + stop("Failed sparse centering test", " fastpath=", FAST) 528s + } 528s + # scale only, spase 528s + s <- seq(1, ncol(A)) 528s + L <- irlba(A, 3, tol=1e-9, scale=s, fastpath=FAST) 528s + S <- svd(scale(A, center=FALSE, scale=s)) 528s + if (!isTRUE(all.equal(L$d, S$d[1:3]))) 528s + { 528s + stop("Failed sparse scaling test", " fastpath=", FAST) 528s + } 528s + 528s + # Symmetric partial eigendecomposition 528s + set.seed(1) 528s + V <- qr.Q(qr(matrix(runif(100), nrow=10))) 528s + x <- V %*% diag(c(10, -9, 8, -7, 6, -5, 4, -3, 2, -1)) %*% t(V) 528s + if (!isTRUE(all.equal(partial_eigen(x, 3, fastpath=FAST)$values, c(10, 8, 6)))) 528s + { 528s + stop("Failed partial_eigen test", " fastpath=", FAST) 528s + } 528s + 528s + # Test right-only option 528s + L <- irlba(A, 2, tol=1e-3, right_only=TRUE, fastpath=FAST, work=20) 528s + S <- svd(A, nu=2, nv=2) 528s + if (isTRUE(max(L$d - S$d[1:2]) > 1e-3)) 528s + { 528s + stop("Failed right_only test", " fastpath=", FAST) 528s + } 528s + 528s + # Dense complex-valued matrix 528s + A <- matrix(rnorm(400), 20) + 1i * matrix(rnorm(400), 20) 528s + L <- irlba(A, nu=2, nv=2, tol=1e-9, fastpath=FAST) 528s + S <- svd(A, nu=2, nv=2) 528s + if (!isTRUE(all.equal(L$d, S$d[1:2]))) 528s + { 528s + stop("Failed complex-valued dense singular value test", " fastpath=", FAST) 528s + } 528s + 528s + # test extra reorthogonalization 528s + L <- irlba(A, nu=2, nv=2, tol=1e-9, reorth=TRUE, fastpath=FAST) 528s + if (!isTRUE(all.equal(L$d, S$d[1:2]))) 528s + { 528s + stop("Failed reorthogonalization test", " fastpath=", FAST) 528s + } 528s + 528s + # very non-square dense matrices 528s + set.seed(1) 528s + A <- matrix(rnorm(2000), 20) 528s + L1 <- irlba(A, nu=2, nv=2, tol=1e-9, fastpath=FAST) 528s + L2 <- irlba(t(A), nu=2, nv=2, tol=1e-9, fastpath=FAST) 528s + if (!isTRUE(all.equal(L1$d, L2$d))) 528s + { 528s + stop("Failed nonsquare test", " fastpath=", FAST) 528s + } 528s + 528s + # This pathological example was provided by Giuseppe Rodriguez, http://bugs.unica.it/~gppe/ 528s + # The singular values cluster at 1 and 0, making it hard to converge to a truncated 528s + # subspace containing the largest few singular values (they are all very close). 528s + # Or, for that matter, the smallest. 528s + # 528s + # Reference: 528s + # J. M. Varah. The Prolate matrix. Linear Algebra and Appl., 528s + # 187:269-278, 1993. 528s + # Michela Redivo-Zaglia, University of Padova, Italy 528s + # Email: Michela.RedivoZaglia@unipd.it 528s + # Giuseppe Rodriguez, University of Cagliari, Italy 528s + # Email: rodriguez@unica.it 528s + tprolate <- function(n, w=0.25) 528s + { 528s + a <- rep(0, n) 528s + a[1] <- 2 * w 528s + a[2:n] <- sin(2 * pi * w * (1:(n-1))) / (pi * (1:(n-1))) 528s + toeplitz(a) 528s + } 528s + 528s + x <- tprolate(512) 528s + set.seed(1) 528s + l <- irlba(x, nv=20, fastpath=FAST) 528s + if (isTRUE(max(abs(l$d - 1)) > 1e-2)) 528s + { 528s + stop("Failed tprolate test fastpath=", FAST) 528s + } 528s + 528s + # test for issue #7 and issue #14 528s + mx <- matrix(sample(1:100, 100 * 100, replace=TRUE), nrow=100) 528s + set.seed(1) 528s + l <- irlba(mx, nv=30, center=colMeans(mx), fastpath=FAST) 528s + s <- svd(scale(mx, center=TRUE, scale=FALSE)) 528s + if (isTRUE(max(abs(l$d - s$d[1:30])) > 1e-3)) 528s + { 528s + stop("Failed integer matrix test fastpath=", FAST) 528s + } 528s + 528s + # test for https://github.com/bwlewis/irlba/issues/22 528s + set.seed(1000) 528s + ncells <- 50 528s + ngenes <- 1000 528s + counts <- matrix(as.double(rpois(ncells*ngenes, lambda=100)), nrow=ncells) 528s + centers <- colMeans(counts) 528s + set.seed(1) 528s + out <- irlba(scale(counts, scale=FALSE, center=centers), nu=10, nv=10) 528s + set.seed(1) 528s + l <- irlba(counts, center=centers, nu=10, nv=10, fastpath=FAST) 528s + if (isTRUE(max(abs(out$d - l$d)) > 1e-3)) 528s + { 528s + stop("Failed centering test (n > m) fastpath=", FAST) 528s + } 528s + 528s + # test for https://github.com/bwlewis/irlba/issues/42 528s + set.seed(1234) 528s + a <- matrix(rnorm(10000), ncol=20) 528s + center <- runif(ncol(a)) 528s + scale <- runif(ncol(a)) 528s + L <- irlba(a, 5, scale=scale, center=center, fastpath=FAST) 528s + S <- svd(scale(a, center=center, scale=scale)) 528s + if (isTRUE(max(abs(S$d[1:5] - L$d)) > 1e-3)) 528s + { 528s + stop("Failed scale + center test fastpath=", FAST) 528s + } 528s + } 529s > 529s > # smallest=TRUE, m > n (fastpath always FALSE in this case) 529s > x <- matrix(rnorm(5000), 100) 529s > set.seed(1) 529s > L <- irlba(x, nv=5, smallest=TRUE) 529s > if (!isTRUE(all.equal(L$d, tail(svd(x)$d, 5)))) 529s + { 529s + stop("Failed smallest svd test") 529s + } 529s > 529s > # smallest=TRUE, n > m 529s > x <- matrix(rnorm(5000), 50) 529s > set.seed(1) 529s > L <- irlba(x, nv=5, smallest=TRUE) 529s > if (!isTRUE(all.equal(L$d, tail(svd(x)$d, 5)))) 529s + { 529s + stop("Failed smallest svd test") 529s + } 529s > 529s > # test for https://github.com/bwlewis/irlba/issues/47 (again, fastpath always FALSE) 529s > set.seed(2345) 529s > a <- spMatrix(50, 40, x=runif(200), i=sample(50, 200, replace=TRUE), j=sample(40, 200, replace=TRUE)) 529s > center <- runif(ncol(a)) 529s > scale <- runif(ncol(a)) 529s > L <- irlba(a, 5, scale=scale, center=center) 529s > S <- svd(scale(a, center=center, scale=scale)) 529s > if (isTRUE(max(abs(S$d[1:5] - L$d)) > 1e-3)) 529s + { 529s + stop("Failed scale + center test for non-fastpath'able matrices") 529s + } 529s > 530s autopkgtest [22:21:32]: test run-unit-test: -----------------------] 530s autopkgtest [22:21:32]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 530s run-unit-test PASS 531s autopkgtest [22:21:33]: test pkg-r-autopkgtest: preparing testbed 531s Reading package lists... 531s Building dependency tree... 531s Reading state information... 531s Starting pkgProblemResolver with broken count: 0 532s Starting 2 pkgProblemResolver with broken count: 0 532s Done 532s The following NEW packages will be installed: 532s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 532s dctrl-tools g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc 532s gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 532s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8 532s libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-14-dev 532s libgfortran-14-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev 532s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3 532s libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 532s libpkgconf3 libpng-dev libquadmath0 libreadline-dev libstdc++-14-dev 532s libtirpc-dev libtsan2 libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin 532s r-base-dev zlib1g-dev 532s 0 upgraded, 55 newly installed, 0 to remove and 0 not upgraded. 532s Need to get 103 MB of archives. 532s After this operation, 363 MB of additional disk space will be used. 532s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 533s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 533s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 533s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 533s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 533s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 533s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 533s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 533s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 533s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 533s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 534s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 534s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 534s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 534s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 534s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 535s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 535s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 535s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 535s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 535s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 536s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 536s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 536s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 536s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 536s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 536s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-17ubuntu3 [966 kB] 536s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [12.6 MB] 536s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-17ubuntu3 [13.6 kB] 536s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 536s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 536s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 536s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 536s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 536s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 536s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 537s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 537s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 537s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 537s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 537s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 537s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 537s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 537s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 537s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 537s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 537s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 537s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.47-1 [298 kB] 537s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 537s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.4-1 [189 kB] 537s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 537s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 537s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 537s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.3-1 [4176 B] 537s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 538s Fetched 103 MB in 5s (19.5 MB/s) 538s Selecting previously unselected package libisl23:amd64. 538s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79452 files and directories currently installed.) 538s Preparing to unpack .../00-libisl23_0.27-1_amd64.deb ... 538s Unpacking libisl23:amd64 (0.27-1) ... 538s Selecting previously unselected package libmpc3:amd64. 538s Preparing to unpack .../01-libmpc3_1.3.1-1build2_amd64.deb ... 538s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 538s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 538s Preparing to unpack .../02-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 538s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 538s Selecting previously unselected package cpp-14. 538s Preparing to unpack .../03-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 538s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 538s Selecting previously unselected package cpp-x86-64-linux-gnu. 538s Preparing to unpack .../04-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 538s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 538s Selecting previously unselected package cpp. 538s Preparing to unpack .../05-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 538s Unpacking cpp (4:14.2.0-1ubuntu1) ... 538s Selecting previously unselected package libcc1-0:amd64. 538s Preparing to unpack .../06-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 538s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 538s Selecting previously unselected package libitm1:amd64. 538s Preparing to unpack .../07-libitm1_15-20250222-0ubuntu1_amd64.deb ... 538s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 538s Selecting previously unselected package libasan8:amd64. 538s Preparing to unpack .../08-libasan8_15-20250222-0ubuntu1_amd64.deb ... 538s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 538s Selecting previously unselected package liblsan0:amd64. 538s Preparing to unpack .../09-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 538s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 538s Selecting previously unselected package libtsan2:amd64. 538s Preparing to unpack .../10-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 538s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 538s Selecting previously unselected package libubsan1:amd64. 538s Preparing to unpack .../11-libubsan1_15-20250222-0ubuntu1_amd64.deb ... 538s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ... 538s Selecting previously unselected package libhwasan0:amd64. 539s Preparing to unpack .../12-libhwasan0_15-20250222-0ubuntu1_amd64.deb ... 539s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ... 539s Selecting previously unselected package libquadmath0:amd64. 539s Preparing to unpack .../13-libquadmath0_15-20250222-0ubuntu1_amd64.deb ... 539s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ... 539s Selecting previously unselected package libgcc-14-dev:amd64. 539s Preparing to unpack .../14-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ... 539s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 539s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 539s Preparing to unpack .../15-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 539s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 539s Selecting previously unselected package gcc-14. 539s Preparing to unpack .../16-gcc-14_14.2.0-17ubuntu3_amd64.deb ... 539s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 539s Selecting previously unselected package gcc-x86-64-linux-gnu. 539s Preparing to unpack .../17-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 539s 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g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 540s Selecting previously unselected package g++. 540s Preparing to unpack .../23-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 540s Unpacking g++ (4:14.2.0-1ubuntu1) ... 540s Selecting previously unselected package build-essential. 540s Preparing to unpack .../24-build-essential_12.10ubuntu1_amd64.deb ... 540s Unpacking build-essential (12.10ubuntu1) ... 540s Selecting previously unselected package dctrl-tools. 540s Preparing to unpack .../25-dctrl-tools_2.24-3build3_amd64.deb ... 540s Unpacking dctrl-tools (2.24-3build3) ... 540s Selecting previously unselected package libgfortran-14-dev:amd64. 540s Preparing to unpack .../26-libgfortran-14-dev_14.2.0-17ubuntu3_amd64.deb ... 540s Unpacking libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 540s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 540s Preparing to unpack .../27-gfortran-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 540s Unpacking gfortran-14-x86-64-linux-gnu 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unselected package libbz2-dev:amd64. 541s Preparing to unpack .../33-libbz2-dev_1.0.8-6_amd64.deb ... 541s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 541s Selecting previously unselected package libdeflate-dev:amd64. 541s Preparing to unpack .../34-libdeflate-dev_1.23-1_amd64.deb ... 541s Unpacking libdeflate-dev:amd64 (1.23-1) ... 541s Selecting previously unselected package libicu-dev:amd64. 541s Preparing to unpack .../35-libicu-dev_76.1-1ubuntu2_amd64.deb ... 541s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ... 541s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 541s Preparing to unpack .../36-libjpeg-turbo8-dev_2.1.5-3ubuntu2_amd64.deb ... 541s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ... 541s Selecting previously unselected package libjpeg8-dev:amd64. 541s Preparing to unpack .../37-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 541s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 541s Selecting previously unselected package libjpeg-dev:amd64. 541s Preparing 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Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 542s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ... 542s Setting up libncurses-dev:amd64 (6.5+20250216-2) ... 542s Setting up libreadline-dev:amd64 (8.2-6) ... 542s Setting up libpcre2-16-0:amd64 (10.45-1) ... 542s Setting up libpcre2-32-0:amd64 (10.45-1) ... 542s Setting up libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 542s Setting up libpkgconf3:amd64 (1.8.1-4) ... 542s Setting up libquadmath0:amd64 (15-20250222-0ubuntu1) ... 542s Setting up libmpc3:amd64 (1.3.1-1build2) ... 542s Setting up icu-devtools (76.1-1ubuntu2) ... 542s Setting up pkgconf-bin (1.8.1-4) ... 542s Setting up liblzma-dev:amd64 (5.6.4-1) ... 542s Setting up libubsan1:amd64 (15-20250222-0ubuntu1) ... 542s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 542s Setting up libpcre2-posix3:amd64 (10.45-1) ... 542s Setting up libhwasan0:amd64 (15-20250222-0ubuntu1) ... 542s Setting up libasan8:amd64 (15-20250222-0ubuntu1) ... 542s Setting up libtsan2:amd64 (15-20250222-0ubuntu1) ... 542s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 542s Setting up libisl23:amd64 (0.27-1) ... 542s Setting up libdeflate-dev:amd64 (1.23-1) ... 542s Setting up libicu-dev:amd64 (76.1-1ubuntu2) ... 542s Setting up libcc1-0:amd64 (15-20250222-0ubuntu1) ... 542s Setting up liblsan0:amd64 (15-20250222-0ubuntu1) ... 542s Setting up libblas-dev:amd64 (3.12.1-2) ... 542s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 542s Setting up dctrl-tools (2.24-3build3) ... 542s Setting up libitm1:amd64 (15-20250222-0ubuntu1) ... 542s Setting up libbz2-dev:amd64 (1.0.8-6) ... 542s Setting up libpcre2-dev:amd64 (10.45-1) ... 542s Setting up libpng-dev:amd64 (1.6.47-1) ... 542s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 542s Setting up pkgconf:amd64 (1.8.1-4) ... 542s Setting up liblapack-dev:amd64 (3.12.1-2) ... 542s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 542s Setting up cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 542s Setting up cpp-14 (14.2.0-17ubuntu3) ... 542s Setting up libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 542s Setting up libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 542s Setting up cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 542s Setting up libgfortran-14-dev:amd64 (14.2.0-17ubuntu3) ... 542s Setting up cpp (4:14.2.0-1ubuntu1) ... 542s Setting up gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 542s Setting up gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 542s Setting up gcc-14 (14.2.0-17ubuntu3) ... 542s Setting up gfortran-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 542s Setting up g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 542s Setting up g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 542s Setting up g++-14 (14.2.0-17ubuntu3) ... 542s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 542s Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 542s Setting up gcc (4:14.2.0-1ubuntu1) ... 542s Setting up g++ (4:14.2.0-1ubuntu1) ... 542s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 542s Setting up build-essential (12.10ubuntu1) ... 542s Setting up gfortran (4:14.2.0-1ubuntu1) ... 542s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 542s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 542s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 542s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 542s Setting up r-base-dev (4.4.3-1) ... 542s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 542s Processing triggers for libc-bin (2.41-1ubuntu2) ... 542s Processing triggers for man-db (2.13.0-1) ... 543s Processing triggers for install-info (7.1.1-1) ... 544s autopkgtest [22:21:46]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 544s autopkgtest [22:21:46]: test pkg-r-autopkgtest: [----------------------- 544s Test: Try to load the R library irlba 544s 544s R version 4.4.3 (2025-02-28) -- "Trophy Case" 544s Copyright (C) 2025 The R Foundation for Statistical Computing 544s Platform: x86_64-pc-linux-gnu 544s 544s R is free software and comes with ABSOLUTELY NO WARRANTY. 544s You are welcome to redistribute it under certain conditions. 544s Type 'license()' or 'licence()' for distribution details. 544s 544s R is a collaborative project with many contributors. 544s Type 'contributors()' for more information and 544s 'citation()' on how to cite R or R packages in publications. 544s 544s Type 'demo()' for some demos, 'help()' for on-line help, or 544s 'help.start()' for an HTML browser interface to help. 544s Type 'q()' to quit R. 544s 544s > library('irlba') 544s Loading required package: Matrix 545s > 545s > 545s Other tests are currently unsupported! 545s They will be progressively added. 546s autopkgtest [22:21:48]: test pkg-r-autopkgtest: -----------------------] 546s pkg-r-autopkgtest PASS 546s autopkgtest [22:21:48]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 547s autopkgtest [22:21:49]: @@@@@@@@@@@@@@@@@@@@ summary 547s run-unit-test PASS 547s pkg-r-autopkgtest PASS 565s nova [W] Skipping flock for amd64 565s Creating nova instance adt-plucky-amd64-r-cran-irlba-20250315-221241-juju-7f2275-prod-proposed-migration-environment-2-9d6e6503-ce7f-4d15-a136-75022cca2730 from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)... 565s nova [W] nova quota exceeded (attempt #0) 565s nova [W] Timed out waiting for 9779050a-db0c-4c9e-aeee-cd0251f70481 to get deleted.